Multiple sequence alignment - TraesCS6B01G070600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G070600 chr6B 100.000 2321 0 0 1 2321 47228201 47230521 0.000000e+00 4287.0
1 TraesCS6B01G070600 chr6B 90.586 1689 153 6 1 1685 680511943 680510257 0.000000e+00 2233.0
2 TraesCS6B01G070600 chr6B 95.652 69 3 0 2148 2216 47087934 47088002 6.780000e-21 111.0
3 TraesCS6B01G070600 chr6B 93.617 47 2 1 2161 2206 46790814 46790768 4.140000e-08 69.4
4 TraesCS6B01G070600 chr5B 95.021 1687 82 2 1 1686 278241971 278243656 0.000000e+00 2649.0
5 TraesCS6B01G070600 chrUn 95.265 1605 73 3 83 1685 66389983 66391586 0.000000e+00 2540.0
6 TraesCS6B01G070600 chrUn 94.834 542 20 2 1684 2219 96212242 96212781 0.000000e+00 839.0
7 TraesCS6B01G070600 chr2B 93.539 1687 103 5 3 1685 128338490 128340174 0.000000e+00 2507.0
8 TraesCS6B01G070600 chr4B 95.309 1471 68 1 216 1685 220110808 220109338 0.000000e+00 2333.0
9 TraesCS6B01G070600 chr4A 87.544 1694 193 9 1 1685 733774851 733776535 0.000000e+00 1943.0
10 TraesCS6B01G070600 chr6A 85.630 1691 220 21 6 1685 212164558 212166236 0.000000e+00 1755.0
11 TraesCS6B01G070600 chr7B 85.382 1676 225 16 19 1685 639287233 639285569 0.000000e+00 1720.0
12 TraesCS6B01G070600 chr3B 86.963 1419 174 9 1 1414 177915535 177914123 0.000000e+00 1585.0
13 TraesCS6B01G070600 chr3B 78.146 453 82 16 1240 1688 422349896 422349457 2.940000e-69 272.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G070600 chr6B 47228201 47230521 2320 False 4287 4287 100.000 1 2321 1 chr6B.!!$F2 2320
1 TraesCS6B01G070600 chr6B 680510257 680511943 1686 True 2233 2233 90.586 1 1685 1 chr6B.!!$R2 1684
2 TraesCS6B01G070600 chr5B 278241971 278243656 1685 False 2649 2649 95.021 1 1686 1 chr5B.!!$F1 1685
3 TraesCS6B01G070600 chrUn 66389983 66391586 1603 False 2540 2540 95.265 83 1685 1 chrUn.!!$F1 1602
4 TraesCS6B01G070600 chrUn 96212242 96212781 539 False 839 839 94.834 1684 2219 1 chrUn.!!$F2 535
5 TraesCS6B01G070600 chr2B 128338490 128340174 1684 False 2507 2507 93.539 3 1685 1 chr2B.!!$F1 1682
6 TraesCS6B01G070600 chr4B 220109338 220110808 1470 True 2333 2333 95.309 216 1685 1 chr4B.!!$R1 1469
7 TraesCS6B01G070600 chr4A 733774851 733776535 1684 False 1943 1943 87.544 1 1685 1 chr4A.!!$F1 1684
8 TraesCS6B01G070600 chr6A 212164558 212166236 1678 False 1755 1755 85.630 6 1685 1 chr6A.!!$F1 1679
9 TraesCS6B01G070600 chr7B 639285569 639287233 1664 True 1720 1720 85.382 19 1685 1 chr7B.!!$R1 1666
10 TraesCS6B01G070600 chr3B 177914123 177915535 1412 True 1585 1585 86.963 1 1414 1 chr3B.!!$R1 1413

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
727 737 1.149782 TTAAATGGGGCCTGGGTCCA 61.15 55.0 12.66 0.16 42.75 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2237 2270 0.450583 AATGCATGAACGCAGAGCAG 59.549 50.0 0.0 0.0 46.99 4.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
85 91 2.026641 ACGCTGCTGAATGCCAATATT 58.973 42.857 0.00 0.00 42.00 1.28
94 100 6.324512 TGCTGAATGCCAATATTTCCAGTATT 59.675 34.615 0.00 0.00 42.00 1.89
245 253 6.711194 TCGTATCTGTAGATCGAAGGAGAAAT 59.289 38.462 11.32 0.00 36.05 2.17
280 288 7.918562 GGTGTGAAAGACTTACATAAGCAAAAA 59.081 33.333 0.00 0.00 36.79 1.94
397 405 5.408909 GGTAGCTTCTGTCAAAACTAAGGTC 59.591 44.000 0.00 0.00 34.19 3.85
503 511 2.978824 CGAGGGTGTGGGTCGATT 59.021 61.111 0.00 0.00 35.70 3.34
727 737 1.149782 TTAAATGGGGCCTGGGTCCA 61.150 55.000 12.66 0.16 42.75 4.02
1069 1082 4.156008 CCTGGTGTTATGCTTACTTTCCAC 59.844 45.833 0.00 0.00 0.00 4.02
1329 1348 2.425312 GACTGAGGATTGAGAAGCTCGA 59.575 50.000 0.00 0.00 32.35 4.04
1360 1380 2.295885 CTTGAGGGAATGGTGATGCTC 58.704 52.381 0.00 0.00 0.00 4.26
1383 1404 4.213694 CCATCACTAGAAGATGCATGCTTC 59.786 45.833 22.51 22.51 41.13 3.86
1418 1440 6.761242 GTCTTTTGCCTTGGTTTTATGTTTCT 59.239 34.615 0.00 0.00 0.00 2.52
1420 1442 6.917217 TTTGCCTTGGTTTTATGTTTCTTG 57.083 33.333 0.00 0.00 0.00 3.02
1642 1669 5.856455 GTGGACTTGATTTGTATTTCCGTTG 59.144 40.000 0.00 0.00 0.00 4.10
1649 1676 0.785378 TGTATTTCCGTTGTGTCGCG 59.215 50.000 0.00 0.00 0.00 5.87
1669 1696 3.893521 CGGTAATGGAAAGGGGTTATGT 58.106 45.455 0.00 0.00 0.00 2.29
1707 1734 9.634163 AAAACTTTTCGTAATTGATAATCACCC 57.366 29.630 0.00 0.00 0.00 4.61
1709 1736 9.675464 AACTTTTCGTAATTGATAATCACCCTA 57.325 29.630 0.00 0.00 0.00 3.53
1714 1741 9.839817 TTCGTAATTGATAATCACCCTAATCAA 57.160 29.630 0.00 0.00 41.24 2.57
1715 1742 9.839817 TCGTAATTGATAATCACCCTAATCAAA 57.160 29.630 1.19 0.00 40.60 2.69
1761 1788 3.642141 AGTGGGGATGTTGTTTTTCACT 58.358 40.909 0.00 0.00 0.00 3.41
1762 1789 3.384467 AGTGGGGATGTTGTTTTTCACTG 59.616 43.478 0.00 0.00 33.63 3.66
1783 1816 6.711645 CACTGAAAAATCCCAAATTTGTGGAT 59.288 34.615 24.32 24.32 41.65 3.41
1785 1818 6.835174 TGAAAAATCCCAAATTTGTGGATCA 58.165 32.000 27.43 22.07 41.65 2.92
1905 1938 5.105716 GCCGGTATCATCTGTCTGTATGTAT 60.106 44.000 1.90 0.00 0.00 2.29
1906 1939 6.095021 GCCGGTATCATCTGTCTGTATGTATA 59.905 42.308 1.90 0.00 0.00 1.47
1998 2031 1.233019 CAAGCAGTCTCCAACCACAG 58.767 55.000 0.00 0.00 0.00 3.66
2029 2062 7.040409 GCTAAGGAAGAAACAAAGGAAGATGAA 60.040 37.037 0.00 0.00 0.00 2.57
2033 2066 7.176340 AGGAAGAAACAAAGGAAGATGAATCTG 59.824 37.037 0.00 0.00 37.19 2.90
2052 2085 4.883083 TCTGTTTTACTACTGCTGGAGTG 58.117 43.478 18.15 4.82 35.96 3.51
2087 2120 5.288712 CGAATACGTACTGCATCAGAAGTTT 59.711 40.000 0.00 0.00 34.64 2.66
2088 2121 6.506513 CGAATACGTACTGCATCAGAAGTTTC 60.507 42.308 0.00 0.00 34.64 2.78
2194 2227 6.369340 TGCCAATATGTTTGCAAATTCTTCAG 59.631 34.615 16.21 4.39 33.55 3.02
2220 2253 3.339547 CAACCGGTGGATGGTCTTT 57.660 52.632 8.52 0.00 39.29 2.52
2221 2254 0.881118 CAACCGGTGGATGGTCTTTG 59.119 55.000 8.52 0.00 39.29 2.77
2222 2255 0.251165 AACCGGTGGATGGTCTTTGG 60.251 55.000 8.52 0.00 39.29 3.28
2223 2256 2.046285 CCGGTGGATGGTCTTTGGC 61.046 63.158 0.00 0.00 0.00 4.52
2224 2257 1.002134 CGGTGGATGGTCTTTGGCT 60.002 57.895 0.00 0.00 0.00 4.75
2225 2258 1.026718 CGGTGGATGGTCTTTGGCTC 61.027 60.000 0.00 0.00 0.00 4.70
2226 2259 0.681243 GGTGGATGGTCTTTGGCTCC 60.681 60.000 0.00 0.00 0.00 4.70
2227 2260 0.038166 GTGGATGGTCTTTGGCTCCA 59.962 55.000 0.00 0.00 33.70 3.86
2228 2261 1.002069 TGGATGGTCTTTGGCTCCAT 58.998 50.000 0.00 0.00 43.54 3.41
2229 2262 1.358787 TGGATGGTCTTTGGCTCCATT 59.641 47.619 0.00 0.00 41.33 3.16
2230 2263 1.753073 GGATGGTCTTTGGCTCCATTG 59.247 52.381 0.00 0.00 41.33 2.82
2231 2264 1.753073 GATGGTCTTTGGCTCCATTGG 59.247 52.381 0.00 0.00 41.33 3.16
2232 2265 0.899717 TGGTCTTTGGCTCCATTGGC 60.900 55.000 0.00 0.00 0.00 4.52
2233 2266 0.899717 GGTCTTTGGCTCCATTGGCA 60.900 55.000 0.00 0.00 40.80 4.92
2234 2267 1.188863 GTCTTTGGCTCCATTGGCAT 58.811 50.000 0.00 0.00 42.07 4.40
2235 2268 1.134907 GTCTTTGGCTCCATTGGCATG 60.135 52.381 0.00 0.00 42.07 4.06
2248 2281 3.437795 GCATGGCTGCTCTGCGTT 61.438 61.111 10.29 0.00 45.32 4.84
2249 2282 2.789917 CATGGCTGCTCTGCGTTC 59.210 61.111 0.00 0.00 0.00 3.95
2250 2283 2.036571 CATGGCTGCTCTGCGTTCA 61.037 57.895 0.00 0.00 0.00 3.18
2251 2284 1.077930 ATGGCTGCTCTGCGTTCAT 60.078 52.632 0.00 0.00 0.00 2.57
2252 2285 1.374343 ATGGCTGCTCTGCGTTCATG 61.374 55.000 0.00 0.00 0.00 3.07
2253 2286 2.099831 GCTGCTCTGCGTTCATGC 59.900 61.111 0.00 0.00 0.00 4.06
2254 2287 2.683859 GCTGCTCTGCGTTCATGCA 61.684 57.895 0.00 0.00 43.95 3.96
2255 2288 1.989966 GCTGCTCTGCGTTCATGCAT 61.990 55.000 0.00 0.00 45.26 3.96
2256 2289 0.450583 CTGCTCTGCGTTCATGCATT 59.549 50.000 0.00 0.00 45.26 3.56
2257 2290 0.883153 TGCTCTGCGTTCATGCATTT 59.117 45.000 0.00 0.00 45.26 2.32
2258 2291 1.270274 TGCTCTGCGTTCATGCATTTT 59.730 42.857 0.00 0.00 45.26 1.82
2259 2292 2.487372 TGCTCTGCGTTCATGCATTTTA 59.513 40.909 0.00 0.00 45.26 1.52
2260 2293 3.103738 GCTCTGCGTTCATGCATTTTAG 58.896 45.455 0.00 0.00 45.26 1.85
2261 2294 3.426695 GCTCTGCGTTCATGCATTTTAGT 60.427 43.478 0.00 0.00 45.26 2.24
2262 2295 4.726416 CTCTGCGTTCATGCATTTTAGTT 58.274 39.130 0.00 0.00 45.26 2.24
2263 2296 5.673568 GCTCTGCGTTCATGCATTTTAGTTA 60.674 40.000 0.00 0.00 45.26 2.24
2264 2297 6.435430 TCTGCGTTCATGCATTTTAGTTAT 57.565 33.333 0.00 0.00 45.26 1.89
2265 2298 7.546778 TCTGCGTTCATGCATTTTAGTTATA 57.453 32.000 0.00 0.00 45.26 0.98
2266 2299 8.153479 TCTGCGTTCATGCATTTTAGTTATAT 57.847 30.769 0.00 0.00 45.26 0.86
2267 2300 8.282592 TCTGCGTTCATGCATTTTAGTTATATC 58.717 33.333 0.00 0.00 45.26 1.63
2268 2301 7.924940 TGCGTTCATGCATTTTAGTTATATCA 58.075 30.769 0.00 0.00 40.62 2.15
2269 2302 8.069574 TGCGTTCATGCATTTTAGTTATATCAG 58.930 33.333 0.00 0.00 40.62 2.90
2270 2303 8.282592 GCGTTCATGCATTTTAGTTATATCAGA 58.717 33.333 0.00 0.00 34.15 3.27
2283 2316 9.875691 TTAGTTATATCAGATGTATGACCATGC 57.124 33.333 0.00 0.00 30.46 4.06
2284 2317 7.910584 AGTTATATCAGATGTATGACCATGCA 58.089 34.615 3.40 3.40 37.79 3.96
2285 2318 7.821359 AGTTATATCAGATGTATGACCATGCAC 59.179 37.037 3.00 0.00 36.29 4.57
2286 2319 3.198409 TCAGATGTATGACCATGCACC 57.802 47.619 3.00 0.00 36.29 5.01
2287 2320 2.504996 TCAGATGTATGACCATGCACCA 59.495 45.455 3.00 0.00 36.29 4.17
2288 2321 3.136992 TCAGATGTATGACCATGCACCAT 59.863 43.478 3.00 0.00 36.29 3.55
2289 2322 3.252458 CAGATGTATGACCATGCACCATG 59.748 47.826 3.00 0.00 41.10 3.66
2302 2335 6.064846 CATGCACCATGGTTTAATACTCTC 57.935 41.667 16.84 0.00 38.11 3.20
2303 2336 5.172687 TGCACCATGGTTTAATACTCTCA 57.827 39.130 16.84 0.00 0.00 3.27
2304 2337 5.754782 TGCACCATGGTTTAATACTCTCAT 58.245 37.500 16.84 0.00 0.00 2.90
2305 2338 6.186957 TGCACCATGGTTTAATACTCTCATT 58.813 36.000 16.84 0.00 0.00 2.57
2306 2339 6.663093 TGCACCATGGTTTAATACTCTCATTT 59.337 34.615 16.84 0.00 0.00 2.32
2307 2340 7.178274 TGCACCATGGTTTAATACTCTCATTTT 59.822 33.333 16.84 0.00 0.00 1.82
2308 2341 8.034804 GCACCATGGTTTAATACTCTCATTTTT 58.965 33.333 16.84 0.00 0.00 1.94
2309 2342 9.357652 CACCATGGTTTAATACTCTCATTTTTG 57.642 33.333 16.84 0.00 0.00 2.44
2310 2343 9.308000 ACCATGGTTTAATACTCTCATTTTTGA 57.692 29.630 13.00 0.00 0.00 2.69
2314 2347 9.691362 TGGTTTAATACTCTCATTTTTGAAAGC 57.309 29.630 0.00 0.00 0.00 3.51
2315 2348 9.691362 GGTTTAATACTCTCATTTTTGAAAGCA 57.309 29.630 0.00 0.00 0.00 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
122 128 5.118990 CCTGTCAATAATGGTCTTCGACAT 58.881 41.667 0.00 0.00 33.68 3.06
209 217 8.520062 GATCTACAGATACGAGTCCATCGCAG 62.520 50.000 0.00 0.00 44.47 5.18
245 253 2.096248 GTCTTTCACACCCAAACCACA 58.904 47.619 0.00 0.00 0.00 4.17
397 405 1.097232 TCCAGCAAGGCGAATCATTG 58.903 50.000 0.00 0.00 39.31 2.82
503 511 3.805066 TGGTTTCTGATCACCAATGGA 57.195 42.857 6.16 0.00 40.26 3.41
841 853 2.709934 AGCATCCTGGAATAGCTGTCAT 59.290 45.455 17.35 0.00 33.67 3.06
844 856 3.262915 GGATAGCATCCTGGAATAGCTGT 59.737 47.826 23.52 19.32 46.19 4.40
1069 1082 4.848357 ACTGTGTAGAAAATCTCCCCATG 58.152 43.478 0.00 0.00 0.00 3.66
1329 1348 3.795688 TTCCCTCAAGCAGTTCTTCAT 57.204 42.857 0.00 0.00 31.27 2.57
1360 1380 3.741249 AGCATGCATCTTCTAGTGATGG 58.259 45.455 21.98 11.51 40.98 3.51
1383 1404 2.613506 GCAAAAGACGACCACCGGG 61.614 63.158 6.32 0.00 43.93 5.73
1418 1440 1.149101 AGGGGAGAAACTTCAGGCAA 58.851 50.000 0.00 0.00 0.00 4.52
1420 1442 0.402121 ACAGGGGAGAAACTTCAGGC 59.598 55.000 0.00 0.00 0.00 4.85
1450 1473 1.680735 TCACAAGCGAGCACCAAAATT 59.319 42.857 0.00 0.00 0.00 1.82
1642 1669 0.725117 CCTTTCCATTACCGCGACAC 59.275 55.000 8.23 0.00 0.00 3.67
1649 1676 4.212716 GGACATAACCCCTTTCCATTACC 58.787 47.826 0.00 0.00 0.00 2.85
1695 1722 8.359875 TGCTTTTTGATTAGGGTGATTATCAA 57.640 30.769 0.00 0.00 35.76 2.57
1707 1734 9.362539 AGTGATGCTAAATTGCTTTTTGATTAG 57.637 29.630 0.00 0.00 0.00 1.73
1709 1736 8.500773 CAAGTGATGCTAAATTGCTTTTTGATT 58.499 29.630 0.00 0.00 0.00 2.57
1714 1741 5.240121 CCCAAGTGATGCTAAATTGCTTTT 58.760 37.500 0.00 0.00 0.00 2.27
1715 1742 4.824289 CCCAAGTGATGCTAAATTGCTTT 58.176 39.130 0.00 0.00 0.00 3.51
1761 1788 6.835174 TGATCCACAAATTTGGGATTTTTCA 58.165 32.000 27.72 22.25 37.93 2.69
1762 1789 7.607223 TCATGATCCACAAATTTGGGATTTTTC 59.393 33.333 27.72 20.77 37.93 2.29
1783 1816 1.212375 ATTGATCCCACCGGTCATGA 58.788 50.000 2.59 1.02 0.00 3.07
1785 1818 1.846439 AGAATTGATCCCACCGGTCAT 59.154 47.619 2.59 0.00 0.00 3.06
1854 1887 6.899393 AGGCATGTAAATTCAGAAGTGAAA 57.101 33.333 0.00 0.00 45.88 2.69
1857 1890 5.860182 CACAAGGCATGTAAATTCAGAAGTG 59.140 40.000 0.00 0.00 41.46 3.16
1998 2031 2.200373 TGTTTCTTCCTTAGCTGGCC 57.800 50.000 0.00 0.00 0.00 5.36
2029 2062 5.482908 CACTCCAGCAGTAGTAAAACAGAT 58.517 41.667 0.00 0.00 32.21 2.90
2033 2066 3.746492 CACCACTCCAGCAGTAGTAAAAC 59.254 47.826 0.00 0.00 32.21 2.43
2052 2085 3.800506 AGTACGTATTCGCTAATTGCACC 59.199 43.478 0.00 0.00 43.06 5.01
2232 2265 1.374343 ATGAACGCAGAGCAGCCATG 61.374 55.000 0.00 0.00 0.00 3.66
2233 2266 1.077930 ATGAACGCAGAGCAGCCAT 60.078 52.632 0.00 0.00 0.00 4.40
2234 2267 2.036571 CATGAACGCAGAGCAGCCA 61.037 57.895 0.00 0.00 0.00 4.75
2235 2268 2.789917 CATGAACGCAGAGCAGCC 59.210 61.111 0.00 0.00 0.00 4.85
2236 2269 1.989966 ATGCATGAACGCAGAGCAGC 61.990 55.000 0.00 0.00 46.99 5.25
2237 2270 0.450583 AATGCATGAACGCAGAGCAG 59.549 50.000 0.00 0.00 46.99 4.24
2238 2271 0.883153 AAATGCATGAACGCAGAGCA 59.117 45.000 0.00 0.00 46.99 4.26
2239 2272 1.986698 AAAATGCATGAACGCAGAGC 58.013 45.000 0.00 0.00 46.99 4.09
2240 2273 4.346734 ACTAAAATGCATGAACGCAGAG 57.653 40.909 0.00 0.00 46.99 3.35
2241 2274 4.764679 AACTAAAATGCATGAACGCAGA 57.235 36.364 0.00 0.00 46.99 4.26
2242 2275 8.069574 TGATATAACTAAAATGCATGAACGCAG 58.930 33.333 0.00 0.00 46.99 5.18
2244 2277 8.282592 TCTGATATAACTAAAATGCATGAACGC 58.717 33.333 0.00 0.00 0.00 4.84
2257 2290 9.875691 GCATGGTCATACATCTGATATAACTAA 57.124 33.333 0.00 0.00 0.00 2.24
2258 2291 9.034800 TGCATGGTCATACATCTGATATAACTA 57.965 33.333 0.00 0.00 0.00 2.24
2259 2292 7.821359 GTGCATGGTCATACATCTGATATAACT 59.179 37.037 0.00 0.00 0.00 2.24
2260 2293 7.065085 GGTGCATGGTCATACATCTGATATAAC 59.935 40.741 0.00 0.00 0.00 1.89
2261 2294 7.105588 GGTGCATGGTCATACATCTGATATAA 58.894 38.462 0.00 0.00 0.00 0.98
2262 2295 6.213195 TGGTGCATGGTCATACATCTGATATA 59.787 38.462 0.00 0.00 0.00 0.86
2263 2296 5.013391 TGGTGCATGGTCATACATCTGATAT 59.987 40.000 0.00 0.00 0.00 1.63
2264 2297 4.347583 TGGTGCATGGTCATACATCTGATA 59.652 41.667 0.00 0.00 0.00 2.15
2265 2298 3.136992 TGGTGCATGGTCATACATCTGAT 59.863 43.478 0.00 0.00 0.00 2.90
2266 2299 2.504996 TGGTGCATGGTCATACATCTGA 59.495 45.455 0.00 0.00 0.00 3.27
2267 2300 2.921821 TGGTGCATGGTCATACATCTG 58.078 47.619 0.00 0.00 0.00 2.90
2268 2301 3.483421 CATGGTGCATGGTCATACATCT 58.517 45.455 0.00 0.00 38.11 2.90
2269 2302 3.909776 CATGGTGCATGGTCATACATC 57.090 47.619 0.00 0.00 38.11 3.06
2279 2312 5.589855 TGAGAGTATTAAACCATGGTGCATG 59.410 40.000 20.60 0.00 41.10 4.06
2280 2313 5.754782 TGAGAGTATTAAACCATGGTGCAT 58.245 37.500 20.60 13.12 0.00 3.96
2281 2314 5.172687 TGAGAGTATTAAACCATGGTGCA 57.827 39.130 20.60 6.34 0.00 4.57
2282 2315 6.699575 AATGAGAGTATTAAACCATGGTGC 57.300 37.500 20.60 5.02 0.00 5.01
2283 2316 9.357652 CAAAAATGAGAGTATTAAACCATGGTG 57.642 33.333 20.60 0.00 0.00 4.17
2284 2317 9.308000 TCAAAAATGAGAGTATTAAACCATGGT 57.692 29.630 13.00 13.00 0.00 3.55
2288 2321 9.691362 GCTTTCAAAAATGAGAGTATTAAACCA 57.309 29.630 0.00 0.00 0.00 3.67
2289 2322 9.691362 TGCTTTCAAAAATGAGAGTATTAAACC 57.309 29.630 0.00 0.00 0.00 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.