Multiple sequence alignment - TraesCS6B01G070300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G070300 chr6B 100.000 6467 0 0 1 6467 46965854 46959388 0.000000e+00 11943
1 TraesCS6B01G070300 chr6B 93.467 2097 117 11 10 2095 47144752 47142665 0.000000e+00 3096
2 TraesCS6B01G070300 chr6B 85.021 2143 296 18 4343 6467 47280352 47278217 0.000000e+00 2156
3 TraesCS6B01G070300 chr6B 84.630 2134 303 20 4352 6467 46926469 46924343 0.000000e+00 2100
4 TraesCS6B01G070300 chr6B 84.405 2116 301 23 4370 6465 47092662 47090556 0.000000e+00 2052
5 TraesCS6B01G070300 chr6B 93.012 1245 79 6 4286 5522 47140702 47139458 0.000000e+00 1810
6 TraesCS6B01G070300 chr6B 85.739 1732 210 17 140 1848 46951206 46949489 0.000000e+00 1796
7 TraesCS6B01G070300 chr6B 83.584 1931 260 27 8 1898 46929485 46927572 0.000000e+00 1757
8 TraesCS6B01G070300 chr6B 91.894 1209 51 21 2695 3876 47142181 47140993 0.000000e+00 1646
9 TraesCS6B01G070300 chr6B 80.195 2156 379 34 4340 6467 46766009 46768144 0.000000e+00 1572
10 TraesCS6B01G070300 chr6B 85.182 1316 180 13 763 2069 47271398 47270089 0.000000e+00 1336
11 TraesCS6B01G070300 chr6B 91.717 495 30 6 2149 2639 47142668 47142181 0.000000e+00 676
12 TraesCS6B01G070300 chr6B 94.444 234 5 4 4054 4287 47141009 47140784 2.870000e-93 353
13 TraesCS6B01G070300 chr6B 96.410 195 6 1 3876 4070 1160112 1159919 2.910000e-83 320
14 TraesCS6B01G070300 chr6A 93.177 1788 109 6 102 1882 27013471 27011690 0.000000e+00 2614
15 TraesCS6B01G070300 chr6A 84.626 2140 306 19 4343 6465 27008649 27006516 0.000000e+00 2108
16 TraesCS6B01G070300 chr6A 83.738 2140 323 21 4343 6467 27106470 27104341 0.000000e+00 2001
17 TraesCS6B01G070300 chr6A 82.821 2148 340 24 4340 6467 26962840 26964978 0.000000e+00 1895
18 TraesCS6B01G070300 chr6A 84.625 1600 216 14 317 1898 27072605 27071018 0.000000e+00 1565
19 TraesCS6B01G070300 chr6A 90.308 1135 106 2 751 1882 27108818 27107685 0.000000e+00 1483
20 TraesCS6B01G070300 chr6A 84.828 435 44 14 350 777 27015187 27014768 1.000000e-112 418
21 TraesCS6B01G070300 chr6A 97.312 186 4 1 3871 4055 233342392 233342577 1.350000e-81 315
22 TraesCS6B01G070300 chr6A 80.802 349 49 13 3 348 27020157 27019824 2.310000e-64 257
23 TraesCS6B01G070300 chrUn 84.939 2138 307 12 4343 6467 96156368 96154233 0.000000e+00 2150
24 TraesCS6B01G070300 chrUn 84.995 2146 291 25 4343 6467 96298476 96296341 0.000000e+00 2150
25 TraesCS6B01G070300 chrUn 84.429 2145 313 17 4339 6467 96230216 96228077 0.000000e+00 2091
26 TraesCS6B01G070300 chrUn 84.666 2113 297 21 4372 6465 96217817 96215713 0.000000e+00 2082
27 TraesCS6B01G070300 chrUn 82.775 2148 341 24 4340 6467 95818128 95820266 0.000000e+00 1890
28 TraesCS6B01G070300 chrUn 88.143 1206 140 1 649 1854 96160338 96159136 0.000000e+00 1432
29 TraesCS6B01G070300 chrUn 84.265 1449 212 10 456 1899 95763271 95764708 0.000000e+00 1399
30 TraesCS6B01G070300 chrUn 84.053 1436 199 16 459 1892 96129332 96127925 0.000000e+00 1356
31 TraesCS6B01G070300 chrUn 85.512 987 102 25 63 1016 96182050 96181072 0.000000e+00 992
32 TraesCS6B01G070300 chrUn 97.778 180 4 0 3876 4055 40706916 40706737 1.750000e-80 311
33 TraesCS6B01G070300 chrUn 97.778 180 4 0 3876 4055 71055824 71055645 1.750000e-80 311
34 TraesCS6B01G070300 chrUn 97.765 179 4 0 3877 4055 87980928 87980750 6.300000e-80 309
35 TraesCS6B01G070300 chrUn 97.765 179 4 0 3877 4055 255038211 255038389 6.300000e-80 309
36 TraesCS6B01G070300 chrUn 97.765 179 4 0 3877 4055 354972381 354972559 6.300000e-80 309
37 TraesCS6B01G070300 chrUn 96.739 184 5 1 3877 4059 8841172 8841355 8.150000e-79 305
38 TraesCS6B01G070300 chrUn 97.207 179 5 0 3877 4055 88100291 88100113 2.930000e-78 303
39 TraesCS6B01G070300 chrUn 97.207 179 5 0 3877 4055 308182887 308182709 2.930000e-78 303
40 TraesCS6B01G070300 chrUn 97.207 179 5 0 3877 4055 310882924 310883102 2.930000e-78 303
41 TraesCS6B01G070300 chrUn 95.699 186 6 2 3870 4055 15978151 15977968 1.360000e-76 298
42 TraesCS6B01G070300 chrUn 91.803 122 9 1 3 124 96182166 96182046 1.120000e-37 169
43 TraesCS6B01G070300 chr2B 94.444 216 9 3 3861 4075 379265395 379265608 4.830000e-86 329
44 TraesCS6B01G070300 chr2B 93.868 212 8 5 3849 4059 522079182 522078975 1.350000e-81 315
45 TraesCS6B01G070300 chr2B 93.780 209 10 3 3848 4055 359864673 359864879 1.750000e-80 311
46 TraesCS6B01G070300 chr7B 98.361 183 3 0 3877 4059 46028493 46028675 8.090000e-84 322
47 TraesCS6B01G070300 chr3D 97.368 190 4 1 3867 4055 153512213 153512402 8.090000e-84 322
48 TraesCS6B01G070300 chr3B 97.354 189 3 2 3876 4064 766145368 766145182 2.910000e-83 320
49 TraesCS6B01G070300 chr3B 96.859 191 4 2 3865 4055 595692164 595691976 1.050000e-82 318
50 TraesCS6B01G070300 chr1A 98.883 179 2 0 3877 4055 82525884 82526062 2.910000e-83 320
51 TraesCS6B01G070300 chr1A 96.842 190 5 1 3876 4065 47208242 47208054 3.760000e-82 316
52 TraesCS6B01G070300 chr1A 97.814 183 3 1 3873 4055 515551293 515551474 1.350000e-81 315
53 TraesCS6B01G070300 chr1A 96.316 190 5 2 3877 4065 67828264 67828076 1.750000e-80 311
54 TraesCS6B01G070300 chr3A 97.826 184 4 0 3872 4055 724318923 724319106 1.050000e-82 318
55 TraesCS6B01G070300 chr4B 98.333 180 3 0 3876 4055 128540670 128540849 3.760000e-82 316
56 TraesCS6B01G070300 chr4B 98.333 180 3 0 3876 4055 588430817 588430996 3.760000e-82 316
57 TraesCS6B01G070300 chr4B 96.809 188 6 0 3876 4063 482663038 482662851 1.350000e-81 315
58 TraesCS6B01G070300 chr4B 97.283 184 5 0 3875 4058 142056728 142056545 4.870000e-81 313
59 TraesCS6B01G070300 chr4B 95.431 197 8 1 3877 4073 146013653 146013458 4.870000e-81 313
60 TraesCS6B01G070300 chr4B 92.727 220 11 4 3844 4059 512171675 512171893 4.870000e-81 313
61 TraesCS6B01G070300 chr4B 98.324 179 2 1 3876 4054 654180190 654180367 4.870000e-81 313
62 TraesCS6B01G070300 chr4B 96.774 186 6 0 3877 4062 28155282 28155097 1.750000e-80 311
63 TraesCS6B01G070300 chr4B 96.774 186 5 1 3870 4055 17361212 17361396 6.300000e-80 309
64 TraesCS6B01G070300 chr4B 97.222 180 5 0 3876 4055 39903781 39903602 8.150000e-79 305
65 TraesCS6B01G070300 chr4A 96.373 193 5 2 3863 4055 456485513 456485703 3.760000e-82 316
66 TraesCS6B01G070300 chr4A 96.373 193 5 2 3863 4055 456486318 456486508 3.760000e-82 316
67 TraesCS6B01G070300 chr4A 96.373 193 5 2 3863 4055 456487113 456487303 3.760000e-82 316
68 TraesCS6B01G070300 chr1D 98.324 179 3 0 3876 4054 211684752 211684930 1.350000e-81 315
69 TraesCS6B01G070300 chr1B 97.312 186 4 1 3870 4055 525839110 525838926 1.350000e-81 315
70 TraesCS6B01G070300 chr1B 94.203 207 7 4 3864 4067 214025469 214025673 1.750000e-80 311
71 TraesCS6B01G070300 chr5B 96.316 190 5 2 3866 4055 458559827 458560014 1.750000e-80 311
72 TraesCS6B01G070300 chr5B 95.337 193 8 1 3864 4055 287781198 287781006 8.150000e-79 305
73 TraesCS6B01G070300 chr6D 97.765 179 4 0 3877 4055 95293872 95293694 6.300000e-80 309


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G070300 chr6B 46959388 46965854 6466 True 11943.000000 11943 100.000000 1 6467 1 chr6B.!!$R3 6466
1 TraesCS6B01G070300 chr6B 47278217 47280352 2135 True 2156.000000 2156 85.021000 4343 6467 1 chr6B.!!$R6 2124
2 TraesCS6B01G070300 chr6B 47090556 47092662 2106 True 2052.000000 2052 84.405000 4370 6465 1 chr6B.!!$R4 2095
3 TraesCS6B01G070300 chr6B 46924343 46929485 5142 True 1928.500000 2100 84.107000 8 6467 2 chr6B.!!$R7 6459
4 TraesCS6B01G070300 chr6B 46949489 46951206 1717 True 1796.000000 1796 85.739000 140 1848 1 chr6B.!!$R2 1708
5 TraesCS6B01G070300 chr6B 46766009 46768144 2135 False 1572.000000 1572 80.195000 4340 6467 1 chr6B.!!$F1 2127
6 TraesCS6B01G070300 chr6B 47139458 47144752 5294 True 1516.200000 3096 92.906800 10 5522 5 chr6B.!!$R8 5512
7 TraesCS6B01G070300 chr6B 47270089 47271398 1309 True 1336.000000 1336 85.182000 763 2069 1 chr6B.!!$R5 1306
8 TraesCS6B01G070300 chr6A 26962840 26964978 2138 False 1895.000000 1895 82.821000 4340 6467 1 chr6A.!!$F1 2127
9 TraesCS6B01G070300 chr6A 27104341 27108818 4477 True 1742.000000 2001 87.023000 751 6467 2 chr6A.!!$R4 5716
10 TraesCS6B01G070300 chr6A 27006516 27015187 8671 True 1713.333333 2614 87.543667 102 6465 3 chr6A.!!$R3 6363
11 TraesCS6B01G070300 chr6A 27071018 27072605 1587 True 1565.000000 1565 84.625000 317 1898 1 chr6A.!!$R2 1581
12 TraesCS6B01G070300 chrUn 96296341 96298476 2135 True 2150.000000 2150 84.995000 4343 6467 1 chrUn.!!$R9 2124
13 TraesCS6B01G070300 chrUn 96228077 96230216 2139 True 2091.000000 2091 84.429000 4339 6467 1 chrUn.!!$R8 2128
14 TraesCS6B01G070300 chrUn 96215713 96217817 2104 True 2082.000000 2082 84.666000 4372 6465 1 chrUn.!!$R7 2093
15 TraesCS6B01G070300 chrUn 95818128 95820266 2138 False 1890.000000 1890 82.775000 4340 6467 1 chrUn.!!$F3 2127
16 TraesCS6B01G070300 chrUn 96154233 96160338 6105 True 1791.000000 2150 86.541000 649 6467 2 chrUn.!!$R11 5818
17 TraesCS6B01G070300 chrUn 95763271 95764708 1437 False 1399.000000 1399 84.265000 456 1899 1 chrUn.!!$F2 1443
18 TraesCS6B01G070300 chrUn 96127925 96129332 1407 True 1356.000000 1356 84.053000 459 1892 1 chrUn.!!$R6 1433
19 TraesCS6B01G070300 chrUn 96181072 96182166 1094 True 580.500000 992 88.657500 3 1016 2 chrUn.!!$R12 1013
20 TraesCS6B01G070300 chr4A 456485513 456487303 1790 False 316.000000 316 96.373000 3863 4055 3 chr4A.!!$F1 192

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
42 43 0.318784 GGCGTTAGGCGTGGATCTAG 60.319 60.000 0.00 0.00 44.92 2.43 F
104 105 0.323725 GCAAAGGCATCTTCCTCCCA 60.324 55.000 0.00 0.00 40.72 4.37 F
181 1913 0.387202 CAGGTCCATCTCTACCAGCG 59.613 60.000 0.00 0.00 38.30 5.18 F
2093 3902 0.033366 GCCGCATTGGTGTTTTTCCT 59.967 50.000 0.00 0.00 41.21 3.36 F
2127 3936 0.250901 AGAACATGTGCGCCTTTCCT 60.251 50.000 4.18 0.00 0.00 3.36 F
3138 5304 0.247262 CGACATCCAAATCGCACACG 60.247 55.000 0.00 0.00 42.01 4.49 F
3364 5883 1.069775 TTGTCTTAACACCCCCTCCC 58.930 55.000 0.00 0.00 34.35 4.30 F
3419 5947 1.478510 CCTACCTCTACCACTGCACTG 59.521 57.143 0.00 0.00 0.00 3.66 F
3426 5954 2.028112 TCTACCACTGCACTGAACCATC 60.028 50.000 0.00 0.00 0.00 3.51 F
4704 10214 2.235650 TCATGGCTCAGAAGACTTGGAG 59.764 50.000 8.47 8.47 36.54 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1366 3165 0.032912 ACCATGATGCTGGGATTGCA 60.033 50.000 0.00 0.0 44.95 4.08 R
2074 3883 0.033366 AGGAAAAACACCAATGCGGC 59.967 50.000 0.00 0.0 39.03 6.53 R
2144 3953 0.249031 GCGCCAAATTATCAGGCCAC 60.249 55.000 5.01 0.0 45.56 5.01 R
3118 5284 0.096976 GTGTGCGATTTGGATGTCGG 59.903 55.000 0.00 0.0 38.24 4.79 R
3374 5893 0.512952 GCAATATCATCGCCGACCAC 59.487 55.000 0.00 0.0 0.00 4.16 R
4479 9986 1.768275 ACCATCTCCCACGCATGATAA 59.232 47.619 0.00 0.0 0.00 1.75 R
5350 11331 1.951895 GCAGCAATCACCATCCTCACA 60.952 52.381 0.00 0.0 0.00 3.58 R
5433 11414 7.948278 AGCTAATAATAAGGAAGCAGTTACG 57.052 36.000 0.00 0.0 35.63 3.18 R
5453 11434 3.774734 TCACCTTCTCACCTACAAGCTA 58.225 45.455 0.00 0.0 0.00 3.32 R
6045 12156 0.249322 ACCGCGGACACAGTATATGC 60.249 55.000 35.90 0.0 0.00 3.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 2.697751 AGAGCTATGACCTGTCCATGTC 59.302 50.000 0.00 0.00 0.00 3.06
23 24 1.410517 AGCTATGACCTGTCCATGTCG 59.589 52.381 0.00 0.00 34.18 4.35
24 25 1.539065 GCTATGACCTGTCCATGTCGG 60.539 57.143 0.00 0.00 34.18 4.79
26 27 2.509336 GACCTGTCCATGTCGGCG 60.509 66.667 0.00 0.00 33.14 6.46
27 28 3.296709 GACCTGTCCATGTCGGCGT 62.297 63.158 6.85 0.00 33.14 5.68
28 29 2.047274 CCTGTCCATGTCGGCGTT 60.047 61.111 6.85 0.00 33.14 4.84
29 30 1.216977 CCTGTCCATGTCGGCGTTA 59.783 57.895 6.85 0.00 33.14 3.18
30 31 0.806102 CCTGTCCATGTCGGCGTTAG 60.806 60.000 6.85 0.00 33.14 2.34
31 32 0.806102 CTGTCCATGTCGGCGTTAGG 60.806 60.000 6.85 5.43 33.14 2.69
40 41 2.499685 GGCGTTAGGCGTGGATCT 59.500 61.111 0.00 0.00 44.92 2.75
42 43 0.318784 GGCGTTAGGCGTGGATCTAG 60.319 60.000 0.00 0.00 44.92 2.43
43 44 0.666913 GCGTTAGGCGTGGATCTAGA 59.333 55.000 0.00 0.00 43.66 2.43
45 46 2.486982 GCGTTAGGCGTGGATCTAGATA 59.513 50.000 4.89 0.00 43.66 1.98
46 47 3.057736 GCGTTAGGCGTGGATCTAGATAA 60.058 47.826 4.89 0.00 43.66 1.75
47 48 4.474113 CGTTAGGCGTGGATCTAGATAAC 58.526 47.826 4.89 6.59 35.54 1.89
48 49 4.023450 CGTTAGGCGTGGATCTAGATAACA 60.023 45.833 4.89 5.36 35.54 2.41
49 50 5.506815 CGTTAGGCGTGGATCTAGATAACAA 60.507 44.000 4.89 0.00 35.54 2.83
51 52 5.140747 AGGCGTGGATCTAGATAACAATC 57.859 43.478 4.89 3.76 0.00 2.67
52 53 4.021016 AGGCGTGGATCTAGATAACAATCC 60.021 45.833 4.89 11.48 38.53 3.01
53 54 4.262463 GGCGTGGATCTAGATAACAATCCA 60.262 45.833 4.89 5.79 44.10 3.41
56 57 5.825593 TGGATCTAGATAACAATCCACCC 57.174 43.478 4.89 0.00 42.05 4.61
57 58 5.223655 TGGATCTAGATAACAATCCACCCA 58.776 41.667 4.89 1.82 42.05 4.51
58 59 5.669904 TGGATCTAGATAACAATCCACCCAA 59.330 40.000 4.89 0.00 42.05 4.12
59 60 5.998363 GGATCTAGATAACAATCCACCCAAC 59.002 44.000 4.89 0.00 38.05 3.77
60 61 6.183361 GGATCTAGATAACAATCCACCCAACT 60.183 42.308 4.89 0.00 38.05 3.16
61 62 5.989477 TCTAGATAACAATCCACCCAACTG 58.011 41.667 0.00 0.00 0.00 3.16
63 64 2.969821 TAACAATCCACCCAACTGCT 57.030 45.000 0.00 0.00 0.00 4.24
65 66 2.200373 ACAATCCACCCAACTGCTAC 57.800 50.000 0.00 0.00 0.00 3.58
66 67 1.705186 ACAATCCACCCAACTGCTACT 59.295 47.619 0.00 0.00 0.00 2.57
68 69 3.329520 ACAATCCACCCAACTGCTACTTA 59.670 43.478 0.00 0.00 0.00 2.24
69 70 3.914426 ATCCACCCAACTGCTACTTAG 57.086 47.619 0.00 0.00 0.00 2.18
70 71 2.616524 TCCACCCAACTGCTACTTAGT 58.383 47.619 0.00 0.00 0.00 2.24
71 72 3.781808 TCCACCCAACTGCTACTTAGTA 58.218 45.455 0.00 0.00 0.00 1.82
72 73 4.161876 TCCACCCAACTGCTACTTAGTAA 58.838 43.478 0.00 0.00 0.00 2.24
73 74 4.594062 TCCACCCAACTGCTACTTAGTAAA 59.406 41.667 0.00 0.00 0.00 2.01
74 75 5.072058 TCCACCCAACTGCTACTTAGTAAAA 59.928 40.000 0.00 0.00 0.00 1.52
77 78 7.305474 CACCCAACTGCTACTTAGTAAAAATG 58.695 38.462 0.00 0.00 0.00 2.32
78 79 6.433093 ACCCAACTGCTACTTAGTAAAAATGG 59.567 38.462 0.00 0.00 0.00 3.16
79 80 6.433093 CCCAACTGCTACTTAGTAAAAATGGT 59.567 38.462 0.00 0.00 0.00 3.55
80 81 7.608761 CCCAACTGCTACTTAGTAAAAATGGTA 59.391 37.037 0.00 0.00 0.00 3.25
81 82 9.005777 CCAACTGCTACTTAGTAAAAATGGTAA 57.994 33.333 0.00 0.00 0.00 2.85
86 87 9.849166 TGCTACTTAGTAAAAATGGTAAAATGC 57.151 29.630 0.00 0.00 0.00 3.56
87 88 9.849166 GCTACTTAGTAAAAATGGTAAAATGCA 57.151 29.630 0.00 0.00 0.00 3.96
104 105 0.323725 GCAAAGGCATCTTCCTCCCA 60.324 55.000 0.00 0.00 40.72 4.37
105 106 1.760192 CAAAGGCATCTTCCTCCCAG 58.240 55.000 0.00 0.00 34.82 4.45
110 1830 1.407989 GGCATCTTCCTCCCAGTGAAG 60.408 57.143 0.00 0.00 39.44 3.02
157 1887 5.066593 ACAGGTCCATCTCTTCTTTTGAAC 58.933 41.667 0.00 0.00 34.31 3.18
158 1888 5.065914 CAGGTCCATCTCTTCTTTTGAACA 58.934 41.667 0.00 0.00 34.31 3.18
177 1909 3.100671 ACAGAACAGGTCCATCTCTACC 58.899 50.000 0.00 0.00 35.91 3.18
181 1913 0.387202 CAGGTCCATCTCTACCAGCG 59.613 60.000 0.00 0.00 38.30 5.18
303 2048 4.181010 CCATGGCTCCCTGGTCGG 62.181 72.222 0.00 0.00 0.00 4.79
341 2091 1.337447 TGGCGCGCTTTAGTTTAGAGT 60.337 47.619 32.29 0.00 0.00 3.24
376 2126 4.679372 GCAAAGGCTTCTCGATCTACTCTT 60.679 45.833 0.00 0.00 36.96 2.85
377 2127 5.450688 GCAAAGGCTTCTCGATCTACTCTTA 60.451 44.000 0.00 0.00 36.96 2.10
378 2128 5.761165 AAGGCTTCTCGATCTACTCTTAC 57.239 43.478 0.00 0.00 0.00 2.34
379 2129 4.139038 AGGCTTCTCGATCTACTCTTACC 58.861 47.826 0.00 0.00 0.00 2.85
380 2130 3.884091 GGCTTCTCGATCTACTCTTACCA 59.116 47.826 0.00 0.00 0.00 3.25
423 2176 6.173339 CAGGTAAATCTCTTACCAAGCTCAA 58.827 40.000 14.45 0.00 45.23 3.02
552 2317 3.217626 GACCCAACATCCATCCATCTTC 58.782 50.000 0.00 0.00 0.00 2.87
661 2427 9.846248 GTTTCTCATGCTTATAAATTGTTCACT 57.154 29.630 0.00 0.00 0.00 3.41
662 2428 9.844790 TTTCTCATGCTTATAAATTGTTCACTG 57.155 29.630 0.00 0.00 0.00 3.66
930 2729 6.670027 AGCTTAAGGATCTCAAGAACTTCCTA 59.330 38.462 4.29 0.00 35.78 2.94
978 2777 0.461870 ACAACAGCGTGCAAGAGTGA 60.462 50.000 2.99 0.00 0.00 3.41
1062 2861 2.284625 ATGGAGCGGGGTCTGTCA 60.285 61.111 0.00 0.00 0.00 3.58
1073 2872 3.010420 GGGGTCTGTCAACTAAAGATGC 58.990 50.000 0.00 0.00 0.00 3.91
1191 2990 2.105466 CAAGGAGAGAAGCGCTGCC 61.105 63.158 12.58 6.27 0.00 4.85
1365 3164 4.914983 AGATCATGCTGAGTGAAAAGGAA 58.085 39.130 0.00 0.00 0.00 3.36
1366 3165 5.507637 AGATCATGCTGAGTGAAAAGGAAT 58.492 37.500 0.00 0.00 0.00 3.01
1371 3170 3.575256 TGCTGAGTGAAAAGGAATGCAAT 59.425 39.130 0.00 0.00 0.00 3.56
1372 3171 4.171754 GCTGAGTGAAAAGGAATGCAATC 58.828 43.478 0.00 0.00 0.00 2.67
1376 3175 3.512724 AGTGAAAAGGAATGCAATCCCAG 59.487 43.478 17.47 0.00 40.59 4.45
1400 3203 1.269174 CATGGTGTTCGCCATTGTTGA 59.731 47.619 14.24 0.00 46.33 3.18
1745 3551 6.829811 GTCACTACTAGAGATGAAAGGGTAGT 59.170 42.308 0.00 0.00 38.87 2.73
1763 3569 0.729690 GTTCGAGGGATGAAAGCTGC 59.270 55.000 0.00 0.00 0.00 5.25
1838 3644 5.163663 TGCTCAAGAAACAGGTTTGTAACTG 60.164 40.000 1.52 0.00 36.23 3.16
1882 3688 5.835113 TTACTGGCTCCATGCTTAATTTC 57.165 39.130 0.00 0.00 42.39 2.17
1883 3689 3.973425 ACTGGCTCCATGCTTAATTTCT 58.027 40.909 0.00 0.00 42.39 2.52
1944 3752 8.385491 TCTTATTGCATGATGGGTGTCTATATT 58.615 33.333 0.00 0.00 0.00 1.28
1964 3772 5.598416 ATTAAACTTTCCCAAGGCATAGC 57.402 39.130 0.00 0.00 33.82 2.97
1967 3775 2.728007 ACTTTCCCAAGGCATAGCTTC 58.272 47.619 0.00 0.00 33.82 3.86
1989 3797 5.918608 TCCAGAGATTTGTATCTTAGCCAC 58.081 41.667 0.00 0.00 41.23 5.01
2009 3817 8.644374 AGCCACTTCCATTTAATAAGTTGTAA 57.356 30.769 0.00 0.00 31.21 2.41
2047 3855 8.472007 TTTTGTATGGTGTCACCTTAGATTTT 57.528 30.769 22.56 1.11 39.58 1.82
2072 3881 3.199946 CCAAGGCCTTGTGATAACTAGGA 59.800 47.826 37.09 0.00 38.85 2.94
2074 3883 4.696479 AGGCCTTGTGATAACTAGGATG 57.304 45.455 14.41 0.00 0.00 3.51
2091 3900 1.726248 GATGCCGCATTGGTGTTTTTC 59.274 47.619 7.43 0.00 41.21 2.29
2092 3901 0.249657 TGCCGCATTGGTGTTTTTCC 60.250 50.000 0.00 0.00 41.21 3.13
2093 3902 0.033366 GCCGCATTGGTGTTTTTCCT 59.967 50.000 0.00 0.00 41.21 3.36
2094 3903 1.271102 GCCGCATTGGTGTTTTTCCTA 59.729 47.619 0.00 0.00 41.21 2.94
2095 3904 2.924880 GCCGCATTGGTGTTTTTCCTAC 60.925 50.000 0.00 0.00 41.21 3.18
2096 3905 2.294791 CCGCATTGGTGTTTTTCCTACA 59.705 45.455 0.00 0.00 0.00 2.74
2097 3906 3.056891 CCGCATTGGTGTTTTTCCTACAT 60.057 43.478 0.00 0.00 0.00 2.29
2098 3907 4.555262 CGCATTGGTGTTTTTCCTACATT 58.445 39.130 0.00 0.00 0.00 2.71
2099 3908 5.336055 CCGCATTGGTGTTTTTCCTACATTA 60.336 40.000 0.00 0.00 0.00 1.90
2100 3909 5.571357 CGCATTGGTGTTTTTCCTACATTAC 59.429 40.000 0.00 0.00 0.00 1.89
2101 3910 5.571357 GCATTGGTGTTTTTCCTACATTACG 59.429 40.000 0.00 0.00 0.00 3.18
2102 3911 6.568844 GCATTGGTGTTTTTCCTACATTACGA 60.569 38.462 0.00 0.00 0.00 3.43
2103 3912 7.535139 CATTGGTGTTTTTCCTACATTACGAT 58.465 34.615 0.00 0.00 0.00 3.73
2104 3913 6.489127 TGGTGTTTTTCCTACATTACGATG 57.511 37.500 0.00 0.00 39.25 3.84
2106 3915 6.487331 TGGTGTTTTTCCTACATTACGATGTT 59.513 34.615 0.00 0.00 43.92 2.71
2107 3916 7.660617 TGGTGTTTTTCCTACATTACGATGTTA 59.339 33.333 0.00 0.00 43.92 2.41
2108 3917 8.505625 GGTGTTTTTCCTACATTACGATGTTAA 58.494 33.333 0.00 0.00 43.92 2.01
2109 3918 9.537848 GTGTTTTTCCTACATTACGATGTTAAG 57.462 33.333 0.00 0.00 43.92 1.85
2110 3919 9.491675 TGTTTTTCCTACATTACGATGTTAAGA 57.508 29.630 0.00 0.00 43.92 2.10
2113 3922 9.491675 TTTTCCTACATTACGATGTTAAGAACA 57.508 29.630 0.00 0.00 43.92 3.18
2122 3931 1.890876 TGTTAAGAACATGTGCGCCT 58.109 45.000 4.18 0.00 36.25 5.52
2123 3932 2.226330 TGTTAAGAACATGTGCGCCTT 58.774 42.857 4.18 0.90 36.25 4.35
2124 3933 2.621055 TGTTAAGAACATGTGCGCCTTT 59.379 40.909 4.18 0.00 36.25 3.11
2125 3934 3.234386 GTTAAGAACATGTGCGCCTTTC 58.766 45.455 4.18 0.00 0.00 2.62
2126 3935 0.598065 AAGAACATGTGCGCCTTTCC 59.402 50.000 4.18 0.00 0.00 3.13
2127 3936 0.250901 AGAACATGTGCGCCTTTCCT 60.251 50.000 4.18 0.00 0.00 3.36
2128 3937 0.598065 GAACATGTGCGCCTTTCCTT 59.402 50.000 4.18 0.00 0.00 3.36
2129 3938 0.314935 AACATGTGCGCCTTTCCTTG 59.685 50.000 4.18 0.00 0.00 3.61
2130 3939 1.213537 CATGTGCGCCTTTCCTTGG 59.786 57.895 4.18 0.00 0.00 3.61
2131 3940 1.074775 ATGTGCGCCTTTCCTTGGA 59.925 52.632 4.18 0.00 0.00 3.53
2132 3941 0.539438 ATGTGCGCCTTTCCTTGGAA 60.539 50.000 4.18 0.00 0.00 3.53
2133 3942 0.539438 TGTGCGCCTTTCCTTGGAAT 60.539 50.000 4.18 0.00 0.00 3.01
2134 3943 1.271652 TGTGCGCCTTTCCTTGGAATA 60.272 47.619 4.18 0.00 0.00 1.75
2135 3944 1.401905 GTGCGCCTTTCCTTGGAATAG 59.598 52.381 4.18 4.30 0.00 1.73
2136 3945 1.280710 TGCGCCTTTCCTTGGAATAGA 59.719 47.619 4.18 0.00 0.00 1.98
2137 3946 2.092429 TGCGCCTTTCCTTGGAATAGAT 60.092 45.455 4.18 0.00 0.00 1.98
2138 3947 2.291741 GCGCCTTTCCTTGGAATAGATG 59.708 50.000 0.00 2.41 0.00 2.90
2139 3948 2.880890 CGCCTTTCCTTGGAATAGATGG 59.119 50.000 2.65 3.13 0.00 3.51
2140 3949 3.433598 CGCCTTTCCTTGGAATAGATGGA 60.434 47.826 2.65 0.00 0.00 3.41
2141 3950 4.734266 GCCTTTCCTTGGAATAGATGGAT 58.266 43.478 2.65 0.00 0.00 3.41
2142 3951 5.143369 GCCTTTCCTTGGAATAGATGGATT 58.857 41.667 2.65 0.00 0.00 3.01
2143 3952 5.010415 GCCTTTCCTTGGAATAGATGGATTG 59.990 44.000 2.65 0.00 0.00 2.67
2144 3953 5.537674 CCTTTCCTTGGAATAGATGGATTGG 59.462 44.000 2.65 0.00 0.00 3.16
2145 3954 5.732331 TTCCTTGGAATAGATGGATTGGT 57.268 39.130 0.00 0.00 0.00 3.67
2146 3955 5.052693 TCCTTGGAATAGATGGATTGGTG 57.947 43.478 0.00 0.00 0.00 4.17
2147 3956 4.141181 TCCTTGGAATAGATGGATTGGTGG 60.141 45.833 0.00 0.00 0.00 4.61
2151 3960 2.965671 ATAGATGGATTGGTGGCCTG 57.034 50.000 3.32 0.00 0.00 4.85
2161 3970 1.484038 TGGTGGCCTGATAATTTGGC 58.516 50.000 3.32 0.00 45.42 4.52
2226 4307 6.003950 ACATGGACACTATAATTATGCCACC 58.996 40.000 8.28 6.04 0.00 4.61
2232 4313 5.588648 ACACTATAATTATGCCACCACACAC 59.411 40.000 8.28 0.00 0.00 3.82
2233 4314 5.588246 CACTATAATTATGCCACCACACACA 59.412 40.000 8.28 0.00 0.00 3.72
2322 4403 8.964420 AATTCGTTATGTGTTGATAAAACTGG 57.036 30.769 0.00 0.00 0.00 4.00
2390 4473 6.255215 CCACATGTATCATTTTTCGTGGTAC 58.745 40.000 0.00 0.00 38.26 3.34
2403 4486 5.821516 TTCGTGGTACATTGAAAACAGTT 57.178 34.783 0.00 0.00 44.52 3.16
2482 4565 5.971202 GTGTGCGAGTAAAATTCCCATATTG 59.029 40.000 0.00 0.00 0.00 1.90
2533 4618 1.347707 CCTTGGGAACACACTAGCAGA 59.652 52.381 0.00 0.00 42.67 4.26
2540 4625 3.367498 GGAACACACTAGCAGACACTAGG 60.367 52.174 0.00 0.00 43.34 3.02
2547 4632 1.197430 AGCAGACACTAGGCCAAGCT 61.197 55.000 5.01 0.00 0.00 3.74
2548 4633 1.023513 GCAGACACTAGGCCAAGCTG 61.024 60.000 5.01 4.59 0.00 4.24
2589 4674 3.636231 TCAGCAGTTGGGGTCGGG 61.636 66.667 0.00 0.00 0.00 5.14
2593 4678 2.347490 CAGTTGGGGTCGGGACAG 59.653 66.667 0.75 0.00 0.00 3.51
2596 4681 2.122324 TTGGGGTCGGGACAGGAA 60.122 61.111 0.75 0.00 0.00 3.36
2639 4726 8.585881 TCCTTGAATTGTACTATCTAGTATGGC 58.414 37.037 0.69 0.00 40.55 4.40
2640 4727 8.589338 CCTTGAATTGTACTATCTAGTATGGCT 58.411 37.037 0.69 0.00 40.55 4.75
2641 4728 9.988815 CTTGAATTGTACTATCTAGTATGGCTT 57.011 33.333 0.69 0.00 40.55 4.35
2654 4741 9.950496 ATCTAGTATGGCTTTATACAAGATTGG 57.050 33.333 0.00 0.00 36.27 3.16
2655 4742 8.934697 TCTAGTATGGCTTTATACAAGATTGGT 58.065 33.333 0.00 0.00 36.27 3.67
2658 4745 8.157476 AGTATGGCTTTATACAAGATTGGTAGG 58.843 37.037 0.00 0.00 36.27 3.18
2659 4746 6.321821 TGGCTTTATACAAGATTGGTAGGT 57.678 37.500 0.00 0.00 0.00 3.08
2660 4747 6.354130 TGGCTTTATACAAGATTGGTAGGTC 58.646 40.000 0.00 0.00 0.00 3.85
2661 4748 5.465724 GGCTTTATACAAGATTGGTAGGTCG 59.534 44.000 0.00 0.00 0.00 4.79
2662 4749 6.047231 GCTTTATACAAGATTGGTAGGTCGT 58.953 40.000 0.00 0.00 0.00 4.34
2663 4750 7.205297 GCTTTATACAAGATTGGTAGGTCGTA 58.795 38.462 0.00 0.00 0.00 3.43
2664 4751 7.871463 GCTTTATACAAGATTGGTAGGTCGTAT 59.129 37.037 0.00 0.00 0.00 3.06
2665 4752 9.408069 CTTTATACAAGATTGGTAGGTCGTATC 57.592 37.037 0.00 0.00 0.00 2.24
2666 4753 6.971726 ATACAAGATTGGTAGGTCGTATCA 57.028 37.500 0.00 0.00 0.00 2.15
2667 4754 5.007385 ACAAGATTGGTAGGTCGTATCAC 57.993 43.478 0.00 0.00 0.00 3.06
2668 4755 4.464951 ACAAGATTGGTAGGTCGTATCACA 59.535 41.667 0.00 0.00 0.00 3.58
2669 4756 4.650754 AGATTGGTAGGTCGTATCACAC 57.349 45.455 0.00 0.00 0.00 3.82
2670 4757 4.279145 AGATTGGTAGGTCGTATCACACT 58.721 43.478 0.00 0.00 0.00 3.55
2671 4758 5.443283 AGATTGGTAGGTCGTATCACACTA 58.557 41.667 0.00 0.00 0.00 2.74
2672 4759 5.531659 AGATTGGTAGGTCGTATCACACTAG 59.468 44.000 0.00 0.00 0.00 2.57
2673 4760 3.548770 TGGTAGGTCGTATCACACTAGG 58.451 50.000 0.00 0.00 0.00 3.02
2674 4761 3.200605 TGGTAGGTCGTATCACACTAGGA 59.799 47.826 0.00 0.00 0.00 2.94
2675 4762 4.141321 TGGTAGGTCGTATCACACTAGGAT 60.141 45.833 0.00 0.00 0.00 3.24
2676 4763 4.826183 GGTAGGTCGTATCACACTAGGATT 59.174 45.833 0.00 0.00 0.00 3.01
2677 4764 6.000219 GGTAGGTCGTATCACACTAGGATTA 59.000 44.000 0.00 0.00 0.00 1.75
2678 4765 6.149142 GGTAGGTCGTATCACACTAGGATTAG 59.851 46.154 0.00 0.00 0.00 1.73
2679 4766 5.938279 AGGTCGTATCACACTAGGATTAGA 58.062 41.667 0.00 0.00 0.00 2.10
2680 4767 5.998981 AGGTCGTATCACACTAGGATTAGAG 59.001 44.000 0.00 0.00 0.00 2.43
2681 4768 5.764192 GGTCGTATCACACTAGGATTAGAGT 59.236 44.000 0.00 0.00 31.90 3.24
2682 4769 6.262720 GGTCGTATCACACTAGGATTAGAGTT 59.737 42.308 0.00 0.00 29.67 3.01
2683 4770 7.443575 GGTCGTATCACACTAGGATTAGAGTTA 59.556 40.741 0.00 0.00 29.67 2.24
2684 4771 9.001542 GTCGTATCACACTAGGATTAGAGTTAT 57.998 37.037 0.00 0.00 29.67 1.89
2685 4772 9.217278 TCGTATCACACTAGGATTAGAGTTATC 57.783 37.037 0.00 0.00 29.67 1.75
2686 4773 8.452534 CGTATCACACTAGGATTAGAGTTATCC 58.547 40.741 0.00 0.00 41.59 2.59
2687 4774 7.784470 ATCACACTAGGATTAGAGTTATCCC 57.216 40.000 0.00 0.00 42.12 3.85
2688 4775 6.923670 TCACACTAGGATTAGAGTTATCCCT 58.076 40.000 0.00 0.00 42.12 4.20
2689 4776 6.778069 TCACACTAGGATTAGAGTTATCCCTG 59.222 42.308 0.00 0.00 42.12 4.45
2690 4777 5.540719 ACACTAGGATTAGAGTTATCCCTGC 59.459 44.000 0.00 0.00 42.12 4.85
2691 4778 5.777732 CACTAGGATTAGAGTTATCCCTGCT 59.222 44.000 0.00 0.00 42.12 4.24
2692 4779 6.268847 CACTAGGATTAGAGTTATCCCTGCTT 59.731 42.308 0.00 0.00 42.12 3.91
2693 4780 6.847036 ACTAGGATTAGAGTTATCCCTGCTTT 59.153 38.462 0.00 0.00 42.12 3.51
2703 4790 2.746279 TCCCTGCTTTGAGTTTGGAA 57.254 45.000 0.00 0.00 0.00 3.53
2715 4802 5.630415 TGAGTTTGGAATCCCCACTATAG 57.370 43.478 0.00 0.00 46.62 1.31
2767 4855 9.646427 CTCAAGCTACTAACAAAGATTAGTCTT 57.354 33.333 1.59 0.00 46.50 3.01
2777 4865 7.981102 ACAAAGATTAGTCTTGTCCCTAAAC 57.019 36.000 0.66 0.00 43.80 2.01
2778 4866 7.746703 ACAAAGATTAGTCTTGTCCCTAAACT 58.253 34.615 0.66 0.00 43.80 2.66
2782 4870 5.997384 TTAGTCTTGTCCCTAAACTCTCC 57.003 43.478 0.00 0.00 0.00 3.71
2804 4892 3.054875 CCTCATCCTCTGATCCACACAAA 60.055 47.826 0.00 0.00 32.10 2.83
2833 4921 9.431887 CTAACAAGAGCATTAAGTTACCTTGTA 57.568 33.333 0.00 0.00 40.96 2.41
2839 4927 8.329502 AGAGCATTAAGTTACCTTGTATCCTTT 58.670 33.333 0.00 0.00 31.89 3.11
2850 4938 6.314917 ACCTTGTATCCTTTCAAAATCTGGT 58.685 36.000 0.00 0.00 0.00 4.00
2851 4939 7.466804 ACCTTGTATCCTTTCAAAATCTGGTA 58.533 34.615 0.00 0.00 0.00 3.25
3001 5141 3.237268 AGCAAGGTGGTATTGTTTCCA 57.763 42.857 0.00 0.00 0.00 3.53
3118 5284 1.162800 GCTGGTCGCTTCCATGATCC 61.163 60.000 0.00 0.00 36.84 3.36
3133 5299 0.868406 GATCCCGACATCCAAATCGC 59.132 55.000 0.00 0.00 37.01 4.58
3138 5304 0.247262 CGACATCCAAATCGCACACG 60.247 55.000 0.00 0.00 42.01 4.49
3177 5696 1.453379 CCAAGCCATCTCCTGCCTG 60.453 63.158 0.00 0.00 0.00 4.85
3221 5740 1.767036 CCCACCTTGTCATCCACCA 59.233 57.895 0.00 0.00 0.00 4.17
3257 5776 1.786575 CGTTGTCGTGCCATCAAATCG 60.787 52.381 0.00 0.00 0.00 3.34
3353 5872 2.976882 ACCAGCCCACTAGTTGTCTTAA 59.023 45.455 0.00 0.00 0.00 1.85
3354 5873 3.244457 ACCAGCCCACTAGTTGTCTTAAC 60.244 47.826 0.00 0.00 0.00 2.01
3355 5874 3.244422 CCAGCCCACTAGTTGTCTTAACA 60.244 47.826 0.00 0.00 0.00 2.41
3356 5875 3.746492 CAGCCCACTAGTTGTCTTAACAC 59.254 47.826 0.00 0.00 34.35 3.32
3357 5876 3.072211 GCCCACTAGTTGTCTTAACACC 58.928 50.000 0.00 0.00 34.35 4.16
3358 5877 3.671716 CCCACTAGTTGTCTTAACACCC 58.328 50.000 0.00 0.00 34.35 4.61
3359 5878 3.558533 CCCACTAGTTGTCTTAACACCCC 60.559 52.174 0.00 0.00 34.35 4.95
3360 5879 3.558533 CCACTAGTTGTCTTAACACCCCC 60.559 52.174 0.00 0.00 34.35 5.40
3361 5880 3.326880 CACTAGTTGTCTTAACACCCCCT 59.673 47.826 0.00 0.00 34.35 4.79
3362 5881 3.581770 ACTAGTTGTCTTAACACCCCCTC 59.418 47.826 0.00 0.00 34.35 4.30
3363 5882 1.703513 AGTTGTCTTAACACCCCCTCC 59.296 52.381 0.00 0.00 34.35 4.30
3364 5883 1.069775 TTGTCTTAACACCCCCTCCC 58.930 55.000 0.00 0.00 34.35 4.30
3418 5946 1.619977 CCCTACCTCTACCACTGCACT 60.620 57.143 0.00 0.00 0.00 4.40
3419 5947 1.478510 CCTACCTCTACCACTGCACTG 59.521 57.143 0.00 0.00 0.00 3.66
3426 5954 2.028112 TCTACCACTGCACTGAACCATC 60.028 50.000 0.00 0.00 0.00 3.51
3449 5977 2.426024 CGTCTAAATCCCCTCTCAACGA 59.574 50.000 0.00 0.00 0.00 3.85
3526 6054 8.885494 ATCAATAATCAGCTAGAACAGAAGTC 57.115 34.615 0.00 0.00 0.00 3.01
3527 6055 8.072321 TCAATAATCAGCTAGAACAGAAGTCT 57.928 34.615 0.00 0.00 0.00 3.24
3528 6056 8.535335 TCAATAATCAGCTAGAACAGAAGTCTT 58.465 33.333 0.00 0.00 0.00 3.01
3529 6057 9.809096 CAATAATCAGCTAGAACAGAAGTCTTA 57.191 33.333 0.00 0.00 0.00 2.10
3532 6060 8.940768 AATCAGCTAGAACAGAAGTCTTAATC 57.059 34.615 0.00 0.00 0.00 1.75
3533 6061 7.710676 TCAGCTAGAACAGAAGTCTTAATCT 57.289 36.000 0.00 0.00 0.00 2.40
3535 6063 8.031864 TCAGCTAGAACAGAAGTCTTAATCTTG 58.968 37.037 0.00 0.00 0.00 3.02
3656 7462 4.853924 ATTTGTTGGGAGAATGTGTGTC 57.146 40.909 0.00 0.00 0.00 3.67
3708 7552 9.019764 GGATACAAATTTTGGTTCGTATTGATG 57.980 33.333 13.42 0.00 34.12 3.07
3825 9207 5.133221 ACCCTTCAGTGCCATGTAATATTC 58.867 41.667 0.00 0.00 0.00 1.75
3840 9222 9.950680 CATGTAATATTCCTCCACACAATTAAC 57.049 33.333 0.00 0.00 0.00 2.01
3881 9263 7.605691 AGTGCTATAGATGATAAACATGAAGGC 59.394 37.037 3.21 0.00 39.56 4.35
4048 9430 2.897350 GAGCTACATGCACCGGGC 60.897 66.667 6.32 7.25 45.94 6.13
4135 9538 6.581171 TGTTATGGTGCATGTTTGATGTTA 57.419 33.333 0.00 0.00 0.00 2.41
4138 9541 5.981088 ATGGTGCATGTTTGATGTTAGAA 57.019 34.783 0.00 0.00 0.00 2.10
4139 9542 5.981088 TGGTGCATGTTTGATGTTAGAAT 57.019 34.783 0.00 0.00 0.00 2.40
4141 9544 4.563976 GGTGCATGTTTGATGTTAGAATGC 59.436 41.667 0.00 0.00 39.44 3.56
4142 9545 5.404946 GTGCATGTTTGATGTTAGAATGCT 58.595 37.500 6.33 0.00 39.65 3.79
4144 9547 7.028962 GTGCATGTTTGATGTTAGAATGCTTA 58.971 34.615 6.33 0.00 39.65 3.09
4146 9549 6.195244 GCATGTTTGATGTTAGAATGCTTACG 59.805 38.462 0.00 0.00 36.78 3.18
4148 9551 6.598525 TGTTTGATGTTAGAATGCTTACGTG 58.401 36.000 0.00 0.00 0.00 4.49
4153 9556 4.430007 TGTTAGAATGCTTACGTGCTAGG 58.570 43.478 0.00 0.00 0.00 3.02
4155 9558 5.125900 TGTTAGAATGCTTACGTGCTAGGTA 59.874 40.000 0.00 0.00 0.00 3.08
4156 9559 4.939052 AGAATGCTTACGTGCTAGGTAT 57.061 40.909 0.00 0.00 0.00 2.73
4157 9560 5.277857 AGAATGCTTACGTGCTAGGTATT 57.722 39.130 0.00 0.00 0.00 1.89
4158 9561 5.671493 AGAATGCTTACGTGCTAGGTATTT 58.329 37.500 0.00 0.00 0.00 1.40
4159 9562 5.753921 AGAATGCTTACGTGCTAGGTATTTC 59.246 40.000 0.00 0.00 0.00 2.17
4160 9563 4.459390 TGCTTACGTGCTAGGTATTTCA 57.541 40.909 0.00 0.00 0.00 2.69
4179 9582 2.292292 TCAACTCACATCAACGTCTCGA 59.708 45.455 0.00 0.00 0.00 4.04
4243 9658 5.588648 CACTAACTGGTCCTTTTCTTTCACA 59.411 40.000 0.00 0.00 0.00 3.58
4269 9689 8.621532 AGCTCATTGTTGACTAAATAGAACAA 57.378 30.769 8.84 8.84 41.27 2.83
4318 9825 3.160679 AGGCAAACTGCTTCTTATGGT 57.839 42.857 0.00 0.00 44.28 3.55
4333 9840 7.362920 GCTTCTTATGGTCTTCATTGGCTTAAA 60.363 37.037 0.00 0.00 37.30 1.52
4458 9965 4.256920 CTGTGAAAGTAATGGGAGGACTG 58.743 47.826 0.00 0.00 0.00 3.51
4479 9986 5.083533 TGTTGTGTCAGAAAGGCAAAAAT 57.916 34.783 0.00 0.00 29.05 1.82
4704 10214 2.235650 TCATGGCTCAGAAGACTTGGAG 59.764 50.000 8.47 8.47 36.54 3.86
4778 10288 4.032900 GCCAAATACACAGTACATGAGTCG 59.967 45.833 0.00 0.00 34.33 4.18
4783 10293 6.701145 ATACACAGTACATGAGTCGATCTT 57.299 37.500 0.00 0.00 34.33 2.40
4890 10401 8.850454 TTAGTTTTGTTAGCAAGCTTAAAGTG 57.150 30.769 0.00 0.00 35.82 3.16
4900 10411 6.337356 AGCAAGCTTAAAGTGCAAAAGTTTA 58.663 32.000 9.84 0.00 40.83 2.01
4963 10599 5.221783 GGGTTAGACTGGAGTTCCTTACAAA 60.222 44.000 0.00 0.00 36.82 2.83
4971 10607 5.010933 TGGAGTTCCTTACAAACACAACAA 58.989 37.500 0.00 0.00 36.82 2.83
5108 10744 6.384224 TGCTTGAATCTTTGCATAAACTCAG 58.616 36.000 0.00 0.00 0.00 3.35
5269 11250 3.386402 AGAGCAGCTAAGGTATCTTGACC 59.614 47.826 0.00 0.00 40.08 4.02
5299 11280 8.621286 GGGAAACAAATATAAGTGACATACCTG 58.379 37.037 0.00 0.00 0.00 4.00
5433 11414 6.595682 TCTTGGAATAGATGGATTGGAGAAC 58.404 40.000 0.00 0.00 0.00 3.01
5450 11431 5.176592 GGAGAACGTAACTGCTTCCTTATT 58.823 41.667 6.87 0.00 0.00 1.40
5451 11432 6.071221 TGGAGAACGTAACTGCTTCCTTATTA 60.071 38.462 13.26 0.00 0.00 0.98
5452 11433 6.985059 GGAGAACGTAACTGCTTCCTTATTAT 59.015 38.462 6.87 0.00 0.00 1.28
5453 11434 7.494952 GGAGAACGTAACTGCTTCCTTATTATT 59.505 37.037 6.87 0.00 0.00 1.40
5457 11438 7.498443 ACGTAACTGCTTCCTTATTATTAGCT 58.502 34.615 0.00 0.00 33.15 3.32
5458 11439 7.985752 ACGTAACTGCTTCCTTATTATTAGCTT 59.014 33.333 0.00 0.00 33.15 3.74
5459 11440 8.276325 CGTAACTGCTTCCTTATTATTAGCTTG 58.724 37.037 0.00 0.00 33.15 4.01
5460 11441 9.110502 GTAACTGCTTCCTTATTATTAGCTTGT 57.889 33.333 0.00 0.00 33.15 3.16
5474 11463 2.609747 AGCTTGTAGGTGAGAAGGTGA 58.390 47.619 0.00 0.00 37.73 4.02
5491 11480 6.615726 AGAAGGTGAATCTTACCAGGCTATTA 59.384 38.462 0.00 0.00 40.74 0.98
5581 11573 2.293399 GCAACAACGAATGGAGAAGGTT 59.707 45.455 0.00 0.00 0.00 3.50
5594 11586 3.441922 GGAGAAGGTTTTTGATGAGCTCC 59.558 47.826 12.15 0.00 33.45 4.70
5623 11615 4.878397 CCGCTCAGGTTAGAAAATCTTGAT 59.122 41.667 0.00 0.00 34.51 2.57
5763 11874 1.673665 GCTTGTGTCAGCTCCCCTG 60.674 63.158 0.00 0.00 43.17 4.45
5821 11932 1.981256 AGCGTGTTGGACCAGATTTT 58.019 45.000 0.00 0.00 0.00 1.82
5889 12000 3.188048 GCTGCATTTCCGAGATTGGATAG 59.812 47.826 0.00 0.00 38.00 2.08
5894 12005 3.685139 TTCCGAGATTGGATAGGATGC 57.315 47.619 0.00 0.00 38.00 3.91
5897 12008 3.070018 CCGAGATTGGATAGGATGCAAC 58.930 50.000 0.00 0.00 43.41 4.17
5942 12053 2.224159 TGGGAGTGGGAGGAGCAAC 61.224 63.158 0.00 0.00 0.00 4.17
6016 12127 3.721706 CTTCCTCCCGGCCTTGCT 61.722 66.667 0.00 0.00 0.00 3.91
6020 12131 3.721706 CTCCCGGCCTTGCTTCCT 61.722 66.667 0.00 0.00 0.00 3.36
6045 12156 4.812626 GGCAAGGGCTTTGAATGAATTATG 59.187 41.667 14.11 0.00 39.21 1.90
6060 12171 7.601073 ATGAATTATGCATATACTGTGTCCG 57.399 36.000 7.36 0.00 0.00 4.79
6110 12221 1.554160 CTCTGGTTGAGCTGGATCTGT 59.446 52.381 0.00 0.00 35.84 3.41
6187 12298 2.270986 CGAAGGCTGCCCAAAGCTT 61.271 57.895 16.57 0.95 43.06 3.74
6235 12346 1.066303 CAGAGGCTCATACTCACGGAC 59.934 57.143 18.26 0.00 37.43 4.79
6247 12358 4.124851 ACTCACGGACAAAGATATGGAC 57.875 45.455 0.00 0.00 0.00 4.02
6250 12361 3.513912 TCACGGACAAAGATATGGACACT 59.486 43.478 0.00 0.00 0.00 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 2.509336 CGCCGACATGGACAGGTC 60.509 66.667 7.01 7.01 42.00 3.85
12 13 0.806102 CCTAACGCCGACATGGACAG 60.806 60.000 0.00 0.00 42.00 3.51
14 15 2.171725 GCCTAACGCCGACATGGAC 61.172 63.158 0.00 0.00 42.00 4.02
26 27 5.449107 TGTTATCTAGATCCACGCCTAAC 57.551 43.478 8.95 6.18 0.00 2.34
27 28 6.295123 GGATTGTTATCTAGATCCACGCCTAA 60.295 42.308 8.95 0.00 38.32 2.69
28 29 5.185249 GGATTGTTATCTAGATCCACGCCTA 59.815 44.000 8.95 0.00 38.32 3.93
29 30 4.021016 GGATTGTTATCTAGATCCACGCCT 60.021 45.833 8.95 0.00 38.32 5.52
30 31 4.246458 GGATTGTTATCTAGATCCACGCC 58.754 47.826 8.95 7.50 38.32 5.68
31 32 4.883083 TGGATTGTTATCTAGATCCACGC 58.117 43.478 8.95 2.52 42.21 5.34
36 37 6.708054 CAGTTGGGTGGATTGTTATCTAGATC 59.292 42.308 8.95 0.00 0.00 2.75
37 38 6.595682 CAGTTGGGTGGATTGTTATCTAGAT 58.404 40.000 10.73 10.73 0.00 1.98
38 39 5.629133 GCAGTTGGGTGGATTGTTATCTAGA 60.629 44.000 0.00 0.00 0.00 2.43
40 41 4.227300 AGCAGTTGGGTGGATTGTTATCTA 59.773 41.667 0.00 0.00 0.00 1.98
42 43 3.356290 AGCAGTTGGGTGGATTGTTATC 58.644 45.455 0.00 0.00 0.00 1.75
43 44 3.456380 AGCAGTTGGGTGGATTGTTAT 57.544 42.857 0.00 0.00 0.00 1.89
45 46 2.108250 AGTAGCAGTTGGGTGGATTGTT 59.892 45.455 0.00 0.00 0.00 2.83
46 47 1.705186 AGTAGCAGTTGGGTGGATTGT 59.295 47.619 0.00 0.00 0.00 2.71
47 48 2.496899 AGTAGCAGTTGGGTGGATTG 57.503 50.000 0.00 0.00 0.00 2.67
48 49 3.587506 ACTAAGTAGCAGTTGGGTGGATT 59.412 43.478 0.00 0.00 0.00 3.01
49 50 3.182152 ACTAAGTAGCAGTTGGGTGGAT 58.818 45.455 0.00 0.00 0.00 3.41
51 52 4.546829 TTACTAAGTAGCAGTTGGGTGG 57.453 45.455 0.00 0.00 0.00 4.61
52 53 6.870971 TTTTTACTAAGTAGCAGTTGGGTG 57.129 37.500 0.00 0.00 0.00 4.61
53 54 6.433093 CCATTTTTACTAAGTAGCAGTTGGGT 59.567 38.462 0.00 0.00 0.00 4.51
54 55 6.433093 ACCATTTTTACTAAGTAGCAGTTGGG 59.567 38.462 0.00 0.00 0.00 4.12
60 61 9.849166 GCATTTTACCATTTTTACTAAGTAGCA 57.151 29.630 0.00 0.00 0.00 3.49
61 62 9.849166 TGCATTTTACCATTTTTACTAAGTAGC 57.151 29.630 0.00 0.00 0.00 3.58
66 67 8.994170 GCCTTTGCATTTTACCATTTTTACTAA 58.006 29.630 0.00 0.00 37.47 2.24
68 69 6.995091 TGCCTTTGCATTTTACCATTTTTACT 59.005 30.769 0.00 0.00 44.23 2.24
69 70 7.195839 TGCCTTTGCATTTTACCATTTTTAC 57.804 32.000 0.00 0.00 44.23 2.01
85 86 0.323725 TGGGAGGAAGATGCCTTTGC 60.324 55.000 0.00 0.00 38.73 3.68
86 87 1.005215 ACTGGGAGGAAGATGCCTTTG 59.995 52.381 0.00 0.00 38.73 2.77
87 88 1.005215 CACTGGGAGGAAGATGCCTTT 59.995 52.381 0.00 0.00 38.73 3.11
88 89 0.622665 CACTGGGAGGAAGATGCCTT 59.377 55.000 0.00 0.00 38.73 4.35
89 90 0.252881 TCACTGGGAGGAAGATGCCT 60.253 55.000 0.00 0.00 42.17 4.75
90 91 0.620556 TTCACTGGGAGGAAGATGCC 59.379 55.000 0.00 0.00 0.00 4.40
93 94 2.836981 CAGACTTCACTGGGAGGAAGAT 59.163 50.000 8.25 0.00 42.39 2.40
95 96 1.338579 GCAGACTTCACTGGGAGGAAG 60.339 57.143 0.00 0.00 44.68 3.46
97 98 0.471780 TGCAGACTTCACTGGGAGGA 60.472 55.000 0.00 0.00 38.22 3.71
98 99 0.617413 ATGCAGACTTCACTGGGAGG 59.383 55.000 0.00 0.00 38.22 4.30
99 100 2.499289 AGTATGCAGACTTCACTGGGAG 59.501 50.000 8.51 0.00 38.22 4.30
100 101 2.540383 AGTATGCAGACTTCACTGGGA 58.460 47.619 8.51 0.00 38.22 4.37
101 102 3.449018 AGTAGTATGCAGACTTCACTGGG 59.551 47.826 20.67 0.00 38.22 4.45
102 103 4.428209 CAGTAGTATGCAGACTTCACTGG 58.572 47.826 26.28 14.06 34.47 4.00
104 105 4.116747 GCAGTAGTATGCAGACTTCACT 57.883 45.455 20.67 14.90 45.77 3.41
157 1887 3.099905 TGGTAGAGATGGACCTGTTCTG 58.900 50.000 0.00 0.00 0.00 3.02
158 1888 3.370104 CTGGTAGAGATGGACCTGTTCT 58.630 50.000 0.00 0.00 0.00 3.01
177 1909 1.703438 GATGCAGAACTGGCTCGCTG 61.703 60.000 3.99 0.00 0.00 5.18
181 1913 2.941720 CCTAAAGATGCAGAACTGGCTC 59.058 50.000 3.99 0.00 0.00 4.70
341 2091 0.525761 GCCTTTGCTTGCGGTGATTA 59.474 50.000 0.00 0.00 33.53 1.75
380 2130 5.890444 CCTGCAATAGGGAGCATGAGCTT 62.890 52.174 0.00 0.00 45.84 3.74
423 2176 9.700831 AAAAATGTAGGCAGATAAAGATAACCT 57.299 29.630 0.00 0.00 0.00 3.50
552 2317 4.081420 CAGAGGGGATCCGATATTACCTTG 60.081 50.000 5.45 2.96 38.33 3.61
661 2427 7.011389 GCACTAGAATGCTAACATGATTACACA 59.989 37.037 0.00 0.00 42.62 3.72
662 2428 7.011389 TGCACTAGAATGCTAACATGATTACAC 59.989 37.037 0.00 0.00 46.28 2.90
978 2777 4.711949 CGCTTGAGCTGGGCCACT 62.712 66.667 0.00 5.04 39.32 4.00
1062 2861 0.328258 AGCACCCCGCATCTTTAGTT 59.672 50.000 0.00 0.00 46.13 2.24
1191 2990 4.227864 ACCAAGAGGGATGAAGCTAAAG 57.772 45.455 0.00 0.00 41.15 1.85
1366 3165 0.032912 ACCATGATGCTGGGATTGCA 60.033 50.000 0.00 0.00 44.95 4.08
1371 3170 0.392863 CGAACACCATGATGCTGGGA 60.393 55.000 0.00 0.00 40.85 4.37
1372 3171 1.996786 GCGAACACCATGATGCTGGG 61.997 60.000 0.00 0.00 40.85 4.45
1376 3175 3.589579 TGGCGAACACCATGATGC 58.410 55.556 0.00 0.00 33.75 3.91
1400 3203 0.744414 CTTGCCGATTCCACCGACAT 60.744 55.000 0.00 0.00 0.00 3.06
1472 3275 5.499313 TGATGCTCAACCATATTGTCTTCA 58.501 37.500 0.00 0.00 0.00 3.02
1621 3427 5.220710 ACATCATCTAGCACCAGGAATAC 57.779 43.478 0.00 0.00 0.00 1.89
1745 3551 0.740868 CGCAGCTTTCATCCCTCGAA 60.741 55.000 0.00 0.00 0.00 3.71
1763 3569 1.079405 ACATGGTGGTACGGAAGCG 60.079 57.895 0.00 0.00 0.00 4.68
1770 3576 4.223320 CAACTTGTTGACATGGTGGTAC 57.777 45.455 7.66 0.00 35.73 3.34
1883 3689 9.827198 ACTAGAGTAGCCTTACTATCTCTACTA 57.173 37.037 0.00 0.00 40.21 1.82
1944 3752 4.316025 AGCTATGCCTTGGGAAAGTTTA 57.684 40.909 0.00 0.00 0.00 2.01
1964 3772 6.481644 GTGGCTAAGATACAAATCTCTGGAAG 59.518 42.308 0.00 0.00 41.81 3.46
1967 3775 5.923204 AGTGGCTAAGATACAAATCTCTGG 58.077 41.667 0.00 0.00 41.81 3.86
2009 3817 5.351465 CACCATACAAAAGCTAGAATGACGT 59.649 40.000 0.00 0.00 0.00 4.34
2015 3823 5.001232 GGTGACACCATACAAAAGCTAGAA 58.999 41.667 20.14 0.00 38.42 2.10
2047 3855 4.112634 AGTTATCACAAGGCCTTGGAAA 57.887 40.909 41.04 28.38 44.45 3.13
2057 3866 2.802816 GCGGCATCCTAGTTATCACAAG 59.197 50.000 0.00 0.00 0.00 3.16
2061 3870 3.402110 CAATGCGGCATCCTAGTTATCA 58.598 45.455 16.98 0.00 0.00 2.15
2072 3881 1.607767 GGAAAAACACCAATGCGGCAT 60.608 47.619 10.23 10.23 39.03 4.40
2074 3883 0.033366 AGGAAAAACACCAATGCGGC 59.967 50.000 0.00 0.00 39.03 6.53
2103 3912 1.890876 AGGCGCACATGTTCTTAACA 58.109 45.000 10.83 0.00 46.94 2.41
2104 3913 2.989422 AAGGCGCACATGTTCTTAAC 57.011 45.000 10.83 0.00 0.00 2.01
2105 3914 2.227865 GGAAAGGCGCACATGTTCTTAA 59.772 45.455 10.83 0.00 0.00 1.85
2106 3915 1.810151 GGAAAGGCGCACATGTTCTTA 59.190 47.619 10.83 0.00 0.00 2.10
2107 3916 0.598065 GGAAAGGCGCACATGTTCTT 59.402 50.000 10.83 0.00 0.00 2.52
2108 3917 0.250901 AGGAAAGGCGCACATGTTCT 60.251 50.000 10.83 0.00 0.00 3.01
2109 3918 0.598065 AAGGAAAGGCGCACATGTTC 59.402 50.000 10.83 4.48 0.00 3.18
2110 3919 0.314935 CAAGGAAAGGCGCACATGTT 59.685 50.000 10.83 0.00 0.00 2.71
2111 3920 1.526575 CCAAGGAAAGGCGCACATGT 61.527 55.000 10.83 0.00 0.00 3.21
2112 3921 1.213537 CCAAGGAAAGGCGCACATG 59.786 57.895 10.83 0.00 0.00 3.21
2113 3922 0.539438 TTCCAAGGAAAGGCGCACAT 60.539 50.000 10.83 0.00 0.00 3.21
2114 3923 0.539438 ATTCCAAGGAAAGGCGCACA 60.539 50.000 10.83 0.00 37.69 4.57
2115 3924 1.401905 CTATTCCAAGGAAAGGCGCAC 59.598 52.381 10.83 0.00 37.69 5.34
2116 3925 1.280710 TCTATTCCAAGGAAAGGCGCA 59.719 47.619 10.83 0.00 37.69 6.09
2117 3926 2.038387 TCTATTCCAAGGAAAGGCGC 57.962 50.000 5.52 0.00 37.69 6.53
2118 3927 2.880890 CCATCTATTCCAAGGAAAGGCG 59.119 50.000 5.52 0.00 37.69 5.52
2119 3928 4.170468 TCCATCTATTCCAAGGAAAGGC 57.830 45.455 5.52 0.00 37.69 4.35
2120 3929 5.537674 CCAATCCATCTATTCCAAGGAAAGG 59.462 44.000 5.52 3.95 37.69 3.11
2121 3930 6.040166 CACCAATCCATCTATTCCAAGGAAAG 59.960 42.308 5.52 5.38 37.69 2.62
2122 3931 5.893255 CACCAATCCATCTATTCCAAGGAAA 59.107 40.000 5.52 0.00 37.69 3.13
2123 3932 5.448654 CACCAATCCATCTATTCCAAGGAA 58.551 41.667 3.67 3.67 38.59 3.36
2124 3933 4.141181 CCACCAATCCATCTATTCCAAGGA 60.141 45.833 0.00 0.00 0.00 3.36
2125 3934 4.147321 CCACCAATCCATCTATTCCAAGG 58.853 47.826 0.00 0.00 0.00 3.61
2126 3935 3.571401 GCCACCAATCCATCTATTCCAAG 59.429 47.826 0.00 0.00 0.00 3.61
2127 3936 3.565307 GCCACCAATCCATCTATTCCAA 58.435 45.455 0.00 0.00 0.00 3.53
2128 3937 2.158475 GGCCACCAATCCATCTATTCCA 60.158 50.000 0.00 0.00 0.00 3.53
2129 3938 2.108952 AGGCCACCAATCCATCTATTCC 59.891 50.000 5.01 0.00 0.00 3.01
2130 3939 3.152341 CAGGCCACCAATCCATCTATTC 58.848 50.000 5.01 0.00 0.00 1.75
2131 3940 2.785269 TCAGGCCACCAATCCATCTATT 59.215 45.455 5.01 0.00 0.00 1.73
2132 3941 2.421725 TCAGGCCACCAATCCATCTAT 58.578 47.619 5.01 0.00 0.00 1.98
2133 3942 1.891933 TCAGGCCACCAATCCATCTA 58.108 50.000 5.01 0.00 0.00 1.98
2134 3943 1.229131 ATCAGGCCACCAATCCATCT 58.771 50.000 5.01 0.00 0.00 2.90
2135 3944 2.957402 TATCAGGCCACCAATCCATC 57.043 50.000 5.01 0.00 0.00 3.51
2136 3945 3.909427 ATTATCAGGCCACCAATCCAT 57.091 42.857 5.01 0.00 0.00 3.41
2137 3946 3.686227 AATTATCAGGCCACCAATCCA 57.314 42.857 5.01 0.00 0.00 3.41
2138 3947 3.070015 CCAAATTATCAGGCCACCAATCC 59.930 47.826 5.01 0.00 0.00 3.01
2139 3948 3.493176 GCCAAATTATCAGGCCACCAATC 60.493 47.826 5.01 0.00 42.58 2.67
2140 3949 2.435437 GCCAAATTATCAGGCCACCAAT 59.565 45.455 5.01 0.00 42.58 3.16
2141 3950 1.830477 GCCAAATTATCAGGCCACCAA 59.170 47.619 5.01 0.00 42.58 3.67
2142 3951 1.484038 GCCAAATTATCAGGCCACCA 58.516 50.000 5.01 0.00 42.58 4.17
2143 3952 0.385390 CGCCAAATTATCAGGCCACC 59.615 55.000 5.01 0.00 45.56 4.61
2144 3953 0.249031 GCGCCAAATTATCAGGCCAC 60.249 55.000 5.01 0.00 45.56 5.01
2145 3954 1.391157 GGCGCCAAATTATCAGGCCA 61.391 55.000 24.80 0.00 45.56 5.36
2146 3955 1.363807 GGCGCCAAATTATCAGGCC 59.636 57.895 24.80 0.00 45.56 5.19
2147 3956 1.109323 AGGGCGCCAAATTATCAGGC 61.109 55.000 30.85 5.70 44.89 4.85
2151 3960 5.453567 AATAAAGAGGGCGCCAAATTATC 57.546 39.130 30.85 15.08 0.00 1.75
2226 4307 1.925847 GTGGTTTTGCATGTGTGTGTG 59.074 47.619 0.00 0.00 0.00 3.82
2232 4313 1.798283 CCCATGTGGTTTTGCATGTG 58.202 50.000 0.00 0.00 40.42 3.21
2320 4401 1.796017 TGTGGTAGTGAGGTTGTCCA 58.204 50.000 0.00 0.00 35.89 4.02
2322 4403 2.870411 GTGTTGTGGTAGTGAGGTTGTC 59.130 50.000 0.00 0.00 0.00 3.18
2390 4473 4.624015 AGGTCATGCAACTGTTTTCAATG 58.376 39.130 0.00 0.00 0.00 2.82
2403 4486 3.071457 TCTTTCAGAACAGAGGTCATGCA 59.929 43.478 0.00 0.00 0.00 3.96
2482 4565 7.226918 AGCTCTTGTGAGTAAAAGGTAAAGAAC 59.773 37.037 0.00 0.00 42.13 3.01
2533 4618 0.322975 CTGACAGCTTGGCCTAGTGT 59.677 55.000 15.85 16.72 0.00 3.55
2540 4625 2.804933 GCTATCCTACTGACAGCTTGGC 60.805 54.545 1.25 0.00 0.00 4.52
2547 4632 3.223435 GCTACAGGCTATCCTACTGACA 58.777 50.000 0.00 0.00 41.93 3.58
2548 4633 3.926821 GCTACAGGCTATCCTACTGAC 57.073 52.381 0.00 0.00 41.93 3.51
2576 4661 2.347490 CTGTCCCGACCCCAACTG 59.653 66.667 0.00 0.00 0.00 3.16
2583 4668 4.097361 GGCCTTCCTGTCCCGACC 62.097 72.222 0.00 0.00 0.00 4.79
2603 4688 2.017049 CAATTCAAGGATCGACCCACC 58.983 52.381 0.00 0.00 40.05 4.61
2607 4692 6.750148 AGATAGTACAATTCAAGGATCGACC 58.250 40.000 0.00 0.00 39.35 4.79
2608 4693 8.569641 ACTAGATAGTACAATTCAAGGATCGAC 58.430 37.037 0.00 0.00 34.13 4.20
2638 4725 6.047231 ACGACCTACCAATCTTGTATAAAGC 58.953 40.000 0.00 0.00 0.00 3.51
2639 4726 9.408069 GATACGACCTACCAATCTTGTATAAAG 57.592 37.037 0.00 0.00 0.00 1.85
2640 4727 8.916062 TGATACGACCTACCAATCTTGTATAAA 58.084 33.333 0.00 0.00 0.00 1.40
2641 4728 8.355169 GTGATACGACCTACCAATCTTGTATAA 58.645 37.037 0.00 0.00 0.00 0.98
2642 4729 7.503230 TGTGATACGACCTACCAATCTTGTATA 59.497 37.037 0.00 0.00 0.00 1.47
2643 4730 6.322969 TGTGATACGACCTACCAATCTTGTAT 59.677 38.462 0.00 0.00 0.00 2.29
2644 4731 5.653330 TGTGATACGACCTACCAATCTTGTA 59.347 40.000 0.00 0.00 0.00 2.41
2645 4732 4.464951 TGTGATACGACCTACCAATCTTGT 59.535 41.667 0.00 0.00 0.00 3.16
2646 4733 4.804139 GTGTGATACGACCTACCAATCTTG 59.196 45.833 0.00 0.00 0.00 3.02
2647 4734 4.710375 AGTGTGATACGACCTACCAATCTT 59.290 41.667 0.00 0.00 0.00 2.40
2648 4735 4.279145 AGTGTGATACGACCTACCAATCT 58.721 43.478 0.00 0.00 0.00 2.40
2649 4736 4.650754 AGTGTGATACGACCTACCAATC 57.349 45.455 0.00 0.00 0.00 2.67
2650 4737 4.583489 CCTAGTGTGATACGACCTACCAAT 59.417 45.833 0.00 0.00 0.00 3.16
2651 4738 3.949754 CCTAGTGTGATACGACCTACCAA 59.050 47.826 0.00 0.00 0.00 3.67
2652 4739 3.200605 TCCTAGTGTGATACGACCTACCA 59.799 47.826 0.00 0.00 0.00 3.25
2653 4740 3.813443 TCCTAGTGTGATACGACCTACC 58.187 50.000 0.00 0.00 0.00 3.18
2654 4741 6.933521 TCTAATCCTAGTGTGATACGACCTAC 59.066 42.308 0.00 0.00 0.00 3.18
2655 4742 7.071069 TCTAATCCTAGTGTGATACGACCTA 57.929 40.000 0.00 0.00 0.00 3.08
2656 4743 5.938279 TCTAATCCTAGTGTGATACGACCT 58.062 41.667 0.00 0.00 0.00 3.85
2657 4744 5.764192 ACTCTAATCCTAGTGTGATACGACC 59.236 44.000 0.00 0.00 32.04 4.79
2658 4745 6.864360 ACTCTAATCCTAGTGTGATACGAC 57.136 41.667 0.00 0.00 32.04 4.34
2659 4746 9.217278 GATAACTCTAATCCTAGTGTGATACGA 57.783 37.037 0.00 0.00 33.25 3.43
2660 4747 8.452534 GGATAACTCTAATCCTAGTGTGATACG 58.547 40.741 0.00 0.00 39.93 3.06
2661 4748 8.741841 GGGATAACTCTAATCCTAGTGTGATAC 58.258 40.741 2.38 0.00 42.27 2.24
2662 4749 8.679725 AGGGATAACTCTAATCCTAGTGTGATA 58.320 37.037 2.38 0.00 42.27 2.15
2663 4750 7.453126 CAGGGATAACTCTAATCCTAGTGTGAT 59.547 40.741 2.38 0.00 42.27 3.06
2664 4751 6.778069 CAGGGATAACTCTAATCCTAGTGTGA 59.222 42.308 2.38 0.00 42.27 3.58
2665 4752 6.517529 GCAGGGATAACTCTAATCCTAGTGTG 60.518 46.154 2.38 0.00 42.27 3.82
2666 4753 5.540719 GCAGGGATAACTCTAATCCTAGTGT 59.459 44.000 2.38 0.00 42.27 3.55
2667 4754 5.777732 AGCAGGGATAACTCTAATCCTAGTG 59.222 44.000 2.38 0.37 42.27 2.74
2668 4755 5.971493 AGCAGGGATAACTCTAATCCTAGT 58.029 41.667 2.38 0.00 42.27 2.57
2669 4756 6.926630 AAGCAGGGATAACTCTAATCCTAG 57.073 41.667 2.38 0.00 42.27 3.02
2670 4757 6.844388 TCAAAGCAGGGATAACTCTAATCCTA 59.156 38.462 2.38 0.00 42.27 2.94
2671 4758 5.667626 TCAAAGCAGGGATAACTCTAATCCT 59.332 40.000 2.38 0.00 42.27 3.24
2672 4759 5.930135 TCAAAGCAGGGATAACTCTAATCC 58.070 41.667 0.00 0.00 41.96 3.01
2673 4760 6.587273 ACTCAAAGCAGGGATAACTCTAATC 58.413 40.000 0.00 0.00 0.00 1.75
2674 4761 6.567602 ACTCAAAGCAGGGATAACTCTAAT 57.432 37.500 0.00 0.00 0.00 1.73
2675 4762 6.374417 AACTCAAAGCAGGGATAACTCTAA 57.626 37.500 0.00 0.00 0.00 2.10
2676 4763 6.173339 CAAACTCAAAGCAGGGATAACTCTA 58.827 40.000 0.00 0.00 0.00 2.43
2677 4764 4.917906 AACTCAAAGCAGGGATAACTCT 57.082 40.909 0.00 0.00 0.00 3.24
2678 4765 4.156739 CCAAACTCAAAGCAGGGATAACTC 59.843 45.833 0.00 0.00 0.00 3.01
2679 4766 4.082125 CCAAACTCAAAGCAGGGATAACT 58.918 43.478 0.00 0.00 0.00 2.24
2680 4767 4.079253 TCCAAACTCAAAGCAGGGATAAC 58.921 43.478 0.00 0.00 0.00 1.89
2681 4768 4.380843 TCCAAACTCAAAGCAGGGATAA 57.619 40.909 0.00 0.00 0.00 1.75
2682 4769 4.380843 TTCCAAACTCAAAGCAGGGATA 57.619 40.909 0.00 0.00 0.00 2.59
2683 4770 2.978156 TCCAAACTCAAAGCAGGGAT 57.022 45.000 0.00 0.00 0.00 3.85
2684 4771 2.746279 TTCCAAACTCAAAGCAGGGA 57.254 45.000 0.00 0.00 0.00 4.20
2685 4772 2.232208 GGATTCCAAACTCAAAGCAGGG 59.768 50.000 0.00 0.00 0.00 4.45
2686 4773 2.232208 GGGATTCCAAACTCAAAGCAGG 59.768 50.000 4.80 0.00 0.00 4.85
2687 4774 2.232208 GGGGATTCCAAACTCAAAGCAG 59.768 50.000 4.80 0.00 35.00 4.24
2688 4775 2.247358 GGGGATTCCAAACTCAAAGCA 58.753 47.619 4.80 0.00 35.00 3.91
2689 4776 2.247358 TGGGGATTCCAAACTCAAAGC 58.753 47.619 4.80 0.00 43.84 3.51
2703 4790 1.650528 GCTCCTGCTATAGTGGGGAT 58.349 55.000 15.17 0.00 36.03 3.85
2767 4855 3.375699 GATGAGGGAGAGTTTAGGGACA 58.624 50.000 0.00 0.00 0.00 4.02
2777 4865 2.158340 TGGATCAGAGGATGAGGGAGAG 60.158 54.545 0.00 0.00 42.53 3.20
2778 4866 1.862242 TGGATCAGAGGATGAGGGAGA 59.138 52.381 0.00 0.00 42.53 3.71
2782 4870 2.113807 TGTGTGGATCAGAGGATGAGG 58.886 52.381 0.00 0.00 42.53 3.86
2967 5072 4.262164 CCACCTTGCTAGTTTCTTGCATTT 60.262 41.667 6.70 0.00 41.17 2.32
3075 5241 2.568979 AGGGTTGGGCTCCAGTATTAA 58.431 47.619 0.00 0.00 33.81 1.40
3118 5284 0.096976 GTGTGCGATTTGGATGTCGG 59.903 55.000 0.00 0.00 38.24 4.79
3133 5299 2.125912 CTCCTTCCTCCGCGTGTG 60.126 66.667 4.92 0.00 0.00 3.82
3138 5304 2.579738 GTGACCTCCTTCCTCCGC 59.420 66.667 0.00 0.00 0.00 5.54
3177 5696 4.165372 TGGTGAAAGATGGGAATAGTACCC 59.835 45.833 0.00 0.00 46.87 3.69
3221 5740 1.730064 CAACGCCGCTAGTACATTTGT 59.270 47.619 0.00 0.00 0.00 2.83
3374 5893 0.512952 GCAATATCATCGCCGACCAC 59.487 55.000 0.00 0.00 0.00 4.16
3385 5904 1.758592 GTAGGGCGGGGCAATATCA 59.241 57.895 0.00 0.00 0.00 2.15
3418 5946 2.171870 GGGATTTAGACGGGATGGTTCA 59.828 50.000 0.00 0.00 0.00 3.18
3419 5947 2.486727 GGGGATTTAGACGGGATGGTTC 60.487 54.545 0.00 0.00 0.00 3.62
3426 5954 1.789523 TGAGAGGGGATTTAGACGGG 58.210 55.000 0.00 0.00 0.00 5.28
3656 7462 1.535204 GCACCTGGGTGTTGGATTGG 61.535 60.000 19.28 0.00 46.90 3.16
3722 7566 7.822658 TGATTTTTCTAAGGAAACCCGTAATG 58.177 34.615 0.00 0.00 40.63 1.90
3727 7571 5.102313 GCATGATTTTTCTAAGGAAACCCG 58.898 41.667 0.00 0.00 40.63 5.28
3825 9207 6.677781 ATTACATCGTTAATTGTGTGGAGG 57.322 37.500 0.00 0.00 0.00 4.30
3858 9240 6.813649 TCGCCTTCATGTTTATCATCTATAGC 59.186 38.462 0.00 0.00 34.09 2.97
3859 9241 7.009999 GCTCGCCTTCATGTTTATCATCTATAG 59.990 40.741 0.00 0.00 34.09 1.31
3860 9242 6.813649 GCTCGCCTTCATGTTTATCATCTATA 59.186 38.462 0.00 0.00 34.09 1.31
3861 9243 5.641209 GCTCGCCTTCATGTTTATCATCTAT 59.359 40.000 0.00 0.00 34.09 1.98
3862 9244 4.991056 GCTCGCCTTCATGTTTATCATCTA 59.009 41.667 0.00 0.00 34.09 1.98
3929 9311 1.235724 GTTTCCAGGACTTGAACCCG 58.764 55.000 0.00 0.00 0.00 5.28
4045 9427 4.019321 TGTTTATCATCTATAGGGCAGCCC 60.019 45.833 24.90 24.90 45.90 5.19
4135 9538 4.939052 ATACCTAGCACGTAAGCATTCT 57.061 40.909 0.36 0.00 45.62 2.40
4138 9541 5.018539 TGAAATACCTAGCACGTAAGCAT 57.981 39.130 0.36 0.00 45.62 3.79
4139 9542 4.459390 TGAAATACCTAGCACGTAAGCA 57.541 40.909 0.36 0.00 45.62 3.91
4142 9545 5.865552 GTGAGTTGAAATACCTAGCACGTAA 59.134 40.000 0.00 0.00 0.00 3.18
4144 9547 4.243270 GTGAGTTGAAATACCTAGCACGT 58.757 43.478 0.00 0.00 0.00 4.49
4146 9549 5.874810 TGATGTGAGTTGAAATACCTAGCAC 59.125 40.000 0.00 0.00 0.00 4.40
4148 9551 6.455646 CGTTGATGTGAGTTGAAATACCTAGC 60.456 42.308 0.00 0.00 0.00 3.42
4153 9556 6.467723 AGACGTTGATGTGAGTTGAAATAC 57.532 37.500 0.00 0.00 0.00 1.89
4155 9558 4.150627 CGAGACGTTGATGTGAGTTGAAAT 59.849 41.667 0.00 0.00 0.00 2.17
4156 9559 3.489416 CGAGACGTTGATGTGAGTTGAAA 59.511 43.478 0.00 0.00 0.00 2.69
4157 9560 3.049912 CGAGACGTTGATGTGAGTTGAA 58.950 45.455 0.00 0.00 0.00 2.69
4158 9561 2.292292 TCGAGACGTTGATGTGAGTTGA 59.708 45.455 0.00 0.00 0.00 3.18
4159 9562 2.661594 TCGAGACGTTGATGTGAGTTG 58.338 47.619 0.00 0.00 0.00 3.16
4160 9563 3.577649 ATCGAGACGTTGATGTGAGTT 57.422 42.857 0.00 0.00 0.00 3.01
4179 9582 8.641498 AATTGTCAAGTGAAGGAACTGATAAT 57.359 30.769 0.00 0.00 40.86 1.28
4243 9658 8.621532 TGTTCTATTTAGTCAACAATGAGCTT 57.378 30.769 0.00 0.00 35.88 3.74
4333 9840 8.418597 TCACTTGAGACTACCTGTAAATAAGT 57.581 34.615 0.00 0.00 0.00 2.24
4458 9965 7.437862 TGATAATTTTTGCCTTTCTGACACAAC 59.562 33.333 0.00 0.00 0.00 3.32
4479 9986 1.768275 ACCATCTCCCACGCATGATAA 59.232 47.619 0.00 0.00 0.00 1.75
4704 10214 7.954620 TCCTTATAGTACTCCCTTCCTAATTCC 59.045 40.741 0.00 0.00 0.00 3.01
4890 10401 9.095065 TCTAGAGATAACCGAATAAACTTTTGC 57.905 33.333 0.00 0.00 0.00 3.68
4900 10411 5.871396 TGGCTTTCTAGAGATAACCGAAT 57.129 39.130 0.00 0.00 0.00 3.34
4963 10599 5.643379 AGTGTTCTCAATGTTTGTTGTGT 57.357 34.783 0.00 0.00 0.00 3.72
4971 10607 8.950210 CCAACTGATATTAGTGTTCTCAATGTT 58.050 33.333 0.16 0.00 0.00 2.71
5108 10744 2.324541 AGGACAGATACCTCAGATGCC 58.675 52.381 0.00 0.00 31.43 4.40
5122 10758 2.543777 TCCGTTTCTTCCAAGGACAG 57.456 50.000 0.00 0.00 0.00 3.51
5269 11250 7.921786 TGTCACTTATATTTGTTTCCCTGAG 57.078 36.000 0.00 0.00 0.00 3.35
5350 11331 1.951895 GCAGCAATCACCATCCTCACA 60.952 52.381 0.00 0.00 0.00 3.58
5433 11414 7.948278 AGCTAATAATAAGGAAGCAGTTACG 57.052 36.000 0.00 0.00 35.63 3.18
5450 11431 5.955959 TCACCTTCTCACCTACAAGCTAATA 59.044 40.000 0.00 0.00 0.00 0.98
5451 11432 4.777896 TCACCTTCTCACCTACAAGCTAAT 59.222 41.667 0.00 0.00 0.00 1.73
5452 11433 4.157246 TCACCTTCTCACCTACAAGCTAA 58.843 43.478 0.00 0.00 0.00 3.09
5453 11434 3.774734 TCACCTTCTCACCTACAAGCTA 58.225 45.455 0.00 0.00 0.00 3.32
5457 11438 5.825593 AAGATTCACCTTCTCACCTACAA 57.174 39.130 0.00 0.00 0.00 2.41
5458 11439 5.187186 GGTAAGATTCACCTTCTCACCTACA 59.813 44.000 0.00 0.00 32.98 2.74
5459 11440 5.187186 TGGTAAGATTCACCTTCTCACCTAC 59.813 44.000 0.00 0.00 36.96 3.18
5460 11441 5.338632 TGGTAAGATTCACCTTCTCACCTA 58.661 41.667 0.00 0.00 36.96 3.08
5461 11442 4.168101 TGGTAAGATTCACCTTCTCACCT 58.832 43.478 0.00 0.00 36.96 4.00
5491 11480 6.670617 TCCCAGTCTACTACTACAAGCTAAT 58.329 40.000 0.00 0.00 35.76 1.73
5623 11615 5.063204 CGTTGGCCAAAATATCCTCTGATA 58.937 41.667 22.47 0.00 37.84 2.15
5740 11851 1.028868 GGAGCTGACACAAGCCATCC 61.029 60.000 0.00 0.00 44.68 3.51
5763 11874 5.174035 CGATCGATCTGAATGTACTCCAAAC 59.826 44.000 22.43 0.00 0.00 2.93
5772 11883 2.544694 GGAGCACGATCGATCTGAATGT 60.545 50.000 24.34 10.13 0.00 2.71
5821 11932 2.092968 GTGGTGATGGTAGGATTGCAGA 60.093 50.000 0.00 0.00 0.00 4.26
5889 12000 4.520492 CCACCATTCCTATTAGTTGCATCC 59.480 45.833 0.00 0.00 0.00 3.51
5894 12005 5.536161 CCCATTCCACCATTCCTATTAGTTG 59.464 44.000 0.00 0.00 0.00 3.16
5897 12008 5.515534 CCTCCCATTCCACCATTCCTATTAG 60.516 48.000 0.00 0.00 0.00 1.73
5942 12053 1.268899 CAAGACAGGAAAGGCTTGCAG 59.731 52.381 7.69 1.29 32.41 4.41
6020 12131 2.897271 TCATTCAAAGCCCTTGCCTA 57.103 45.000 0.00 0.00 38.69 3.93
6045 12156 0.249322 ACCGCGGACACAGTATATGC 60.249 55.000 35.90 0.00 0.00 3.14
6060 12171 3.120321 TCTCTAGAGAGATGAGACCGC 57.880 52.381 18.76 0.00 45.48 5.68
6110 12221 4.410228 CCTCTCCAGGTCAAGGATTTCATA 59.590 45.833 0.00 0.00 34.60 2.15
6187 12298 1.543871 GGAACACCTTCCAACGCCTTA 60.544 52.381 0.00 0.00 45.11 2.69
6281 12419 2.092484 TGCAGTATAGCTCCAAATGCCA 60.092 45.455 11.29 0.38 34.99 4.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.