Multiple sequence alignment - TraesCS6B01G069600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G069600 chr6B 100.000 4216 0 0 1 4216 46825794 46830009 0.000000e+00 7786
1 TraesCS6B01G069600 chr6B 92.654 1021 63 6 1839 2847 46879833 46880853 0.000000e+00 1459
2 TraesCS6B01G069600 chr6B 87.733 750 82 7 1041 1790 46879087 46879826 0.000000e+00 867
3 TraesCS6B01G069600 chr6B 87.708 480 37 9 2885 3362 46880856 46881315 1.330000e-149 540
4 TraesCS6B01G069600 chrUn 90.440 3023 210 37 636 3652 95992359 95995308 0.000000e+00 3908
5 TraesCS6B01G069600 chrUn 91.829 2056 151 9 1021 3074 95826282 95828322 0.000000e+00 2850
6 TraesCS6B01G069600 chrUn 89.459 370 26 9 3854 4216 95995311 95995674 4.970000e-124 455
7 TraesCS6B01G069600 chrUn 85.000 160 20 4 3653 3812 89020874 89020719 4.360000e-35 159
8 TraesCS6B01G069600 chr6A 92.608 2381 166 8 985 3360 26969887 26972262 0.000000e+00 3413
9 TraesCS6B01G069600 chr1B 88.356 146 14 3 3653 3798 32368284 32368142 5.600000e-39 172
10 TraesCS6B01G069600 chr1B 85.897 156 16 5 3660 3815 6514104 6513955 1.210000e-35 161
11 TraesCS6B01G069600 chr3D 85.093 161 18 6 3653 3812 19775309 19775464 4.360000e-35 159
12 TraesCS6B01G069600 chr3D 85.000 160 20 4 3653 3812 325025919 325026074 4.360000e-35 159
13 TraesCS6B01G069600 chr2D 84.663 163 21 4 3653 3814 609284237 609284396 4.360000e-35 159
14 TraesCS6B01G069600 chr1D 84.756 164 19 5 3651 3812 434242136 434241977 4.360000e-35 159
15 TraesCS6B01G069600 chr4A 85.256 156 19 4 3643 3798 737573765 737573614 1.570000e-34 158
16 TraesCS6B01G069600 chr7D 84.472 161 21 4 3652 3812 90043047 90043203 5.640000e-34 156


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G069600 chr6B 46825794 46830009 4215 False 7786.000000 7786 100.0000 1 4216 1 chr6B.!!$F1 4215
1 TraesCS6B01G069600 chr6B 46879087 46881315 2228 False 955.333333 1459 89.3650 1041 3362 3 chr6B.!!$F2 2321
2 TraesCS6B01G069600 chrUn 95826282 95828322 2040 False 2850.000000 2850 91.8290 1021 3074 1 chrUn.!!$F1 2053
3 TraesCS6B01G069600 chrUn 95992359 95995674 3315 False 2181.500000 3908 89.9495 636 4216 2 chrUn.!!$F2 3580
4 TraesCS6B01G069600 chr6A 26969887 26972262 2375 False 3413.000000 3413 92.6080 985 3360 1 chr6A.!!$F1 2375

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
579 580 0.035915 AAAAGAAGCTCGGGCCTCTC 60.036 55.0 9.28 0.65 38.19 3.20 F
1596 1600 0.044397 AGAGGGAGGGGTTACTTCCC 59.956 60.0 6.44 6.44 46.31 3.97 F
2430 2438 0.321919 GCTCTGTGCCATGGAACTCA 60.322 55.0 23.90 9.13 35.15 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2234 2238 0.390340 GTCTGAGCATGAACGCAGGA 60.390 55.0 0.00 0.00 37.96 3.86 R
2713 2729 1.259609 CACACCATGGCATCTGGTTT 58.740 50.0 13.04 1.54 44.67 3.27 R
3742 3760 0.039437 TAGCGTGCTATTAGCGAGGC 60.039 55.0 17.41 17.41 46.26 4.70 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.344743 GATGTGGGACTAGAAACATCTCA 57.655 43.478 17.01 1.55 43.54 3.27
23 24 4.808414 TGTGGGACTAGAAACATCTCAG 57.192 45.455 0.00 0.00 0.00 3.35
24 25 4.160329 TGTGGGACTAGAAACATCTCAGT 58.840 43.478 0.00 0.00 0.00 3.41
25 26 4.021104 TGTGGGACTAGAAACATCTCAGTG 60.021 45.833 0.00 0.00 0.00 3.66
26 27 4.021016 GTGGGACTAGAAACATCTCAGTGT 60.021 45.833 0.00 0.00 0.00 3.55
27 28 5.185249 GTGGGACTAGAAACATCTCAGTGTA 59.815 44.000 0.00 0.00 0.00 2.90
28 29 5.778241 TGGGACTAGAAACATCTCAGTGTAA 59.222 40.000 0.00 0.00 0.00 2.41
29 30 6.440647 TGGGACTAGAAACATCTCAGTGTAAT 59.559 38.462 0.00 0.00 0.00 1.89
30 31 6.758886 GGGACTAGAAACATCTCAGTGTAATG 59.241 42.308 0.00 6.11 0.00 1.90
31 32 6.758886 GGACTAGAAACATCTCAGTGTAATGG 59.241 42.308 0.00 0.00 0.00 3.16
32 33 7.246171 ACTAGAAACATCTCAGTGTAATGGT 57.754 36.000 0.00 3.24 0.00 3.55
33 34 8.362464 ACTAGAAACATCTCAGTGTAATGGTA 57.638 34.615 0.00 0.19 0.00 3.25
34 35 8.812972 ACTAGAAACATCTCAGTGTAATGGTAA 58.187 33.333 0.00 0.00 0.00 2.85
35 36 9.653287 CTAGAAACATCTCAGTGTAATGGTAAA 57.347 33.333 10.73 0.00 0.00 2.01
36 37 8.324163 AGAAACATCTCAGTGTAATGGTAAAC 57.676 34.615 10.73 2.80 0.00 2.01
37 38 7.390718 AGAAACATCTCAGTGTAATGGTAAACC 59.609 37.037 10.73 0.00 0.00 3.27
50 51 3.958018 TGGTAAACCATATTTGACGCCT 58.042 40.909 0.00 0.00 42.01 5.52
51 52 3.692101 TGGTAAACCATATTTGACGCCTG 59.308 43.478 0.00 0.00 42.01 4.85
52 53 3.066203 GGTAAACCATATTTGACGCCTGG 59.934 47.826 0.00 0.00 35.64 4.45
53 54 2.799126 AACCATATTTGACGCCTGGA 57.201 45.000 0.00 0.00 0.00 3.86
54 55 2.332063 ACCATATTTGACGCCTGGAG 57.668 50.000 0.00 0.00 0.00 3.86
55 56 1.837439 ACCATATTTGACGCCTGGAGA 59.163 47.619 3.87 0.00 0.00 3.71
56 57 2.238646 ACCATATTTGACGCCTGGAGAA 59.761 45.455 3.87 0.00 0.00 2.87
57 58 3.278574 CCATATTTGACGCCTGGAGAAA 58.721 45.455 3.87 0.00 0.00 2.52
58 59 3.065371 CCATATTTGACGCCTGGAGAAAC 59.935 47.826 3.87 0.00 0.00 2.78
59 60 2.270352 ATTTGACGCCTGGAGAAACA 57.730 45.000 3.87 0.00 0.00 2.83
60 61 1.305201 TTTGACGCCTGGAGAAACAC 58.695 50.000 3.87 0.00 0.00 3.32
61 62 0.878523 TTGACGCCTGGAGAAACACG 60.879 55.000 3.87 0.00 0.00 4.49
62 63 2.665185 ACGCCTGGAGAAACACGC 60.665 61.111 3.87 0.00 0.00 5.34
63 64 2.664851 CGCCTGGAGAAACACGCA 60.665 61.111 0.00 0.00 0.00 5.24
64 65 2.671177 CGCCTGGAGAAACACGCAG 61.671 63.158 0.00 0.00 0.00 5.18
65 66 2.328099 GCCTGGAGAAACACGCAGG 61.328 63.158 0.00 0.00 0.00 4.85
66 67 1.071471 CCTGGAGAAACACGCAGGT 59.929 57.895 0.00 0.00 0.00 4.00
78 79 4.598257 GCAGGTGTATGCGTGAGT 57.402 55.556 0.00 0.00 36.28 3.41
79 80 2.081526 GCAGGTGTATGCGTGAGTG 58.918 57.895 0.00 0.00 36.28 3.51
80 81 1.361668 GCAGGTGTATGCGTGAGTGG 61.362 60.000 0.00 0.00 36.28 4.00
81 82 0.740868 CAGGTGTATGCGTGAGTGGG 60.741 60.000 0.00 0.00 0.00 4.61
82 83 2.106683 GGTGTATGCGTGAGTGGGC 61.107 63.158 0.00 0.00 0.00 5.36
83 84 2.106683 GTGTATGCGTGAGTGGGCC 61.107 63.158 0.00 0.00 0.00 5.80
84 85 2.890474 GTATGCGTGAGTGGGCCG 60.890 66.667 0.00 0.00 0.00 6.13
85 86 3.071837 TATGCGTGAGTGGGCCGA 61.072 61.111 0.00 0.00 0.00 5.54
86 87 3.076258 TATGCGTGAGTGGGCCGAG 62.076 63.158 0.00 0.00 0.00 4.63
89 90 4.457496 CGTGAGTGGGCCGAGCAT 62.457 66.667 0.00 0.00 0.00 3.79
90 91 2.045926 GTGAGTGGGCCGAGCATT 60.046 61.111 0.00 0.00 0.00 3.56
91 92 1.675641 GTGAGTGGGCCGAGCATTT 60.676 57.895 0.00 0.00 0.00 2.32
92 93 0.392461 GTGAGTGGGCCGAGCATTTA 60.392 55.000 0.00 0.00 0.00 1.40
93 94 0.392461 TGAGTGGGCCGAGCATTTAC 60.392 55.000 0.00 0.00 0.00 2.01
94 95 0.392461 GAGTGGGCCGAGCATTTACA 60.392 55.000 0.00 0.00 0.00 2.41
95 96 0.392998 AGTGGGCCGAGCATTTACAG 60.393 55.000 0.00 0.00 0.00 2.74
96 97 0.676782 GTGGGCCGAGCATTTACAGT 60.677 55.000 0.00 0.00 0.00 3.55
97 98 0.037590 TGGGCCGAGCATTTACAGTT 59.962 50.000 0.00 0.00 0.00 3.16
98 99 1.173913 GGGCCGAGCATTTACAGTTT 58.826 50.000 0.00 0.00 0.00 2.66
99 100 1.544246 GGGCCGAGCATTTACAGTTTT 59.456 47.619 0.00 0.00 0.00 2.43
100 101 2.415491 GGGCCGAGCATTTACAGTTTTC 60.415 50.000 0.00 0.00 0.00 2.29
101 102 2.488153 GGCCGAGCATTTACAGTTTTCT 59.512 45.455 0.00 0.00 0.00 2.52
102 103 3.687698 GGCCGAGCATTTACAGTTTTCTA 59.312 43.478 0.00 0.00 0.00 2.10
103 104 4.335594 GGCCGAGCATTTACAGTTTTCTAT 59.664 41.667 0.00 0.00 0.00 1.98
104 105 5.526111 GGCCGAGCATTTACAGTTTTCTATA 59.474 40.000 0.00 0.00 0.00 1.31
105 106 6.204882 GGCCGAGCATTTACAGTTTTCTATAT 59.795 38.462 0.00 0.00 0.00 0.86
106 107 7.291567 GCCGAGCATTTACAGTTTTCTATATC 58.708 38.462 0.00 0.00 0.00 1.63
107 108 7.171678 GCCGAGCATTTACAGTTTTCTATATCT 59.828 37.037 0.00 0.00 0.00 1.98
108 109 9.046296 CCGAGCATTTACAGTTTTCTATATCTT 57.954 33.333 0.00 0.00 0.00 2.40
185 186 6.718522 TTTTTCCTTCCGGTTTTCTTATGT 57.281 33.333 0.00 0.00 0.00 2.29
186 187 5.952526 TTTCCTTCCGGTTTTCTTATGTC 57.047 39.130 0.00 0.00 0.00 3.06
187 188 4.627284 TCCTTCCGGTTTTCTTATGTCA 57.373 40.909 0.00 0.00 0.00 3.58
188 189 4.320870 TCCTTCCGGTTTTCTTATGTCAC 58.679 43.478 0.00 0.00 0.00 3.67
189 190 4.041198 TCCTTCCGGTTTTCTTATGTCACT 59.959 41.667 0.00 0.00 0.00 3.41
190 191 4.760204 CCTTCCGGTTTTCTTATGTCACTT 59.240 41.667 0.00 0.00 0.00 3.16
191 192 5.935789 CCTTCCGGTTTTCTTATGTCACTTA 59.064 40.000 0.00 0.00 0.00 2.24
192 193 6.428771 CCTTCCGGTTTTCTTATGTCACTTAA 59.571 38.462 0.00 0.00 0.00 1.85
193 194 7.120726 CCTTCCGGTTTTCTTATGTCACTTAAT 59.879 37.037 0.00 0.00 0.00 1.40
194 195 7.989416 TCCGGTTTTCTTATGTCACTTAATT 57.011 32.000 0.00 0.00 0.00 1.40
195 196 9.504708 TTCCGGTTTTCTTATGTCACTTAATTA 57.495 29.630 0.00 0.00 0.00 1.40
196 197 9.504708 TCCGGTTTTCTTATGTCACTTAATTAA 57.495 29.630 0.00 0.00 0.00 1.40
316 317 9.283768 ACATGATAAACTTCTACAACACAATGA 57.716 29.630 0.00 0.00 0.00 2.57
319 320 9.337396 TGATAAACTTCTACAACACAATGAACT 57.663 29.630 0.00 0.00 0.00 3.01
323 324 9.705290 AAACTTCTACAACACAATGAACTTTTT 57.295 25.926 0.00 0.00 0.00 1.94
345 346 8.931905 TTTTTCAAATAAGCGATGAATTTTGC 57.068 26.923 0.00 0.00 33.45 3.68
346 347 5.930310 TCAAATAAGCGATGAATTTTGCG 57.070 34.783 0.00 0.00 0.00 4.85
347 348 4.797868 TCAAATAAGCGATGAATTTTGCGG 59.202 37.500 0.00 0.00 0.00 5.69
348 349 4.630894 AATAAGCGATGAATTTTGCGGA 57.369 36.364 0.00 0.00 0.00 5.54
349 350 2.262572 AAGCGATGAATTTTGCGGAC 57.737 45.000 0.00 0.00 0.00 4.79
350 351 1.164411 AGCGATGAATTTTGCGGACA 58.836 45.000 0.00 0.00 0.00 4.02
351 352 1.539388 AGCGATGAATTTTGCGGACAA 59.461 42.857 0.00 0.00 0.00 3.18
352 353 2.164219 AGCGATGAATTTTGCGGACAAT 59.836 40.909 0.00 0.00 35.21 2.71
353 354 2.923020 GCGATGAATTTTGCGGACAATT 59.077 40.909 0.26 0.26 35.21 2.32
354 355 3.000773 GCGATGAATTTTGCGGACAATTC 60.001 43.478 18.32 18.32 39.09 2.17
356 357 4.030529 CGATGAATTTTGCGGACAATTCAC 59.969 41.667 26.68 19.90 46.88 3.18
357 358 4.313277 TGAATTTTGCGGACAATTCACA 57.687 36.364 22.38 6.51 42.06 3.58
358 359 4.686972 TGAATTTTGCGGACAATTCACAA 58.313 34.783 22.38 5.33 42.06 3.33
359 360 5.111989 TGAATTTTGCGGACAATTCACAAA 58.888 33.333 22.38 5.02 42.06 2.83
360 361 5.006165 TGAATTTTGCGGACAATTCACAAAC 59.994 36.000 22.38 2.34 42.06 2.93
361 362 3.791973 TTTGCGGACAATTCACAAACT 57.208 38.095 0.00 0.00 35.21 2.66
362 363 2.772568 TGCGGACAATTCACAAACTG 57.227 45.000 0.00 0.00 0.00 3.16
363 364 2.020720 TGCGGACAATTCACAAACTGT 58.979 42.857 0.00 0.00 0.00 3.55
364 365 2.425312 TGCGGACAATTCACAAACTGTT 59.575 40.909 0.00 0.00 0.00 3.16
365 366 3.119316 TGCGGACAATTCACAAACTGTTT 60.119 39.130 0.00 0.00 0.00 2.83
366 367 3.862845 GCGGACAATTCACAAACTGTTTT 59.137 39.130 2.41 0.00 0.00 2.43
367 368 4.328712 GCGGACAATTCACAAACTGTTTTT 59.671 37.500 2.41 0.00 0.00 1.94
368 369 5.517054 GCGGACAATTCACAAACTGTTTTTA 59.483 36.000 2.41 0.00 0.00 1.52
369 370 6.035112 GCGGACAATTCACAAACTGTTTTTAA 59.965 34.615 2.41 0.00 0.00 1.52
370 371 7.387945 CGGACAATTCACAAACTGTTTTTAAC 58.612 34.615 2.41 0.00 0.00 2.01
371 372 7.062371 CGGACAATTCACAAACTGTTTTTAACA 59.938 33.333 2.41 0.00 39.52 2.41
372 373 8.713271 GGACAATTCACAAACTGTTTTTAACAA 58.287 29.630 2.41 0.00 41.61 2.83
395 396 8.711457 ACAATATTTTCCAAGAAAATGCTTTCG 58.289 29.630 20.28 8.97 44.83 3.46
396 397 8.924691 CAATATTTTCCAAGAAAATGCTTTCGA 58.075 29.630 20.28 4.31 44.83 3.71
397 398 9.487790 AATATTTTCCAAGAAAATGCTTTCGAA 57.512 25.926 20.28 0.00 44.83 3.71
398 399 7.967890 ATTTTCCAAGAAAATGCTTTCGAAT 57.032 28.000 13.10 0.00 44.83 3.34
399 400 7.784633 TTTTCCAAGAAAATGCTTTCGAATT 57.215 28.000 0.00 0.00 44.83 2.17
400 401 7.784633 TTTCCAAGAAAATGCTTTCGAATTT 57.215 28.000 0.00 0.00 44.83 1.82
401 402 7.784633 TTCCAAGAAAATGCTTTCGAATTTT 57.215 28.000 0.00 2.54 44.83 1.82
402 403 7.406799 TCCAAGAAAATGCTTTCGAATTTTC 57.593 32.000 19.76 19.76 46.23 2.29
460 461 8.802267 TCTAAGGTTATTGAATCAAACTTTGGG 58.198 33.333 0.00 0.00 0.00 4.12
461 462 5.793817 AGGTTATTGAATCAAACTTTGGGC 58.206 37.500 0.00 0.00 0.00 5.36
462 463 5.306678 AGGTTATTGAATCAAACTTTGGGCA 59.693 36.000 0.00 0.00 0.00 5.36
463 464 5.639082 GGTTATTGAATCAAACTTTGGGCAG 59.361 40.000 0.00 0.00 0.00 4.85
464 465 2.818130 TGAATCAAACTTTGGGCAGC 57.182 45.000 1.62 0.00 0.00 5.25
465 466 1.344114 TGAATCAAACTTTGGGCAGCC 59.656 47.619 1.26 1.26 0.00 4.85
466 467 0.686789 AATCAAACTTTGGGCAGCCC 59.313 50.000 25.54 25.54 45.71 5.19
481 482 3.513225 CCCATAAAGGCAGGCGTG 58.487 61.111 1.01 1.01 35.39 5.34
482 483 2.120909 CCCATAAAGGCAGGCGTGG 61.121 63.158 8.72 4.45 35.39 4.94
483 484 2.120909 CCATAAAGGCAGGCGTGGG 61.121 63.158 8.72 0.00 0.00 4.61
484 485 2.440247 ATAAAGGCAGGCGTGGGC 60.440 61.111 8.72 1.60 38.90 5.36
500 501 3.056328 GCGTTTGCCCACCTCCTC 61.056 66.667 0.00 0.00 33.98 3.71
501 502 2.359975 CGTTTGCCCACCTCCTCC 60.360 66.667 0.00 0.00 0.00 4.30
502 503 2.843545 GTTTGCCCACCTCCTCCA 59.156 61.111 0.00 0.00 0.00 3.86
503 504 1.384191 GTTTGCCCACCTCCTCCAT 59.616 57.895 0.00 0.00 0.00 3.41
504 505 0.681243 GTTTGCCCACCTCCTCCATC 60.681 60.000 0.00 0.00 0.00 3.51
505 506 1.863155 TTTGCCCACCTCCTCCATCC 61.863 60.000 0.00 0.00 0.00 3.51
506 507 2.692368 GCCCACCTCCTCCATCCA 60.692 66.667 0.00 0.00 0.00 3.41
507 508 2.308722 GCCCACCTCCTCCATCCAA 61.309 63.158 0.00 0.00 0.00 3.53
508 509 1.649271 GCCCACCTCCTCCATCCAAT 61.649 60.000 0.00 0.00 0.00 3.16
509 510 0.184451 CCCACCTCCTCCATCCAATG 59.816 60.000 0.00 0.00 0.00 2.82
510 511 0.466922 CCACCTCCTCCATCCAATGC 60.467 60.000 0.00 0.00 0.00 3.56
511 512 0.256752 CACCTCCTCCATCCAATGCA 59.743 55.000 0.00 0.00 0.00 3.96
512 513 1.002069 ACCTCCTCCATCCAATGCAA 58.998 50.000 0.00 0.00 0.00 4.08
513 514 1.064166 ACCTCCTCCATCCAATGCAAG 60.064 52.381 0.00 0.00 0.00 4.01
514 515 1.030457 CTCCTCCATCCAATGCAAGC 58.970 55.000 0.00 0.00 0.00 4.01
515 516 0.396139 TCCTCCATCCAATGCAAGCC 60.396 55.000 0.00 0.00 0.00 4.35
516 517 1.397390 CCTCCATCCAATGCAAGCCC 61.397 60.000 0.00 0.00 0.00 5.19
517 518 0.685131 CTCCATCCAATGCAAGCCCA 60.685 55.000 0.00 0.00 0.00 5.36
518 519 0.252148 TCCATCCAATGCAAGCCCAA 60.252 50.000 0.00 0.00 0.00 4.12
519 520 0.614294 CCATCCAATGCAAGCCCAAA 59.386 50.000 0.00 0.00 0.00 3.28
520 521 1.210967 CCATCCAATGCAAGCCCAAAT 59.789 47.619 0.00 0.00 0.00 2.32
521 522 2.356330 CCATCCAATGCAAGCCCAAATT 60.356 45.455 0.00 0.00 0.00 1.82
522 523 2.476126 TCCAATGCAAGCCCAAATTG 57.524 45.000 0.00 0.00 0.00 2.32
523 524 1.003349 TCCAATGCAAGCCCAAATTGG 59.997 47.619 4.74 4.74 46.91 3.16
536 537 4.707105 CCCAAATTGGCTGAAGAAAAAGT 58.293 39.130 6.48 0.00 35.79 2.66
537 538 5.125356 CCCAAATTGGCTGAAGAAAAAGTT 58.875 37.500 6.48 0.00 35.79 2.66
538 539 5.237127 CCCAAATTGGCTGAAGAAAAAGTTC 59.763 40.000 6.48 0.00 35.79 3.01
539 540 5.050837 CCAAATTGGCTGAAGAAAAAGTTCG 60.051 40.000 0.00 0.00 38.90 3.95
540 541 3.708563 TTGGCTGAAGAAAAAGTTCGG 57.291 42.857 0.00 0.00 38.90 4.30
542 543 2.051879 GCTGAAGAAAAAGTTCGGCC 57.948 50.000 5.50 0.00 46.46 6.13
543 544 1.335964 GCTGAAGAAAAAGTTCGGCCC 60.336 52.381 0.00 0.00 46.46 5.80
544 545 2.230660 CTGAAGAAAAAGTTCGGCCCT 58.769 47.619 0.00 0.00 38.90 5.19
545 546 2.226674 CTGAAGAAAAAGTTCGGCCCTC 59.773 50.000 0.00 0.00 38.90 4.30
546 547 2.158667 TGAAGAAAAAGTTCGGCCCTCT 60.159 45.455 0.00 0.00 38.90 3.69
547 548 2.658807 AGAAAAAGTTCGGCCCTCTT 57.341 45.000 0.00 0.00 38.90 2.85
548 549 2.505405 AGAAAAAGTTCGGCCCTCTTC 58.495 47.619 0.00 0.00 38.90 2.87
549 550 2.106684 AGAAAAAGTTCGGCCCTCTTCT 59.893 45.455 0.00 0.00 38.90 2.85
550 551 2.186532 AAAAGTTCGGCCCTCTTCTC 57.813 50.000 0.00 0.00 0.00 2.87
551 552 1.056660 AAAGTTCGGCCCTCTTCTCA 58.943 50.000 0.00 0.00 0.00 3.27
552 553 0.610687 AAGTTCGGCCCTCTTCTCAG 59.389 55.000 0.00 0.00 0.00 3.35
553 554 0.543174 AGTTCGGCCCTCTTCTCAGT 60.543 55.000 0.00 0.00 0.00 3.41
554 555 0.321996 GTTCGGCCCTCTTCTCAGTT 59.678 55.000 0.00 0.00 0.00 3.16
555 556 1.549170 GTTCGGCCCTCTTCTCAGTTA 59.451 52.381 0.00 0.00 0.00 2.24
556 557 1.933021 TCGGCCCTCTTCTCAGTTAA 58.067 50.000 0.00 0.00 0.00 2.01
557 558 2.253610 TCGGCCCTCTTCTCAGTTAAA 58.746 47.619 0.00 0.00 0.00 1.52
558 559 2.635915 TCGGCCCTCTTCTCAGTTAAAA 59.364 45.455 0.00 0.00 0.00 1.52
559 560 3.071892 TCGGCCCTCTTCTCAGTTAAAAA 59.928 43.478 0.00 0.00 0.00 1.94
577 578 2.948386 AAAAAGAAGCTCGGGCCTC 58.052 52.632 2.00 0.00 39.73 4.70
578 579 0.402121 AAAAAGAAGCTCGGGCCTCT 59.598 50.000 2.00 1.71 40.59 3.69
579 580 0.035915 AAAAGAAGCTCGGGCCTCTC 60.036 55.000 9.28 0.65 38.19 3.20
580 581 1.194781 AAAGAAGCTCGGGCCTCTCA 61.195 55.000 9.28 0.00 38.19 3.27
581 582 1.194781 AAGAAGCTCGGGCCTCTCAA 61.195 55.000 9.28 0.00 38.19 3.02
582 583 1.448717 GAAGCTCGGGCCTCTCAAC 60.449 63.158 2.00 0.00 39.73 3.18
583 584 3.302347 AAGCTCGGGCCTCTCAACG 62.302 63.158 2.00 0.00 39.73 4.10
584 585 4.821589 GCTCGGGCCTCTCAACGG 62.822 72.222 0.84 0.00 0.00 4.44
585 586 4.821589 CTCGGGCCTCTCAACGGC 62.822 72.222 0.84 0.00 46.83 5.68
602 603 3.454573 CGGCCCAGGCTACACGTA 61.455 66.667 8.89 0.00 41.60 3.57
603 604 2.792947 CGGCCCAGGCTACACGTAT 61.793 63.158 8.89 0.00 41.60 3.06
604 605 1.069258 GGCCCAGGCTACACGTATC 59.931 63.158 8.89 0.00 41.60 2.24
605 606 1.299926 GCCCAGGCTACACGTATCG 60.300 63.158 0.08 0.00 38.26 2.92
606 607 1.299926 CCCAGGCTACACGTATCGC 60.300 63.158 0.00 0.00 0.00 4.58
608 609 1.657487 CAGGCTACACGTATCGCGG 60.657 63.158 6.13 0.00 46.52 6.46
609 610 1.820906 AGGCTACACGTATCGCGGA 60.821 57.895 6.13 0.00 46.52 5.54
610 611 1.656569 GGCTACACGTATCGCGGAC 60.657 63.158 6.13 3.86 46.52 4.79
611 612 1.063006 GCTACACGTATCGCGGACA 59.937 57.895 6.13 0.00 46.52 4.02
612 613 0.523968 GCTACACGTATCGCGGACAA 60.524 55.000 6.13 0.00 46.52 3.18
613 614 1.898938 CTACACGTATCGCGGACAAA 58.101 50.000 6.13 0.00 46.52 2.83
614 615 2.252747 CTACACGTATCGCGGACAAAA 58.747 47.619 6.13 0.00 46.52 2.44
615 616 1.500108 ACACGTATCGCGGACAAAAA 58.500 45.000 6.13 0.00 46.52 1.94
616 617 2.070783 ACACGTATCGCGGACAAAAAT 58.929 42.857 6.13 0.00 46.52 1.82
617 618 2.159761 ACACGTATCGCGGACAAAAATG 60.160 45.455 6.13 0.00 46.52 2.32
618 619 1.201987 ACGTATCGCGGACAAAAATGC 60.202 47.619 6.13 0.00 46.52 3.56
624 625 2.140923 CGGACAAAAATGCGCAACC 58.859 52.632 17.11 8.56 0.00 3.77
625 626 0.318614 CGGACAAAAATGCGCAACCT 60.319 50.000 17.11 0.00 0.00 3.50
626 627 1.418373 GGACAAAAATGCGCAACCTC 58.582 50.000 17.11 3.16 0.00 3.85
627 628 1.052287 GACAAAAATGCGCAACCTCG 58.948 50.000 17.11 6.01 0.00 4.63
644 645 1.139308 CGCTCCTCTGTCTGCTCTG 59.861 63.158 0.00 0.00 0.00 3.35
694 695 0.963225 GTCCGCTTCTATCCTCCCTC 59.037 60.000 0.00 0.00 0.00 4.30
698 699 1.822114 GCTTCTATCCTCCCTCCCGC 61.822 65.000 0.00 0.00 0.00 6.13
720 721 4.452251 TTCCTCCGCCCGCTCCTA 62.452 66.667 0.00 0.00 0.00 2.94
721 722 3.751049 TTCCTCCGCCCGCTCCTAT 62.751 63.158 0.00 0.00 0.00 2.57
747 748 1.883084 GCGGTGCTCGTATGGAAGG 60.883 63.158 2.43 0.00 41.72 3.46
763 764 3.181406 TGGAAGGAAGAGAGAGGAAGGAA 60.181 47.826 0.00 0.00 0.00 3.36
764 765 4.037222 GGAAGGAAGAGAGAGGAAGGAAT 58.963 47.826 0.00 0.00 0.00 3.01
766 767 4.073425 AGGAAGAGAGAGGAAGGAATGT 57.927 45.455 0.00 0.00 0.00 2.71
768 769 5.594777 AGGAAGAGAGAGGAAGGAATGTAA 58.405 41.667 0.00 0.00 0.00 2.41
769 770 5.660864 AGGAAGAGAGAGGAAGGAATGTAAG 59.339 44.000 0.00 0.00 0.00 2.34
801 802 3.755628 GTCGTGCCCTGTCGCCTA 61.756 66.667 0.00 0.00 0.00 3.93
872 873 4.329545 GGCGAGTTGGGTCCAGCA 62.330 66.667 6.62 0.00 0.00 4.41
874 875 3.059982 CGAGTTGGGTCCAGCAGA 58.940 61.111 6.62 0.00 0.00 4.26
938 939 4.659172 CCTGGGCGCCTCAAACCA 62.659 66.667 28.56 13.75 0.00 3.67
939 940 2.361610 CTGGGCGCCTCAAACCAT 60.362 61.111 28.56 0.00 31.62 3.55
941 942 3.140814 GGGCGCCTCAAACCATCC 61.141 66.667 28.56 0.41 0.00 3.51
942 943 2.361104 GGCGCCTCAAACCATCCA 60.361 61.111 22.15 0.00 0.00 3.41
943 944 1.976474 GGCGCCTCAAACCATCCAA 60.976 57.895 22.15 0.00 0.00 3.53
944 945 1.508088 GCGCCTCAAACCATCCAAG 59.492 57.895 0.00 0.00 0.00 3.61
945 946 1.244019 GCGCCTCAAACCATCCAAGT 61.244 55.000 0.00 0.00 0.00 3.16
946 947 0.523072 CGCCTCAAACCATCCAAGTG 59.477 55.000 0.00 0.00 0.00 3.16
947 948 0.244721 GCCTCAAACCATCCAAGTGC 59.755 55.000 0.00 0.00 0.00 4.40
948 949 0.890683 CCTCAAACCATCCAAGTGCC 59.109 55.000 0.00 0.00 0.00 5.01
949 950 1.619654 CTCAAACCATCCAAGTGCCA 58.380 50.000 0.00 0.00 0.00 4.92
974 975 6.849151 AGTAAGTTGGGTTTAGAGGTCAAAT 58.151 36.000 0.00 0.00 0.00 2.32
976 977 6.650427 AAGTTGGGTTTAGAGGTCAAATTC 57.350 37.500 0.00 0.00 0.00 2.17
1071 1075 1.175983 TCACAAAATCCCACGCCACC 61.176 55.000 0.00 0.00 0.00 4.61
1128 1132 2.136878 CCAGCTCCTCACCGCCTAT 61.137 63.158 0.00 0.00 0.00 2.57
1188 1192 4.055227 GACCAAATCCCCCGCCCA 62.055 66.667 0.00 0.00 0.00 5.36
1275 1279 3.882326 CTCCTCCGGGCCATGCAT 61.882 66.667 4.39 0.00 0.00 3.96
1449 1453 0.529833 TGTATGCAAAATGTGGCCGG 59.470 50.000 0.00 0.00 0.00 6.13
1516 1520 1.939934 CTGTTTCTTGGAACGCACTCA 59.060 47.619 0.00 0.00 32.18 3.41
1572 1576 2.098117 AGCAGTTCAGCTGTTTGTTGAC 59.902 45.455 14.67 2.88 46.64 3.18
1576 1580 3.947196 AGTTCAGCTGTTTGTTGACATGA 59.053 39.130 14.67 0.00 35.64 3.07
1596 1600 0.044397 AGAGGGAGGGGTTACTTCCC 59.956 60.000 6.44 6.44 46.31 3.97
1746 1750 0.391661 CTGCCTACTCGCAATGTGGT 60.392 55.000 0.00 0.00 38.56 4.16
1956 1960 1.520120 CGCAGAGCATCGTGACCAT 60.520 57.895 0.00 0.00 42.67 3.55
1992 1996 5.452078 TTCATGGTTTGGTGATCAAGAAC 57.548 39.130 0.00 2.80 36.62 3.01
2014 2018 0.809385 CTTCGAAGGAGTCACGCCTA 59.191 55.000 17.70 0.00 31.02 3.93
2050 2054 8.437360 TCTAATTGCCATGTACACTAGATTTG 57.563 34.615 0.00 0.00 0.00 2.32
2107 2111 4.990426 GCTTTGATTCCTTGCTGCTTAAAA 59.010 37.500 0.00 0.00 0.00 1.52
2187 2191 3.276857 TGCCTTGAGATTCTTCAGATGC 58.723 45.455 0.00 0.00 0.00 3.91
2197 2201 3.062122 TCTTCAGATGCATGCAGTCAA 57.938 42.857 26.69 14.08 0.00 3.18
2307 2311 2.614057 CGGTTTAGTCATCCATTCTGGC 59.386 50.000 0.00 0.00 37.47 4.85
2365 2369 5.592054 TCTTCATGTATTCTAAGAGTGGCG 58.408 41.667 0.00 0.00 0.00 5.69
2368 2372 5.730550 TCATGTATTCTAAGAGTGGCGTTT 58.269 37.500 0.00 0.00 0.00 3.60
2383 2387 1.928503 GCGTTTTGGATGATGCAATGG 59.071 47.619 0.00 0.00 0.00 3.16
2421 2429 3.382865 CAGATAAGAGTAGCTCTGTGCCA 59.617 47.826 0.00 0.00 40.28 4.92
2430 2438 0.321919 GCTCTGTGCCATGGAACTCA 60.322 55.000 23.90 9.13 35.15 3.41
2497 2513 2.504585 AGCCTCTTCAATGAGATGCTGA 59.495 45.455 9.97 0.00 43.20 4.26
2572 2588 2.368548 AGTCATGCTGGTCTTGTACACA 59.631 45.455 0.00 0.00 0.00 3.72
2701 2717 7.370383 TGACAAAGCAAAAGATCTTATTGACC 58.630 34.615 23.21 12.88 0.00 4.02
2702 2718 6.381801 ACAAAGCAAAAGATCTTATTGACCG 58.618 36.000 23.21 14.65 0.00 4.79
2713 2729 7.450074 AGATCTTATTGACCGTATGCCATTTA 58.550 34.615 0.00 0.00 0.00 1.40
2795 2811 0.675083 CTTGCAAGTGATGTGGCCAA 59.325 50.000 18.65 0.00 0.00 4.52
2847 2863 2.621055 CTCCACCTATGTTCTCCTCTCG 59.379 54.545 0.00 0.00 0.00 4.04
3084 3100 3.942829 TCTAGAAACAAGTGGAGCCATG 58.057 45.455 0.00 0.00 0.00 3.66
3117 3133 8.965819 TGTGAGCAATTTGCCTCTTAATATTTA 58.034 29.630 17.51 0.00 46.52 1.40
3176 3192 3.133362 ACTCTTCGAGTTTACAACCACCA 59.867 43.478 0.00 0.00 40.28 4.17
3203 3221 9.241919 TCTGTTTATTCACACATGATATTTGGT 57.758 29.630 0.00 0.00 33.85 3.67
3209 3227 4.771577 TCACACATGATATTTGGTTTGGCT 59.228 37.500 0.00 0.00 0.00 4.75
3260 3278 1.077212 CAGCCCCTGTTGGAGATGG 60.077 63.158 0.00 0.00 35.39 3.51
3281 3299 3.495001 GGTTGAGCACACTTCTCTTGTAC 59.505 47.826 0.00 0.00 0.00 2.90
3303 3321 4.464951 ACATTCTGTGGATGCACATTCATT 59.535 37.500 21.05 2.94 34.25 2.57
3305 3323 5.471556 TTCTGTGGATGCACATTCATTTT 57.528 34.783 21.05 0.00 34.25 1.82
3333 3351 0.610687 GCTAGTGGCAGTGAAGACCT 59.389 55.000 4.76 0.00 41.35 3.85
3334 3352 1.825474 GCTAGTGGCAGTGAAGACCTA 59.175 52.381 4.76 0.00 41.35 3.08
3335 3353 2.417515 GCTAGTGGCAGTGAAGACCTAC 60.418 54.545 4.76 0.00 41.35 3.18
3336 3354 0.977395 AGTGGCAGTGAAGACCTACC 59.023 55.000 0.00 0.00 0.00 3.18
3337 3355 0.977395 GTGGCAGTGAAGACCTACCT 59.023 55.000 0.00 0.00 0.00 3.08
3366 3384 7.047891 TGTCAATATATGGAAAGGTGAGTGTC 58.952 38.462 0.00 0.00 0.00 3.67
3391 3409 4.162698 AGGGTGCAGTTACGATTACCATTA 59.837 41.667 0.00 0.00 0.00 1.90
3396 3414 7.178074 GTGCAGTTACGATTACCATTACTTTC 58.822 38.462 0.00 0.00 0.00 2.62
3423 3441 9.052759 TCTTGTTTTTGAGGATAGTACTTGTTC 57.947 33.333 0.00 0.00 0.00 3.18
3434 3452 9.529823 AGGATAGTACTTGTTCGGATTCATATA 57.470 33.333 0.00 0.00 0.00 0.86
3446 3464 9.382244 GTTCGGATTCATATAAATTAGTGTTGC 57.618 33.333 0.00 0.00 0.00 4.17
3455 3473 4.871933 AAATTAGTGTTGCAGGAAAGGG 57.128 40.909 0.00 0.00 0.00 3.95
3456 3474 3.806949 ATTAGTGTTGCAGGAAAGGGA 57.193 42.857 0.00 0.00 0.00 4.20
3479 3497 7.443879 GGGAAAAATTATTCTGAAGGTGCAAAA 59.556 33.333 0.00 0.00 0.00 2.44
3498 3516 9.636965 GTGCAAAACAGTGATTTCTTTTTATTC 57.363 29.630 0.00 0.00 0.00 1.75
3499 3517 9.376075 TGCAAAACAGTGATTTCTTTTTATTCA 57.624 25.926 0.00 0.00 0.00 2.57
3537 3555 5.491070 TGCAGATTAAGTGCTTCATGTACT 58.509 37.500 12.46 0.00 43.44 2.73
3543 3561 4.992381 AAGTGCTTCATGTACTTCGTTC 57.008 40.909 0.00 0.00 46.16 3.95
3562 3580 5.481824 TCGTTCTATAATGCAGATGGGATCT 59.518 40.000 0.00 0.00 41.15 2.75
3616 3634 5.255687 TGTGTGGATGTGATGCTAAATTCT 58.744 37.500 0.00 0.00 0.00 2.40
3652 3670 4.002982 TGGTGTAAGTGCATGTTCTGATC 58.997 43.478 0.00 0.00 0.00 2.92
3653 3671 4.002982 GGTGTAAGTGCATGTTCTGATCA 58.997 43.478 0.00 0.00 0.00 2.92
3654 3672 4.142816 GGTGTAAGTGCATGTTCTGATCAC 60.143 45.833 0.00 4.51 0.00 3.06
3655 3673 4.692625 GTGTAAGTGCATGTTCTGATCACT 59.307 41.667 0.00 0.00 39.42 3.41
3656 3674 4.692155 TGTAAGTGCATGTTCTGATCACTG 59.308 41.667 0.00 0.00 37.96 3.66
3657 3675 3.690475 AGTGCATGTTCTGATCACTGA 57.310 42.857 0.00 0.00 36.72 3.41
3658 3676 4.011966 AGTGCATGTTCTGATCACTGAA 57.988 40.909 0.00 0.00 36.72 3.02
3659 3677 4.392047 AGTGCATGTTCTGATCACTGAAA 58.608 39.130 0.00 0.00 36.72 2.69
3660 3678 4.823442 AGTGCATGTTCTGATCACTGAAAA 59.177 37.500 0.00 0.00 36.72 2.29
3661 3679 5.300034 AGTGCATGTTCTGATCACTGAAAAA 59.700 36.000 0.00 0.00 36.72 1.94
3679 3697 3.385079 AAAAGAACAGCGCGCTATAAC 57.615 42.857 36.02 23.53 0.00 1.89
3680 3698 0.921347 AAGAACAGCGCGCTATAACG 59.079 50.000 36.02 23.52 0.00 3.18
3691 3709 1.582502 CGCTATAACGCCGCTAATAGC 59.417 52.381 13.04 13.04 42.10 2.97
3692 3710 2.602878 GCTATAACGCCGCTAATAGCA 58.397 47.619 13.15 0.00 43.98 3.49
3693 3711 2.991190 GCTATAACGCCGCTAATAGCAA 59.009 45.455 13.15 0.00 43.98 3.91
3694 3712 3.617263 GCTATAACGCCGCTAATAGCAAT 59.383 43.478 13.15 0.00 43.98 3.56
3695 3713 4.492570 GCTATAACGCCGCTAATAGCAATG 60.493 45.833 13.15 3.30 43.98 2.82
3696 3714 0.307760 AACGCCGCTAATAGCAATGC 59.692 50.000 13.15 10.20 42.58 3.56
3697 3715 0.532862 ACGCCGCTAATAGCAATGCT 60.533 50.000 13.92 13.92 42.58 3.79
3698 3716 1.270094 ACGCCGCTAATAGCAATGCTA 60.270 47.619 17.97 17.97 45.55 3.49
3709 3727 2.905075 AGCAATGCTATAACGTGCTGA 58.095 42.857 5.69 0.00 43.66 4.26
3710 3728 2.868583 AGCAATGCTATAACGTGCTGAG 59.131 45.455 5.69 0.00 43.66 3.35
3711 3729 2.866156 GCAATGCTATAACGTGCTGAGA 59.134 45.455 0.00 0.00 32.43 3.27
3712 3730 3.309682 GCAATGCTATAACGTGCTGAGAA 59.690 43.478 0.00 0.00 32.43 2.87
3713 3731 4.024556 GCAATGCTATAACGTGCTGAGAAT 60.025 41.667 0.00 0.00 32.43 2.40
3714 3732 5.674008 CAATGCTATAACGTGCTGAGAATC 58.326 41.667 0.00 0.00 0.00 2.52
3734 3752 9.202273 GAGAATCATCTCGCTAAATAAATCAGT 57.798 33.333 0.00 0.00 42.54 3.41
3735 3753 8.986847 AGAATCATCTCGCTAAATAAATCAGTG 58.013 33.333 0.00 0.00 0.00 3.66
3736 3754 8.668510 AATCATCTCGCTAAATAAATCAGTGT 57.331 30.769 0.00 0.00 0.00 3.55
3737 3755 9.764363 AATCATCTCGCTAAATAAATCAGTGTA 57.236 29.630 0.00 0.00 0.00 2.90
3738 3756 8.575565 TCATCTCGCTAAATAAATCAGTGTAC 57.424 34.615 0.00 0.00 0.00 2.90
3739 3757 8.194769 TCATCTCGCTAAATAAATCAGTGTACA 58.805 33.333 0.00 0.00 0.00 2.90
3740 3758 8.817100 CATCTCGCTAAATAAATCAGTGTACAA 58.183 33.333 0.00 0.00 0.00 2.41
3741 3759 8.181487 TCTCGCTAAATAAATCAGTGTACAAC 57.819 34.615 0.00 0.00 0.00 3.32
3742 3760 6.985013 TCGCTAAATAAATCAGTGTACAACG 58.015 36.000 0.00 0.00 0.00 4.10
3743 3761 5.671140 CGCTAAATAAATCAGTGTACAACGC 59.329 40.000 0.00 0.00 0.00 4.84
3744 3762 5.963586 GCTAAATAAATCAGTGTACAACGCC 59.036 40.000 0.00 0.00 0.00 5.68
3745 3763 6.183360 GCTAAATAAATCAGTGTACAACGCCT 60.183 38.462 0.00 0.00 0.00 5.52
3746 3764 5.796350 AATAAATCAGTGTACAACGCCTC 57.204 39.130 0.00 0.00 0.00 4.70
3747 3765 1.710013 AATCAGTGTACAACGCCTCG 58.290 50.000 0.00 0.00 0.00 4.63
3748 3766 0.736325 ATCAGTGTACAACGCCTCGC 60.736 55.000 0.00 0.00 0.00 5.03
3749 3767 1.372997 CAGTGTACAACGCCTCGCT 60.373 57.895 0.00 0.00 0.00 4.93
3750 3768 0.109458 CAGTGTACAACGCCTCGCTA 60.109 55.000 0.00 0.00 0.00 4.26
3751 3769 0.599558 AGTGTACAACGCCTCGCTAA 59.400 50.000 0.00 0.00 0.00 3.09
3752 3770 1.203994 AGTGTACAACGCCTCGCTAAT 59.796 47.619 0.00 0.00 0.00 1.73
3753 3771 2.424601 AGTGTACAACGCCTCGCTAATA 59.575 45.455 0.00 0.00 0.00 0.98
3754 3772 2.787680 GTGTACAACGCCTCGCTAATAG 59.212 50.000 0.00 0.00 0.00 1.73
3755 3773 1.785430 GTACAACGCCTCGCTAATAGC 59.215 52.381 1.41 1.41 38.02 2.97
3756 3774 0.174845 ACAACGCCTCGCTAATAGCA 59.825 50.000 13.15 0.00 42.58 3.49
3757 3775 0.577269 CAACGCCTCGCTAATAGCAC 59.423 55.000 13.15 0.00 42.58 4.40
3758 3776 0.870307 AACGCCTCGCTAATAGCACG 60.870 55.000 13.15 11.80 42.58 5.34
3759 3777 2.649257 CGCCTCGCTAATAGCACGC 61.649 63.158 13.15 8.81 42.58 5.34
3760 3778 1.300233 GCCTCGCTAATAGCACGCT 60.300 57.895 13.15 0.00 42.58 5.07
3761 3779 0.039437 GCCTCGCTAATAGCACGCTA 60.039 55.000 13.15 0.39 42.58 4.26
3762 3780 1.402984 GCCTCGCTAATAGCACGCTAT 60.403 52.381 13.15 5.72 42.58 2.97
3763 3781 2.159421 GCCTCGCTAATAGCACGCTATA 60.159 50.000 13.15 1.16 42.58 1.31
3764 3782 3.686128 CCTCGCTAATAGCACGCTATAG 58.314 50.000 13.15 10.32 42.58 1.31
3765 3783 3.102276 CTCGCTAATAGCACGCTATAGC 58.898 50.000 15.09 15.09 42.58 2.97
3779 3797 4.740185 GCTATAGCGCGATATAACACAC 57.260 45.455 22.87 8.44 0.00 3.82
3780 3798 4.413087 GCTATAGCGCGATATAACACACT 58.587 43.478 22.87 3.34 0.00 3.55
3781 3799 5.566623 GCTATAGCGCGATATAACACACTA 58.433 41.667 22.87 5.49 0.00 2.74
3782 3800 6.025896 GCTATAGCGCGATATAACACACTAA 58.974 40.000 22.87 1.86 0.00 2.24
3783 3801 6.691818 GCTATAGCGCGATATAACACACTAAT 59.308 38.462 22.87 0.00 0.00 1.73
3784 3802 7.854422 GCTATAGCGCGATATAACACACTAATA 59.146 37.037 22.87 0.65 0.00 0.98
3785 3803 9.371333 CTATAGCGCGATATAACACACTAATAG 57.629 37.037 22.87 6.75 0.00 1.73
3786 3804 4.857588 AGCGCGATATAACACACTAATAGC 59.142 41.667 12.10 0.00 0.00 2.97
3787 3805 4.619760 GCGCGATATAACACACTAATAGCA 59.380 41.667 12.10 0.00 0.00 3.49
3788 3806 5.288712 GCGCGATATAACACACTAATAGCAT 59.711 40.000 12.10 0.00 0.00 3.79
3789 3807 6.471198 GCGCGATATAACACACTAATAGCATA 59.529 38.462 12.10 0.00 0.00 3.14
3790 3808 7.167635 GCGCGATATAACACACTAATAGCATAT 59.832 37.037 12.10 0.00 0.00 1.78
3791 3809 9.020813 CGCGATATAACACACTAATAGCATATT 57.979 33.333 0.00 0.00 0.00 1.28
3799 3817 8.980481 ACACACTAATAGCATATTTTAAGGCT 57.020 30.769 0.00 0.00 40.26 4.58
3800 3818 8.840321 ACACACTAATAGCATATTTTAAGGCTG 58.160 33.333 0.00 0.00 37.17 4.85
3801 3819 8.292448 CACACTAATAGCATATTTTAAGGCTGG 58.708 37.037 0.00 0.00 37.17 4.85
3802 3820 7.040409 ACACTAATAGCATATTTTAAGGCTGGC 60.040 37.037 0.00 0.00 37.17 4.85
3803 3821 7.004086 ACTAATAGCATATTTTAAGGCTGGCA 58.996 34.615 3.38 0.00 37.17 4.92
3804 3822 5.712152 ATAGCATATTTTAAGGCTGGCAC 57.288 39.130 3.38 0.00 37.17 5.01
3805 3823 3.635591 AGCATATTTTAAGGCTGGCACT 58.364 40.909 3.38 0.00 34.83 4.40
3806 3824 4.792068 AGCATATTTTAAGGCTGGCACTA 58.208 39.130 3.38 0.00 34.83 2.74
3807 3825 5.388654 AGCATATTTTAAGGCTGGCACTAT 58.611 37.500 3.38 0.00 34.83 2.12
3808 3826 6.542821 AGCATATTTTAAGGCTGGCACTATA 58.457 36.000 3.38 0.00 34.83 1.31
3809 3827 7.177878 AGCATATTTTAAGGCTGGCACTATAT 58.822 34.615 3.38 0.00 34.83 0.86
3810 3828 7.671398 AGCATATTTTAAGGCTGGCACTATATT 59.329 33.333 3.38 0.00 34.83 1.28
3811 3829 8.306761 GCATATTTTAAGGCTGGCACTATATTT 58.693 33.333 3.38 0.00 0.00 1.40
3815 3833 6.709018 TTAAGGCTGGCACTATATTTTTCC 57.291 37.500 3.38 0.00 0.00 3.13
3816 3834 4.526438 AGGCTGGCACTATATTTTTCCT 57.474 40.909 3.38 0.00 0.00 3.36
3817 3835 4.871822 AGGCTGGCACTATATTTTTCCTT 58.128 39.130 3.38 0.00 0.00 3.36
3818 3836 4.889995 AGGCTGGCACTATATTTTTCCTTC 59.110 41.667 3.38 0.00 0.00 3.46
3819 3837 4.889995 GGCTGGCACTATATTTTTCCTTCT 59.110 41.667 0.00 0.00 0.00 2.85
3820 3838 5.221126 GGCTGGCACTATATTTTTCCTTCTG 60.221 44.000 0.00 0.00 0.00 3.02
3821 3839 5.590259 GCTGGCACTATATTTTTCCTTCTGA 59.410 40.000 0.00 0.00 0.00 3.27
3822 3840 6.264067 GCTGGCACTATATTTTTCCTTCTGAT 59.736 38.462 0.00 0.00 0.00 2.90
3823 3841 7.572523 TGGCACTATATTTTTCCTTCTGATG 57.427 36.000 0.00 0.00 0.00 3.07
3824 3842 6.547141 TGGCACTATATTTTTCCTTCTGATGG 59.453 38.462 3.27 3.27 0.00 3.51
3825 3843 6.772716 GGCACTATATTTTTCCTTCTGATGGA 59.227 38.462 8.12 8.12 0.00 3.41
3826 3844 7.285401 GGCACTATATTTTTCCTTCTGATGGAA 59.715 37.037 18.13 18.13 41.33 3.53
3827 3845 8.854117 GCACTATATTTTTCCTTCTGATGGAAT 58.146 33.333 21.44 12.12 42.41 3.01
3832 3850 6.975196 TTTTTCCTTCTGATGGAATTGTGA 57.025 33.333 21.44 7.48 42.41 3.58
3833 3851 6.579666 TTTTCCTTCTGATGGAATTGTGAG 57.420 37.500 21.44 0.00 42.41 3.51
3834 3852 4.226427 TCCTTCTGATGGAATTGTGAGG 57.774 45.455 9.64 0.00 33.01 3.86
3835 3853 3.054139 TCCTTCTGATGGAATTGTGAGGG 60.054 47.826 9.64 0.00 33.01 4.30
3836 3854 3.308688 CCTTCTGATGGAATTGTGAGGGT 60.309 47.826 3.58 0.00 33.01 4.34
3837 3855 4.080356 CCTTCTGATGGAATTGTGAGGGTA 60.080 45.833 3.58 0.00 33.01 3.69
3838 3856 5.398353 CCTTCTGATGGAATTGTGAGGGTAT 60.398 44.000 3.58 0.00 33.01 2.73
3839 3857 5.039920 TCTGATGGAATTGTGAGGGTATG 57.960 43.478 0.00 0.00 0.00 2.39
3840 3858 4.139786 CTGATGGAATTGTGAGGGTATGG 58.860 47.826 0.00 0.00 0.00 2.74
3841 3859 3.785325 TGATGGAATTGTGAGGGTATGGA 59.215 43.478 0.00 0.00 0.00 3.41
3842 3860 3.644966 TGGAATTGTGAGGGTATGGAC 57.355 47.619 0.00 0.00 0.00 4.02
3843 3861 2.916269 TGGAATTGTGAGGGTATGGACA 59.084 45.455 0.00 0.00 0.00 4.02
3844 3862 3.332187 TGGAATTGTGAGGGTATGGACAA 59.668 43.478 0.00 0.00 33.09 3.18
3845 3863 3.694566 GGAATTGTGAGGGTATGGACAAC 59.305 47.826 0.00 0.00 31.41 3.32
3846 3864 2.871096 TTGTGAGGGTATGGACAACC 57.129 50.000 0.00 0.00 36.19 3.77
3878 3896 4.025040 TGGTTCTGCAGTGATGAAGAAT 57.975 40.909 14.67 0.00 36.02 2.40
3882 3900 2.745821 TCTGCAGTGATGAAGAATGTGC 59.254 45.455 14.67 0.00 0.00 4.57
4008 4026 6.680874 TCTGCTTAAAGTGACCGTTTAAAA 57.319 33.333 0.00 0.00 30.81 1.52
4009 4027 6.721321 TCTGCTTAAAGTGACCGTTTAAAAG 58.279 36.000 0.00 0.00 30.81 2.27
4010 4028 5.275494 TGCTTAAAGTGACCGTTTAAAAGC 58.725 37.500 0.00 0.00 30.81 3.51
4012 4030 5.744819 GCTTAAAGTGACCGTTTAAAAGCAA 59.255 36.000 0.00 0.00 30.81 3.91
4014 4032 3.982576 AGTGACCGTTTAAAAGCAAGG 57.017 42.857 0.00 0.00 0.00 3.61
4016 4034 3.949113 AGTGACCGTTTAAAAGCAAGGAA 59.051 39.130 0.00 0.00 0.00 3.36
4017 4035 4.039703 GTGACCGTTTAAAAGCAAGGAAC 58.960 43.478 0.00 0.00 0.00 3.62
4020 4038 3.049912 CCGTTTAAAAGCAAGGAACAGC 58.950 45.455 0.00 0.00 0.00 4.40
4022 4040 4.109050 CGTTTAAAAGCAAGGAACAGCAA 58.891 39.130 0.00 0.00 34.11 3.91
4023 4041 4.564769 CGTTTAAAAGCAAGGAACAGCAAA 59.435 37.500 0.00 0.00 34.11 3.68
4025 4043 2.896745 AAAGCAAGGAACAGCAAAGG 57.103 45.000 0.00 0.00 34.11 3.11
4026 4044 1.780503 AAGCAAGGAACAGCAAAGGT 58.219 45.000 0.00 0.00 34.11 3.50
4027 4045 2.656947 AGCAAGGAACAGCAAAGGTA 57.343 45.000 0.00 0.00 34.11 3.08
4028 4046 3.160679 AGCAAGGAACAGCAAAGGTAT 57.839 42.857 0.00 0.00 34.11 2.73
4029 4047 3.500343 AGCAAGGAACAGCAAAGGTATT 58.500 40.909 0.00 0.00 34.11 1.89
4030 4048 3.507622 AGCAAGGAACAGCAAAGGTATTC 59.492 43.478 0.00 0.00 34.11 1.75
4031 4049 3.367395 GCAAGGAACAGCAAAGGTATTCC 60.367 47.826 0.00 0.00 39.35 3.01
4032 4050 3.806949 AGGAACAGCAAAGGTATTCCA 57.193 42.857 8.71 0.00 41.15 3.53
4034 4052 2.164422 GGAACAGCAAAGGTATTCCAGC 59.836 50.000 1.71 0.00 38.96 4.85
4035 4053 2.887151 ACAGCAAAGGTATTCCAGCT 57.113 45.000 0.00 0.00 38.47 4.24
4063 4085 3.132646 AGAGAGACAATGCTAGCCAGAAG 59.867 47.826 13.29 0.13 0.00 2.85
4076 4098 7.056006 TGCTAGCCAGAAGATCATTATGAAAA 58.944 34.615 13.29 0.00 0.00 2.29
4107 4129 7.540055 GGTCTTTCAGCTTCATTCTATTTTGTG 59.460 37.037 0.00 0.00 0.00 3.33
4115 4137 8.680903 AGCTTCATTCTATTTTGTGAGGTATTG 58.319 33.333 0.00 0.00 0.00 1.90
4137 4159 3.063180 GCTGCTACTACATTGTGCTTCAG 59.937 47.826 0.00 2.25 0.00 3.02
4146 4168 5.117355 ACATTGTGCTTCAGATCTTGTTG 57.883 39.130 0.00 0.00 0.00 3.33
4200 4222 4.209538 TGTTATTCCATCCATCCAGCAAG 58.790 43.478 0.00 0.00 0.00 4.01
4201 4223 4.079844 TGTTATTCCATCCATCCAGCAAGA 60.080 41.667 0.00 0.00 0.00 3.02
4202 4224 2.425143 TTCCATCCATCCAGCAAGAC 57.575 50.000 0.00 0.00 0.00 3.01
4205 4227 1.676746 CATCCATCCAGCAAGACCAG 58.323 55.000 0.00 0.00 0.00 4.00
4212 4234 1.620819 TCCAGCAAGACCAGAGTTCTC 59.379 52.381 0.00 0.00 0.00 2.87
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.105146 ACTGAGATGTTTCTAGTCCCACATC 60.105 44.000 13.71 13.71 43.98 3.06
1 2 4.780021 ACTGAGATGTTTCTAGTCCCACAT 59.220 41.667 0.00 0.00 32.41 3.21
2 3 4.021104 CACTGAGATGTTTCTAGTCCCACA 60.021 45.833 0.00 0.00 30.30 4.17
3 4 4.021016 ACACTGAGATGTTTCTAGTCCCAC 60.021 45.833 0.00 0.00 30.30 4.61
4 5 4.160329 ACACTGAGATGTTTCTAGTCCCA 58.840 43.478 0.00 0.00 30.30 4.37
5 6 4.810191 ACACTGAGATGTTTCTAGTCCC 57.190 45.455 0.00 0.00 30.30 4.46
6 7 6.758886 CCATTACACTGAGATGTTTCTAGTCC 59.241 42.308 0.00 0.00 33.85 3.85
7 8 7.324178 ACCATTACACTGAGATGTTTCTAGTC 58.676 38.462 0.00 0.00 33.85 2.59
8 9 7.246171 ACCATTACACTGAGATGTTTCTAGT 57.754 36.000 0.00 0.00 33.85 2.57
9 10 9.653287 TTTACCATTACACTGAGATGTTTCTAG 57.347 33.333 0.00 0.00 33.85 2.43
10 11 9.431887 GTTTACCATTACACTGAGATGTTTCTA 57.568 33.333 0.00 0.00 33.85 2.10
11 12 7.390718 GGTTTACCATTACACTGAGATGTTTCT 59.609 37.037 0.00 0.00 33.22 2.52
12 13 7.174253 TGGTTTACCATTACACTGAGATGTTTC 59.826 37.037 0.00 0.00 42.01 2.78
13 14 7.001674 TGGTTTACCATTACACTGAGATGTTT 58.998 34.615 0.00 0.00 42.01 2.83
14 15 6.539173 TGGTTTACCATTACACTGAGATGTT 58.461 36.000 0.00 0.00 42.01 2.71
15 16 6.121776 TGGTTTACCATTACACTGAGATGT 57.878 37.500 0.00 0.00 42.01 3.06
30 31 3.066203 CCAGGCGTCAAATATGGTTTACC 59.934 47.826 0.00 0.00 0.00 2.85
31 32 3.942748 TCCAGGCGTCAAATATGGTTTAC 59.057 43.478 0.00 0.00 32.68 2.01
32 33 4.080807 TCTCCAGGCGTCAAATATGGTTTA 60.081 41.667 0.00 0.00 32.68 2.01
33 34 3.016736 CTCCAGGCGTCAAATATGGTTT 58.983 45.455 0.00 0.00 32.68 3.27
34 35 2.238646 TCTCCAGGCGTCAAATATGGTT 59.761 45.455 0.00 0.00 32.68 3.67
35 36 1.837439 TCTCCAGGCGTCAAATATGGT 59.163 47.619 0.00 0.00 32.68 3.55
36 37 2.620251 TCTCCAGGCGTCAAATATGG 57.380 50.000 0.00 0.00 0.00 2.74
37 38 3.689161 TGTTTCTCCAGGCGTCAAATATG 59.311 43.478 0.00 0.00 0.00 1.78
38 39 3.689649 GTGTTTCTCCAGGCGTCAAATAT 59.310 43.478 0.00 0.00 0.00 1.28
39 40 3.071479 GTGTTTCTCCAGGCGTCAAATA 58.929 45.455 0.00 0.00 0.00 1.40
40 41 1.880027 GTGTTTCTCCAGGCGTCAAAT 59.120 47.619 0.00 0.00 0.00 2.32
41 42 1.305201 GTGTTTCTCCAGGCGTCAAA 58.695 50.000 0.00 0.00 0.00 2.69
42 43 0.878523 CGTGTTTCTCCAGGCGTCAA 60.879 55.000 0.00 0.00 0.00 3.18
43 44 1.300620 CGTGTTTCTCCAGGCGTCA 60.301 57.895 0.00 0.00 0.00 4.35
44 45 2.668280 GCGTGTTTCTCCAGGCGTC 61.668 63.158 0.00 0.00 36.62 5.19
45 46 2.665185 GCGTGTTTCTCCAGGCGT 60.665 61.111 0.00 0.00 36.62 5.68
46 47 2.664851 TGCGTGTTTCTCCAGGCG 60.665 61.111 0.00 0.00 46.39 5.52
47 48 2.328099 CCTGCGTGTTTCTCCAGGC 61.328 63.158 0.00 0.00 44.34 4.85
48 49 3.972227 CCTGCGTGTTTCTCCAGG 58.028 61.111 0.00 0.00 38.93 4.45
49 50 2.238353 CACCTGCGTGTTTCTCCAG 58.762 57.895 0.00 0.00 35.10 3.86
50 51 4.454948 CACCTGCGTGTTTCTCCA 57.545 55.556 0.00 0.00 35.10 3.86
61 62 1.361668 CCACTCACGCATACACCTGC 61.362 60.000 0.00 0.00 38.81 4.85
62 63 0.740868 CCCACTCACGCATACACCTG 60.741 60.000 0.00 0.00 0.00 4.00
63 64 1.596934 CCCACTCACGCATACACCT 59.403 57.895 0.00 0.00 0.00 4.00
64 65 2.106683 GCCCACTCACGCATACACC 61.107 63.158 0.00 0.00 0.00 4.16
65 66 2.106683 GGCCCACTCACGCATACAC 61.107 63.158 0.00 0.00 0.00 2.90
66 67 2.267642 GGCCCACTCACGCATACA 59.732 61.111 0.00 0.00 0.00 2.29
67 68 2.890474 CGGCCCACTCACGCATAC 60.890 66.667 0.00 0.00 0.00 2.39
68 69 3.071837 TCGGCCCACTCACGCATA 61.072 61.111 0.00 0.00 0.00 3.14
69 70 4.457496 CTCGGCCCACTCACGCAT 62.457 66.667 0.00 0.00 0.00 4.73
72 73 3.958147 AATGCTCGGCCCACTCACG 62.958 63.158 0.00 0.00 0.00 4.35
73 74 0.392461 TAAATGCTCGGCCCACTCAC 60.392 55.000 0.00 0.00 0.00 3.51
74 75 0.392461 GTAAATGCTCGGCCCACTCA 60.392 55.000 0.00 0.00 0.00 3.41
75 76 0.392461 TGTAAATGCTCGGCCCACTC 60.392 55.000 0.00 0.00 0.00 3.51
76 77 0.392998 CTGTAAATGCTCGGCCCACT 60.393 55.000 0.00 0.00 0.00 4.00
77 78 0.676782 ACTGTAAATGCTCGGCCCAC 60.677 55.000 0.00 0.00 0.00 4.61
78 79 0.037590 AACTGTAAATGCTCGGCCCA 59.962 50.000 0.00 0.00 0.00 5.36
79 80 1.173913 AAACTGTAAATGCTCGGCCC 58.826 50.000 0.00 0.00 0.00 5.80
80 81 2.488153 AGAAAACTGTAAATGCTCGGCC 59.512 45.455 0.00 0.00 0.00 6.13
81 82 3.831715 AGAAAACTGTAAATGCTCGGC 57.168 42.857 0.00 0.00 0.00 5.54
82 83 8.594881 AGATATAGAAAACTGTAAATGCTCGG 57.405 34.615 0.00 0.00 0.00 4.63
168 169 5.941948 AAGTGACATAAGAAAACCGGAAG 57.058 39.130 9.46 0.00 0.00 3.46
169 170 7.989416 ATTAAGTGACATAAGAAAACCGGAA 57.011 32.000 9.46 0.00 0.00 4.30
170 171 7.989416 AATTAAGTGACATAAGAAAACCGGA 57.011 32.000 9.46 0.00 0.00 5.14
290 291 9.283768 TCATTGTGTTGTAGAAGTTTATCATGT 57.716 29.630 0.00 0.00 0.00 3.21
293 294 9.337396 AGTTCATTGTGTTGTAGAAGTTTATCA 57.663 29.630 0.00 0.00 0.00 2.15
297 298 9.705290 AAAAAGTTCATTGTGTTGTAGAAGTTT 57.295 25.926 0.00 0.00 41.19 2.66
320 321 7.739477 CGCAAAATTCATCGCTTATTTGAAAAA 59.261 29.630 0.00 0.00 33.45 1.94
321 322 7.226084 CGCAAAATTCATCGCTTATTTGAAAA 58.774 30.769 0.00 0.00 33.45 2.29
322 323 6.183360 CCGCAAAATTCATCGCTTATTTGAAA 60.183 34.615 0.00 0.00 33.45 2.69
323 324 5.288232 CCGCAAAATTCATCGCTTATTTGAA 59.712 36.000 0.00 0.00 34.18 2.69
324 325 4.797868 CCGCAAAATTCATCGCTTATTTGA 59.202 37.500 0.00 0.00 31.23 2.69
325 326 4.797868 TCCGCAAAATTCATCGCTTATTTG 59.202 37.500 0.00 0.00 0.00 2.32
326 327 4.798387 GTCCGCAAAATTCATCGCTTATTT 59.202 37.500 0.00 0.00 0.00 1.40
327 328 4.142491 TGTCCGCAAAATTCATCGCTTATT 60.142 37.500 0.00 0.00 0.00 1.40
328 329 3.376859 TGTCCGCAAAATTCATCGCTTAT 59.623 39.130 0.00 0.00 0.00 1.73
329 330 2.744741 TGTCCGCAAAATTCATCGCTTA 59.255 40.909 0.00 0.00 0.00 3.09
330 331 1.539388 TGTCCGCAAAATTCATCGCTT 59.461 42.857 0.00 0.00 0.00 4.68
331 332 1.164411 TGTCCGCAAAATTCATCGCT 58.836 45.000 0.00 0.00 0.00 4.93
332 333 1.975837 TTGTCCGCAAAATTCATCGC 58.024 45.000 0.00 0.00 0.00 4.58
333 334 4.165036 TGAATTGTCCGCAAAATTCATCG 58.835 39.130 0.25 0.00 44.05 3.84
336 337 4.313277 TGTGAATTGTCCGCAAAATTCA 57.687 36.364 0.25 0.25 45.74 2.57
337 338 5.234116 AGTTTGTGAATTGTCCGCAAAATTC 59.766 36.000 6.06 0.00 43.03 2.17
338 339 5.006552 CAGTTTGTGAATTGTCCGCAAAATT 59.993 36.000 6.06 0.00 43.03 1.82
339 340 4.507388 CAGTTTGTGAATTGTCCGCAAAAT 59.493 37.500 6.06 3.25 43.03 1.82
340 341 3.862267 CAGTTTGTGAATTGTCCGCAAAA 59.138 39.130 6.06 0.00 43.03 2.44
341 342 3.119316 ACAGTTTGTGAATTGTCCGCAAA 60.119 39.130 0.00 0.00 40.40 3.68
342 343 2.425312 ACAGTTTGTGAATTGTCCGCAA 59.575 40.909 0.00 0.00 39.16 4.85
343 344 2.020720 ACAGTTTGTGAATTGTCCGCA 58.979 42.857 0.00 0.00 30.86 5.69
344 345 2.774439 ACAGTTTGTGAATTGTCCGC 57.226 45.000 0.00 0.00 30.86 5.54
345 346 7.062371 TGTTAAAAACAGTTTGTGAATTGTCCG 59.938 33.333 0.00 0.00 35.00 4.79
346 347 8.245701 TGTTAAAAACAGTTTGTGAATTGTCC 57.754 30.769 0.00 0.00 35.00 4.02
369 370 8.711457 CGAAAGCATTTTCTTGGAAAATATTGT 58.289 29.630 15.03 5.11 39.27 2.71
370 371 8.924691 TCGAAAGCATTTTCTTGGAAAATATTG 58.075 29.630 15.03 8.45 39.27 1.90
371 372 9.487790 TTCGAAAGCATTTTCTTGGAAAATATT 57.512 25.926 15.03 11.31 39.27 1.28
372 373 9.657419 ATTCGAAAGCATTTTCTTGGAAAATAT 57.343 25.926 15.03 7.14 39.27 1.28
373 374 9.487790 AATTCGAAAGCATTTTCTTGGAAAATA 57.512 25.926 15.03 2.06 39.27 1.40
374 375 7.967890 ATTCGAAAGCATTTTCTTGGAAAAT 57.032 28.000 0.00 11.10 39.27 1.82
375 376 7.784633 AATTCGAAAGCATTTTCTTGGAAAA 57.215 28.000 0.00 7.71 39.27 2.29
376 377 7.784633 AAATTCGAAAGCATTTTCTTGGAAA 57.215 28.000 0.00 0.00 39.27 3.13
377 378 7.784633 AAAATTCGAAAGCATTTTCTTGGAA 57.215 28.000 0.00 0.00 41.84 3.53
434 435 8.802267 CCCAAAGTTTGATTCAATAACCTTAGA 58.198 33.333 17.33 0.00 0.00 2.10
435 436 7.545615 GCCCAAAGTTTGATTCAATAACCTTAG 59.454 37.037 17.33 0.00 0.00 2.18
436 437 7.015682 TGCCCAAAGTTTGATTCAATAACCTTA 59.984 33.333 17.33 0.00 0.00 2.69
437 438 6.183361 TGCCCAAAGTTTGATTCAATAACCTT 60.183 34.615 17.33 0.00 0.00 3.50
438 439 5.306678 TGCCCAAAGTTTGATTCAATAACCT 59.693 36.000 17.33 0.00 0.00 3.50
439 440 5.546526 TGCCCAAAGTTTGATTCAATAACC 58.453 37.500 17.33 0.00 0.00 2.85
440 441 5.120674 GCTGCCCAAAGTTTGATTCAATAAC 59.879 40.000 17.33 0.00 0.00 1.89
441 442 5.237048 GCTGCCCAAAGTTTGATTCAATAA 58.763 37.500 17.33 0.00 0.00 1.40
442 443 4.322650 GGCTGCCCAAAGTTTGATTCAATA 60.323 41.667 17.33 0.00 0.00 1.90
443 444 3.557686 GGCTGCCCAAAGTTTGATTCAAT 60.558 43.478 17.33 0.00 0.00 2.57
444 445 2.224257 GGCTGCCCAAAGTTTGATTCAA 60.224 45.455 17.33 0.00 0.00 2.69
445 446 1.344114 GGCTGCCCAAAGTTTGATTCA 59.656 47.619 17.33 9.97 0.00 2.57
446 447 1.338105 GGGCTGCCCAAAGTTTGATTC 60.338 52.381 32.46 0.00 44.65 2.52
447 448 0.686789 GGGCTGCCCAAAGTTTGATT 59.313 50.000 32.46 0.00 44.65 2.57
448 449 2.365410 GGGCTGCCCAAAGTTTGAT 58.635 52.632 32.46 0.00 44.65 2.57
449 450 3.869481 GGGCTGCCCAAAGTTTGA 58.131 55.556 32.46 0.00 44.65 2.69
464 465 2.120909 CCACGCCTGCCTTTATGGG 61.121 63.158 0.00 0.00 36.00 4.00
465 466 2.120909 CCCACGCCTGCCTTTATGG 61.121 63.158 0.00 0.00 39.35 2.74
466 467 2.774799 GCCCACGCCTGCCTTTATG 61.775 63.158 0.00 0.00 0.00 1.90
467 468 2.440247 GCCCACGCCTGCCTTTAT 60.440 61.111 0.00 0.00 0.00 1.40
483 484 3.056328 GAGGAGGTGGGCAAACGC 61.056 66.667 0.00 0.00 0.00 4.84
484 485 2.359975 GGAGGAGGTGGGCAAACG 60.360 66.667 0.00 0.00 0.00 3.60
485 486 0.681243 GATGGAGGAGGTGGGCAAAC 60.681 60.000 0.00 0.00 0.00 2.93
486 487 1.691219 GATGGAGGAGGTGGGCAAA 59.309 57.895 0.00 0.00 0.00 3.68
487 488 2.308722 GGATGGAGGAGGTGGGCAA 61.309 63.158 0.00 0.00 0.00 4.52
488 489 2.692368 GGATGGAGGAGGTGGGCA 60.692 66.667 0.00 0.00 0.00 5.36
489 490 1.649271 ATTGGATGGAGGAGGTGGGC 61.649 60.000 0.00 0.00 0.00 5.36
490 491 0.184451 CATTGGATGGAGGAGGTGGG 59.816 60.000 0.00 0.00 0.00 4.61
491 492 0.466922 GCATTGGATGGAGGAGGTGG 60.467 60.000 0.00 0.00 0.00 4.61
492 493 0.256752 TGCATTGGATGGAGGAGGTG 59.743 55.000 0.00 0.00 0.00 4.00
493 494 1.002069 TTGCATTGGATGGAGGAGGT 58.998 50.000 0.00 0.00 0.00 3.85
494 495 1.688772 CTTGCATTGGATGGAGGAGG 58.311 55.000 0.00 0.00 29.05 4.30
495 496 1.030457 GCTTGCATTGGATGGAGGAG 58.970 55.000 0.00 0.00 29.05 3.69
496 497 0.396139 GGCTTGCATTGGATGGAGGA 60.396 55.000 0.00 0.00 29.05 3.71
497 498 1.397390 GGGCTTGCATTGGATGGAGG 61.397 60.000 0.00 0.00 0.00 4.30
498 499 0.685131 TGGGCTTGCATTGGATGGAG 60.685 55.000 0.00 0.00 0.00 3.86
499 500 0.252148 TTGGGCTTGCATTGGATGGA 60.252 50.000 0.00 0.00 0.00 3.41
500 501 0.614294 TTTGGGCTTGCATTGGATGG 59.386 50.000 0.00 0.00 0.00 3.51
501 502 2.680841 CAATTTGGGCTTGCATTGGATG 59.319 45.455 0.00 0.00 0.00 3.51
502 503 2.356330 CCAATTTGGGCTTGCATTGGAT 60.356 45.455 13.75 0.00 45.98 3.41
503 504 1.003349 CCAATTTGGGCTTGCATTGGA 59.997 47.619 13.75 0.00 45.98 3.53
504 505 1.455248 CCAATTTGGGCTTGCATTGG 58.545 50.000 7.60 7.65 39.75 3.16
514 515 4.707105 ACTTTTTCTTCAGCCAATTTGGG 58.293 39.130 17.03 1.62 38.19 4.12
515 516 5.050837 CGAACTTTTTCTTCAGCCAATTTGG 60.051 40.000 11.27 11.27 41.55 3.28
516 517 5.050837 CCGAACTTTTTCTTCAGCCAATTTG 60.051 40.000 0.00 0.00 0.00 2.32
517 518 5.049828 CCGAACTTTTTCTTCAGCCAATTT 58.950 37.500 0.00 0.00 0.00 1.82
518 519 4.620982 CCGAACTTTTTCTTCAGCCAATT 58.379 39.130 0.00 0.00 0.00 2.32
519 520 3.552890 GCCGAACTTTTTCTTCAGCCAAT 60.553 43.478 0.00 0.00 0.00 3.16
520 521 2.223711 GCCGAACTTTTTCTTCAGCCAA 60.224 45.455 0.00 0.00 0.00 4.52
521 522 1.336755 GCCGAACTTTTTCTTCAGCCA 59.663 47.619 0.00 0.00 0.00 4.75
522 523 1.335964 GGCCGAACTTTTTCTTCAGCC 60.336 52.381 0.00 0.00 0.00 4.85
523 524 1.335964 GGGCCGAACTTTTTCTTCAGC 60.336 52.381 0.00 0.00 0.00 4.26
524 525 2.226674 GAGGGCCGAACTTTTTCTTCAG 59.773 50.000 0.00 0.00 0.00 3.02
525 526 2.158667 AGAGGGCCGAACTTTTTCTTCA 60.159 45.455 0.00 0.00 0.00 3.02
526 527 2.505405 AGAGGGCCGAACTTTTTCTTC 58.495 47.619 0.00 0.00 0.00 2.87
527 528 2.658807 AGAGGGCCGAACTTTTTCTT 57.341 45.000 0.00 0.00 0.00 2.52
528 529 2.106684 AGAAGAGGGCCGAACTTTTTCT 59.893 45.455 13.00 3.13 0.00 2.52
529 530 2.484651 GAGAAGAGGGCCGAACTTTTTC 59.515 50.000 13.00 10.74 0.00 2.29
530 531 2.158667 TGAGAAGAGGGCCGAACTTTTT 60.159 45.455 13.00 6.87 0.00 1.94
531 532 1.420138 TGAGAAGAGGGCCGAACTTTT 59.580 47.619 13.00 8.81 0.00 2.27
532 533 1.002544 CTGAGAAGAGGGCCGAACTTT 59.997 52.381 13.00 5.73 0.00 2.66
533 534 0.610687 CTGAGAAGAGGGCCGAACTT 59.389 55.000 11.97 11.97 0.00 2.66
534 535 0.543174 ACTGAGAAGAGGGCCGAACT 60.543 55.000 0.00 0.00 0.00 3.01
535 536 0.321996 AACTGAGAAGAGGGCCGAAC 59.678 55.000 0.00 0.00 0.00 3.95
536 537 1.933021 TAACTGAGAAGAGGGCCGAA 58.067 50.000 0.00 0.00 0.00 4.30
537 538 1.933021 TTAACTGAGAAGAGGGCCGA 58.067 50.000 0.00 0.00 0.00 5.54
538 539 2.762535 TTTAACTGAGAAGAGGGCCG 57.237 50.000 0.00 0.00 0.00 6.13
559 560 2.948386 GAGGCCCGAGCTTCTTTTT 58.052 52.632 0.00 0.00 41.71 1.94
560 561 4.724262 GAGGCCCGAGCTTCTTTT 57.276 55.556 0.00 0.00 41.71 2.27
564 565 1.448717 GTTGAGAGGCCCGAGCTTC 60.449 63.158 0.00 0.00 45.15 3.86
565 566 2.665603 GTTGAGAGGCCCGAGCTT 59.334 61.111 0.00 0.00 39.73 3.74
566 567 3.764466 CGTTGAGAGGCCCGAGCT 61.764 66.667 0.00 0.00 39.73 4.09
567 568 4.821589 CCGTTGAGAGGCCCGAGC 62.822 72.222 0.00 0.00 38.76 5.03
585 586 2.694829 GATACGTGTAGCCTGGGCCG 62.695 65.000 8.11 7.17 43.17 6.13
586 587 1.069258 GATACGTGTAGCCTGGGCC 59.931 63.158 8.11 0.00 43.17 5.80
587 588 1.299926 CGATACGTGTAGCCTGGGC 60.300 63.158 3.00 3.00 42.33 5.36
588 589 1.299926 GCGATACGTGTAGCCTGGG 60.300 63.158 6.12 0.00 0.00 4.45
589 590 1.657487 CGCGATACGTGTAGCCTGG 60.657 63.158 11.48 0.00 36.87 4.45
590 591 1.657487 CCGCGATACGTGTAGCCTG 60.657 63.158 8.23 0.11 41.42 4.85
591 592 1.820906 TCCGCGATACGTGTAGCCT 60.821 57.895 8.23 0.00 41.42 4.58
592 593 1.656569 GTCCGCGATACGTGTAGCC 60.657 63.158 8.23 0.00 41.42 3.93
593 594 0.523968 TTGTCCGCGATACGTGTAGC 60.524 55.000 8.23 7.33 41.42 3.58
594 595 1.898938 TTTGTCCGCGATACGTGTAG 58.101 50.000 8.23 0.00 41.42 2.74
595 596 2.344504 TTTTGTCCGCGATACGTGTA 57.655 45.000 8.23 0.00 41.42 2.90
596 597 1.500108 TTTTTGTCCGCGATACGTGT 58.500 45.000 8.23 0.00 41.42 4.49
597 598 2.427169 CATTTTTGTCCGCGATACGTG 58.573 47.619 8.23 0.00 41.42 4.49
598 599 1.201987 GCATTTTTGTCCGCGATACGT 60.202 47.619 8.23 0.00 41.42 3.57
599 600 1.452717 GCATTTTTGTCCGCGATACG 58.547 50.000 8.23 0.00 43.15 3.06
605 606 1.486801 GTTGCGCATTTTTGTCCGC 59.513 52.632 12.75 0.00 45.99 5.54
606 607 0.318614 AGGTTGCGCATTTTTGTCCG 60.319 50.000 12.75 0.00 0.00 4.79
607 608 1.418373 GAGGTTGCGCATTTTTGTCC 58.582 50.000 12.75 5.67 0.00 4.02
608 609 1.052287 CGAGGTTGCGCATTTTTGTC 58.948 50.000 12.75 1.63 0.00 3.18
609 610 3.177883 CGAGGTTGCGCATTTTTGT 57.822 47.368 12.75 0.00 0.00 2.83
618 619 2.507992 CAGAGGAGCGAGGTTGCG 60.508 66.667 0.00 0.00 40.67 4.85
619 620 1.446966 GACAGAGGAGCGAGGTTGC 60.447 63.158 0.00 0.00 0.00 4.17
620 621 0.108898 CAGACAGAGGAGCGAGGTTG 60.109 60.000 0.00 0.00 0.00 3.77
621 622 1.882989 GCAGACAGAGGAGCGAGGTT 61.883 60.000 0.00 0.00 0.00 3.50
622 623 2.347322 GCAGACAGAGGAGCGAGGT 61.347 63.158 0.00 0.00 0.00 3.85
623 624 2.003658 GAGCAGACAGAGGAGCGAGG 62.004 65.000 0.00 0.00 0.00 4.63
624 625 1.031571 AGAGCAGACAGAGGAGCGAG 61.032 60.000 0.00 0.00 0.00 5.03
625 626 1.001517 AGAGCAGACAGAGGAGCGA 60.002 57.895 0.00 0.00 0.00 4.93
626 627 1.139308 CAGAGCAGACAGAGGAGCG 59.861 63.158 0.00 0.00 0.00 5.03
627 628 0.607620 AACAGAGCAGACAGAGGAGC 59.392 55.000 0.00 0.00 0.00 4.70
628 629 1.204467 GGAACAGAGCAGACAGAGGAG 59.796 57.143 0.00 0.00 0.00 3.69
629 630 1.261480 GGAACAGAGCAGACAGAGGA 58.739 55.000 0.00 0.00 0.00 3.71
630 631 0.972134 TGGAACAGAGCAGACAGAGG 59.028 55.000 0.00 0.00 0.00 3.69
631 632 1.668337 CGTGGAACAGAGCAGACAGAG 60.668 57.143 0.00 0.00 41.80 3.35
632 633 0.315251 CGTGGAACAGAGCAGACAGA 59.685 55.000 0.00 0.00 41.80 3.41
633 634 1.287730 GCGTGGAACAGAGCAGACAG 61.288 60.000 0.00 0.00 41.80 3.51
634 635 1.300931 GCGTGGAACAGAGCAGACA 60.301 57.895 0.00 0.00 41.80 3.41
667 668 1.457009 ATAGAAGCGGACGGAGGAGC 61.457 60.000 0.00 0.00 0.00 4.70
668 669 0.594110 GATAGAAGCGGACGGAGGAG 59.406 60.000 0.00 0.00 0.00 3.69
669 670 0.822532 GGATAGAAGCGGACGGAGGA 60.823 60.000 0.00 0.00 0.00 3.71
671 672 0.594110 GAGGATAGAAGCGGACGGAG 59.406 60.000 0.00 0.00 0.00 4.63
672 673 0.822532 GGAGGATAGAAGCGGACGGA 60.823 60.000 0.00 0.00 0.00 4.69
673 674 1.660917 GGAGGATAGAAGCGGACGG 59.339 63.158 0.00 0.00 0.00 4.79
674 675 0.824182 AGGGAGGATAGAAGCGGACG 60.824 60.000 0.00 0.00 0.00 4.79
718 719 2.279517 GCACCGCACGGAGGATAG 60.280 66.667 17.40 0.00 38.96 2.08
720 721 4.148825 GAGCACCGCACGGAGGAT 62.149 66.667 17.40 6.01 38.96 3.24
739 740 4.233053 TCCTTCCTCTCTCTTCCTTCCATA 59.767 45.833 0.00 0.00 0.00 2.74
747 748 5.683770 GCCTTACATTCCTTCCTCTCTCTTC 60.684 48.000 0.00 0.00 0.00 2.87
821 822 4.175489 CACCGCATGCAGCAGCTC 62.175 66.667 19.57 0.00 46.13 4.09
897 898 2.045926 CCCCCGTGGAAAGAGCTG 60.046 66.667 0.00 0.00 35.39 4.24
920 921 4.660938 GGTTTGAGGCGCCCAGGT 62.661 66.667 26.15 3.43 0.00 4.00
921 922 3.944250 ATGGTTTGAGGCGCCCAGG 62.944 63.158 26.15 0.00 0.00 4.45
938 939 3.157087 CCAACTTACTTGGCACTTGGAT 58.843 45.455 0.00 0.00 43.37 3.41
939 940 2.582052 CCAACTTACTTGGCACTTGGA 58.418 47.619 0.00 0.00 43.37 3.53
948 949 5.617252 TGACCTCTAAACCCAACTTACTTG 58.383 41.667 0.00 0.00 0.00 3.16
949 950 5.899631 TGACCTCTAAACCCAACTTACTT 57.100 39.130 0.00 0.00 0.00 2.24
1024 1025 3.958860 GGTGAGGTGGTGGCTGCT 61.959 66.667 0.00 0.00 0.00 4.24
1054 1058 1.906333 GGGTGGCGTGGGATTTTGT 60.906 57.895 0.00 0.00 0.00 2.83
1056 1060 1.606313 CAGGGTGGCGTGGGATTTT 60.606 57.895 0.00 0.00 0.00 1.82
1071 1075 4.379243 ACGCCGGACTTGAGCAGG 62.379 66.667 5.05 0.00 0.00 4.85
1281 1285 4.681978 GTGTTGGCGGCGAGTCCT 62.682 66.667 12.98 0.00 0.00 3.85
1392 1396 0.504384 CAGCGAAGACATTATCGGCG 59.496 55.000 0.00 0.00 39.38 6.46
1516 1520 1.559682 AGACTCCACATAACCGGCAAT 59.440 47.619 0.00 0.00 0.00 3.56
1572 1576 2.482494 AGTAACCCCTCCCTCTTCATG 58.518 52.381 0.00 0.00 0.00 3.07
1576 1580 1.557426 GGGAAGTAACCCCTCCCTCTT 60.557 57.143 0.00 0.00 43.81 2.85
1596 1600 2.094659 AGCGAATGTTGCCTCGTCG 61.095 57.895 0.00 0.00 37.39 5.12
1643 1647 1.402456 GCTGGTGCATCAAGAAGCAAG 60.402 52.381 0.00 0.00 43.20 4.01
1746 1750 2.239654 CCTTCTAGAATTCACCAGGGCA 59.760 50.000 5.44 0.00 0.00 5.36
1885 1889 0.827925 TCAGGCTGAACTCCACTCGT 60.828 55.000 16.28 0.00 0.00 4.18
1956 1960 3.189606 ACCATGAATTACTGTCCCTCCA 58.810 45.455 0.00 0.00 0.00 3.86
1992 1996 1.801913 CGTGACTCCTTCGAAGCCG 60.802 63.158 19.99 14.02 37.07 5.52
2050 2054 2.408271 TCCATCATGCAGTTCTCACC 57.592 50.000 0.00 0.00 0.00 4.02
2107 2111 1.978580 AGAATTCCAGGAGACGGTGTT 59.021 47.619 0.65 0.00 0.00 3.32
2197 2201 8.564574 TGCAAACTCGTCAGTTCTAATATTTTT 58.435 29.630 0.00 0.00 42.45 1.94
2234 2238 0.390340 GTCTGAGCATGAACGCAGGA 60.390 55.000 0.00 0.00 37.96 3.86
2365 2369 4.159135 AGACTCCATTGCATCATCCAAAAC 59.841 41.667 0.00 0.00 0.00 2.43
2368 2372 3.657398 AGACTCCATTGCATCATCCAA 57.343 42.857 0.00 0.00 0.00 3.53
2383 2387 3.625649 ATCTGCCTCCTCAAAAGACTC 57.374 47.619 0.00 0.00 0.00 3.36
2421 2429 7.549839 CATAACCAAACATCATTGAGTTCCAT 58.450 34.615 0.00 0.00 31.84 3.41
2430 2438 3.772932 CTGCGCATAACCAAACATCATT 58.227 40.909 12.24 0.00 0.00 2.57
2497 2513 4.998051 TGATCCAAAGGAACCTTAAGCTT 58.002 39.130 3.48 3.48 34.34 3.74
2569 2585 5.772825 TTGAGGATTTCTGAACCTTTGTG 57.227 39.130 1.57 0.00 33.89 3.33
2572 2588 6.472887 TCGTATTGAGGATTTCTGAACCTTT 58.527 36.000 1.57 0.00 33.89 3.11
2691 2707 7.201750 GGTTTAAATGGCATACGGTCAATAAGA 60.202 37.037 0.00 0.00 32.77 2.10
2701 2717 4.290155 GCATCTGGTTTAAATGGCATACG 58.710 43.478 0.00 0.00 0.00 3.06
2702 2718 4.099266 TGGCATCTGGTTTAAATGGCATAC 59.901 41.667 10.05 0.00 46.92 2.39
2713 2729 1.259609 CACACCATGGCATCTGGTTT 58.740 50.000 13.04 1.54 44.67 3.27
2778 2794 1.462731 GGTTGGCCACATCACTTGCA 61.463 55.000 3.88 0.00 34.09 4.08
2795 2811 4.149273 AGGTTCTGCCTCCAATAGATGGT 61.149 47.826 0.00 0.00 46.96 3.55
2847 2863 3.118261 TCCCAAGACCAGAATACATGCTC 60.118 47.826 0.00 0.00 0.00 4.26
3065 3081 2.642311 TCCATGGCTCCACTTGTTTCTA 59.358 45.455 6.96 0.00 0.00 2.10
3138 3154 5.460091 TCGAAGAGTAGAATCGATGCAAATG 59.540 40.000 6.08 0.00 40.34 2.32
3201 3219 2.436417 TGATAGTTCTGCAGCCAAACC 58.564 47.619 9.47 0.00 0.00 3.27
3203 3221 5.726980 AATTTGATAGTTCTGCAGCCAAA 57.273 34.783 9.47 11.65 0.00 3.28
3209 3227 5.199723 TGCCCATAATTTGATAGTTCTGCA 58.800 37.500 0.00 0.00 0.00 4.41
3260 3278 4.119862 TGTACAAGAGAAGTGTGCTCAAC 58.880 43.478 0.00 0.00 34.85 3.18
3333 3351 7.789831 ACCTTTCCATATATTGACAGAGAGGTA 59.210 37.037 2.33 0.00 30.10 3.08
3334 3352 6.617371 ACCTTTCCATATATTGACAGAGAGGT 59.383 38.462 2.33 0.00 0.00 3.85
3335 3353 6.933521 CACCTTTCCATATATTGACAGAGAGG 59.066 42.308 2.33 0.00 0.00 3.69
3336 3354 7.730084 TCACCTTTCCATATATTGACAGAGAG 58.270 38.462 2.33 0.00 0.00 3.20
3337 3355 7.345653 ACTCACCTTTCCATATATTGACAGAGA 59.654 37.037 2.33 0.58 0.00 3.10
3366 3384 2.676342 GGTAATCGTAACTGCACCCTTG 59.324 50.000 0.00 0.00 0.00 3.61
3391 3409 9.274206 GTACTATCCTCAAAAACAAGAGAAAGT 57.726 33.333 0.00 0.00 33.74 2.66
3396 3414 8.608844 ACAAGTACTATCCTCAAAAACAAGAG 57.391 34.615 0.00 0.00 0.00 2.85
3423 3441 8.017373 CCTGCAACACTAATTTATATGAATCCG 58.983 37.037 0.00 0.00 0.00 4.18
3434 3452 4.479158 TCCCTTTCCTGCAACACTAATTT 58.521 39.130 0.00 0.00 0.00 1.82
3439 3457 2.452600 TTTCCCTTTCCTGCAACACT 57.547 45.000 0.00 0.00 0.00 3.55
3440 3458 3.535280 TTTTTCCCTTTCCTGCAACAC 57.465 42.857 0.00 0.00 0.00 3.32
3442 3460 7.118245 CAGAATAATTTTTCCCTTTCCTGCAAC 59.882 37.037 5.17 0.00 0.00 4.17
3445 3463 6.935167 TCAGAATAATTTTTCCCTTTCCTGC 58.065 36.000 5.17 0.00 0.00 4.85
3446 3464 8.037166 CCTTCAGAATAATTTTTCCCTTTCCTG 58.963 37.037 5.17 0.00 0.00 3.86
3455 3473 8.825745 TGTTTTGCACCTTCAGAATAATTTTTC 58.174 29.630 0.77 0.77 0.00 2.29
3456 3474 8.729805 TGTTTTGCACCTTCAGAATAATTTTT 57.270 26.923 0.00 0.00 0.00 1.94
3498 3516 6.615264 AATCTGCAATCTGCTACATACTTG 57.385 37.500 0.00 0.00 45.31 3.16
3499 3517 7.989741 ACTTAATCTGCAATCTGCTACATACTT 59.010 33.333 0.00 0.00 45.31 2.24
3513 3531 5.939883 AGTACATGAAGCACTTAATCTGCAA 59.060 36.000 0.00 0.00 37.08 4.08
3537 3555 5.545063 TCCCATCTGCATTATAGAACGAA 57.455 39.130 0.00 0.00 0.00 3.85
3562 3580 3.636300 AGGTGCTCAATGCTTTAAACACA 59.364 39.130 10.76 0.00 43.37 3.72
3616 3634 5.476599 CACTTACACCATCTCCATTTTCCAA 59.523 40.000 0.00 0.00 0.00 3.53
3658 3676 3.723835 CGTTATAGCGCGCTGTTCTTTTT 60.724 43.478 41.85 16.60 0.00 1.94
3659 3677 2.222729 CGTTATAGCGCGCTGTTCTTTT 60.223 45.455 41.85 17.41 0.00 2.27
3660 3678 1.323534 CGTTATAGCGCGCTGTTCTTT 59.676 47.619 41.85 18.23 0.00 2.52
3661 3679 0.921347 CGTTATAGCGCGCTGTTCTT 59.079 50.000 41.85 22.62 0.00 2.52
3662 3680 2.578369 CGTTATAGCGCGCTGTTCT 58.422 52.632 41.85 24.87 0.00 3.01
3671 3689 1.582502 GCTATTAGCGGCGTTATAGCG 59.417 52.381 23.43 4.42 37.00 4.26
3672 3690 2.602878 TGCTATTAGCGGCGTTATAGC 58.397 47.619 27.31 27.31 46.26 2.97
3673 3691 4.492570 GCATTGCTATTAGCGGCGTTATAG 60.493 45.833 9.37 13.57 46.26 1.31
3674 3692 3.369756 GCATTGCTATTAGCGGCGTTATA 59.630 43.478 9.37 3.30 46.26 0.98
3675 3693 2.159627 GCATTGCTATTAGCGGCGTTAT 59.840 45.455 9.37 2.16 46.26 1.89
3676 3694 1.529438 GCATTGCTATTAGCGGCGTTA 59.471 47.619 9.37 3.34 46.26 3.18
3677 3695 0.307760 GCATTGCTATTAGCGGCGTT 59.692 50.000 9.37 4.68 46.26 4.84
3678 3696 0.532862 AGCATTGCTATTAGCGGCGT 60.533 50.000 10.00 0.00 46.26 5.68
3679 3697 1.428448 TAGCATTGCTATTAGCGGCG 58.572 50.000 14.33 0.51 46.26 6.46
3688 3706 4.051237 CTCAGCACGTTATAGCATTGCTA 58.949 43.478 20.06 20.06 45.55 3.49
3689 3707 2.868583 CTCAGCACGTTATAGCATTGCT 59.131 45.455 16.63 16.63 44.35 3.91
3690 3708 2.866156 TCTCAGCACGTTATAGCATTGC 59.134 45.455 0.00 0.00 0.00 3.56
3691 3709 5.234972 TGATTCTCAGCACGTTATAGCATTG 59.765 40.000 0.00 0.00 0.00 2.82
3692 3710 5.359756 TGATTCTCAGCACGTTATAGCATT 58.640 37.500 0.00 0.00 0.00 3.56
3693 3711 4.948847 TGATTCTCAGCACGTTATAGCAT 58.051 39.130 0.00 0.00 0.00 3.79
3694 3712 4.385358 TGATTCTCAGCACGTTATAGCA 57.615 40.909 0.00 0.00 0.00 3.49
3695 3713 5.226396 AGATGATTCTCAGCACGTTATAGC 58.774 41.667 0.00 0.00 34.77 2.97
3696 3714 6.926280 GAGATGATTCTCAGCACGTTATAG 57.074 41.667 0.00 0.00 46.49 1.31
3697 3715 6.069213 GCGAGATGATTCTCAGCACGTTATA 61.069 44.000 12.32 0.00 45.73 0.98
3698 3716 5.318424 GCGAGATGATTCTCAGCACGTTAT 61.318 45.833 12.32 0.00 45.73 1.89
3699 3717 4.036055 GCGAGATGATTCTCAGCACGTTA 61.036 47.826 12.32 0.00 45.73 3.18
3700 3718 3.304337 GCGAGATGATTCTCAGCACGTT 61.304 50.000 12.32 0.00 45.73 3.99
3701 3719 1.800655 GCGAGATGATTCTCAGCACGT 60.801 52.381 12.32 0.00 45.73 4.49
3708 3726 9.202273 ACTGATTTATTTAGCGAGATGATTCTC 57.798 33.333 0.00 0.00 44.24 2.87
3709 3727 8.986847 CACTGATTTATTTAGCGAGATGATTCT 58.013 33.333 0.00 0.00 33.88 2.40
3710 3728 8.768955 ACACTGATTTATTTAGCGAGATGATTC 58.231 33.333 0.00 0.00 0.00 2.52
3711 3729 8.668510 ACACTGATTTATTTAGCGAGATGATT 57.331 30.769 0.00 0.00 0.00 2.57
3712 3730 9.197694 GTACACTGATTTATTTAGCGAGATGAT 57.802 33.333 0.00 0.00 0.00 2.45
3713 3731 8.194769 TGTACACTGATTTATTTAGCGAGATGA 58.805 33.333 0.00 0.00 0.00 2.92
3714 3732 8.352752 TGTACACTGATTTATTTAGCGAGATG 57.647 34.615 0.00 0.00 0.00 2.90
3715 3733 8.818057 GTTGTACACTGATTTATTTAGCGAGAT 58.182 33.333 0.00 0.00 0.00 2.75
3716 3734 7.008901 CGTTGTACACTGATTTATTTAGCGAGA 59.991 37.037 0.00 0.00 0.00 4.04
3717 3735 7.111139 CGTTGTACACTGATTTATTTAGCGAG 58.889 38.462 0.00 0.00 0.00 5.03
3718 3736 6.454583 GCGTTGTACACTGATTTATTTAGCGA 60.455 38.462 0.00 0.00 0.00 4.93
3719 3737 5.671140 GCGTTGTACACTGATTTATTTAGCG 59.329 40.000 0.00 0.00 0.00 4.26
3720 3738 5.963586 GGCGTTGTACACTGATTTATTTAGC 59.036 40.000 0.00 0.00 0.00 3.09
3721 3739 7.303634 AGGCGTTGTACACTGATTTATTTAG 57.696 36.000 0.00 0.00 0.00 1.85
3722 3740 6.035220 CGAGGCGTTGTACACTGATTTATTTA 59.965 38.462 0.00 0.00 0.00 1.40
3723 3741 5.163893 CGAGGCGTTGTACACTGATTTATTT 60.164 40.000 0.00 0.00 0.00 1.40
3724 3742 4.328983 CGAGGCGTTGTACACTGATTTATT 59.671 41.667 0.00 0.00 0.00 1.40
3725 3743 3.863424 CGAGGCGTTGTACACTGATTTAT 59.137 43.478 0.00 0.00 0.00 1.40
3726 3744 3.247442 CGAGGCGTTGTACACTGATTTA 58.753 45.455 0.00 0.00 0.00 1.40
3727 3745 2.066262 CGAGGCGTTGTACACTGATTT 58.934 47.619 0.00 0.00 0.00 2.17
3728 3746 1.710013 CGAGGCGTTGTACACTGATT 58.290 50.000 0.00 0.00 0.00 2.57
3729 3747 0.736325 GCGAGGCGTTGTACACTGAT 60.736 55.000 0.00 0.00 0.00 2.90
3730 3748 1.372499 GCGAGGCGTTGTACACTGA 60.372 57.895 0.00 0.00 0.00 3.41
3731 3749 0.109458 TAGCGAGGCGTTGTACACTG 60.109 55.000 0.00 0.00 0.00 3.66
3732 3750 0.599558 TTAGCGAGGCGTTGTACACT 59.400 50.000 0.00 0.00 0.00 3.55
3733 3751 1.636988 ATTAGCGAGGCGTTGTACAC 58.363 50.000 0.00 0.00 0.00 2.90
3734 3752 2.797087 GCTATTAGCGAGGCGTTGTACA 60.797 50.000 0.00 0.00 0.00 2.90
3735 3753 1.785430 GCTATTAGCGAGGCGTTGTAC 59.215 52.381 0.00 0.00 0.00 2.90
3736 3754 1.406180 TGCTATTAGCGAGGCGTTGTA 59.594 47.619 10.94 0.00 46.26 2.41
3737 3755 0.174845 TGCTATTAGCGAGGCGTTGT 59.825 50.000 10.94 0.00 46.26 3.32
3738 3756 0.577269 GTGCTATTAGCGAGGCGTTG 59.423 55.000 10.94 0.00 46.26 4.10
3739 3757 0.870307 CGTGCTATTAGCGAGGCGTT 60.870 55.000 10.94 0.00 46.26 4.84
3740 3758 1.299165 CGTGCTATTAGCGAGGCGT 60.299 57.895 10.94 0.00 46.26 5.68
3741 3759 2.649257 GCGTGCTATTAGCGAGGCG 61.649 63.158 10.94 12.48 46.26 5.52
3742 3760 0.039437 TAGCGTGCTATTAGCGAGGC 60.039 55.000 17.41 17.41 46.26 4.70
3743 3761 2.638556 ATAGCGTGCTATTAGCGAGG 57.361 50.000 8.54 7.17 46.26 4.63
3744 3762 3.102276 GCTATAGCGTGCTATTAGCGAG 58.898 50.000 18.62 11.00 46.26 5.03
3745 3763 3.132629 GCTATAGCGTGCTATTAGCGA 57.867 47.619 18.62 0.92 46.26 4.93
3758 3776 4.413087 AGTGTGTTATATCGCGCTATAGC 58.587 43.478 15.09 15.09 36.99 2.97
3759 3777 9.371333 CTATTAGTGTGTTATATCGCGCTATAG 57.629 37.037 15.05 13.89 39.52 1.31
3760 3778 7.854422 GCTATTAGTGTGTTATATCGCGCTATA 59.146 37.037 15.05 4.63 39.52 1.31
3761 3779 6.691818 GCTATTAGTGTGTTATATCGCGCTAT 59.308 38.462 15.05 7.70 39.52 2.97
3762 3780 6.025896 GCTATTAGTGTGTTATATCGCGCTA 58.974 40.000 5.56 11.74 39.07 4.26
3763 3781 4.857588 GCTATTAGTGTGTTATATCGCGCT 59.142 41.667 5.56 13.40 40.84 5.92
3764 3782 4.619760 TGCTATTAGTGTGTTATATCGCGC 59.380 41.667 0.00 0.00 0.00 6.86
3765 3783 6.871044 ATGCTATTAGTGTGTTATATCGCG 57.129 37.500 0.00 0.00 0.00 5.87
3773 3791 9.408648 AGCCTTAAAATATGCTATTAGTGTGTT 57.591 29.630 0.00 0.00 30.97 3.32
3774 3792 8.840321 CAGCCTTAAAATATGCTATTAGTGTGT 58.160 33.333 0.00 0.00 31.69 3.72
3775 3793 8.292448 CCAGCCTTAAAATATGCTATTAGTGTG 58.708 37.037 0.00 0.00 31.69 3.82
3776 3794 7.040409 GCCAGCCTTAAAATATGCTATTAGTGT 60.040 37.037 0.00 0.00 31.69 3.55
3777 3795 7.040478 TGCCAGCCTTAAAATATGCTATTAGTG 60.040 37.037 0.00 0.00 31.69 2.74
3778 3796 7.004086 TGCCAGCCTTAAAATATGCTATTAGT 58.996 34.615 0.00 0.00 31.69 2.24
3779 3797 7.175641 AGTGCCAGCCTTAAAATATGCTATTAG 59.824 37.037 0.00 0.00 31.69 1.73
3780 3798 7.004086 AGTGCCAGCCTTAAAATATGCTATTA 58.996 34.615 0.00 0.00 31.69 0.98
3781 3799 5.835280 AGTGCCAGCCTTAAAATATGCTATT 59.165 36.000 0.00 0.00 31.69 1.73
3782 3800 5.388654 AGTGCCAGCCTTAAAATATGCTAT 58.611 37.500 0.00 0.00 31.69 2.97
3783 3801 4.792068 AGTGCCAGCCTTAAAATATGCTA 58.208 39.130 0.00 0.00 31.69 3.49
3784 3802 3.635591 AGTGCCAGCCTTAAAATATGCT 58.364 40.909 0.00 0.00 33.52 3.79
3785 3803 5.712152 ATAGTGCCAGCCTTAAAATATGC 57.288 39.130 0.00 0.00 0.00 3.14
3789 3807 8.204160 GGAAAAATATAGTGCCAGCCTTAAAAT 58.796 33.333 0.00 0.00 0.00 1.82
3790 3808 7.398904 AGGAAAAATATAGTGCCAGCCTTAAAA 59.601 33.333 0.00 0.00 0.00 1.52
3791 3809 6.895204 AGGAAAAATATAGTGCCAGCCTTAAA 59.105 34.615 0.00 0.00 0.00 1.52
3792 3810 6.431722 AGGAAAAATATAGTGCCAGCCTTAA 58.568 36.000 0.00 0.00 0.00 1.85
3793 3811 6.013554 AGGAAAAATATAGTGCCAGCCTTA 57.986 37.500 0.00 0.00 0.00 2.69
3794 3812 4.871822 AGGAAAAATATAGTGCCAGCCTT 58.128 39.130 0.00 0.00 0.00 4.35
3795 3813 4.526438 AGGAAAAATATAGTGCCAGCCT 57.474 40.909 0.00 0.00 0.00 4.58
3796 3814 4.889995 AGAAGGAAAAATATAGTGCCAGCC 59.110 41.667 0.00 0.00 0.00 4.85
3797 3815 5.590259 TCAGAAGGAAAAATATAGTGCCAGC 59.410 40.000 0.00 0.00 0.00 4.85
3798 3816 7.255381 CCATCAGAAGGAAAAATATAGTGCCAG 60.255 40.741 0.00 0.00 0.00 4.85
3799 3817 6.547141 CCATCAGAAGGAAAAATATAGTGCCA 59.453 38.462 0.00 0.00 0.00 4.92
3800 3818 6.772716 TCCATCAGAAGGAAAAATATAGTGCC 59.227 38.462 0.00 0.00 30.71 5.01
3801 3819 7.807977 TCCATCAGAAGGAAAAATATAGTGC 57.192 36.000 0.00 0.00 30.71 4.40
3813 3831 3.054139 CCCTCACAATTCCATCAGAAGGA 60.054 47.826 0.00 0.00 38.07 3.36
3814 3832 3.285484 CCCTCACAATTCCATCAGAAGG 58.715 50.000 0.00 0.00 38.07 3.46
3815 3833 3.960571 ACCCTCACAATTCCATCAGAAG 58.039 45.455 0.00 0.00 38.07 2.85
3816 3834 5.439721 CATACCCTCACAATTCCATCAGAA 58.560 41.667 0.00 0.00 39.32 3.02
3817 3835 4.141413 CCATACCCTCACAATTCCATCAGA 60.141 45.833 0.00 0.00 0.00 3.27
3818 3836 4.139786 CCATACCCTCACAATTCCATCAG 58.860 47.826 0.00 0.00 0.00 2.90
3819 3837 3.785325 TCCATACCCTCACAATTCCATCA 59.215 43.478 0.00 0.00 0.00 3.07
3820 3838 4.137543 GTCCATACCCTCACAATTCCATC 58.862 47.826 0.00 0.00 0.00 3.51
3821 3839 3.527253 TGTCCATACCCTCACAATTCCAT 59.473 43.478 0.00 0.00 0.00 3.41
3822 3840 2.916269 TGTCCATACCCTCACAATTCCA 59.084 45.455 0.00 0.00 0.00 3.53
3823 3841 3.644966 TGTCCATACCCTCACAATTCC 57.355 47.619 0.00 0.00 0.00 3.01
3824 3842 3.694566 GGTTGTCCATACCCTCACAATTC 59.305 47.826 0.00 0.00 31.65 2.17
3825 3843 3.075283 TGGTTGTCCATACCCTCACAATT 59.925 43.478 0.00 0.00 39.03 2.32
3826 3844 2.647299 TGGTTGTCCATACCCTCACAAT 59.353 45.455 0.00 0.00 39.03 2.71
3827 3845 2.058705 TGGTTGTCCATACCCTCACAA 58.941 47.619 0.00 0.00 39.03 3.33
3828 3846 1.735926 TGGTTGTCCATACCCTCACA 58.264 50.000 0.00 0.00 39.03 3.58
3829 3847 2.433436 GTTGGTTGTCCATACCCTCAC 58.567 52.381 0.00 0.00 43.91 3.51
3830 3848 1.353022 GGTTGGTTGTCCATACCCTCA 59.647 52.381 0.00 0.00 43.91 3.86
3831 3849 1.353022 TGGTTGGTTGTCCATACCCTC 59.647 52.381 12.39 0.00 43.91 4.30
3832 3850 1.451449 TGGTTGGTTGTCCATACCCT 58.549 50.000 12.39 0.00 43.91 4.34
3833 3851 2.525105 ATGGTTGGTTGTCCATACCC 57.475 50.000 12.39 4.63 43.91 3.69
3834 3852 6.208599 CCATATTATGGTTGGTTGTCCATACC 59.791 42.308 13.70 9.79 43.57 2.73
3835 3853 7.214467 CCATATTATGGTTGGTTGTCCATAC 57.786 40.000 13.70 0.00 43.57 2.39
3850 3868 7.443272 TCTTCATCACTGCAGAACCATATTATG 59.557 37.037 23.35 3.82 0.00 1.90
3851 3869 7.512130 TCTTCATCACTGCAGAACCATATTAT 58.488 34.615 23.35 0.00 0.00 1.28
3852 3870 6.888105 TCTTCATCACTGCAGAACCATATTA 58.112 36.000 23.35 0.00 0.00 0.98
3853 3871 5.748402 TCTTCATCACTGCAGAACCATATT 58.252 37.500 23.35 0.00 0.00 1.28
3854 3872 5.363562 TCTTCATCACTGCAGAACCATAT 57.636 39.130 23.35 1.17 0.00 1.78
3855 3873 4.824479 TCTTCATCACTGCAGAACCATA 57.176 40.909 23.35 0.34 0.00 2.74
3856 3874 3.708403 TCTTCATCACTGCAGAACCAT 57.292 42.857 23.35 3.13 0.00 3.55
3878 3896 4.743057 AGATCTGTGTATAAGCTGCACA 57.257 40.909 1.02 11.41 46.55 4.57
3910 3928 1.967319 ACCAACCTGCTAACTGTGTG 58.033 50.000 0.00 0.00 0.00 3.82
3915 3933 3.577805 ACAGAAACCAACCTGCTAACT 57.422 42.857 0.00 0.00 33.90 2.24
3916 3934 3.380320 ACAACAGAAACCAACCTGCTAAC 59.620 43.478 0.00 0.00 33.90 2.34
4008 4026 2.656947 TACCTTTGCTGTTCCTTGCT 57.343 45.000 0.00 0.00 0.00 3.91
4009 4027 3.367395 GGAATACCTTTGCTGTTCCTTGC 60.367 47.826 0.00 0.00 36.32 4.01
4010 4028 3.826157 TGGAATACCTTTGCTGTTCCTTG 59.174 43.478 0.00 0.00 39.21 3.61
4012 4030 3.690460 CTGGAATACCTTTGCTGTTCCT 58.310 45.455 0.00 0.00 39.21 3.36
4014 4032 3.084786 AGCTGGAATACCTTTGCTGTTC 58.915 45.455 0.00 0.00 36.91 3.18
4016 4034 2.887151 AGCTGGAATACCTTTGCTGT 57.113 45.000 0.00 0.00 36.91 4.40
4017 4035 3.629398 CCTTAGCTGGAATACCTTTGCTG 59.371 47.826 0.00 0.00 37.96 4.41
4020 4038 4.164221 TCTCCCTTAGCTGGAATACCTTTG 59.836 45.833 0.00 0.00 37.04 2.77
4022 4040 3.970640 CTCTCCCTTAGCTGGAATACCTT 59.029 47.826 0.00 0.00 37.04 3.50
4023 4041 3.207777 TCTCTCCCTTAGCTGGAATACCT 59.792 47.826 0.00 0.00 37.04 3.08
4025 4043 4.279922 GTCTCTCTCCCTTAGCTGGAATAC 59.720 50.000 0.00 0.00 0.00 1.89
4026 4044 4.079154 TGTCTCTCTCCCTTAGCTGGAATA 60.079 45.833 0.00 0.00 0.00 1.75
4027 4045 3.304829 GTCTCTCTCCCTTAGCTGGAAT 58.695 50.000 0.00 0.00 0.00 3.01
4028 4046 2.043115 TGTCTCTCTCCCTTAGCTGGAA 59.957 50.000 0.00 0.00 0.00 3.53
4029 4047 1.641192 TGTCTCTCTCCCTTAGCTGGA 59.359 52.381 0.00 0.00 0.00 3.86
4030 4048 2.151502 TGTCTCTCTCCCTTAGCTGG 57.848 55.000 0.00 0.00 0.00 4.85
4031 4049 3.740764 GCATTGTCTCTCTCCCTTAGCTG 60.741 52.174 0.00 0.00 0.00 4.24
4032 4050 2.433970 GCATTGTCTCTCTCCCTTAGCT 59.566 50.000 0.00 0.00 0.00 3.32
4034 4052 4.261994 GCTAGCATTGTCTCTCTCCCTTAG 60.262 50.000 10.63 0.00 0.00 2.18
4035 4053 3.639094 GCTAGCATTGTCTCTCTCCCTTA 59.361 47.826 10.63 0.00 0.00 2.69
4076 4098 6.661304 AGAATGAAGCTGAAAGACCATTTT 57.339 33.333 0.00 0.00 34.07 1.82
4080 4102 7.231317 ACAAAATAGAATGAAGCTGAAAGACCA 59.769 33.333 0.00 0.00 34.07 4.02
4081 4103 7.540055 CACAAAATAGAATGAAGCTGAAAGACC 59.460 37.037 0.00 0.00 34.07 3.85
4087 4109 6.240894 ACCTCACAAAATAGAATGAAGCTGA 58.759 36.000 0.00 0.00 0.00 4.26
4089 4111 8.680903 CAATACCTCACAAAATAGAATGAAGCT 58.319 33.333 0.00 0.00 0.00 3.74
4107 4129 5.235186 CACAATGTAGTAGCAGCAATACCTC 59.765 44.000 0.00 0.00 0.00 3.85
4115 4137 3.002791 TGAAGCACAATGTAGTAGCAGC 58.997 45.455 0.00 0.00 0.00 5.25
4155 4177 7.202526 ACAAGATTTGAAGCTTTCGATTGAAA 58.797 30.769 0.00 7.89 41.69 2.69
4156 4178 6.738114 ACAAGATTTGAAGCTTTCGATTGAA 58.262 32.000 0.00 0.00 31.24 2.69
4157 4179 6.317789 ACAAGATTTGAAGCTTTCGATTGA 57.682 33.333 0.00 0.00 31.24 2.57
4158 4180 6.998258 AACAAGATTTGAAGCTTTCGATTG 57.002 33.333 0.00 4.64 31.24 2.67
4159 4181 9.346725 GAATAACAAGATTTGAAGCTTTCGATT 57.653 29.630 0.00 0.00 31.24 3.34
4160 4182 7.970614 GGAATAACAAGATTTGAAGCTTTCGAT 59.029 33.333 0.00 0.00 31.24 3.59
4161 4183 7.040755 TGGAATAACAAGATTTGAAGCTTTCGA 60.041 33.333 0.00 0.00 31.24 3.71
4162 4184 7.083858 TGGAATAACAAGATTTGAAGCTTTCG 58.916 34.615 0.00 0.00 31.24 3.46
4163 4185 8.992835 ATGGAATAACAAGATTTGAAGCTTTC 57.007 30.769 0.00 0.00 31.24 2.62


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.