Multiple sequence alignment - TraesCS6B01G069900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G069900 chr6B 100.000 7988 0 0 1 7988 46929684 46921697 0.000000e+00 14752.0
1 TraesCS6B01G069900 chr6B 84.496 3296 397 69 4449 7680 47139445 47136200 0.000000e+00 3151.0
2 TraesCS6B01G069900 chr6B 87.802 2361 266 13 3025 5368 47280546 47278191 0.000000e+00 2745.0
3 TraesCS6B01G069900 chr6B 87.810 1772 196 12 302 2064 46951249 46949489 0.000000e+00 2058.0
4 TraesCS6B01G069900 chr6B 84.833 1945 243 26 184 2113 47144771 47142864 0.000000e+00 1910.0
5 TraesCS6B01G069900 chr6B 83.469 1972 267 29 160 2113 46965887 46963957 0.000000e+00 1781.0
6 TraesCS6B01G069900 chr6B 82.436 1486 214 23 5514 6978 47090337 47088878 0.000000e+00 1254.0
7 TraesCS6B01G069900 chr6B 85.844 1208 136 13 984 2191 46844898 46846070 0.000000e+00 1251.0
8 TraesCS6B01G069900 chr6B 82.622 1266 178 28 5719 6977 47258025 47256795 0.000000e+00 1081.0
9 TraesCS6B01G069900 chr6B 81.898 1138 191 15 5719 6849 47232232 47231103 0.000000e+00 946.0
10 TraesCS6B01G069900 chr6B 79.321 1354 243 28 5514 6846 46848797 46850134 0.000000e+00 915.0
11 TraesCS6B01G069900 chr6B 80.793 1135 193 18 5722 6846 46788764 46789883 0.000000e+00 865.0
12 TraesCS6B01G069900 chrUn 88.413 3737 368 35 2999 6683 96298699 96294976 0.000000e+00 4442.0
13 TraesCS6B01G069900 chrUn 88.589 2445 248 15 2994 5413 96156600 96154162 0.000000e+00 2940.0
14 TraesCS6B01G069900 chrUn 87.055 2557 293 17 2958 5480 96218110 96215558 0.000000e+00 2854.0
15 TraesCS6B01G069900 chrUn 86.577 2518 317 15 2913 5413 96230518 96228005 0.000000e+00 2758.0
16 TraesCS6B01G069900 chrUn 81.738 2716 430 41 2924 5598 95817828 95820518 0.000000e+00 2207.0
17 TraesCS6B01G069900 chrUn 89.077 1300 130 8 862 2161 96160338 96159051 0.000000e+00 1604.0
18 TraesCS6B01G069900 chrUn 81.782 1998 257 56 740 2710 96232454 96230537 0.000000e+00 1574.0
19 TraesCS6B01G069900 chrUn 91.833 1102 87 3 963 2064 96300477 96299379 0.000000e+00 1533.0
20 TraesCS6B01G069900 chrUn 83.948 1601 213 28 732 2322 96129278 96127712 0.000000e+00 1493.0
21 TraesCS6B01G069900 chrUn 84.532 1377 198 11 740 2113 95763343 95764707 0.000000e+00 1349.0
22 TraesCS6B01G069900 chrUn 82.851 1487 209 23 5514 6978 96215485 96214023 0.000000e+00 1291.0
23 TraesCS6B01G069900 chrUn 92.677 874 52 8 1 871 96176888 96176024 0.000000e+00 1249.0
24 TraesCS6B01G069900 chrUn 80.448 1294 219 25 5733 7008 95712139 95713416 0.000000e+00 957.0
25 TraesCS6B01G069900 chrUn 81.330 932 111 36 335 1227 96181981 96181074 0.000000e+00 699.0
26 TraesCS6B01G069900 chrUn 86.628 344 36 8 7025 7365 96122425 96122089 9.790000e-99 372.0
27 TraesCS6B01G069900 chrUn 88.123 261 17 7 7334 7585 96121974 96121719 1.690000e-76 298.0
28 TraesCS6B01G069900 chrUn 88.372 86 8 2 6941 7024 96122472 96122387 1.420000e-17 102.0
29 TraesCS6B01G069900 chrUn 83.838 99 11 2 7494 7592 95713573 95713666 1.100000e-13 89.8
30 TraesCS6B01G069900 chrUn 87.692 65 3 4 7194 7255 95989636 95989698 4.000000e-08 71.3
31 TraesCS6B01G069900 chr6A 96.249 2346 73 7 531 2864 27072607 27070265 0.000000e+00 3831.0
32 TraesCS6B01G069900 chr6A 88.902 2514 226 18 4505 6981 27059797 27057300 0.000000e+00 3048.0
33 TraesCS6B01G069900 chr6A 88.601 2474 258 20 2956 5413 27008908 27006443 0.000000e+00 2985.0
34 TraesCS6B01G069900 chr6A 87.429 2450 274 28 2956 5391 27106722 27104293 0.000000e+00 2787.0
35 TraesCS6B01G069900 chr6A 96.953 1641 48 1 2877 4517 27062699 27061061 0.000000e+00 2752.0
36 TraesCS6B01G069900 chr6A 79.643 3694 624 86 3199 6849 27086781 27083173 0.000000e+00 2538.0
37 TraesCS6B01G069900 chr6A 84.916 1843 239 18 335 2165 27013441 27011626 0.000000e+00 1827.0
38 TraesCS6B01G069900 chr6A 81.435 1282 221 14 5658 6934 27006091 27004822 0.000000e+00 1033.0
39 TraesCS6B01G069900 chr6A 90.468 556 28 7 7 562 27073137 27072607 0.000000e+00 710.0
40 TraesCS6B01G069900 chr6A 83.641 434 58 8 566 995 27015187 27014763 5.810000e-106 396.0
41 TraesCS6B01G069900 chr6A 81.646 158 28 1 2644 2800 27107130 27106973 6.510000e-26 130.0
42 TraesCS6B01G069900 chr6A 94.231 52 3 0 7548 7599 27055891 27055840 6.650000e-11 80.5
43 TraesCS6B01G069900 chr4A 84.500 200 22 6 7630 7827 707061065 707060873 1.060000e-43 189.0
44 TraesCS6B01G069900 chr1B 81.910 199 29 4 7630 7827 360952492 360952684 2.310000e-35 161.0
45 TraesCS6B01G069900 chr1D 100.000 30 0 0 2819 2848 379134519 379134548 1.000000e-03 56.5
46 TraesCS6B01G069900 chr2A 100.000 28 0 0 2820 2847 767031060 767031087 1.400000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G069900 chr6B 46921697 46929684 7987 True 14752.000000 14752 100.000000 1 7988 1 chr6B.!!$R1 7987
1 TraesCS6B01G069900 chr6B 47278191 47280546 2355 True 2745.000000 2745 87.802000 3025 5368 1 chr6B.!!$R7 2343
2 TraesCS6B01G069900 chr6B 47136200 47144771 8571 True 2530.500000 3151 84.664500 184 7680 2 chr6B.!!$R8 7496
3 TraesCS6B01G069900 chr6B 46949489 46951249 1760 True 2058.000000 2058 87.810000 302 2064 1 chr6B.!!$R2 1762
4 TraesCS6B01G069900 chr6B 46963957 46965887 1930 True 1781.000000 1781 83.469000 160 2113 1 chr6B.!!$R3 1953
5 TraesCS6B01G069900 chr6B 47088878 47090337 1459 True 1254.000000 1254 82.436000 5514 6978 1 chr6B.!!$R4 1464
6 TraesCS6B01G069900 chr6B 46844898 46850134 5236 False 1083.000000 1251 82.582500 984 6846 2 chr6B.!!$F2 5862
7 TraesCS6B01G069900 chr6B 47256795 47258025 1230 True 1081.000000 1081 82.622000 5719 6977 1 chr6B.!!$R6 1258
8 TraesCS6B01G069900 chr6B 47231103 47232232 1129 True 946.000000 946 81.898000 5719 6849 1 chr6B.!!$R5 1130
9 TraesCS6B01G069900 chr6B 46788764 46789883 1119 False 865.000000 865 80.793000 5722 6846 1 chr6B.!!$F1 1124
10 TraesCS6B01G069900 chrUn 96294976 96300477 5501 True 2987.500000 4442 90.123000 963 6683 2 chrUn.!!$R8 5720
11 TraesCS6B01G069900 chrUn 96154162 96160338 6176 True 2272.000000 2940 88.833000 862 5413 2 chrUn.!!$R5 4551
12 TraesCS6B01G069900 chrUn 95817828 95820518 2690 False 2207.000000 2207 81.738000 2924 5598 1 chrUn.!!$F2 2674
13 TraesCS6B01G069900 chrUn 96228005 96232454 4449 True 2166.000000 2758 84.179500 740 5413 2 chrUn.!!$R7 4673
14 TraesCS6B01G069900 chrUn 96214023 96218110 4087 True 2072.500000 2854 84.953000 2958 6978 2 chrUn.!!$R6 4020
15 TraesCS6B01G069900 chrUn 96127712 96129278 1566 True 1493.000000 1493 83.948000 732 2322 1 chrUn.!!$R1 1590
16 TraesCS6B01G069900 chrUn 95763343 95764707 1364 False 1349.000000 1349 84.532000 740 2113 1 chrUn.!!$F1 1373
17 TraesCS6B01G069900 chrUn 96176024 96176888 864 True 1249.000000 1249 92.677000 1 871 1 chrUn.!!$R2 870
18 TraesCS6B01G069900 chrUn 96181074 96181981 907 True 699.000000 699 81.330000 335 1227 1 chrUn.!!$R3 892
19 TraesCS6B01G069900 chrUn 95712139 95713666 1527 False 523.400000 957 82.143000 5733 7592 2 chrUn.!!$F4 1859
20 TraesCS6B01G069900 chrUn 96121719 96122472 753 True 257.333333 372 87.707667 6941 7585 3 chrUn.!!$R4 644
21 TraesCS6B01G069900 chr6A 27083173 27086781 3608 True 2538.000000 2538 79.643000 3199 6849 1 chr6A.!!$R1 3650
22 TraesCS6B01G069900 chr6A 27070265 27073137 2872 True 2270.500000 3831 93.358500 7 2864 2 chr6A.!!$R4 2857
23 TraesCS6B01G069900 chr6A 27055840 27062699 6859 True 1960.166667 3048 93.362000 2877 7599 3 chr6A.!!$R3 4722
24 TraesCS6B01G069900 chr6A 27004822 27015187 10365 True 1560.250000 2985 84.648250 335 6934 4 chr6A.!!$R2 6599
25 TraesCS6B01G069900 chr6A 27104293 27107130 2837 True 1458.500000 2787 84.537500 2644 5391 2 chr6A.!!$R5 2747

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
467 1899 0.632294 GGTCTAGGGTGAGAGAGGGT 59.368 60.000 0.00 0.00 0.00 4.34 F
1224 2754 0.392863 AGCGTGCCATGTATGAAGCA 60.393 50.000 0.00 0.00 0.00 3.91 F
2230 4243 1.361668 CCTGCCGCATGTGTACTGTC 61.362 60.000 5.38 0.00 0.00 3.51 F
2692 7133 0.324943 ATGACACTAAAGCGTGCCCT 59.675 50.000 0.00 0.00 38.45 5.19 F
2870 7354 2.870411 ACTTTGAACTAAGGTGCGACAC 59.130 45.455 1.92 1.92 0.00 3.67 F
4688 12113 0.537143 AGCCATCAAGCGTGTTGGAA 60.537 50.000 27.45 0.00 44.44 3.53 F
5960 13539 0.178958 AGCTACCGGAGTCCATAGGG 60.179 60.000 9.46 4.54 0.00 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2290 4308 1.290009 GTTGTTGTGGGAGCATGGC 59.710 57.895 0.00 0.0 0.00 4.40 R
2692 7133 2.243478 TGGCTAAACCTATTCATGGGCA 59.757 45.455 0.00 0.0 40.22 5.36 R
3928 10076 4.346734 AGCTACAACATTTGCAGAATCG 57.653 40.909 0.00 0.0 0.00 3.34 R
4119 10267 5.220605 GCAATGAAGTTAAGGTACCTTAGCG 60.221 44.000 31.13 21.3 42.15 4.26 R
4731 12156 0.040058 AAATGCAGCCACCATCTGGA 59.960 50.000 2.55 0.0 43.95 3.86 R
6157 13736 0.036010 CTTCTCACGGTCCCAGCATT 60.036 55.000 0.00 0.0 0.00 3.56 R
7688 16351 0.176680 ACTGGAGTCCATCATGTCGC 59.823 55.000 13.56 0.0 30.82 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
226 228 1.847890 TTGTTGTCGGCTTTAGCGCC 61.848 55.000 2.29 0.00 46.68 6.53
254 256 2.583024 TGATGATGCACCCAACTGAA 57.417 45.000 0.00 0.00 0.00 3.02
286 291 7.069455 ACAAAGGTAAAAGTTGTAAAGCCATCT 59.931 33.333 0.00 0.00 33.80 2.90
288 293 8.700439 AAGGTAAAAGTTGTAAAGCCATCTTA 57.300 30.769 0.00 0.00 31.02 2.10
316 323 6.406288 CCTCTCAATGAACTCTGCATACTACA 60.406 42.308 0.00 0.00 0.00 2.74
406 1838 4.726583 ACAAGCCATATTCTGCATCATCT 58.273 39.130 0.00 0.00 0.00 2.90
407 1839 4.519350 ACAAGCCATATTCTGCATCATCTG 59.481 41.667 0.00 0.00 0.00 2.90
408 1840 4.368565 AGCCATATTCTGCATCATCTGT 57.631 40.909 0.00 0.00 0.00 3.41
409 1841 4.325119 AGCCATATTCTGCATCATCTGTC 58.675 43.478 0.00 0.00 0.00 3.51
410 1842 3.124806 GCCATATTCTGCATCATCTGTCG 59.875 47.826 0.00 0.00 0.00 4.35
411 1843 3.683340 CCATATTCTGCATCATCTGTCGG 59.317 47.826 0.00 0.00 0.00 4.79
412 1844 2.251409 ATTCTGCATCATCTGTCGGG 57.749 50.000 0.00 0.00 0.00 5.14
413 1845 1.194218 TTCTGCATCATCTGTCGGGA 58.806 50.000 0.00 0.00 0.00 5.14
414 1846 1.194218 TCTGCATCATCTGTCGGGAA 58.806 50.000 0.00 0.00 0.00 3.97
415 1847 1.554617 TCTGCATCATCTGTCGGGAAA 59.445 47.619 0.00 0.00 0.00 3.13
416 1848 2.171237 TCTGCATCATCTGTCGGGAAAT 59.829 45.455 0.00 0.00 0.00 2.17
417 1849 2.947652 CTGCATCATCTGTCGGGAAATT 59.052 45.455 0.00 0.00 0.00 1.82
418 1850 2.684374 TGCATCATCTGTCGGGAAATTG 59.316 45.455 0.00 0.00 0.00 2.32
419 1851 2.684881 GCATCATCTGTCGGGAAATTGT 59.315 45.455 0.00 0.00 0.00 2.71
420 1852 3.242870 GCATCATCTGTCGGGAAATTGTC 60.243 47.826 0.00 0.00 0.00 3.18
421 1853 3.694043 TCATCTGTCGGGAAATTGTCA 57.306 42.857 0.00 0.00 0.00 3.58
422 1854 4.220693 TCATCTGTCGGGAAATTGTCAT 57.779 40.909 0.00 0.00 0.00 3.06
467 1899 0.632294 GGTCTAGGGTGAGAGAGGGT 59.368 60.000 0.00 0.00 0.00 4.34
472 1904 4.500116 GGTGAGAGAGGGTCGCGC 62.500 72.222 0.00 0.00 34.92 6.86
493 1925 0.901827 TGCTCAAGCGGACTTCCATA 59.098 50.000 0.00 0.00 45.83 2.74
595 2067 3.211045 GGCTTCTCGATCTACTCTGAGT 58.789 50.000 15.57 15.57 0.00 3.41
633 2105 4.654262 CCAGGTAAATCTCTTACCAGGCTA 59.346 45.833 14.45 0.00 45.23 3.93
668 2149 4.082026 CCTACATTTTTGCCTTTGGAGAGG 60.082 45.833 0.00 0.00 39.93 3.69
899 2421 6.538945 TGTACTCATGTTAGCATTCTGGTA 57.461 37.500 0.00 0.00 31.99 3.25
901 2423 4.433615 ACTCATGTTAGCATTCTGGTACG 58.566 43.478 0.00 0.00 31.99 3.67
1095 2625 1.985473 TGCTGCTTGGAGTCACAAAT 58.015 45.000 0.00 0.00 0.00 2.32
1224 2754 0.392863 AGCGTGCCATGTATGAAGCA 60.393 50.000 0.00 0.00 0.00 3.91
2034 3568 1.952296 GAGGATGGCTGGTTATTGCTG 59.048 52.381 0.00 0.00 0.00 4.41
2100 3635 6.327386 ACTAGCTCCATTCTTAATTTGGGA 57.673 37.500 0.00 0.00 0.00 4.37
2230 4243 1.361668 CCTGCCGCATGTGTACTGTC 61.362 60.000 5.38 0.00 0.00 3.51
2290 4308 9.492973 AAATTTAGGTTGATGAAAATTGGACAG 57.507 29.630 0.00 0.00 33.16 3.51
2396 4492 5.581126 TTGCAACTGTGACTCAAAGAATT 57.419 34.783 2.99 0.00 0.00 2.17
2635 7075 5.239306 TGGCATACGTGGTACAGTACTATAC 59.761 44.000 10.62 2.51 41.80 1.47
2692 7133 0.324943 ATGACACTAAAGCGTGCCCT 59.675 50.000 0.00 0.00 38.45 5.19
2775 7259 4.870991 GCTGGTACTTGACATTCTTCTACC 59.129 45.833 0.00 0.00 0.00 3.18
2842 7326 5.153950 ACTCCCTCCGATTCATAATAAGC 57.846 43.478 0.00 0.00 0.00 3.09
2868 7352 3.873529 CAACTTTGAACTAAGGTGCGAC 58.126 45.455 1.81 0.00 36.17 5.19
2870 7354 2.870411 ACTTTGAACTAAGGTGCGACAC 59.130 45.455 1.92 1.92 0.00 3.67
2871 7355 2.902705 TTGAACTAAGGTGCGACACT 57.097 45.000 9.31 0.00 34.40 3.55
2917 8912 7.816995 AGAATGAATCTGTGTAGTTTCTGAGAC 59.183 37.037 0.00 0.00 36.88 3.36
3205 9346 5.473931 TGACTCTATCAGTTCAACTGCTTC 58.526 41.667 13.15 0.00 45.54 3.86
3865 10010 3.517901 TGAGGGTACTAATGTCAGTTGGG 59.482 47.826 0.00 0.00 0.00 4.12
3928 10076 8.867112 TTCCATGTCTACGAACTTTACATATC 57.133 34.615 0.00 0.00 0.00 1.63
4119 10267 4.202020 GCATAGCTTTGTAAAGTTAGGGCC 60.202 45.833 12.47 0.00 35.62 5.80
4297 10445 6.429151 TCATCTTGAATTGGACAGATTGGAT 58.571 36.000 0.00 0.00 0.00 3.41
4444 10592 4.092091 GTCTCCGATAAAGAGCAACAACAG 59.908 45.833 0.00 0.00 0.00 3.16
4688 12113 0.537143 AGCCATCAAGCGTGTTGGAA 60.537 50.000 27.45 0.00 44.44 3.53
4709 12134 7.629157 TGGAACTGAATTCATACAATCCTACA 58.371 34.615 8.96 0.00 39.30 2.74
4731 12156 1.768888 ACCACAGTCCCCGTCCTTT 60.769 57.895 0.00 0.00 0.00 3.11
4755 12180 0.611618 ATGGTGGCTGCATTTCCGAA 60.612 50.000 0.50 0.00 0.00 4.30
4884 12309 4.713792 AATTGAAGTGTCTTCCTCCTGT 57.286 40.909 6.98 0.00 0.00 4.00
4984 12409 3.254093 TCTCTGGTTGACCTGGAACTA 57.746 47.619 0.00 0.00 35.87 2.24
5198 12623 1.078759 CCTAGCACTGCTCGTTTCCG 61.079 60.000 6.86 0.00 40.44 4.30
5306 12731 5.872617 TCAAGGAAATGGTATGTCTTGTACG 59.127 40.000 0.00 0.00 34.82 3.67
5511 13004 6.912591 GGACAACAATAACATGCTAGTAATGC 59.087 38.462 7.29 0.00 0.00 3.56
5600 13121 1.438651 TTTCTGATTTGGCGAGTCCG 58.561 50.000 0.00 0.00 37.80 4.79
5729 13307 4.819105 AGTCCGTCATCCACTTTTATCA 57.181 40.909 0.00 0.00 0.00 2.15
5759 13337 2.026262 TCATGCAGGAACCTTAACCTCC 60.026 50.000 0.00 0.00 33.91 4.30
5782 13360 4.383850 TTGAGGACACACAACAATTTGG 57.616 40.909 0.78 0.00 37.00 3.28
5944 13523 3.262915 AGAAGGTTGCAATCTAGTGAGCT 59.737 43.478 13.78 0.00 0.00 4.09
5952 13531 2.952978 CAATCTAGTGAGCTACCGGAGT 59.047 50.000 9.46 0.00 0.00 3.85
5960 13539 0.178958 AGCTACCGGAGTCCATAGGG 60.179 60.000 9.46 4.54 0.00 3.53
5966 13545 0.828343 CGGAGTCCATAGGGTCCTCC 60.828 65.000 18.85 18.85 43.76 4.30
6002 13581 4.704965 AGTCAACTCTCTTGTTGGTAACC 58.295 43.478 7.40 0.00 45.15 2.85
6182 13761 1.974957 TGGGACCGTGAGAAGAATGAA 59.025 47.619 0.00 0.00 0.00 2.57
6184 13763 2.742589 GGGACCGTGAGAAGAATGAAAC 59.257 50.000 0.00 0.00 0.00 2.78
6214 13793 2.350522 ACAACTCGTCATTGATCCAGC 58.649 47.619 0.00 0.00 0.00 4.85
6290 13869 9.221933 TCAAGCATTTTGCATGAATCTTATTTT 57.778 25.926 5.06 0.00 46.32 1.82
6315 13894 0.036858 GGAGTGTGAGAAGGGTGCTC 60.037 60.000 0.00 0.00 0.00 4.26
6395 13974 0.180171 TTGGTGATGCAGGATACCCG 59.820 55.000 8.43 0.00 37.58 5.28
6441 14020 3.197927 ACCAGGAAGAAGACCTCTCAT 57.802 47.619 0.00 0.00 35.35 2.90
6449 14028 6.445139 AGGAAGAAGACCTCTCATATTCCAAA 59.555 38.462 0.00 0.00 30.98 3.28
6464 14043 8.049117 TCATATTCCAAAGCAGAGTTCAATAGT 58.951 33.333 0.00 0.00 0.00 2.12
6526 14108 3.070018 CAAGGTTCAGAGACACATGGAC 58.930 50.000 0.00 0.00 0.00 4.02
6562 14144 1.374125 CGTCGTGCCCTGTCAATCA 60.374 57.895 0.00 0.00 0.00 2.57
6654 14248 0.613260 AGCCATGCCGAGTGTTAAGA 59.387 50.000 0.00 0.00 0.00 2.10
6703 14300 1.334869 GTTAGCAAATGAGGATGCCGG 59.665 52.381 0.00 0.00 43.57 6.13
6707 14304 0.749091 CAAATGAGGATGCCGGCAGA 60.749 55.000 35.36 13.03 0.00 4.26
6736 14333 2.767536 TGCTGGCGCAATACTTCTC 58.232 52.632 10.83 0.00 44.62 2.87
6813 14410 6.705381 TCTTAATTTGTTCATTTGGTTGCCAG 59.295 34.615 0.00 0.00 33.81 4.85
6869 14467 8.133024 TGCTGTTTCCATCCTTTATATGTTTT 57.867 30.769 0.00 0.00 0.00 2.43
6870 14468 8.592809 TGCTGTTTCCATCCTTTATATGTTTTT 58.407 29.630 0.00 0.00 0.00 1.94
6909 14519 3.017442 TGTAGAGGAGGACGATGAAGTG 58.983 50.000 0.00 0.00 0.00 3.16
6960 14572 2.221981 GGAACAAGAAGCAGAGACAACG 59.778 50.000 0.00 0.00 0.00 4.10
7023 14665 8.258708 CCTACTTGATTTTAGGTACTACTGCTT 58.741 37.037 0.00 0.00 42.67 3.91
7024 14666 7.907214 ACTTGATTTTAGGTACTACTGCTTG 57.093 36.000 0.00 0.00 42.67 4.01
7053 14695 1.134699 TCCTGCTTCATTCTAGGCACG 60.135 52.381 0.00 0.00 0.00 5.34
7054 14696 0.654683 CTGCTTCATTCTAGGCACGC 59.345 55.000 0.00 0.00 0.00 5.34
7077 14719 4.508662 GCTGTGCTTAGAGTCTTGGTATT 58.491 43.478 0.00 0.00 0.00 1.89
7078 14720 4.568760 GCTGTGCTTAGAGTCTTGGTATTC 59.431 45.833 0.00 0.00 0.00 1.75
7079 14721 5.086104 TGTGCTTAGAGTCTTGGTATTCC 57.914 43.478 0.00 0.00 0.00 3.01
7080 14722 4.081087 TGTGCTTAGAGTCTTGGTATTCCC 60.081 45.833 0.00 0.00 0.00 3.97
7088 14730 2.436173 GTCTTGGTATTCCCTCCCTCAG 59.564 54.545 0.00 0.00 0.00 3.35
7110 14777 6.595326 TCAGTTCCAGCAATATCAAACTACTG 59.405 38.462 0.00 0.00 0.00 2.74
7473 15322 7.402640 GCAAAGACAAGTATTATGTAGTCTGC 58.597 38.462 0.00 0.00 36.55 4.26
7505 15354 4.272504 TGTGTGCAGTAAGCTTTAACTGAC 59.727 41.667 26.46 20.88 44.79 3.51
7506 15355 3.493129 TGTGCAGTAAGCTTTAACTGACG 59.507 43.478 26.46 7.07 44.79 4.35
7507 15356 3.064207 TGCAGTAAGCTTTAACTGACGG 58.936 45.455 26.46 11.05 44.79 4.79
7508 15357 3.243941 TGCAGTAAGCTTTAACTGACGGA 60.244 43.478 26.46 9.17 44.79 4.69
7509 15358 3.123116 GCAGTAAGCTTTAACTGACGGAC 59.877 47.826 26.46 9.81 44.79 4.79
7539 15402 3.069443 GCTAGCTGCTTGGAGACTATCTT 59.931 47.826 7.79 0.00 38.95 2.40
7540 15403 3.817709 AGCTGCTTGGAGACTATCTTC 57.182 47.619 0.00 0.00 0.00 2.87
7542 15405 3.517100 AGCTGCTTGGAGACTATCTTCAA 59.483 43.478 0.00 0.00 39.57 2.69
7546 15409 6.677431 GCTGCTTGGAGACTATCTTCAATTTG 60.677 42.308 0.00 0.00 40.92 2.32
7593 16256 5.864418 AGAATTTGCAGACATAATGGCAT 57.136 34.783 0.00 0.00 35.98 4.40
7595 16258 2.875087 TTGCAGACATAATGGCATGC 57.125 45.000 9.90 9.90 35.98 4.06
7599 16262 2.100252 GCAGACATAATGGCATGCAGTT 59.900 45.455 21.36 15.35 32.34 3.16
7600 16263 3.794475 GCAGACATAATGGCATGCAGTTC 60.794 47.826 21.36 1.89 32.34 3.01
7604 16267 3.129813 ACATAATGGCATGCAGTTCTGTG 59.870 43.478 21.36 14.00 0.00 3.66
7606 16269 2.495155 ATGGCATGCAGTTCTGTGTA 57.505 45.000 21.36 0.00 0.00 2.90
7608 16271 2.794103 TGGCATGCAGTTCTGTGTATT 58.206 42.857 21.36 0.00 0.00 1.89
7613 16276 5.066375 GGCATGCAGTTCTGTGTATTTATGA 59.934 40.000 21.36 0.00 0.00 2.15
7614 16277 6.404623 GGCATGCAGTTCTGTGTATTTATGAA 60.405 38.462 21.36 0.00 0.00 2.57
7616 16279 7.703621 GCATGCAGTTCTGTGTATTTATGAAAT 59.296 33.333 14.21 0.00 34.90 2.17
7636 16299 6.545666 TGAAATACATATGTTTGGGCCAGTAG 59.454 38.462 14.77 0.00 0.00 2.57
7638 16301 4.316025 ACATATGTTTGGGCCAGTAGTT 57.684 40.909 6.23 0.00 0.00 2.24
7641 16304 6.249951 ACATATGTTTGGGCCAGTAGTTTTA 58.750 36.000 6.23 0.00 0.00 1.52
7642 16305 6.152154 ACATATGTTTGGGCCAGTAGTTTTAC 59.848 38.462 6.23 0.00 0.00 2.01
7643 16306 3.899726 TGTTTGGGCCAGTAGTTTTACA 58.100 40.909 6.23 0.00 31.96 2.41
7644 16307 4.279145 TGTTTGGGCCAGTAGTTTTACAA 58.721 39.130 6.23 0.00 31.96 2.41
7648 16311 5.461032 TGGGCCAGTAGTTTTACAAAATG 57.539 39.130 0.00 0.00 31.96 2.32
7649 16312 4.282195 TGGGCCAGTAGTTTTACAAAATGG 59.718 41.667 0.00 1.95 30.97 3.16
7654 16317 6.687604 CCAGTAGTTTTACAAAATGGAAGGG 58.312 40.000 0.44 0.00 29.83 3.95
7680 16343 0.036010 ACGAAGTCCCTGATGCCAAG 60.036 55.000 0.00 0.00 29.74 3.61
7681 16344 0.250234 CGAAGTCCCTGATGCCAAGA 59.750 55.000 0.00 0.00 0.00 3.02
7682 16345 1.743996 GAAGTCCCTGATGCCAAGAC 58.256 55.000 0.00 0.00 0.00 3.01
7683 16346 1.003580 GAAGTCCCTGATGCCAAGACA 59.996 52.381 0.00 0.00 31.53 3.41
7684 16347 1.293062 AGTCCCTGATGCCAAGACAT 58.707 50.000 0.00 0.00 31.53 3.06
7685 16348 2.481441 AGTCCCTGATGCCAAGACATA 58.519 47.619 0.00 0.00 31.53 2.29
7686 16349 2.846206 AGTCCCTGATGCCAAGACATAA 59.154 45.455 0.00 0.00 31.53 1.90
7687 16350 2.945668 GTCCCTGATGCCAAGACATAAC 59.054 50.000 0.00 0.00 0.00 1.89
7688 16351 1.942657 CCCTGATGCCAAGACATAACG 59.057 52.381 0.00 0.00 0.00 3.18
7689 16352 1.331756 CCTGATGCCAAGACATAACGC 59.668 52.381 0.00 0.00 0.00 4.84
7690 16353 1.004610 CTGATGCCAAGACATAACGCG 60.005 52.381 3.53 3.53 0.00 6.01
7691 16354 1.286501 GATGCCAAGACATAACGCGA 58.713 50.000 15.93 0.00 0.00 5.87
7692 16355 1.004927 GATGCCAAGACATAACGCGAC 60.005 52.381 15.93 0.00 0.00 5.19
7693 16356 0.319986 TGCCAAGACATAACGCGACA 60.320 50.000 15.93 0.00 0.00 4.35
7694 16357 1.006832 GCCAAGACATAACGCGACAT 58.993 50.000 15.93 1.42 0.00 3.06
7695 16358 1.267532 GCCAAGACATAACGCGACATG 60.268 52.381 15.93 17.67 0.00 3.21
7696 16359 2.267426 CCAAGACATAACGCGACATGA 58.733 47.619 24.29 2.80 0.00 3.07
7697 16360 2.866156 CCAAGACATAACGCGACATGAT 59.134 45.455 24.29 13.35 0.00 2.45
7698 16361 3.302675 CCAAGACATAACGCGACATGATG 60.303 47.826 24.29 19.00 0.00 3.07
7699 16362 2.473816 AGACATAACGCGACATGATGG 58.526 47.619 24.29 5.55 0.00 3.51
7700 16363 2.100749 AGACATAACGCGACATGATGGA 59.899 45.455 24.29 0.00 0.00 3.41
7701 16364 2.201732 ACATAACGCGACATGATGGAC 58.798 47.619 24.29 0.00 0.00 4.02
7702 16365 2.159099 ACATAACGCGACATGATGGACT 60.159 45.455 24.29 5.06 0.00 3.85
7703 16366 2.203800 TAACGCGACATGATGGACTC 57.796 50.000 15.93 0.00 0.00 3.36
7704 16367 0.460284 AACGCGACATGATGGACTCC 60.460 55.000 15.93 0.00 0.00 3.85
7705 16368 1.141665 CGCGACATGATGGACTCCA 59.858 57.895 0.00 0.00 38.19 3.86
7706 16369 0.873312 CGCGACATGATGGACTCCAG 60.873 60.000 0.00 0.00 36.75 3.86
7707 16370 0.176680 GCGACATGATGGACTCCAGT 59.823 55.000 0.00 0.00 36.75 4.00
7708 16371 1.409064 GCGACATGATGGACTCCAGTA 59.591 52.381 0.00 0.00 36.75 2.74
7709 16372 2.544694 GCGACATGATGGACTCCAGTAG 60.545 54.545 0.00 0.00 36.75 2.57
7710 16373 2.690497 CGACATGATGGACTCCAGTAGT 59.310 50.000 0.00 0.00 42.80 2.73
7711 16374 3.883489 CGACATGATGGACTCCAGTAGTA 59.117 47.826 0.00 0.00 39.07 1.82
7712 16375 4.023622 CGACATGATGGACTCCAGTAGTAG 60.024 50.000 0.00 0.00 39.07 2.57
7713 16376 4.873010 ACATGATGGACTCCAGTAGTAGT 58.127 43.478 0.00 0.00 39.07 2.73
7714 16377 6.014771 ACATGATGGACTCCAGTAGTAGTA 57.985 41.667 0.00 0.00 39.07 1.82
7715 16378 6.432581 ACATGATGGACTCCAGTAGTAGTAA 58.567 40.000 0.00 0.00 39.07 2.24
7716 16379 6.895756 ACATGATGGACTCCAGTAGTAGTAAA 59.104 38.462 0.00 0.00 39.07 2.01
7717 16380 7.399191 ACATGATGGACTCCAGTAGTAGTAAAA 59.601 37.037 0.00 0.00 39.07 1.52
7718 16381 7.786046 TGATGGACTCCAGTAGTAGTAAAAA 57.214 36.000 3.62 0.00 39.07 1.94
7741 16404 8.926715 AAAAACTCCAGTAAAACAGATGTTTC 57.073 30.769 11.13 0.89 46.47 2.78
7742 16405 7.881775 AAACTCCAGTAAAACAGATGTTTCT 57.118 32.000 11.13 3.10 46.47 2.52
7743 16406 7.881775 AACTCCAGTAAAACAGATGTTTCTT 57.118 32.000 11.13 0.28 46.47 2.52
7744 16407 8.974060 AACTCCAGTAAAACAGATGTTTCTTA 57.026 30.769 11.13 0.00 46.47 2.10
7745 16408 8.608844 ACTCCAGTAAAACAGATGTTTCTTAG 57.391 34.615 11.13 7.64 46.47 2.18
7746 16409 7.173390 ACTCCAGTAAAACAGATGTTTCTTAGC 59.827 37.037 11.13 1.82 46.47 3.09
7747 16410 7.224297 TCCAGTAAAACAGATGTTTCTTAGCT 58.776 34.615 11.13 0.00 46.47 3.32
7748 16411 7.173218 TCCAGTAAAACAGATGTTTCTTAGCTG 59.827 37.037 11.13 12.99 46.47 4.24
7749 16412 7.301054 CAGTAAAACAGATGTTTCTTAGCTGG 58.699 38.462 11.13 0.00 46.47 4.85
7750 16413 4.773323 AAACAGATGTTTCTTAGCTGGC 57.227 40.909 5.13 0.00 44.15 4.85
7751 16414 3.710209 ACAGATGTTTCTTAGCTGGCT 57.290 42.857 0.00 0.00 0.00 4.75
7752 16415 4.026356 ACAGATGTTTCTTAGCTGGCTT 57.974 40.909 0.00 0.00 0.00 4.35
7753 16416 3.755378 ACAGATGTTTCTTAGCTGGCTTG 59.245 43.478 0.00 0.00 0.00 4.01
7754 16417 3.755378 CAGATGTTTCTTAGCTGGCTTGT 59.245 43.478 0.00 0.00 0.00 3.16
7755 16418 4.937620 CAGATGTTTCTTAGCTGGCTTGTA 59.062 41.667 0.00 0.00 0.00 2.41
7756 16419 5.587844 CAGATGTTTCTTAGCTGGCTTGTAT 59.412 40.000 0.00 0.00 0.00 2.29
7757 16420 5.587844 AGATGTTTCTTAGCTGGCTTGTATG 59.412 40.000 0.00 0.00 0.00 2.39
7758 16421 4.651778 TGTTTCTTAGCTGGCTTGTATGT 58.348 39.130 0.00 0.00 0.00 2.29
7759 16422 4.695455 TGTTTCTTAGCTGGCTTGTATGTC 59.305 41.667 0.00 0.00 0.00 3.06
7760 16423 4.826274 TTCTTAGCTGGCTTGTATGTCT 57.174 40.909 0.00 0.00 0.00 3.41
7761 16424 4.128925 TCTTAGCTGGCTTGTATGTCTG 57.871 45.455 0.00 0.00 0.00 3.51
7762 16425 3.769300 TCTTAGCTGGCTTGTATGTCTGA 59.231 43.478 0.00 0.00 0.00 3.27
7763 16426 4.222810 TCTTAGCTGGCTTGTATGTCTGAA 59.777 41.667 0.00 0.00 0.00 3.02
7764 16427 2.983229 AGCTGGCTTGTATGTCTGAAG 58.017 47.619 0.00 0.00 0.00 3.02
7765 16428 2.304180 AGCTGGCTTGTATGTCTGAAGT 59.696 45.455 0.00 0.00 0.00 3.01
7766 16429 2.417933 GCTGGCTTGTATGTCTGAAGTG 59.582 50.000 0.00 0.00 0.00 3.16
7767 16430 2.417933 CTGGCTTGTATGTCTGAAGTGC 59.582 50.000 0.00 0.00 0.00 4.40
7768 16431 1.394917 GGCTTGTATGTCTGAAGTGCG 59.605 52.381 0.00 0.00 0.00 5.34
7769 16432 1.394917 GCTTGTATGTCTGAAGTGCGG 59.605 52.381 0.00 0.00 0.00 5.69
7770 16433 2.688507 CTTGTATGTCTGAAGTGCGGT 58.311 47.619 0.00 0.00 0.00 5.68
7771 16434 2.078849 TGTATGTCTGAAGTGCGGTG 57.921 50.000 0.00 0.00 0.00 4.94
7772 16435 1.337728 TGTATGTCTGAAGTGCGGTGG 60.338 52.381 0.00 0.00 0.00 4.61
7773 16436 0.391130 TATGTCTGAAGTGCGGTGGC 60.391 55.000 0.00 0.00 40.52 5.01
7774 16437 3.050275 GTCTGAAGTGCGGTGGCC 61.050 66.667 0.00 0.00 38.85 5.36
7775 16438 3.555324 TCTGAAGTGCGGTGGCCA 61.555 61.111 0.00 0.00 38.85 5.36
7776 16439 2.360350 CTGAAGTGCGGTGGCCAT 60.360 61.111 9.72 0.00 38.85 4.40
7777 16440 1.973281 CTGAAGTGCGGTGGCCATT 60.973 57.895 9.72 0.00 38.85 3.16
7778 16441 1.926511 CTGAAGTGCGGTGGCCATTC 61.927 60.000 9.72 8.29 38.85 2.67
7779 16442 1.675641 GAAGTGCGGTGGCCATTCT 60.676 57.895 9.72 0.09 38.85 2.40
7780 16443 1.648467 GAAGTGCGGTGGCCATTCTC 61.648 60.000 9.72 0.00 38.85 2.87
7781 16444 2.359850 GTGCGGTGGCCATTCTCA 60.360 61.111 9.72 2.79 38.85 3.27
7782 16445 1.750399 GTGCGGTGGCCATTCTCAT 60.750 57.895 9.72 0.00 38.85 2.90
7783 16446 1.750018 TGCGGTGGCCATTCTCATG 60.750 57.895 9.72 0.00 38.85 3.07
7784 16447 1.750399 GCGGTGGCCATTCTCATGT 60.750 57.895 9.72 0.00 0.00 3.21
7785 16448 0.463654 GCGGTGGCCATTCTCATGTA 60.464 55.000 9.72 0.00 0.00 2.29
7786 16449 2.016604 GCGGTGGCCATTCTCATGTAA 61.017 52.381 9.72 0.00 0.00 2.41
7787 16450 2.575532 CGGTGGCCATTCTCATGTAAT 58.424 47.619 9.72 0.00 0.00 1.89
7788 16451 3.738982 CGGTGGCCATTCTCATGTAATA 58.261 45.455 9.72 0.00 0.00 0.98
7789 16452 3.748048 CGGTGGCCATTCTCATGTAATAG 59.252 47.826 9.72 0.00 0.00 1.73
7790 16453 4.718961 GGTGGCCATTCTCATGTAATAGT 58.281 43.478 9.72 0.00 0.00 2.12
7791 16454 5.510690 CGGTGGCCATTCTCATGTAATAGTA 60.511 44.000 9.72 0.00 0.00 1.82
7792 16455 6.296026 GGTGGCCATTCTCATGTAATAGTAA 58.704 40.000 9.72 0.00 0.00 2.24
7793 16456 6.942576 GGTGGCCATTCTCATGTAATAGTAAT 59.057 38.462 9.72 0.00 0.00 1.89
7794 16457 7.119846 GGTGGCCATTCTCATGTAATAGTAATC 59.880 40.741 9.72 0.00 0.00 1.75
7795 16458 7.661437 GTGGCCATTCTCATGTAATAGTAATCA 59.339 37.037 9.72 0.00 0.00 2.57
7796 16459 8.217111 TGGCCATTCTCATGTAATAGTAATCAA 58.783 33.333 0.00 0.00 0.00 2.57
7797 16460 8.507249 GGCCATTCTCATGTAATAGTAATCAAC 58.493 37.037 0.00 0.00 0.00 3.18
7798 16461 9.277783 GCCATTCTCATGTAATAGTAATCAACT 57.722 33.333 0.00 0.00 42.62 3.16
7808 16471 9.990360 TGTAATAGTAATCAACTTGTTCAGACA 57.010 29.630 0.00 0.00 39.80 3.41
7813 16476 8.902540 AGTAATCAACTTGTTCAGACATAACA 57.097 30.769 0.00 0.00 33.35 2.41
7814 16477 9.337396 AGTAATCAACTTGTTCAGACATAACAA 57.663 29.630 0.00 0.00 42.83 2.83
7819 16482 2.790433 TGTTCAGACATAACAAGGGCC 58.210 47.619 0.00 0.00 34.04 5.80
7820 16483 2.107378 TGTTCAGACATAACAAGGGCCA 59.893 45.455 6.18 0.00 34.04 5.36
7821 16484 3.245229 TGTTCAGACATAACAAGGGCCAT 60.245 43.478 6.18 0.00 34.04 4.40
7822 16485 3.737559 TCAGACATAACAAGGGCCATT 57.262 42.857 6.18 0.00 0.00 3.16
7823 16486 4.046286 TCAGACATAACAAGGGCCATTT 57.954 40.909 6.18 0.00 0.00 2.32
7824 16487 3.763360 TCAGACATAACAAGGGCCATTTG 59.237 43.478 15.46 15.46 0.00 2.32
7825 16488 3.099141 AGACATAACAAGGGCCATTTGG 58.901 45.455 19.66 5.20 38.53 3.28
7877 16540 9.074443 GTAGTATGAGAAAAGGTAAGAAAGACG 57.926 37.037 0.00 0.00 0.00 4.18
7878 16541 7.668492 AGTATGAGAAAAGGTAAGAAAGACGT 58.332 34.615 0.00 0.00 0.00 4.34
7879 16542 8.800332 AGTATGAGAAAAGGTAAGAAAGACGTA 58.200 33.333 0.00 0.00 0.00 3.57
7880 16543 9.074443 GTATGAGAAAAGGTAAGAAAGACGTAG 57.926 37.037 0.00 0.00 0.00 3.51
7881 16544 7.281040 TGAGAAAAGGTAAGAAAGACGTAGA 57.719 36.000 0.00 0.00 0.00 2.59
7882 16545 7.144000 TGAGAAAAGGTAAGAAAGACGTAGAC 58.856 38.462 0.00 0.00 0.00 2.59
7883 16546 7.014038 TGAGAAAAGGTAAGAAAGACGTAGACT 59.986 37.037 0.00 0.00 0.00 3.24
7884 16547 7.146648 AGAAAAGGTAAGAAAGACGTAGACTG 58.853 38.462 0.00 0.00 30.05 3.51
7885 16548 6.645790 AAAGGTAAGAAAGACGTAGACTGA 57.354 37.500 0.00 0.00 30.05 3.41
7886 16549 6.837471 AAGGTAAGAAAGACGTAGACTGAT 57.163 37.500 0.00 0.00 30.05 2.90
7887 16550 7.934855 AAGGTAAGAAAGACGTAGACTGATA 57.065 36.000 0.00 0.00 30.05 2.15
7888 16551 8.522542 AAGGTAAGAAAGACGTAGACTGATAT 57.477 34.615 0.00 0.00 30.05 1.63
7889 16552 8.156994 AGGTAAGAAAGACGTAGACTGATATC 57.843 38.462 0.00 0.00 30.05 1.63
7890 16553 7.994334 AGGTAAGAAAGACGTAGACTGATATCT 59.006 37.037 3.98 0.00 30.05 1.98
7891 16554 8.623030 GGTAAGAAAGACGTAGACTGATATCTT 58.377 37.037 3.98 0.00 30.05 2.40
7895 16558 8.842280 AGAAAGACGTAGACTGATATCTTAAGG 58.158 37.037 3.98 0.00 30.05 2.69
7896 16559 6.563222 AGACGTAGACTGATATCTTAAGGC 57.437 41.667 3.98 0.00 0.00 4.35
7897 16560 6.062749 AGACGTAGACTGATATCTTAAGGCA 58.937 40.000 3.98 0.00 0.00 4.75
7898 16561 6.546403 AGACGTAGACTGATATCTTAAGGCAA 59.454 38.462 3.98 0.00 0.00 4.52
7899 16562 7.068348 AGACGTAGACTGATATCTTAAGGCAAA 59.932 37.037 3.98 0.00 0.00 3.68
7900 16563 7.727181 ACGTAGACTGATATCTTAAGGCAAAT 58.273 34.615 3.98 0.00 0.00 2.32
7901 16564 7.868415 ACGTAGACTGATATCTTAAGGCAAATC 59.132 37.037 3.98 2.15 0.00 2.17
7902 16565 8.085296 CGTAGACTGATATCTTAAGGCAAATCT 58.915 37.037 3.98 5.37 0.00 2.40
7903 16566 9.771534 GTAGACTGATATCTTAAGGCAAATCTT 57.228 33.333 3.98 0.00 0.00 2.40
7904 16567 8.900983 AGACTGATATCTTAAGGCAAATCTTC 57.099 34.615 3.98 3.22 0.00 2.87
7905 16568 7.936301 AGACTGATATCTTAAGGCAAATCTTCC 59.064 37.037 3.98 0.00 0.00 3.46
7906 16569 7.810260 ACTGATATCTTAAGGCAAATCTTCCT 58.190 34.615 3.98 0.00 0.00 3.36
7907 16570 8.938883 ACTGATATCTTAAGGCAAATCTTCCTA 58.061 33.333 3.98 0.00 31.24 2.94
7908 16571 9.784531 CTGATATCTTAAGGCAAATCTTCCTAA 57.215 33.333 3.98 0.00 31.24 2.69
7909 16572 9.784531 TGATATCTTAAGGCAAATCTTCCTAAG 57.215 33.333 3.98 0.00 31.24 2.18
7921 16584 5.965033 ATCTTCCTAAGATCAGCCTTCAA 57.035 39.130 0.00 0.00 44.79 2.69
7922 16585 5.762179 TCTTCCTAAGATCAGCCTTCAAA 57.238 39.130 0.00 0.00 31.20 2.69
7923 16586 5.491982 TCTTCCTAAGATCAGCCTTCAAAC 58.508 41.667 0.00 0.00 31.20 2.93
7924 16587 5.249393 TCTTCCTAAGATCAGCCTTCAAACT 59.751 40.000 0.00 0.00 31.20 2.66
7925 16588 5.091261 TCCTAAGATCAGCCTTCAAACTC 57.909 43.478 0.00 0.00 0.00 3.01
7926 16589 4.080863 TCCTAAGATCAGCCTTCAAACTCC 60.081 45.833 0.00 0.00 0.00 3.85
7927 16590 3.795688 AAGATCAGCCTTCAAACTCCA 57.204 42.857 0.00 0.00 0.00 3.86
7928 16591 3.347077 AGATCAGCCTTCAAACTCCAG 57.653 47.619 0.00 0.00 0.00 3.86
7929 16592 2.641815 AGATCAGCCTTCAAACTCCAGT 59.358 45.455 0.00 0.00 0.00 4.00
7930 16593 3.840666 AGATCAGCCTTCAAACTCCAGTA 59.159 43.478 0.00 0.00 0.00 2.74
7931 16594 3.685139 TCAGCCTTCAAACTCCAGTAG 57.315 47.619 0.00 0.00 0.00 2.57
7932 16595 2.972713 TCAGCCTTCAAACTCCAGTAGT 59.027 45.455 0.00 0.00 41.49 2.73
7933 16596 3.070018 CAGCCTTCAAACTCCAGTAGTG 58.930 50.000 0.00 0.00 38.88 2.74
7934 16597 2.039084 AGCCTTCAAACTCCAGTAGTGG 59.961 50.000 10.66 10.66 46.63 4.00
7935 16598 2.224548 GCCTTCAAACTCCAGTAGTGGT 60.225 50.000 16.36 0.00 45.28 4.16
7936 16599 3.007614 GCCTTCAAACTCCAGTAGTGGTA 59.992 47.826 16.36 2.86 45.28 3.25
7937 16600 4.504340 GCCTTCAAACTCCAGTAGTGGTAA 60.504 45.833 16.36 0.00 45.28 2.85
7938 16601 5.617252 CCTTCAAACTCCAGTAGTGGTAAA 58.383 41.667 16.36 0.00 45.28 2.01
7939 16602 6.059484 CCTTCAAACTCCAGTAGTGGTAAAA 58.941 40.000 16.36 0.00 45.28 1.52
7940 16603 6.017357 CCTTCAAACTCCAGTAGTGGTAAAAC 60.017 42.308 16.36 0.00 45.28 2.43
7941 16604 5.991861 TCAAACTCCAGTAGTGGTAAAACA 58.008 37.500 16.36 0.00 45.28 2.83
7942 16605 6.053005 TCAAACTCCAGTAGTGGTAAAACAG 58.947 40.000 16.36 7.73 45.28 3.16
7943 16606 5.881923 AACTCCAGTAGTGGTAAAACAGA 57.118 39.130 16.36 0.00 45.28 3.41
7944 16607 5.470047 ACTCCAGTAGTGGTAAAACAGAG 57.530 43.478 16.36 6.33 45.28 3.35
7945 16608 4.900054 ACTCCAGTAGTGGTAAAACAGAGT 59.100 41.667 16.36 6.95 45.28 3.24
7946 16609 5.010820 ACTCCAGTAGTGGTAAAACAGAGTC 59.989 44.000 16.36 0.00 45.28 3.36
7947 16610 4.897076 TCCAGTAGTGGTAAAACAGAGTCA 59.103 41.667 16.36 0.00 45.28 3.41
7948 16611 5.542635 TCCAGTAGTGGTAAAACAGAGTCAT 59.457 40.000 16.36 0.00 45.28 3.06
7949 16612 5.869888 CCAGTAGTGGTAAAACAGAGTCATC 59.130 44.000 8.59 0.00 39.30 2.92
7950 16613 6.295349 CCAGTAGTGGTAAAACAGAGTCATCT 60.295 42.308 8.59 0.00 39.30 2.90
7951 16614 7.155328 CAGTAGTGGTAAAACAGAGTCATCTT 58.845 38.462 0.00 0.00 31.64 2.40
7952 16615 7.657761 CAGTAGTGGTAAAACAGAGTCATCTTT 59.342 37.037 0.00 0.00 31.64 2.52
7953 16616 7.873505 AGTAGTGGTAAAACAGAGTCATCTTTC 59.126 37.037 0.00 0.00 31.64 2.62
7954 16617 6.831976 AGTGGTAAAACAGAGTCATCTTTCT 58.168 36.000 0.00 0.00 31.64 2.52
7955 16618 7.283329 AGTGGTAAAACAGAGTCATCTTTCTT 58.717 34.615 0.00 0.00 31.64 2.52
7956 16619 7.775561 AGTGGTAAAACAGAGTCATCTTTCTTT 59.224 33.333 0.00 0.00 31.64 2.52
7957 16620 9.052759 GTGGTAAAACAGAGTCATCTTTCTTTA 57.947 33.333 0.00 0.00 31.64 1.85
7958 16621 9.621629 TGGTAAAACAGAGTCATCTTTCTTTAA 57.378 29.630 0.00 0.00 31.64 1.52
7962 16625 9.971922 AAAACAGAGTCATCTTTCTTTAATTGG 57.028 29.630 0.00 0.00 31.64 3.16
7963 16626 7.150783 ACAGAGTCATCTTTCTTTAATTGGC 57.849 36.000 0.00 0.00 31.64 4.52
7964 16627 6.128172 ACAGAGTCATCTTTCTTTAATTGGCG 60.128 38.462 0.00 0.00 31.64 5.69
7965 16628 5.940470 AGAGTCATCTTTCTTTAATTGGCGT 59.060 36.000 0.00 0.00 28.57 5.68
7966 16629 5.942872 AGTCATCTTTCTTTAATTGGCGTG 58.057 37.500 0.00 0.00 0.00 5.34
7967 16630 5.473504 AGTCATCTTTCTTTAATTGGCGTGT 59.526 36.000 0.00 0.00 0.00 4.49
7968 16631 6.016276 AGTCATCTTTCTTTAATTGGCGTGTT 60.016 34.615 0.00 0.00 0.00 3.32
7969 16632 6.088085 GTCATCTTTCTTTAATTGGCGTGTTG 59.912 38.462 0.00 0.00 0.00 3.33
7970 16633 5.759506 TCTTTCTTTAATTGGCGTGTTGA 57.240 34.783 0.00 0.00 0.00 3.18
7971 16634 6.325919 TCTTTCTTTAATTGGCGTGTTGAT 57.674 33.333 0.00 0.00 0.00 2.57
7972 16635 6.744112 TCTTTCTTTAATTGGCGTGTTGATT 58.256 32.000 0.00 0.00 0.00 2.57
7973 16636 6.640499 TCTTTCTTTAATTGGCGTGTTGATTG 59.360 34.615 0.00 0.00 0.00 2.67
7974 16637 4.804108 TCTTTAATTGGCGTGTTGATTGG 58.196 39.130 0.00 0.00 0.00 3.16
7975 16638 4.279671 TCTTTAATTGGCGTGTTGATTGGT 59.720 37.500 0.00 0.00 0.00 3.67
7976 16639 4.592485 TTAATTGGCGTGTTGATTGGTT 57.408 36.364 0.00 0.00 0.00 3.67
7977 16640 2.437200 ATTGGCGTGTTGATTGGTTG 57.563 45.000 0.00 0.00 0.00 3.77
7978 16641 0.387202 TTGGCGTGTTGATTGGTTGG 59.613 50.000 0.00 0.00 0.00 3.77
7979 16642 0.466372 TGGCGTGTTGATTGGTTGGA 60.466 50.000 0.00 0.00 0.00 3.53
7980 16643 0.240945 GGCGTGTTGATTGGTTGGAG 59.759 55.000 0.00 0.00 0.00 3.86
7981 16644 1.234821 GCGTGTTGATTGGTTGGAGA 58.765 50.000 0.00 0.00 0.00 3.71
7982 16645 1.069227 GCGTGTTGATTGGTTGGAGAC 60.069 52.381 0.00 0.00 0.00 3.36
7983 16646 2.217750 CGTGTTGATTGGTTGGAGACA 58.782 47.619 0.00 0.00 39.83 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
198 199 0.238289 GCCGACAACAACAGGTCATG 59.762 55.000 0.00 0.00 33.66 3.07
226 228 4.139038 TGGGTGCATCATCATACAGATTG 58.861 43.478 0.00 0.00 33.72 2.67
232 234 3.544684 TCAGTTGGGTGCATCATCATAC 58.455 45.455 0.00 0.00 0.00 2.39
272 277 6.823689 TGAGAGGAATAAGATGGCTTTACAAC 59.176 38.462 0.00 0.00 35.56 3.32
286 291 6.053632 TGCAGAGTTCATTGAGAGGAATAA 57.946 37.500 0.00 0.00 0.00 1.40
288 293 4.564782 TGCAGAGTTCATTGAGAGGAAT 57.435 40.909 0.00 0.00 0.00 3.01
316 323 6.046917 TGTATTAGTATTAGGAGGGGGTGT 57.953 41.667 0.00 0.00 0.00 4.16
406 1838 7.403312 AATATCAAATGACAATTTCCCGACA 57.597 32.000 0.00 0.00 33.59 4.35
407 1839 8.702163 AAAATATCAAATGACAATTTCCCGAC 57.298 30.769 6.20 0.00 33.59 4.79
408 1840 9.364989 GAAAAATATCAAATGACAATTTCCCGA 57.635 29.630 6.20 0.00 33.59 5.14
409 1841 9.369904 AGAAAAATATCAAATGACAATTTCCCG 57.630 29.630 6.20 0.00 33.59 5.14
411 1843 9.977762 GCAGAAAAATATCAAATGACAATTTCC 57.022 29.630 6.20 3.56 33.59 3.13
412 1844 9.977762 GGCAGAAAAATATCAAATGACAATTTC 57.022 29.630 6.20 5.78 33.59 2.17
413 1845 8.949177 GGGCAGAAAAATATCAAATGACAATTT 58.051 29.630 0.00 0.00 36.39 1.82
414 1846 8.102047 TGGGCAGAAAAATATCAAATGACAATT 58.898 29.630 0.00 0.00 0.00 2.32
415 1847 7.622713 TGGGCAGAAAAATATCAAATGACAAT 58.377 30.769 0.00 0.00 0.00 2.71
416 1848 7.002250 TGGGCAGAAAAATATCAAATGACAA 57.998 32.000 0.00 0.00 0.00 3.18
417 1849 6.602410 TGGGCAGAAAAATATCAAATGACA 57.398 33.333 0.00 0.00 0.00 3.58
418 1850 6.418819 CGATGGGCAGAAAAATATCAAATGAC 59.581 38.462 0.00 0.00 0.00 3.06
419 1851 6.096705 ACGATGGGCAGAAAAATATCAAATGA 59.903 34.615 0.00 0.00 0.00 2.57
420 1852 6.275335 ACGATGGGCAGAAAAATATCAAATG 58.725 36.000 0.00 0.00 0.00 2.32
421 1853 6.469782 ACGATGGGCAGAAAAATATCAAAT 57.530 33.333 0.00 0.00 0.00 2.32
422 1854 5.913137 ACGATGGGCAGAAAAATATCAAA 57.087 34.783 0.00 0.00 0.00 2.69
472 1904 0.603707 TGGAAGTCCGCTTGAGCAAG 60.604 55.000 5.88 5.88 42.21 4.01
523 1955 2.112928 ACCACTCACCGCATGCAA 59.887 55.556 19.57 0.00 0.00 4.08
595 2067 0.841961 CCTGGATCTGGGAGCATGAA 59.158 55.000 0.00 0.00 0.00 2.57
633 2105 6.239402 GGCAAAAATGTAGGCAGATAATCCAT 60.239 38.462 0.00 0.00 0.00 3.41
668 2149 8.497554 TGTGTATACAAACGAAAGGTAAATCAC 58.502 33.333 7.25 0.00 32.88 3.06
896 2418 1.077930 GAAAGGGAAGGGGCGTACC 60.078 63.158 0.00 0.00 39.11 3.34
899 2421 1.726192 AAAGGAAAGGGAAGGGGCGT 61.726 55.000 0.00 0.00 0.00 5.68
901 2423 1.347707 CAAAAAGGAAAGGGAAGGGGC 59.652 52.381 0.00 0.00 0.00 5.80
950 2472 4.665451 TGAACCAACACATCATCTCCATT 58.335 39.130 0.00 0.00 0.00 3.16
951 2473 4.305539 TGAACCAACACATCATCTCCAT 57.694 40.909 0.00 0.00 0.00 3.41
1095 2625 3.763897 TGACGTCCATCTTCTTGATCTCA 59.236 43.478 14.12 0.00 32.05 3.27
1276 2806 2.753043 GCACCCCACATCTGCAGG 60.753 66.667 15.13 0.36 0.00 4.85
2034 3568 7.254692 GGAGTTTAGTTACACACCTGTTTCTTC 60.255 40.741 0.00 0.00 0.00 2.87
2230 4243 7.023575 GTCAAAATATTGTGCCTTCTGTACAG 58.976 38.462 17.17 17.17 40.82 2.74
2290 4308 1.290009 GTTGTTGTGGGAGCATGGC 59.710 57.895 0.00 0.00 0.00 4.40
2396 4492 4.935352 AACAGAGGCAACATAGCAAAAA 57.065 36.364 0.00 0.00 41.41 1.94
2456 4849 2.740447 GGACTTACGTTTTAGGTGGCAG 59.260 50.000 0.00 0.00 0.00 4.85
2635 7075 8.497554 CAACTTTTTCATATTGTGGATTTGTGG 58.502 33.333 0.00 0.00 0.00 4.17
2692 7133 2.243478 TGGCTAAACCTATTCATGGGCA 59.757 45.455 0.00 0.00 40.22 5.36
2842 7326 2.542595 ACCTTAGTTCAAAGTTGCGACG 59.457 45.455 0.00 0.00 0.00 5.12
2865 7349 5.388475 CGGAAAACAGAGTCATTAAGTGTCG 60.388 44.000 0.00 0.00 0.00 4.35
2866 7350 5.107065 CCGGAAAACAGAGTCATTAAGTGTC 60.107 44.000 0.00 0.00 0.00 3.67
2867 7351 4.755123 CCGGAAAACAGAGTCATTAAGTGT 59.245 41.667 0.00 0.00 0.00 3.55
2868 7352 4.994852 TCCGGAAAACAGAGTCATTAAGTG 59.005 41.667 0.00 0.00 0.00 3.16
2870 7354 5.479306 TCTCCGGAAAACAGAGTCATTAAG 58.521 41.667 5.23 0.00 0.00 1.85
2871 7355 5.477607 TCTCCGGAAAACAGAGTCATTAA 57.522 39.130 5.23 0.00 0.00 1.40
2917 8912 5.809562 ACAAGATGCTTAGTTCAATCTCTCG 59.190 40.000 0.00 0.00 0.00 4.04
3205 9346 9.939802 TCATCAATCTCACTTGATAATATCTGG 57.060 33.333 1.66 0.00 42.52 3.86
3865 10010 9.757227 GAATCACCAGGCTTGATATCTATATAC 57.243 37.037 3.98 0.00 32.29 1.47
3928 10076 4.346734 AGCTACAACATTTGCAGAATCG 57.653 40.909 0.00 0.00 0.00 3.34
4119 10267 5.220605 GCAATGAAGTTAAGGTACCTTAGCG 60.221 44.000 31.13 21.30 42.15 4.26
4297 10445 7.066307 TGCAGATGAGGAAGCAGTTATATTA 57.934 36.000 0.00 0.00 32.48 0.98
4688 12113 9.113838 GTGATTGTAGGATTGTATGAATTCAGT 57.886 33.333 14.54 5.12 0.00 3.41
4731 12156 0.040058 AAATGCAGCCACCATCTGGA 59.960 50.000 2.55 0.00 43.95 3.86
4929 12354 3.088532 AGAGAGATGAGACTGTGGACAC 58.911 50.000 0.00 0.00 0.00 3.67
4984 12409 3.652869 TCTCCAGGTCAAGGTTTTCATCT 59.347 43.478 0.00 0.00 0.00 2.90
5198 12623 1.870167 GCTAGATTGTCCCGCAGCTAC 60.870 57.143 0.00 0.00 0.00 3.58
5306 12731 2.360165 CCAAATTGTAGGGATCAGCTGC 59.640 50.000 9.47 0.00 0.00 5.25
5600 13121 9.974750 GAGAACAATAGTAACTAAGCAAATGAC 57.025 33.333 0.00 0.00 0.00 3.06
5676 13253 4.471904 AGTCAAGAACTCAACTGTGACA 57.528 40.909 4.60 0.00 38.24 3.58
5759 13337 4.805192 CCAAATTGTTGTGTGTCCTCAAAG 59.195 41.667 0.00 0.00 32.40 2.77
5782 13360 9.528018 TTTTTCTTGTCATTTTGAAGACATACC 57.472 29.630 0.00 0.00 43.57 2.73
5944 13523 0.186873 GGACCCTATGGACTCCGGTA 59.813 60.000 0.00 0.00 34.81 4.02
5966 13545 0.249868 TTGACTCGCTCACACCAAGG 60.250 55.000 0.00 0.00 0.00 3.61
6002 13581 0.725686 CAGCCACAATGAAGCTCTCG 59.274 55.000 0.00 0.00 33.70 4.04
6078 13657 7.116805 GTGGATCTTTTCAAACATGGATTTGAC 59.883 37.037 10.18 0.55 45.84 3.18
6157 13736 0.036010 CTTCTCACGGTCCCAGCATT 60.036 55.000 0.00 0.00 0.00 3.56
6159 13738 1.118965 TTCTTCTCACGGTCCCAGCA 61.119 55.000 0.00 0.00 0.00 4.41
6160 13739 0.250513 ATTCTTCTCACGGTCCCAGC 59.749 55.000 0.00 0.00 0.00 4.85
6182 13761 4.084287 TGACGAGTTGTACTAGGATGGTT 58.916 43.478 0.00 0.00 0.00 3.67
6184 13763 4.920640 ATGACGAGTTGTACTAGGATGG 57.079 45.455 0.00 0.00 0.00 3.51
6290 13869 2.777692 ACCCTTCTCACACTCCTTGAAA 59.222 45.455 0.00 0.00 0.00 2.69
6395 13974 0.833287 TGAGTAGCCATGGGAGAAGC 59.167 55.000 15.13 0.00 0.00 3.86
6441 14020 8.758829 TCTACTATTGAACTCTGCTTTGGAATA 58.241 33.333 0.00 0.00 0.00 1.75
6449 14028 5.984695 TGTGTCTACTATTGAACTCTGCT 57.015 39.130 0.00 0.00 0.00 4.24
6464 14043 0.179070 TTGTGGCTGCGTTGTGTCTA 60.179 50.000 0.00 0.00 0.00 2.59
6526 14108 1.810532 GTCTCTCCCTGCAGGTACG 59.189 63.158 30.63 16.20 36.75 3.67
6562 14144 6.245408 TGGATTGTGGCAACTATAGTTTTCT 58.755 36.000 15.60 0.00 35.83 2.52
6617 14199 3.073356 TGGCTGCATCATCTTCCATATCA 59.927 43.478 0.50 0.00 0.00 2.15
6654 14248 0.912487 TCCCCACTGTAATCCGGCTT 60.912 55.000 0.00 0.00 0.00 4.35
6723 14320 0.645868 GTGGTCGAGAAGTATTGCGC 59.354 55.000 0.00 0.00 0.00 6.09
6736 14333 1.819928 TTTGGATGACATGGTGGTCG 58.180 50.000 0.00 0.00 40.72 4.79
6869 14467 2.224670 ACATCCACCAAGCCGACTAAAA 60.225 45.455 0.00 0.00 0.00 1.52
6870 14468 1.349688 ACATCCACCAAGCCGACTAAA 59.650 47.619 0.00 0.00 0.00 1.85
6871 14469 0.981183 ACATCCACCAAGCCGACTAA 59.019 50.000 0.00 0.00 0.00 2.24
6872 14470 1.754803 CTACATCCACCAAGCCGACTA 59.245 52.381 0.00 0.00 0.00 2.59
6880 14478 2.467880 GTCCTCCTCTACATCCACCAA 58.532 52.381 0.00 0.00 0.00 3.67
6909 14519 2.048603 CCCTAAGCCTGTTGCAGCC 61.049 63.158 0.00 0.00 44.83 4.85
6923 14533 4.733077 TGTTCCTTGTTTTCATCCCCTA 57.267 40.909 0.00 0.00 0.00 3.53
6960 14572 1.521616 CCTCTCTTCCTCTGCTGCC 59.478 63.158 0.00 0.00 0.00 4.85
7016 14658 3.756434 GCAGGAAAATGTACCAAGCAGTA 59.244 43.478 0.00 0.00 32.54 2.74
7023 14665 5.324409 AGAATGAAGCAGGAAAATGTACCA 58.676 37.500 0.00 0.00 0.00 3.25
7024 14666 5.904362 AGAATGAAGCAGGAAAATGTACC 57.096 39.130 0.00 0.00 0.00 3.34
7053 14695 0.718343 CAAGACTCTAAGCACAGCGC 59.282 55.000 0.00 0.00 42.91 5.92
7054 14696 1.337260 ACCAAGACTCTAAGCACAGCG 60.337 52.381 0.00 0.00 0.00 5.18
7077 14719 1.613630 GCTGGAACTGAGGGAGGGA 60.614 63.158 0.00 0.00 0.00 4.20
7078 14720 1.492133 TTGCTGGAACTGAGGGAGGG 61.492 60.000 0.00 0.00 0.00 4.30
7079 14721 0.622665 ATTGCTGGAACTGAGGGAGG 59.377 55.000 0.00 0.00 0.00 4.30
7080 14722 3.135348 TGATATTGCTGGAACTGAGGGAG 59.865 47.826 0.00 0.00 0.00 4.30
7088 14730 5.449177 GCCAGTAGTTTGATATTGCTGGAAC 60.449 44.000 11.42 0.00 43.22 3.62
7110 14777 1.332375 TGTTCTGCTTAACACGTTGCC 59.668 47.619 0.00 0.00 34.50 4.52
7135 14805 6.393990 ACACAAGAGTTTCAGCTACTAGATG 58.606 40.000 0.00 0.00 31.83 2.90
7201 14873 2.223595 CCGCGCATAGTATAGCAGCTAT 60.224 50.000 19.07 19.07 0.00 2.97
7505 15354 0.729116 CAGCTAGCCACATTTGTCCG 59.271 55.000 12.13 0.00 0.00 4.79
7506 15355 0.453390 GCAGCTAGCCACATTTGTCC 59.547 55.000 12.13 0.00 37.23 4.02
7539 15402 5.656480 CATCAACTGATGGATGCAAATTGA 58.344 37.500 11.22 0.00 46.09 2.57
7540 15403 5.966636 CATCAACTGATGGATGCAAATTG 57.033 39.130 11.22 0.00 46.09 2.32
7606 16269 8.932610 TGGCCCAAACATATGTATTTCATAAAT 58.067 29.630 9.21 0.00 41.57 1.40
7608 16271 7.563188 ACTGGCCCAAACATATGTATTTCATAA 59.437 33.333 9.21 0.00 41.57 1.90
7613 16276 6.431722 ACTACTGGCCCAAACATATGTATTT 58.568 36.000 9.21 0.00 0.00 1.40
7614 16277 6.013554 ACTACTGGCCCAAACATATGTATT 57.986 37.500 9.21 3.31 0.00 1.89
7616 16279 5.444744 AACTACTGGCCCAAACATATGTA 57.555 39.130 9.21 0.00 0.00 2.29
7617 16280 4.316025 AACTACTGGCCCAAACATATGT 57.684 40.909 1.41 1.41 0.00 2.29
7618 16281 5.659440 AAAACTACTGGCCCAAACATATG 57.341 39.130 0.00 0.00 0.00 1.78
7619 16282 6.249951 TGTAAAACTACTGGCCCAAACATAT 58.750 36.000 0.00 0.00 0.00 1.78
7620 16283 5.632118 TGTAAAACTACTGGCCCAAACATA 58.368 37.500 0.00 0.00 0.00 2.29
7636 16299 7.330946 GTCAATAGCCCTTCCATTTTGTAAAAC 59.669 37.037 0.00 0.00 0.00 2.43
7638 16301 6.349777 CGTCAATAGCCCTTCCATTTTGTAAA 60.350 38.462 0.00 0.00 0.00 2.01
7641 16304 3.443681 CGTCAATAGCCCTTCCATTTTGT 59.556 43.478 0.00 0.00 0.00 2.83
7642 16305 3.694072 TCGTCAATAGCCCTTCCATTTTG 59.306 43.478 0.00 0.00 0.00 2.44
7643 16306 3.963129 TCGTCAATAGCCCTTCCATTTT 58.037 40.909 0.00 0.00 0.00 1.82
7644 16307 3.644966 TCGTCAATAGCCCTTCCATTT 57.355 42.857 0.00 0.00 0.00 2.32
7648 16311 2.552031 GACTTCGTCAATAGCCCTTCC 58.448 52.381 0.00 0.00 32.09 3.46
7649 16312 2.552031 GGACTTCGTCAATAGCCCTTC 58.448 52.381 0.00 0.00 33.68 3.46
7654 16317 2.961526 TCAGGGACTTCGTCAATAGC 57.038 50.000 0.00 0.00 34.60 2.97
7676 16339 2.267426 TCATGTCGCGTTATGTCTTGG 58.733 47.619 19.26 0.56 0.00 3.61
7680 16343 2.218759 GTCCATCATGTCGCGTTATGTC 59.781 50.000 19.26 7.68 0.00 3.06
7681 16344 2.159099 AGTCCATCATGTCGCGTTATGT 60.159 45.455 19.26 8.83 0.00 2.29
7682 16345 2.472861 GAGTCCATCATGTCGCGTTATG 59.527 50.000 5.77 12.27 0.00 1.90
7683 16346 2.545952 GGAGTCCATCATGTCGCGTTAT 60.546 50.000 5.77 0.00 0.00 1.89
7684 16347 1.202371 GGAGTCCATCATGTCGCGTTA 60.202 52.381 5.77 0.00 0.00 3.18
7685 16348 0.460284 GGAGTCCATCATGTCGCGTT 60.460 55.000 5.77 0.00 0.00 4.84
7686 16349 1.141881 GGAGTCCATCATGTCGCGT 59.858 57.895 5.77 0.00 0.00 6.01
7687 16350 0.873312 CTGGAGTCCATCATGTCGCG 60.873 60.000 13.56 0.00 30.82 5.87
7688 16351 0.176680 ACTGGAGTCCATCATGTCGC 59.823 55.000 13.56 0.00 30.82 5.19
7689 16352 2.690497 ACTACTGGAGTCCATCATGTCG 59.310 50.000 13.56 5.82 29.95 4.35
7690 16353 4.890581 ACTACTACTGGAGTCCATCATGTC 59.109 45.833 13.56 0.00 39.81 3.06
7691 16354 4.873010 ACTACTACTGGAGTCCATCATGT 58.127 43.478 13.56 9.69 39.81 3.21
7692 16355 6.961360 TTACTACTACTGGAGTCCATCATG 57.039 41.667 13.56 3.16 39.81 3.07
7693 16356 7.973048 TTTTACTACTACTGGAGTCCATCAT 57.027 36.000 13.56 4.10 39.81 2.45
7694 16357 7.786046 TTTTTACTACTACTGGAGTCCATCA 57.214 36.000 13.56 2.30 39.81 3.07
7730 16393 4.026356 AGCCAGCTAAGAAACATCTGTT 57.974 40.909 0.00 0.00 40.50 3.16
7731 16394 3.710209 AGCCAGCTAAGAAACATCTGT 57.290 42.857 0.00 0.00 0.00 3.41
7732 16395 3.755378 ACAAGCCAGCTAAGAAACATCTG 59.245 43.478 0.00 0.00 0.00 2.90
7733 16396 4.026356 ACAAGCCAGCTAAGAAACATCT 57.974 40.909 0.00 0.00 0.00 2.90
7734 16397 5.355350 ACATACAAGCCAGCTAAGAAACATC 59.645 40.000 0.00 0.00 0.00 3.06
7735 16398 5.256474 ACATACAAGCCAGCTAAGAAACAT 58.744 37.500 0.00 0.00 0.00 2.71
7736 16399 4.651778 ACATACAAGCCAGCTAAGAAACA 58.348 39.130 0.00 0.00 0.00 2.83
7737 16400 4.938226 AGACATACAAGCCAGCTAAGAAAC 59.062 41.667 0.00 0.00 0.00 2.78
7738 16401 4.937620 CAGACATACAAGCCAGCTAAGAAA 59.062 41.667 0.00 0.00 0.00 2.52
7739 16402 4.222810 TCAGACATACAAGCCAGCTAAGAA 59.777 41.667 0.00 0.00 0.00 2.52
7740 16403 3.769300 TCAGACATACAAGCCAGCTAAGA 59.231 43.478 0.00 0.00 0.00 2.10
7741 16404 4.128925 TCAGACATACAAGCCAGCTAAG 57.871 45.455 0.00 0.00 0.00 2.18
7742 16405 4.020218 ACTTCAGACATACAAGCCAGCTAA 60.020 41.667 0.00 0.00 0.00 3.09
7743 16406 3.515502 ACTTCAGACATACAAGCCAGCTA 59.484 43.478 0.00 0.00 0.00 3.32
7744 16407 2.304180 ACTTCAGACATACAAGCCAGCT 59.696 45.455 0.00 0.00 0.00 4.24
7745 16408 2.417933 CACTTCAGACATACAAGCCAGC 59.582 50.000 0.00 0.00 0.00 4.85
7746 16409 2.417933 GCACTTCAGACATACAAGCCAG 59.582 50.000 0.00 0.00 0.00 4.85
7747 16410 2.426522 GCACTTCAGACATACAAGCCA 58.573 47.619 0.00 0.00 0.00 4.75
7748 16411 1.394917 CGCACTTCAGACATACAAGCC 59.605 52.381 0.00 0.00 0.00 4.35
7749 16412 1.394917 CCGCACTTCAGACATACAAGC 59.605 52.381 0.00 0.00 0.00 4.01
7750 16413 2.413112 CACCGCACTTCAGACATACAAG 59.587 50.000 0.00 0.00 0.00 3.16
7751 16414 2.412870 CACCGCACTTCAGACATACAA 58.587 47.619 0.00 0.00 0.00 2.41
7752 16415 1.337728 CCACCGCACTTCAGACATACA 60.338 52.381 0.00 0.00 0.00 2.29
7753 16416 1.359848 CCACCGCACTTCAGACATAC 58.640 55.000 0.00 0.00 0.00 2.39
7754 16417 0.391130 GCCACCGCACTTCAGACATA 60.391 55.000 0.00 0.00 34.03 2.29
7755 16418 1.672356 GCCACCGCACTTCAGACAT 60.672 57.895 0.00 0.00 34.03 3.06
7756 16419 2.280797 GCCACCGCACTTCAGACA 60.281 61.111 0.00 0.00 34.03 3.41
7757 16420 3.050275 GGCCACCGCACTTCAGAC 61.050 66.667 0.00 0.00 36.38 3.51
7758 16421 2.410322 AATGGCCACCGCACTTCAGA 62.410 55.000 8.16 0.00 36.38 3.27
7759 16422 1.926511 GAATGGCCACCGCACTTCAG 61.927 60.000 8.16 0.00 36.38 3.02
7760 16423 1.971167 GAATGGCCACCGCACTTCA 60.971 57.895 8.16 0.00 36.38 3.02
7761 16424 1.648467 GAGAATGGCCACCGCACTTC 61.648 60.000 8.16 7.05 36.38 3.01
7762 16425 1.675641 GAGAATGGCCACCGCACTT 60.676 57.895 8.16 0.00 36.38 3.16
7763 16426 2.045926 GAGAATGGCCACCGCACT 60.046 61.111 8.16 2.76 36.38 4.40
7764 16427 1.750399 ATGAGAATGGCCACCGCAC 60.750 57.895 8.16 0.00 36.38 5.34
7765 16428 1.750018 CATGAGAATGGCCACCGCA 60.750 57.895 8.16 12.09 36.38 5.69
7766 16429 0.463654 TACATGAGAATGGCCACCGC 60.464 55.000 8.16 5.56 0.00 5.68
7767 16430 2.036958 TTACATGAGAATGGCCACCG 57.963 50.000 8.16 0.00 0.00 4.94
7768 16431 4.718961 ACTATTACATGAGAATGGCCACC 58.281 43.478 8.16 2.43 0.00 4.61
7769 16432 7.661437 TGATTACTATTACATGAGAATGGCCAC 59.339 37.037 8.16 0.00 0.00 5.01
7770 16433 7.744733 TGATTACTATTACATGAGAATGGCCA 58.255 34.615 8.56 8.56 0.00 5.36
7771 16434 8.507249 GTTGATTACTATTACATGAGAATGGCC 58.493 37.037 0.00 0.00 0.00 5.36
7772 16435 9.277783 AGTTGATTACTATTACATGAGAATGGC 57.722 33.333 0.00 0.00 34.56 4.40
7782 16445 9.990360 TGTCTGAACAAGTTGATTACTATTACA 57.010 29.630 10.54 0.00 35.54 2.41
7787 16450 9.990360 TGTTATGTCTGAACAAGTTGATTACTA 57.010 29.630 10.54 0.00 39.30 1.82
7788 16451 8.902540 TGTTATGTCTGAACAAGTTGATTACT 57.097 30.769 10.54 0.00 39.30 2.24
7798 16461 3.153919 GGCCCTTGTTATGTCTGAACAA 58.846 45.455 0.00 1.43 42.88 2.83
7799 16462 2.107378 TGGCCCTTGTTATGTCTGAACA 59.893 45.455 0.00 0.00 40.38 3.18
7800 16463 2.790433 TGGCCCTTGTTATGTCTGAAC 58.210 47.619 0.00 0.00 0.00 3.18
7801 16464 3.737559 ATGGCCCTTGTTATGTCTGAA 57.262 42.857 0.00 0.00 0.00 3.02
7802 16465 3.737559 AATGGCCCTTGTTATGTCTGA 57.262 42.857 0.00 0.00 0.00 3.27
7803 16466 3.119029 CCAAATGGCCCTTGTTATGTCTG 60.119 47.826 0.00 0.00 0.00 3.51
7804 16467 3.099141 CCAAATGGCCCTTGTTATGTCT 58.901 45.455 0.00 0.00 0.00 3.41
7805 16468 3.525268 CCAAATGGCCCTTGTTATGTC 57.475 47.619 0.00 0.00 0.00 3.06
7851 16514 9.074443 CGTCTTTCTTACCTTTTCTCATACTAC 57.926 37.037 0.00 0.00 0.00 2.73
7852 16515 8.800332 ACGTCTTTCTTACCTTTTCTCATACTA 58.200 33.333 0.00 0.00 0.00 1.82
7853 16516 7.668492 ACGTCTTTCTTACCTTTTCTCATACT 58.332 34.615 0.00 0.00 0.00 2.12
7854 16517 7.886405 ACGTCTTTCTTACCTTTTCTCATAC 57.114 36.000 0.00 0.00 0.00 2.39
7855 16518 9.017509 TCTACGTCTTTCTTACCTTTTCTCATA 57.982 33.333 0.00 0.00 0.00 2.15
7856 16519 7.813627 GTCTACGTCTTTCTTACCTTTTCTCAT 59.186 37.037 0.00 0.00 0.00 2.90
7857 16520 7.014038 AGTCTACGTCTTTCTTACCTTTTCTCA 59.986 37.037 0.00 0.00 0.00 3.27
7858 16521 7.326547 CAGTCTACGTCTTTCTTACCTTTTCTC 59.673 40.741 0.00 0.00 0.00 2.87
7859 16522 7.014038 TCAGTCTACGTCTTTCTTACCTTTTCT 59.986 37.037 0.00 0.00 0.00 2.52
7860 16523 7.144000 TCAGTCTACGTCTTTCTTACCTTTTC 58.856 38.462 0.00 0.00 0.00 2.29
7861 16524 7.047460 TCAGTCTACGTCTTTCTTACCTTTT 57.953 36.000 0.00 0.00 0.00 2.27
7862 16525 6.645790 TCAGTCTACGTCTTTCTTACCTTT 57.354 37.500 0.00 0.00 0.00 3.11
7863 16526 6.837471 ATCAGTCTACGTCTTTCTTACCTT 57.163 37.500 0.00 0.00 0.00 3.50
7864 16527 7.994334 AGATATCAGTCTACGTCTTTCTTACCT 59.006 37.037 5.32 0.00 0.00 3.08
7865 16528 8.156994 AGATATCAGTCTACGTCTTTCTTACC 57.843 38.462 5.32 0.00 0.00 2.85
7869 16532 8.842280 CCTTAAGATATCAGTCTACGTCTTTCT 58.158 37.037 3.36 0.00 0.00 2.52
7870 16533 7.592164 GCCTTAAGATATCAGTCTACGTCTTTC 59.408 40.741 3.36 0.00 0.00 2.62
7871 16534 7.068348 TGCCTTAAGATATCAGTCTACGTCTTT 59.932 37.037 3.36 0.00 0.00 2.52
7872 16535 6.546403 TGCCTTAAGATATCAGTCTACGTCTT 59.454 38.462 3.36 0.00 0.00 3.01
7873 16536 6.062749 TGCCTTAAGATATCAGTCTACGTCT 58.937 40.000 3.36 0.00 0.00 4.18
7874 16537 6.315091 TGCCTTAAGATATCAGTCTACGTC 57.685 41.667 3.36 0.00 0.00 4.34
7875 16538 6.710597 TTGCCTTAAGATATCAGTCTACGT 57.289 37.500 3.36 0.00 0.00 3.57
7876 16539 8.085296 AGATTTGCCTTAAGATATCAGTCTACG 58.915 37.037 3.36 0.00 0.00 3.51
7877 16540 9.771534 AAGATTTGCCTTAAGATATCAGTCTAC 57.228 33.333 3.36 0.00 0.00 2.59
7878 16541 9.988815 GAAGATTTGCCTTAAGATATCAGTCTA 57.011 33.333 3.36 0.00 0.00 2.59
7879 16542 7.936301 GGAAGATTTGCCTTAAGATATCAGTCT 59.064 37.037 3.36 2.34 0.00 3.24
7880 16543 7.936301 AGGAAGATTTGCCTTAAGATATCAGTC 59.064 37.037 3.36 3.63 0.00 3.51
7881 16544 7.810260 AGGAAGATTTGCCTTAAGATATCAGT 58.190 34.615 3.36 0.00 0.00 3.41
7882 16545 9.784531 TTAGGAAGATTTGCCTTAAGATATCAG 57.215 33.333 3.36 0.00 35.73 2.90
7883 16546 9.784531 CTTAGGAAGATTTGCCTTAAGATATCA 57.215 33.333 3.36 0.00 35.73 2.15
7900 16563 5.249393 AGTTTGAAGGCTGATCTTAGGAAGA 59.751 40.000 0.00 0.00 42.69 2.87
7901 16564 5.495640 AGTTTGAAGGCTGATCTTAGGAAG 58.504 41.667 0.00 0.00 0.00 3.46
7902 16565 5.491982 GAGTTTGAAGGCTGATCTTAGGAA 58.508 41.667 0.00 0.00 0.00 3.36
7903 16566 4.080863 GGAGTTTGAAGGCTGATCTTAGGA 60.081 45.833 0.00 0.00 0.00 2.94
7904 16567 4.195416 GGAGTTTGAAGGCTGATCTTAGG 58.805 47.826 0.00 0.00 0.00 2.69
7905 16568 4.836825 TGGAGTTTGAAGGCTGATCTTAG 58.163 43.478 0.00 0.00 0.00 2.18
7906 16569 4.287067 ACTGGAGTTTGAAGGCTGATCTTA 59.713 41.667 0.00 0.00 0.00 2.10
7907 16570 3.073650 ACTGGAGTTTGAAGGCTGATCTT 59.926 43.478 0.00 0.00 0.00 2.40
7908 16571 2.641815 ACTGGAGTTTGAAGGCTGATCT 59.358 45.455 0.00 0.00 0.00 2.75
7909 16572 3.064900 ACTGGAGTTTGAAGGCTGATC 57.935 47.619 0.00 0.00 0.00 2.92
7910 16573 3.584848 ACTACTGGAGTTTGAAGGCTGAT 59.415 43.478 0.00 0.00 33.13 2.90
7911 16574 2.972713 ACTACTGGAGTTTGAAGGCTGA 59.027 45.455 0.00 0.00 33.13 4.26
7912 16575 3.070018 CACTACTGGAGTTTGAAGGCTG 58.930 50.000 0.00 0.00 35.64 4.85
7913 16576 2.039084 CCACTACTGGAGTTTGAAGGCT 59.961 50.000 0.00 0.00 40.55 4.58
7914 16577 2.224548 ACCACTACTGGAGTTTGAAGGC 60.225 50.000 0.00 0.00 40.55 4.35
7915 16578 3.771577 ACCACTACTGGAGTTTGAAGG 57.228 47.619 0.00 0.00 40.55 3.46
7916 16579 6.540914 TGTTTTACCACTACTGGAGTTTGAAG 59.459 38.462 0.00 0.00 40.55 3.02
7917 16580 6.416415 TGTTTTACCACTACTGGAGTTTGAA 58.584 36.000 0.00 0.00 40.55 2.69
7918 16581 5.991861 TGTTTTACCACTACTGGAGTTTGA 58.008 37.500 0.00 0.00 40.55 2.69
7919 16582 6.053005 TCTGTTTTACCACTACTGGAGTTTG 58.947 40.000 0.00 0.00 40.55 2.93
7920 16583 6.126854 ACTCTGTTTTACCACTACTGGAGTTT 60.127 38.462 0.00 0.00 40.55 2.66
7921 16584 5.365895 ACTCTGTTTTACCACTACTGGAGTT 59.634 40.000 0.00 0.00 40.55 3.01
7922 16585 4.900054 ACTCTGTTTTACCACTACTGGAGT 59.100 41.667 0.00 0.00 40.55 3.85
7923 16586 5.010719 TGACTCTGTTTTACCACTACTGGAG 59.989 44.000 0.00 0.00 40.55 3.86
7924 16587 4.897076 TGACTCTGTTTTACCACTACTGGA 59.103 41.667 0.00 0.00 40.55 3.86
7925 16588 5.209818 TGACTCTGTTTTACCACTACTGG 57.790 43.478 0.00 0.00 44.26 4.00
7926 16589 6.692486 AGATGACTCTGTTTTACCACTACTG 58.308 40.000 0.00 0.00 0.00 2.74
7927 16590 6.919775 AGATGACTCTGTTTTACCACTACT 57.080 37.500 0.00 0.00 0.00 2.57
7928 16591 7.873505 AGAAAGATGACTCTGTTTTACCACTAC 59.126 37.037 0.00 0.00 0.00 2.73
7929 16592 7.963532 AGAAAGATGACTCTGTTTTACCACTA 58.036 34.615 0.00 0.00 0.00 2.74
7930 16593 6.831976 AGAAAGATGACTCTGTTTTACCACT 58.168 36.000 0.00 0.00 0.00 4.00
7931 16594 7.497925 AAGAAAGATGACTCTGTTTTACCAC 57.502 36.000 0.00 0.00 0.00 4.16
7932 16595 9.621629 TTAAAGAAAGATGACTCTGTTTTACCA 57.378 29.630 0.00 0.00 0.00 3.25
7936 16599 9.971922 CCAATTAAAGAAAGATGACTCTGTTTT 57.028 29.630 0.00 0.00 0.00 2.43
7937 16600 8.084684 GCCAATTAAAGAAAGATGACTCTGTTT 58.915 33.333 0.00 0.00 0.00 2.83
7938 16601 7.573843 CGCCAATTAAAGAAAGATGACTCTGTT 60.574 37.037 0.00 0.00 0.00 3.16
7939 16602 6.128172 CGCCAATTAAAGAAAGATGACTCTGT 60.128 38.462 0.00 0.00 0.00 3.41
7940 16603 6.128172 ACGCCAATTAAAGAAAGATGACTCTG 60.128 38.462 0.00 0.00 0.00 3.35
7941 16604 5.940470 ACGCCAATTAAAGAAAGATGACTCT 59.060 36.000 0.00 0.00 0.00 3.24
7942 16605 6.024049 CACGCCAATTAAAGAAAGATGACTC 58.976 40.000 0.00 0.00 0.00 3.36
7943 16606 5.473504 ACACGCCAATTAAAGAAAGATGACT 59.526 36.000 0.00 0.00 0.00 3.41
7944 16607 5.699839 ACACGCCAATTAAAGAAAGATGAC 58.300 37.500 0.00 0.00 0.00 3.06
7945 16608 5.957842 ACACGCCAATTAAAGAAAGATGA 57.042 34.783 0.00 0.00 0.00 2.92
7946 16609 6.148948 TCAACACGCCAATTAAAGAAAGATG 58.851 36.000 0.00 0.00 0.00 2.90
7947 16610 6.325919 TCAACACGCCAATTAAAGAAAGAT 57.674 33.333 0.00 0.00 0.00 2.40
7948 16611 5.759506 TCAACACGCCAATTAAAGAAAGA 57.240 34.783 0.00 0.00 0.00 2.52
7949 16612 6.128849 CCAATCAACACGCCAATTAAAGAAAG 60.129 38.462 0.00 0.00 0.00 2.62
7950 16613 5.694006 CCAATCAACACGCCAATTAAAGAAA 59.306 36.000 0.00 0.00 0.00 2.52
7951 16614 5.221342 ACCAATCAACACGCCAATTAAAGAA 60.221 36.000 0.00 0.00 0.00 2.52
7952 16615 4.279671 ACCAATCAACACGCCAATTAAAGA 59.720 37.500 0.00 0.00 0.00 2.52
7953 16616 4.555262 ACCAATCAACACGCCAATTAAAG 58.445 39.130 0.00 0.00 0.00 1.85
7954 16617 4.592485 ACCAATCAACACGCCAATTAAA 57.408 36.364 0.00 0.00 0.00 1.52
7955 16618 4.302455 CAACCAATCAACACGCCAATTAA 58.698 39.130 0.00 0.00 0.00 1.40
7956 16619 3.305676 CCAACCAATCAACACGCCAATTA 60.306 43.478 0.00 0.00 0.00 1.40
7957 16620 2.547642 CCAACCAATCAACACGCCAATT 60.548 45.455 0.00 0.00 0.00 2.32
7958 16621 1.000731 CCAACCAATCAACACGCCAAT 59.999 47.619 0.00 0.00 0.00 3.16
7959 16622 0.387202 CCAACCAATCAACACGCCAA 59.613 50.000 0.00 0.00 0.00 4.52
7960 16623 0.466372 TCCAACCAATCAACACGCCA 60.466 50.000 0.00 0.00 0.00 5.69
7961 16624 0.240945 CTCCAACCAATCAACACGCC 59.759 55.000 0.00 0.00 0.00 5.68
7962 16625 1.069227 GTCTCCAACCAATCAACACGC 60.069 52.381 0.00 0.00 0.00 5.34
7963 16626 2.217750 TGTCTCCAACCAATCAACACG 58.782 47.619 0.00 0.00 0.00 4.49
7964 16627 3.882888 TCTTGTCTCCAACCAATCAACAC 59.117 43.478 0.00 0.00 0.00 3.32
7965 16628 4.136796 CTCTTGTCTCCAACCAATCAACA 58.863 43.478 0.00 0.00 0.00 3.33
7966 16629 4.756084 CTCTTGTCTCCAACCAATCAAC 57.244 45.455 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.