Multiple sequence alignment - TraesCS6B01G068100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G068100 chr6B 100.000 2867 0 0 1 2867 46071321 46074187 0.000000e+00 5295.0
1 TraesCS6B01G068100 chr6B 94.483 1595 84 3 1013 2603 46092881 46094475 0.000000e+00 2455.0
2 TraesCS6B01G068100 chr6B 91.411 1502 119 6 1003 2494 45983468 45984969 0.000000e+00 2050.0
3 TraesCS6B01G068100 chr6B 90.596 1510 119 14 1003 2496 46390217 46391719 0.000000e+00 1980.0
4 TraesCS6B01G068100 chr6B 94.481 761 25 5 679 1423 46026410 46027169 0.000000e+00 1157.0
5 TraesCS6B01G068100 chr6B 88.494 478 51 3 2135 2610 46081997 46082472 2.480000e-160 575.0
6 TraesCS6B01G068100 chr6B 87.088 364 32 5 1 355 46089006 46089363 5.760000e-107 398.0
7 TraesCS6B01G068100 chr6B 86.758 219 15 6 384 589 46024989 46025206 6.180000e-57 231.0
8 TraesCS6B01G068100 chr6B 78.857 350 37 13 2 342 46024675 46024996 4.840000e-48 202.0
9 TraesCS6B01G068100 chr6B 92.500 80 6 0 675 754 45982924 45983003 6.490000e-22 115.0
10 TraesCS6B01G068100 chr6B 87.500 96 8 2 588 679 234017239 234017144 1.090000e-19 108.0
11 TraesCS6B01G068100 chr6B 86.538 104 6 3 587 682 652642544 652642441 1.090000e-19 108.0
12 TraesCS6B01G068100 chr6B 86.139 101 11 3 580 679 461267526 461267624 3.910000e-19 106.0
13 TraesCS6B01G068100 chr6B 100.000 28 0 0 2590 2617 46073971 46073998 5.000000e-03 52.8
14 TraesCS6B01G068100 chr6A 92.265 1603 116 6 1015 2609 26718002 26719604 0.000000e+00 2266.0
15 TraesCS6B01G068100 chr6A 91.108 1507 115 9 1003 2496 26734253 26735753 0.000000e+00 2023.0
16 TraesCS6B01G068100 chr6A 88.858 359 30 6 1 349 26714567 26714925 1.580000e-117 433.0
17 TraesCS6B01G068100 chrUn 90.536 1511 119 12 1003 2496 95385340 95386843 0.000000e+00 1977.0
18 TraesCS6B01G068100 chrUn 93.750 80 5 0 675 754 95314861 95314940 1.400000e-23 121.0
19 TraesCS6B01G068100 chr5B 88.889 99 5 5 587 679 415143433 415143335 1.800000e-22 117.0
20 TraesCS6B01G068100 chr5A 75.829 211 48 3 174 382 299057493 299057702 1.410000e-18 104.0
21 TraesCS6B01G068100 chr5D 86.000 100 6 5 588 679 349781060 349780961 1.820000e-17 100.0
22 TraesCS6B01G068100 chr5D 82.828 99 14 2 582 679 133301485 133301581 5.090000e-13 86.1
23 TraesCS6B01G068100 chr5D 90.698 43 4 0 2 44 551542474 551542432 1.110000e-04 58.4
24 TraesCS6B01G068100 chr7B 85.859 99 6 4 588 679 694791958 694792055 6.540000e-17 99.0
25 TraesCS6B01G068100 chr6D 84.314 102 13 3 2654 2753 107977790 107977690 2.350000e-16 97.1
26 TraesCS6B01G068100 chr3B 81.148 122 20 3 2686 2806 130132048 130132167 8.460000e-16 95.3
27 TraesCS6B01G068100 chr2D 83.495 103 9 6 583 679 510567570 510567470 3.930000e-14 89.8
28 TraesCS6B01G068100 chr1A 83.333 102 9 5 586 679 99204425 99204324 1.420000e-13 87.9
29 TraesCS6B01G068100 chr2A 79.646 113 19 4 207 317 16990275 16990385 8.520000e-11 78.7
30 TraesCS6B01G068100 chr2B 81.818 88 12 4 232 317 26711699 26711784 1.430000e-08 71.3
31 TraesCS6B01G068100 chr2B 80.682 88 13 4 232 317 26732342 26732427 6.630000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G068100 chr6B 46071321 46074187 2866 False 2673.9 5295 100.000000 1 2867 2 chr6B.!!$F6 2866
1 TraesCS6B01G068100 chr6B 46390217 46391719 1502 False 1980.0 1980 90.596000 1003 2496 1 chr6B.!!$F2 1493
2 TraesCS6B01G068100 chr6B 46089006 46094475 5469 False 1426.5 2455 90.785500 1 2603 2 chr6B.!!$F7 2602
3 TraesCS6B01G068100 chr6B 45982924 45984969 2045 False 1082.5 2050 91.955500 675 2494 2 chr6B.!!$F4 1819
4 TraesCS6B01G068100 chr6B 46024675 46027169 2494 False 530.0 1157 86.698667 2 1423 3 chr6B.!!$F5 1421
5 TraesCS6B01G068100 chr6A 26734253 26735753 1500 False 2023.0 2023 91.108000 1003 2496 1 chr6A.!!$F1 1493
6 TraesCS6B01G068100 chr6A 26714567 26719604 5037 False 1349.5 2266 90.561500 1 2609 2 chr6A.!!$F2 2608
7 TraesCS6B01G068100 chrUn 95385340 95386843 1503 False 1977.0 1977 90.536000 1003 2496 1 chrUn.!!$F2 1493

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
258 268 1.066152 GGCGCCTTTCAAATGAGGATC 59.934 52.381 22.15 0.00 34.91 3.36 F
259 269 1.066152 GCGCCTTTCAAATGAGGATCC 59.934 52.381 2.48 2.48 34.91 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1864 7120 2.478890 GCGCTAGCTCGGTGGTCTA 61.479 63.158 13.93 0.0 41.01 2.59 R
2518 7790 6.065374 TGGTTTACAAGGTGAAGAATGCTTA 58.935 36.000 0.00 0.0 33.61 3.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
155 165 7.891561 TGTTCTATTTCGGAAAATCCAATGTT 58.108 30.769 7.33 0.00 35.91 2.71
160 170 3.226777 TCGGAAAATCCAATGTTGTGGT 58.773 40.909 0.00 0.00 39.88 4.16
164 174 4.216687 GGAAAATCCAATGTTGTGGTCGTA 59.783 41.667 0.00 0.00 39.88 3.43
172 182 5.391523 CCAATGTTGTGGTCGTACAATAAGG 60.392 44.000 0.00 6.57 42.02 2.69
173 183 3.068560 TGTTGTGGTCGTACAATAAGGC 58.931 45.455 0.00 0.00 42.02 4.35
194 204 2.479389 CGACTTGTTTGGTTGTGCACAT 60.479 45.455 22.39 0.23 0.00 3.21
245 255 4.085357 TCTGATACATTATTGGCGCCTT 57.915 40.909 29.70 17.74 0.00 4.35
248 258 4.203226 TGATACATTATTGGCGCCTTTCA 58.797 39.130 29.70 13.00 0.00 2.69
251 261 4.470334 ACATTATTGGCGCCTTTCAAAT 57.530 36.364 29.70 20.21 0.00 2.32
258 268 1.066152 GGCGCCTTTCAAATGAGGATC 59.934 52.381 22.15 0.00 34.91 3.36
259 269 1.066152 GCGCCTTTCAAATGAGGATCC 59.934 52.381 2.48 2.48 34.91 3.36
276 286 8.931904 TGAGGATCCAAAATATATCAGGGATA 57.068 34.615 15.82 0.00 35.39 2.59
293 304 5.070981 CAGGGATAATTGAGAGAAGTGCCTA 59.929 44.000 0.00 0.00 0.00 3.93
319 330 2.884639 GTTGGAAAGGCAAGTTGCTCTA 59.115 45.455 26.16 12.12 44.28 2.43
349 360 6.043854 AGGAAGACTTGTTCTATCAACTCC 57.956 41.667 0.00 0.00 32.51 3.85
366 1561 1.195448 CTCCGTGCTCACAAACATGAC 59.805 52.381 0.00 0.00 0.00 3.06
372 1567 1.728971 GCTCACAAACATGACTCTCCG 59.271 52.381 0.00 0.00 0.00 4.63
375 1570 4.169508 CTCACAAACATGACTCTCCGTAG 58.830 47.826 0.00 0.00 0.00 3.51
397 1592 6.821616 AGGATCTCATTGTTCTACTTCCAT 57.178 37.500 0.00 0.00 0.00 3.41
400 1595 7.786943 AGGATCTCATTGTTCTACTTCCATAGA 59.213 37.037 0.00 0.00 0.00 1.98
422 1617 4.722052 GCGTTTTGCAAAGAATCGATAC 57.278 40.909 22.20 12.09 45.45 2.24
447 1642 2.643551 TCAGATCCGGATTTTCCTTGC 58.356 47.619 20.22 2.59 33.30 4.01
465 1660 4.493547 CTTGCCAAAGTGACAGTGAAAAA 58.506 39.130 0.00 0.00 0.00 1.94
505 1701 1.903404 GTGGCACAACCTTGAGGGG 60.903 63.158 13.86 0.00 44.16 4.79
506 1702 2.081787 TGGCACAACCTTGAGGGGA 61.082 57.895 1.54 0.00 40.22 4.81
583 1809 1.079543 GTCAGACACGCAGAGCCAT 60.080 57.895 0.00 0.00 0.00 4.40
591 1817 3.458189 ACACGCAGAGCCATTAATACTC 58.542 45.455 8.85 8.85 0.00 2.59
592 1818 2.802816 CACGCAGAGCCATTAATACTCC 59.197 50.000 12.00 1.13 0.00 3.85
594 1820 2.037772 CGCAGAGCCATTAATACTCCCT 59.962 50.000 12.00 0.00 0.00 4.20
595 1821 3.669536 GCAGAGCCATTAATACTCCCTC 58.330 50.000 12.00 3.99 0.00 4.30
597 1823 2.900546 AGAGCCATTAATACTCCCTCCG 59.099 50.000 12.00 0.00 0.00 4.63
600 1826 3.071167 AGCCATTAATACTCCCTCCGTTC 59.929 47.826 0.00 0.00 0.00 3.95
601 1827 3.650139 CCATTAATACTCCCTCCGTTCG 58.350 50.000 0.00 0.00 0.00 3.95
604 1830 1.856629 AATACTCCCTCCGTTCGGAA 58.143 50.000 14.79 0.00 33.41 4.30
605 1831 1.856629 ATACTCCCTCCGTTCGGAAA 58.143 50.000 14.79 3.49 33.41 3.13
606 1832 1.856629 TACTCCCTCCGTTCGGAAAT 58.143 50.000 14.79 2.39 33.41 2.17
607 1833 1.856629 ACTCCCTCCGTTCGGAAATA 58.143 50.000 14.79 2.82 33.41 1.40
608 1834 1.479730 ACTCCCTCCGTTCGGAAATAC 59.520 52.381 14.79 0.00 33.41 1.89
609 1835 1.755380 CTCCCTCCGTTCGGAAATACT 59.245 52.381 14.79 0.00 33.41 2.12
610 1836 2.167900 CTCCCTCCGTTCGGAAATACTT 59.832 50.000 14.79 0.00 33.41 2.24
612 1838 2.354403 CCCTCCGTTCGGAAATACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
613 1839 2.928116 CCTCCGTTCGGAAATACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
614 1840 2.597305 CTCCGTTCGGAAATACTTGTCG 59.403 50.000 14.79 0.00 33.41 4.35
615 1841 1.657094 CCGTTCGGAAATACTTGTCGG 59.343 52.381 5.19 0.00 0.00 4.79
617 1843 2.343544 CGTTCGGAAATACTTGTCGGAC 59.656 50.000 0.00 0.00 0.00 4.79
618 1844 2.267188 TCGGAAATACTTGTCGGACG 57.733 50.000 3.34 0.00 0.00 4.79
619 1845 1.811965 TCGGAAATACTTGTCGGACGA 59.188 47.619 3.34 0.15 0.00 4.20
620 1846 2.228582 TCGGAAATACTTGTCGGACGAA 59.771 45.455 3.34 0.00 0.00 3.85
621 1847 3.119388 TCGGAAATACTTGTCGGACGAAT 60.119 43.478 3.34 0.00 0.00 3.34
622 1848 3.000078 CGGAAATACTTGTCGGACGAATG 60.000 47.826 3.34 0.00 0.00 2.67
623 1849 3.308866 GGAAATACTTGTCGGACGAATGG 59.691 47.826 3.34 0.00 0.00 3.16
624 1850 3.880047 AATACTTGTCGGACGAATGGA 57.120 42.857 3.34 0.00 0.00 3.41
625 1851 4.402056 AATACTTGTCGGACGAATGGAT 57.598 40.909 3.34 0.00 0.00 3.41
626 1852 2.010145 ACTTGTCGGACGAATGGATG 57.990 50.000 3.34 0.00 0.00 3.51
627 1853 1.275291 ACTTGTCGGACGAATGGATGT 59.725 47.619 3.34 0.00 0.00 3.06
629 1855 3.132289 ACTTGTCGGACGAATGGATGTAT 59.868 43.478 3.34 0.00 0.00 2.29
630 1856 3.364889 TGTCGGACGAATGGATGTATC 57.635 47.619 3.34 0.00 0.00 2.24
632 1858 4.139038 TGTCGGACGAATGGATGTATCTA 58.861 43.478 3.34 0.00 0.00 1.98
634 1860 4.454847 GTCGGACGAATGGATGTATCTAGA 59.545 45.833 0.00 0.00 0.00 2.43
635 1861 4.454847 TCGGACGAATGGATGTATCTAGAC 59.545 45.833 0.00 0.00 0.00 2.59
637 1863 4.215827 GGACGAATGGATGTATCTAGACGT 59.784 45.833 0.00 10.31 36.43 4.34
638 1864 5.410746 GGACGAATGGATGTATCTAGACGTA 59.589 44.000 0.00 0.00 35.00 3.57
641 1867 8.557592 ACGAATGGATGTATCTAGACGTATTA 57.442 34.615 0.00 0.00 33.94 0.98
644 1870 8.880991 AATGGATGTATCTAGACGTATTAGGT 57.119 34.615 0.00 0.00 0.00 3.08
645 1871 9.970553 AATGGATGTATCTAGACGTATTAGGTA 57.029 33.333 0.00 0.00 0.00 3.08
647 1873 8.377799 TGGATGTATCTAGACGTATTAGGTACA 58.622 37.037 23.92 23.92 44.46 2.90
792 5098 2.866762 GCCTGAATAAACCTGACTAGCG 59.133 50.000 0.00 0.00 0.00 4.26
2440 7711 2.289072 ACGGATGTGTGGAAGTCTTCAG 60.289 50.000 14.49 0.00 0.00 3.02
2496 7768 8.634335 AAATTAAAATATTTTGCAAGCCACCT 57.366 26.923 21.19 0.00 0.00 4.00
2499 7771 5.425196 AAATATTTTGCAAGCCACCTCAT 57.575 34.783 0.00 0.00 0.00 2.90
2510 7782 5.625197 GCAAGCCACCTCATGTCATTATTTT 60.625 40.000 0.00 0.00 0.00 1.82
2515 7787 7.781693 AGCCACCTCATGTCATTATTTTCTTAT 59.218 33.333 0.00 0.00 0.00 1.73
2545 7817 5.528870 CATTCTTCACCTTGTAAACCAACC 58.471 41.667 0.00 0.00 0.00 3.77
2548 7820 3.935818 TCACCTTGTAAACCAACCTGA 57.064 42.857 0.00 0.00 0.00 3.86
2558 7830 4.525912 AAACCAACCTGAGATTGAATGC 57.474 40.909 0.00 0.00 0.00 3.56
2562 7834 4.946157 ACCAACCTGAGATTGAATGCTTAG 59.054 41.667 0.00 0.00 0.00 2.18
2573 7845 4.574674 TGAATGCTTAGGAGGACAATGT 57.425 40.909 0.00 0.00 0.00 2.71
2579 7851 6.313519 TGCTTAGGAGGACAATGTTATCTT 57.686 37.500 0.00 0.00 0.00 2.40
2582 7854 6.258947 GCTTAGGAGGACAATGTTATCTTCAC 59.741 42.308 0.00 0.00 0.00 3.18
2584 7856 3.871594 GGAGGACAATGTTATCTTCACCG 59.128 47.826 0.00 0.00 0.00 4.94
2585 7857 3.270877 AGGACAATGTTATCTTCACCGC 58.729 45.455 0.00 0.00 0.00 5.68
2587 7859 3.181510 GGACAATGTTATCTTCACCGCAC 60.182 47.826 0.00 0.00 0.00 5.34
2603 7876 1.272490 CGCACCAGAGTTCAAGTCCTA 59.728 52.381 0.00 0.00 0.00 2.94
2609 7882 3.194542 CCAGAGTTCAAGTCCTAGACTGG 59.805 52.174 0.00 0.00 42.59 4.00
2610 7883 4.082845 CAGAGTTCAAGTCCTAGACTGGA 58.917 47.826 0.00 0.00 42.59 3.86
2618 7891 2.217510 TCCTAGACTGGACACTGGAC 57.782 55.000 0.00 0.00 0.00 4.02
2619 7892 1.187087 CCTAGACTGGACACTGGACC 58.813 60.000 0.00 0.00 0.00 4.46
2620 7893 0.811915 CTAGACTGGACACTGGACCG 59.188 60.000 0.00 0.00 0.00 4.79
2621 7894 0.611062 TAGACTGGACACTGGACCGG 60.611 60.000 0.00 0.00 40.52 5.28
2622 7895 2.923035 ACTGGACACTGGACCGGG 60.923 66.667 6.32 0.00 39.23 5.73
2623 7896 4.394712 CTGGACACTGGACCGGGC 62.395 72.222 6.32 0.21 32.39 6.13
2625 7898 3.948719 GGACACTGGACCGGGCAA 61.949 66.667 11.00 0.00 0.00 4.52
2626 7899 2.668550 GACACTGGACCGGGCAAC 60.669 66.667 11.00 0.00 0.00 4.17
2627 7900 4.619227 ACACTGGACCGGGCAACG 62.619 66.667 11.00 0.00 43.80 4.10
2638 7911 3.343421 GGCAACGACGACGGCTTT 61.343 61.111 12.58 0.00 44.46 3.51
2639 7912 2.127758 GCAACGACGACGGCTTTG 60.128 61.111 15.11 15.11 44.46 2.77
2640 7913 2.877974 GCAACGACGACGGCTTTGT 61.878 57.895 19.66 0.00 44.46 2.83
2641 7914 1.200839 CAACGACGACGGCTTTGTC 59.799 57.895 11.54 1.35 44.46 3.18
2642 7915 1.066918 AACGACGACGGCTTTGTCT 59.933 52.632 12.58 0.00 44.46 3.41
2643 7916 1.213094 AACGACGACGGCTTTGTCTG 61.213 55.000 12.58 5.92 44.46 3.51
2644 7917 1.371267 CGACGACGGCTTTGTCTGA 60.371 57.895 9.42 0.00 36.54 3.27
2645 7918 0.937699 CGACGACGGCTTTGTCTGAA 60.938 55.000 9.42 0.00 36.54 3.02
2646 7919 1.214367 GACGACGGCTTTGTCTGAAA 58.786 50.000 4.20 0.00 35.86 2.69
2647 7920 1.595794 GACGACGGCTTTGTCTGAAAA 59.404 47.619 4.20 0.00 35.86 2.29
2648 7921 2.011222 ACGACGGCTTTGTCTGAAAAA 58.989 42.857 0.00 0.00 36.71 1.94
2670 7943 5.476091 AAAGAGTTCAAGTCCTAGACTGG 57.524 43.478 0.00 0.00 42.59 4.00
2671 7944 4.390129 AGAGTTCAAGTCCTAGACTGGA 57.610 45.455 0.00 0.00 42.59 3.86
2679 7952 1.924731 TCCTAGACTGGACACTGGTG 58.075 55.000 0.00 0.00 0.00 4.17
2681 7954 1.971357 CCTAGACTGGACACTGGTGTT 59.029 52.381 7.82 0.00 45.05 3.32
2682 7955 2.028930 CCTAGACTGGACACTGGTGTTC 60.029 54.545 7.82 6.52 45.05 3.18
2683 7956 0.389391 AGACTGGACACTGGTGTTCG 59.611 55.000 7.82 5.40 45.05 3.95
2684 7957 0.104304 GACTGGACACTGGTGTTCGT 59.896 55.000 7.82 8.23 45.05 3.85
2685 7958 1.338973 GACTGGACACTGGTGTTCGTA 59.661 52.381 7.82 0.00 45.05 3.43
2686 7959 1.968493 ACTGGACACTGGTGTTCGTAT 59.032 47.619 7.82 0.00 45.05 3.06
2687 7960 2.367567 ACTGGACACTGGTGTTCGTATT 59.632 45.455 7.82 0.00 45.05 1.89
2688 7961 3.181458 ACTGGACACTGGTGTTCGTATTT 60.181 43.478 7.82 0.00 45.05 1.40
2689 7962 3.811083 TGGACACTGGTGTTCGTATTTT 58.189 40.909 7.82 0.00 45.05 1.82
2690 7963 4.200874 TGGACACTGGTGTTCGTATTTTT 58.799 39.130 7.82 0.00 45.05 1.94
2691 7964 4.273969 TGGACACTGGTGTTCGTATTTTTC 59.726 41.667 7.82 0.00 45.05 2.29
2692 7965 4.273969 GGACACTGGTGTTCGTATTTTTCA 59.726 41.667 7.82 0.00 45.05 2.69
2693 7966 5.048991 GGACACTGGTGTTCGTATTTTTCAT 60.049 40.000 7.82 0.00 45.05 2.57
2694 7967 6.385649 ACACTGGTGTTCGTATTTTTCATT 57.614 33.333 0.01 0.00 41.83 2.57
2695 7968 7.308109 GGACACTGGTGTTCGTATTTTTCATTA 60.308 37.037 7.82 0.00 45.05 1.90
2696 7969 8.106247 ACACTGGTGTTCGTATTTTTCATTAT 57.894 30.769 0.01 0.00 41.83 1.28
2697 7970 8.573035 ACACTGGTGTTCGTATTTTTCATTATT 58.427 29.630 0.01 0.00 41.83 1.40
2698 7971 9.405587 CACTGGTGTTCGTATTTTTCATTATTT 57.594 29.630 0.00 0.00 0.00 1.40
2716 7989 9.781834 TCATTATTTATTTCACACCTTTTAGCG 57.218 29.630 0.00 0.00 0.00 4.26
2717 7990 9.781834 CATTATTTATTTCACACCTTTTAGCGA 57.218 29.630 0.00 0.00 0.00 4.93
2719 7992 9.781834 TTATTTATTTCACACCTTTTAGCGATG 57.218 29.630 0.00 0.00 0.00 3.84
2720 7993 6.811253 TTATTTCACACCTTTTAGCGATGT 57.189 33.333 0.00 0.00 0.00 3.06
2721 7994 7.908827 TTATTTCACACCTTTTAGCGATGTA 57.091 32.000 0.00 0.00 0.00 2.29
2722 7995 5.600908 TTTCACACCTTTTAGCGATGTAC 57.399 39.130 0.00 0.00 0.00 2.90
2723 7996 3.247442 TCACACCTTTTAGCGATGTACG 58.753 45.455 0.00 0.00 45.66 3.67
2724 7997 2.991190 CACACCTTTTAGCGATGTACGT 59.009 45.455 0.00 0.00 44.60 3.57
2725 7998 3.430895 CACACCTTTTAGCGATGTACGTT 59.569 43.478 0.00 0.00 44.60 3.99
2726 7999 3.676646 ACACCTTTTAGCGATGTACGTTC 59.323 43.478 0.00 0.00 44.60 3.95
2727 8000 3.676172 CACCTTTTAGCGATGTACGTTCA 59.324 43.478 0.00 0.00 44.60 3.18
2728 8001 3.924686 ACCTTTTAGCGATGTACGTTCAG 59.075 43.478 0.00 0.00 44.60 3.02
2729 8002 3.924686 CCTTTTAGCGATGTACGTTCAGT 59.075 43.478 0.00 0.00 44.60 3.41
2730 8003 4.201589 CCTTTTAGCGATGTACGTTCAGTG 60.202 45.833 0.00 0.00 44.60 3.66
2731 8004 3.835378 TTAGCGATGTACGTTCAGTGA 57.165 42.857 0.00 0.00 44.60 3.41
2732 8005 2.717580 AGCGATGTACGTTCAGTGAA 57.282 45.000 0.08 0.08 44.60 3.18
2733 8006 3.021269 AGCGATGTACGTTCAGTGAAA 57.979 42.857 7.25 0.00 44.60 2.69
2734 8007 2.987149 AGCGATGTACGTTCAGTGAAAG 59.013 45.455 16.05 16.05 44.60 2.62
2735 8008 2.984471 GCGATGTACGTTCAGTGAAAGA 59.016 45.455 23.14 3.73 44.60 2.52
2736 8009 3.427528 GCGATGTACGTTCAGTGAAAGAA 59.572 43.478 23.14 10.05 44.60 2.52
2737 8010 4.433022 GCGATGTACGTTCAGTGAAAGAAG 60.433 45.833 23.14 10.65 44.60 2.85
2738 8011 4.915667 CGATGTACGTTCAGTGAAAGAAGA 59.084 41.667 23.14 7.99 37.22 2.87
2739 8012 5.164177 CGATGTACGTTCAGTGAAAGAAGAC 60.164 44.000 23.14 16.90 37.22 3.01
2740 8013 4.039703 TGTACGTTCAGTGAAAGAAGACG 58.960 43.478 23.14 16.64 0.00 4.18
2741 8014 3.160777 ACGTTCAGTGAAAGAAGACGT 57.839 42.857 23.14 17.26 0.00 4.34
2742 8015 3.518590 ACGTTCAGTGAAAGAAGACGTT 58.481 40.909 23.14 4.44 27.64 3.99
2743 8016 3.930848 ACGTTCAGTGAAAGAAGACGTTT 59.069 39.130 23.14 0.00 27.64 3.60
2744 8017 4.390909 ACGTTCAGTGAAAGAAGACGTTTT 59.609 37.500 23.14 0.00 27.64 2.43
2745 8018 4.956184 CGTTCAGTGAAAGAAGACGTTTTC 59.044 41.667 12.86 10.70 34.64 2.29
2761 8034 5.687357 CGTTTTCGTCGACTACAAAAATG 57.313 39.130 14.70 14.52 38.65 2.32
2762 8035 5.192496 CGTTTTCGTCGACTACAAAAATGT 58.808 37.500 14.70 0.00 38.65 2.71
2763 8036 5.332594 CGTTTTCGTCGACTACAAAAATGTC 59.667 40.000 14.70 3.96 38.65 3.06
2764 8037 6.416514 GTTTTCGTCGACTACAAAAATGTCT 58.583 36.000 14.70 0.00 0.00 3.41
2765 8038 7.558137 GTTTTCGTCGACTACAAAAATGTCTA 58.442 34.615 14.70 0.00 0.00 2.59
2766 8039 7.878477 TTTCGTCGACTACAAAAATGTCTAT 57.122 32.000 14.70 0.00 0.00 1.98
2767 8040 7.878477 TTCGTCGACTACAAAAATGTCTATT 57.122 32.000 14.70 0.00 0.00 1.73
2768 8041 7.878477 TCGTCGACTACAAAAATGTCTATTT 57.122 32.000 14.70 0.00 38.11 1.40
2769 8042 7.726079 TCGTCGACTACAAAAATGTCTATTTG 58.274 34.615 14.70 0.00 41.24 2.32
2770 8043 6.461698 CGTCGACTACAAAAATGTCTATTTGC 59.538 38.462 14.70 0.00 39.55 3.68
2771 8044 6.461698 GTCGACTACAAAAATGTCTATTTGCG 59.538 38.462 8.70 0.00 39.55 4.85
2772 8045 6.366604 TCGACTACAAAAATGTCTATTTGCGA 59.633 34.615 0.00 0.00 39.55 5.10
2773 8046 7.012943 CGACTACAAAAATGTCTATTTGCGAA 58.987 34.615 0.00 0.00 39.55 4.70
2774 8047 7.692291 CGACTACAAAAATGTCTATTTGCGAAT 59.308 33.333 4.21 4.21 39.55 3.34
2775 8048 9.341899 GACTACAAAAATGTCTATTTGCGAATT 57.658 29.630 4.06 0.00 39.55 2.17
2776 8049 9.341899 ACTACAAAAATGTCTATTTGCGAATTC 57.658 29.630 4.06 0.00 39.55 2.17
2777 8050 7.264448 ACAAAAATGTCTATTTGCGAATTCG 57.736 32.000 23.34 23.34 39.55 3.34
2778 8051 6.861055 ACAAAAATGTCTATTTGCGAATTCGT 59.139 30.769 27.24 11.44 39.55 3.85
2779 8052 7.060633 ACAAAAATGTCTATTTGCGAATTCGTC 59.939 33.333 27.24 19.61 39.55 4.20
2780 8053 5.794687 AATGTCTATTTGCGAATTCGTCA 57.205 34.783 27.24 21.73 42.22 4.35
2781 8054 5.794687 ATGTCTATTTGCGAATTCGTCAA 57.205 34.783 27.24 25.41 42.22 3.18
2782 8055 5.794687 TGTCTATTTGCGAATTCGTCAAT 57.205 34.783 27.24 24.24 42.22 2.57
2783 8056 5.795766 TGTCTATTTGCGAATTCGTCAATC 58.204 37.500 27.24 11.99 42.22 2.67
2784 8057 5.580691 TGTCTATTTGCGAATTCGTCAATCT 59.419 36.000 27.24 20.52 42.22 2.40
2785 8058 6.092122 TGTCTATTTGCGAATTCGTCAATCTT 59.908 34.615 27.24 18.80 42.22 2.40
2786 8059 7.276878 TGTCTATTTGCGAATTCGTCAATCTTA 59.723 33.333 27.24 18.88 42.22 2.10
2787 8060 8.276325 GTCTATTTGCGAATTCGTCAATCTTAT 58.724 33.333 27.24 20.54 42.22 1.73
2788 8061 8.275632 TCTATTTGCGAATTCGTCAATCTTATG 58.724 33.333 27.24 16.40 42.22 1.90
2789 8062 6.415798 TTTGCGAATTCGTCAATCTTATGA 57.584 33.333 27.24 12.52 42.22 2.15
2790 8063 6.603237 TTGCGAATTCGTCAATCTTATGAT 57.397 33.333 27.24 0.00 42.22 2.45
2791 8064 5.977731 TGCGAATTCGTCAATCTTATGATG 58.022 37.500 27.24 0.00 42.22 3.07
2792 8065 5.752955 TGCGAATTCGTCAATCTTATGATGA 59.247 36.000 27.24 0.00 42.17 2.92
2793 8066 6.424812 TGCGAATTCGTCAATCTTATGATGAT 59.575 34.615 27.24 0.00 43.06 2.45
2794 8067 6.735510 GCGAATTCGTCAATCTTATGATGATG 59.264 38.462 27.24 0.00 43.06 3.07
2795 8068 7.570140 GCGAATTCGTCAATCTTATGATGATGT 60.570 37.037 27.24 0.00 43.06 3.06
2796 8069 7.948895 CGAATTCGTCAATCTTATGATGATGTC 59.051 37.037 19.67 1.58 43.06 3.06
2797 8070 8.899427 AATTCGTCAATCTTATGATGATGTCT 57.101 30.769 0.50 0.00 43.06 3.41
2798 8071 7.936950 TTCGTCAATCTTATGATGATGTCTC 57.063 36.000 0.50 0.00 43.06 3.36
2799 8072 7.042797 TCGTCAATCTTATGATGATGTCTCA 57.957 36.000 0.00 0.00 39.73 3.27
2800 8073 6.920210 TCGTCAATCTTATGATGATGTCTCAC 59.080 38.462 0.00 0.00 39.73 3.51
2801 8074 6.145209 CGTCAATCTTATGATGATGTCTCACC 59.855 42.308 0.00 0.00 38.37 4.02
2802 8075 7.215789 GTCAATCTTATGATGATGTCTCACCT 58.784 38.462 0.00 0.00 33.22 4.00
2803 8076 7.384660 GTCAATCTTATGATGATGTCTCACCTC 59.615 40.741 0.00 0.00 33.22 3.85
2804 8077 6.990908 ATCTTATGATGATGTCTCACCTCA 57.009 37.500 0.00 0.00 33.22 3.86
2805 8078 6.402456 TCTTATGATGATGTCTCACCTCAG 57.598 41.667 0.00 0.00 33.22 3.35
2806 8079 5.303845 TCTTATGATGATGTCTCACCTCAGG 59.696 44.000 0.00 0.00 33.22 3.86
2807 8080 1.483827 TGATGATGTCTCACCTCAGGC 59.516 52.381 0.00 0.00 33.22 4.85
2808 8081 0.463204 ATGATGTCTCACCTCAGGCG 59.537 55.000 0.00 0.00 33.22 5.52
2809 8082 1.520342 GATGTCTCACCTCAGGCGC 60.520 63.158 0.00 0.00 0.00 6.53
2810 8083 2.914777 GATGTCTCACCTCAGGCGCC 62.915 65.000 21.89 21.89 0.00 6.53
2811 8084 3.386237 GTCTCACCTCAGGCGCCT 61.386 66.667 27.08 27.08 0.00 5.52
2812 8085 2.604686 TCTCACCTCAGGCGCCTT 60.605 61.111 30.60 10.07 0.00 4.35
2813 8086 2.435586 CTCACCTCAGGCGCCTTG 60.436 66.667 30.60 23.29 0.00 3.61
2814 8087 3.241530 TCACCTCAGGCGCCTTGT 61.242 61.111 30.60 21.58 0.00 3.16
2815 8088 2.281761 CACCTCAGGCGCCTTGTT 60.282 61.111 30.60 8.55 0.00 2.83
2816 8089 1.898574 CACCTCAGGCGCCTTGTTT 60.899 57.895 30.60 9.17 0.00 2.83
2817 8090 1.898574 ACCTCAGGCGCCTTGTTTG 60.899 57.895 30.60 17.17 0.00 2.93
2818 8091 2.629656 CCTCAGGCGCCTTGTTTGG 61.630 63.158 30.60 19.79 0.00 3.28
2819 8092 1.600636 CTCAGGCGCCTTGTTTGGA 60.601 57.895 30.60 19.16 0.00 3.53
2820 8093 1.152860 TCAGGCGCCTTGTTTGGAA 60.153 52.632 30.60 2.36 0.00 3.53
2821 8094 1.007387 CAGGCGCCTTGTTTGGAAC 60.007 57.895 30.60 0.00 0.00 3.62
2822 8095 2.200337 AGGCGCCTTGTTTGGAACC 61.200 57.895 27.08 0.00 0.00 3.62
2823 8096 2.050442 GCGCCTTGTTTGGAACCG 60.050 61.111 0.00 0.00 0.00 4.44
2824 8097 2.548295 GCGCCTTGTTTGGAACCGA 61.548 57.895 0.00 0.00 0.00 4.69
2825 8098 1.281656 CGCCTTGTTTGGAACCGAC 59.718 57.895 0.00 0.00 0.00 4.79
2826 8099 1.658114 GCCTTGTTTGGAACCGACC 59.342 57.895 0.00 0.00 0.00 4.79
2827 8100 1.946267 CCTTGTTTGGAACCGACCG 59.054 57.895 0.00 0.00 0.00 4.79
2828 8101 0.533308 CCTTGTTTGGAACCGACCGA 60.533 55.000 0.00 0.00 0.00 4.69
2829 8102 0.865769 CTTGTTTGGAACCGACCGAG 59.134 55.000 0.00 0.00 0.00 4.63
2830 8103 0.533308 TTGTTTGGAACCGACCGAGG 60.533 55.000 0.00 0.00 37.30 4.63
2831 8104 1.368579 GTTTGGAACCGACCGAGGA 59.631 57.895 0.00 0.00 34.73 3.71
2832 8105 0.036671 GTTTGGAACCGACCGAGGAT 60.037 55.000 0.00 0.00 34.73 3.24
2833 8106 0.036765 TTTGGAACCGACCGAGGATG 60.037 55.000 0.00 0.00 34.73 3.51
2834 8107 0.901114 TTGGAACCGACCGAGGATGA 60.901 55.000 0.00 0.00 34.73 2.92
2835 8108 1.320344 TGGAACCGACCGAGGATGAG 61.320 60.000 0.00 0.00 34.73 2.90
2836 8109 1.437986 GAACCGACCGAGGATGAGG 59.562 63.158 0.00 0.00 34.73 3.86
2837 8110 2.630592 GAACCGACCGAGGATGAGGC 62.631 65.000 0.00 0.00 34.73 4.70
2838 8111 3.147595 CCGACCGAGGATGAGGCA 61.148 66.667 0.00 0.00 0.00 4.75
2839 8112 2.721167 CCGACCGAGGATGAGGCAA 61.721 63.158 0.00 0.00 0.00 4.52
2840 8113 1.519455 CGACCGAGGATGAGGCAAC 60.519 63.158 0.00 0.00 0.00 4.17
2841 8114 1.596934 GACCGAGGATGAGGCAACA 59.403 57.895 0.00 0.00 41.41 3.33
2842 8115 0.036388 GACCGAGGATGAGGCAACAA 60.036 55.000 0.00 0.00 41.41 2.83
2843 8116 0.321653 ACCGAGGATGAGGCAACAAC 60.322 55.000 0.00 0.00 41.41 3.32
2844 8117 1.361668 CCGAGGATGAGGCAACAACG 61.362 60.000 0.00 0.00 41.41 4.10
2845 8118 0.389817 CGAGGATGAGGCAACAACGA 60.390 55.000 0.00 0.00 41.41 3.85
2846 8119 1.740380 CGAGGATGAGGCAACAACGAT 60.740 52.381 0.00 0.00 41.41 3.73
2847 8120 1.667724 GAGGATGAGGCAACAACGATG 59.332 52.381 0.00 0.00 41.41 3.84
2848 8121 1.278985 AGGATGAGGCAACAACGATGA 59.721 47.619 0.00 0.00 41.41 2.92
2849 8122 1.398390 GGATGAGGCAACAACGATGAC 59.602 52.381 0.00 0.00 41.41 3.06
2850 8123 1.398390 GATGAGGCAACAACGATGACC 59.602 52.381 0.00 0.00 41.41 4.02
2851 8124 0.605319 TGAGGCAACAACGATGACCC 60.605 55.000 0.00 0.00 41.41 4.46
2852 8125 1.635663 GAGGCAACAACGATGACCCG 61.636 60.000 0.00 0.00 41.41 5.28
2853 8126 2.175811 GCAACAACGATGACCCGC 59.824 61.111 0.00 0.00 0.00 6.13
2854 8127 2.325082 GCAACAACGATGACCCGCT 61.325 57.895 0.00 0.00 0.00 5.52
2855 8128 1.787847 CAACAACGATGACCCGCTC 59.212 57.895 0.00 0.00 0.00 5.03
2856 8129 1.736645 AACAACGATGACCCGCTCG 60.737 57.895 0.00 0.00 40.62 5.03
2857 8130 2.885644 CAACGATGACCCGCTCGG 60.886 66.667 0.48 0.48 39.16 4.63
2858 8131 4.814294 AACGATGACCCGCTCGGC 62.814 66.667 2.18 0.00 39.16 5.54
2860 8133 4.514577 CGATGACCCGCTCGGCTT 62.515 66.667 2.18 0.00 33.26 4.35
2861 8134 2.586357 GATGACCCGCTCGGCTTC 60.586 66.667 2.18 2.29 33.26 3.86
2862 8135 4.162690 ATGACCCGCTCGGCTTCC 62.163 66.667 2.18 0.00 33.26 3.46
2864 8137 4.821589 GACCCGCTCGGCTTCCTG 62.822 72.222 2.18 0.00 33.26 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 58 6.275335 AGTGTTCACATTCATTGTCCAAAAG 58.725 36.000 5.74 0.00 36.00 2.27
140 150 3.574614 GACCACAACATTGGATTTTCCG 58.425 45.455 0.00 0.00 40.17 4.30
155 165 1.545136 TCGCCTTATTGTACGACCACA 59.455 47.619 0.00 0.00 0.00 4.17
160 170 3.581024 ACAAGTCGCCTTATTGTACGA 57.419 42.857 0.00 0.00 35.47 3.43
164 174 3.219281 ACCAAACAAGTCGCCTTATTGT 58.781 40.909 4.04 0.00 38.76 2.71
172 182 0.179150 TGCACAACCAAACAAGTCGC 60.179 50.000 0.00 0.00 0.00 5.19
173 183 1.135546 TGTGCACAACCAAACAAGTCG 60.136 47.619 19.28 0.00 0.00 4.18
237 247 0.251121 TCCTCATTTGAAAGGCGCCA 60.251 50.000 31.54 6.82 32.37 5.69
248 258 8.681584 TCCCTGATATATTTTGGATCCTCATTT 58.318 33.333 14.23 0.52 0.00 2.32
251 261 7.835728 ATCCCTGATATATTTTGGATCCTCA 57.164 36.000 14.23 4.61 0.00 3.86
270 280 4.043596 AGGCACTTCTCTCAATTATCCCT 58.956 43.478 0.00 0.00 27.25 4.20
276 286 6.613153 ACTACTTAGGCACTTCTCTCAATT 57.387 37.500 0.00 0.00 41.75 2.32
280 290 4.463186 TCCAACTACTTAGGCACTTCTCTC 59.537 45.833 0.00 0.00 41.75 3.20
293 304 3.068165 GCAACTTGCCTTTCCAACTACTT 59.932 43.478 1.95 0.00 37.42 2.24
319 330 6.897966 TGATAGAACAAGTCTTCCTCCTACAT 59.102 38.462 0.00 0.00 37.84 2.29
349 360 2.138320 AGAGTCATGTTTGTGAGCACG 58.862 47.619 0.00 0.00 0.00 5.34
366 1561 4.582656 AGAACAATGAGATCCTACGGAGAG 59.417 45.833 0.00 0.00 34.05 3.20
372 1567 7.113658 TGGAAGTAGAACAATGAGATCCTAC 57.886 40.000 0.00 0.00 0.00 3.18
375 1570 7.957002 TCTATGGAAGTAGAACAATGAGATCC 58.043 38.462 0.00 0.00 0.00 3.36
385 1580 5.446073 GCAAAACGCTCTATGGAAGTAGAAC 60.446 44.000 0.00 0.00 37.77 3.01
397 1592 3.743911 TCGATTCTTTGCAAAACGCTCTA 59.256 39.130 13.84 0.00 43.06 2.43
400 1595 3.559238 ATCGATTCTTTGCAAAACGCT 57.441 38.095 13.84 5.92 43.06 5.07
417 1612 5.630661 AATCCGGATCTGAAGTAGTATCG 57.369 43.478 19.43 0.00 0.00 2.92
422 1617 5.283457 AGGAAAATCCGGATCTGAAGTAG 57.717 43.478 19.43 0.00 42.75 2.57
465 1660 2.290641 GACGCAATGTGGACACTTCTTT 59.709 45.455 3.91 0.00 0.00 2.52
468 1664 0.163788 CGACGCAATGTGGACACTTC 59.836 55.000 3.91 0.00 0.00 3.01
526 1722 2.408333 GGATTCATTCCCTGCGTGG 58.592 57.895 0.00 0.00 38.75 4.94
537 1733 5.180271 GTGTCAAATTGCATTGGGATTCAT 58.820 37.500 0.38 0.00 0.00 2.57
538 1734 4.040095 TGTGTCAAATTGCATTGGGATTCA 59.960 37.500 0.38 0.00 0.00 2.57
583 1809 3.017048 TCCGAACGGAGGGAGTATTAA 57.983 47.619 12.04 0.00 39.76 1.40
591 1817 2.277084 CAAGTATTTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
592 1818 2.928116 GACAAGTATTTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
594 1820 2.598589 CGACAAGTATTTCCGAACGGA 58.401 47.619 12.04 12.04 43.52 4.69
595 1821 1.657094 CCGACAAGTATTTCCGAACGG 59.343 52.381 6.94 6.94 0.00 4.44
597 1823 2.343544 CGTCCGACAAGTATTTCCGAAC 59.656 50.000 0.00 0.00 0.00 3.95
600 1826 2.267188 TCGTCCGACAAGTATTTCCG 57.733 50.000 0.00 0.00 0.00 4.30
601 1827 3.308866 CCATTCGTCCGACAAGTATTTCC 59.691 47.826 0.00 0.00 0.00 3.13
604 1830 3.880047 TCCATTCGTCCGACAAGTATT 57.120 42.857 0.00 0.00 0.00 1.89
605 1831 3.132289 ACATCCATTCGTCCGACAAGTAT 59.868 43.478 0.00 0.00 0.00 2.12
606 1832 2.494471 ACATCCATTCGTCCGACAAGTA 59.506 45.455 0.00 0.00 0.00 2.24
607 1833 1.275291 ACATCCATTCGTCCGACAAGT 59.725 47.619 0.00 0.00 0.00 3.16
608 1834 2.010145 ACATCCATTCGTCCGACAAG 57.990 50.000 0.00 0.00 0.00 3.16
609 1835 3.383505 AGATACATCCATTCGTCCGACAA 59.616 43.478 0.00 0.00 0.00 3.18
610 1836 2.956333 AGATACATCCATTCGTCCGACA 59.044 45.455 0.00 0.00 0.00 4.35
612 1838 4.454847 GTCTAGATACATCCATTCGTCCGA 59.545 45.833 0.00 0.00 0.00 4.55
613 1839 4.669453 CGTCTAGATACATCCATTCGTCCG 60.669 50.000 0.00 0.00 0.00 4.79
614 1840 4.215827 ACGTCTAGATACATCCATTCGTCC 59.784 45.833 0.00 0.00 0.00 4.79
615 1841 5.359716 ACGTCTAGATACATCCATTCGTC 57.640 43.478 0.00 0.00 0.00 4.20
617 1843 8.123575 CCTAATACGTCTAGATACATCCATTCG 58.876 40.741 0.00 0.00 0.00 3.34
618 1844 8.958506 ACCTAATACGTCTAGATACATCCATTC 58.041 37.037 0.00 0.00 0.00 2.67
619 1845 8.880991 ACCTAATACGTCTAGATACATCCATT 57.119 34.615 0.00 0.00 0.00 3.16
620 1846 9.393512 GTACCTAATACGTCTAGATACATCCAT 57.606 37.037 0.00 0.00 0.00 3.41
621 1847 8.377799 TGTACCTAATACGTCTAGATACATCCA 58.622 37.037 7.44 0.00 36.47 3.41
622 1848 8.783833 TGTACCTAATACGTCTAGATACATCC 57.216 38.462 7.44 0.00 36.47 3.51
645 1871 9.722056 GTCGAAGAAATGCATAAAAATAGATGT 57.278 29.630 0.00 0.00 39.69 3.06
648 1874 9.773328 CTTGTCGAAGAAATGCATAAAAATAGA 57.227 29.630 0.00 0.00 39.69 1.98
649 1875 9.559958 ACTTGTCGAAGAAATGCATAAAAATAG 57.440 29.630 0.00 0.00 39.69 1.73
652 1878 9.906660 AATACTTGTCGAAGAAATGCATAAAAA 57.093 25.926 0.00 0.00 39.69 1.94
656 1882 7.763985 TCAGAATACTTGTCGAAGAAATGCATA 59.236 33.333 0.00 0.00 39.69 3.14
658 1884 5.931724 TCAGAATACTTGTCGAAGAAATGCA 59.068 36.000 0.00 0.00 39.69 3.96
661 1887 8.017946 GCTTTTCAGAATACTTGTCGAAGAAAT 58.982 33.333 0.00 0.00 39.69 2.17
663 1889 6.481976 TGCTTTTCAGAATACTTGTCGAAGAA 59.518 34.615 0.00 0.00 39.69 2.52
664 1890 5.989168 TGCTTTTCAGAATACTTGTCGAAGA 59.011 36.000 0.00 0.00 32.98 2.87
665 1891 6.228273 TGCTTTTCAGAATACTTGTCGAAG 57.772 37.500 0.00 0.00 35.07 3.79
666 1892 6.427150 GTTGCTTTTCAGAATACTTGTCGAA 58.573 36.000 0.00 0.00 0.00 3.71
668 1894 5.049405 AGGTTGCTTTTCAGAATACTTGTCG 60.049 40.000 0.00 0.00 0.00 4.35
669 1895 6.319141 AGGTTGCTTTTCAGAATACTTGTC 57.681 37.500 0.00 0.00 0.00 3.18
874 5901 3.660111 GTCCCTTGTGTGTGGCGC 61.660 66.667 0.00 0.00 0.00 6.53
1864 7120 2.478890 GCGCTAGCTCGGTGGTCTA 61.479 63.158 13.93 0.00 41.01 2.59
2510 7782 9.905713 ACAAGGTGAAGAATGCTTATAATAAGA 57.094 29.630 0.00 0.00 33.61 2.10
2515 7787 8.736244 GGTTTACAAGGTGAAGAATGCTTATAA 58.264 33.333 0.00 0.00 33.61 0.98
2518 7790 6.065374 TGGTTTACAAGGTGAAGAATGCTTA 58.935 36.000 0.00 0.00 33.61 3.09
2531 7803 5.070001 TCAATCTCAGGTTGGTTTACAAGG 58.930 41.667 0.00 0.00 40.38 3.61
2545 7817 5.055812 GTCCTCCTAAGCATTCAATCTCAG 58.944 45.833 0.00 0.00 0.00 3.35
2548 7820 5.441718 TTGTCCTCCTAAGCATTCAATCT 57.558 39.130 0.00 0.00 0.00 2.40
2558 7830 6.763610 GGTGAAGATAACATTGTCCTCCTAAG 59.236 42.308 0.00 0.00 0.00 2.18
2562 7834 3.871594 CGGTGAAGATAACATTGTCCTCC 59.128 47.826 0.00 0.00 0.00 4.30
2573 7845 1.899814 ACTCTGGTGCGGTGAAGATAA 59.100 47.619 0.00 0.00 0.00 1.75
2579 7851 0.249868 CTTGAACTCTGGTGCGGTGA 60.250 55.000 0.00 0.00 0.00 4.02
2582 7854 0.951040 GGACTTGAACTCTGGTGCGG 60.951 60.000 0.00 0.00 0.00 5.69
2584 7856 2.563179 TCTAGGACTTGAACTCTGGTGC 59.437 50.000 0.00 0.00 0.00 5.01
2585 7857 3.829601 AGTCTAGGACTTGAACTCTGGTG 59.170 47.826 0.00 0.00 40.28 4.17
2587 7859 3.194542 CCAGTCTAGGACTTGAACTCTGG 59.805 52.174 0.00 0.00 41.37 3.86
2603 7876 1.908793 CCGGTCCAGTGTCCAGTCT 60.909 63.158 0.00 0.00 0.00 3.24
2609 7882 2.668550 GTTGCCCGGTCCAGTGTC 60.669 66.667 0.00 0.00 0.00 3.67
2610 7883 4.619227 CGTTGCCCGGTCCAGTGT 62.619 66.667 0.00 0.00 0.00 3.55
2611 7884 4.308458 TCGTTGCCCGGTCCAGTG 62.308 66.667 0.00 0.00 37.11 3.66
2612 7885 4.309950 GTCGTTGCCCGGTCCAGT 62.310 66.667 0.00 0.00 37.11 4.00
2621 7894 3.343421 AAAGCCGTCGTCGTTGCC 61.343 61.111 0.71 0.00 35.01 4.52
2622 7895 2.127758 CAAAGCCGTCGTCGTTGC 60.128 61.111 0.71 0.00 35.01 4.17
2623 7896 1.200839 GACAAAGCCGTCGTCGTTG 59.799 57.895 0.44 0.44 35.01 4.10
2624 7897 1.066918 AGACAAAGCCGTCGTCGTT 59.933 52.632 0.71 0.00 40.98 3.85
2625 7898 1.660575 CAGACAAAGCCGTCGTCGT 60.661 57.895 0.71 0.00 40.98 4.34
2626 7899 0.937699 TTCAGACAAAGCCGTCGTCG 60.938 55.000 0.00 0.00 40.98 5.12
2627 7900 1.214367 TTTCAGACAAAGCCGTCGTC 58.786 50.000 0.00 0.00 40.98 4.20
2628 7901 1.658994 TTTTCAGACAAAGCCGTCGT 58.341 45.000 0.00 0.00 40.98 4.34
2629 7902 2.748461 TTTTTCAGACAAAGCCGTCG 57.252 45.000 0.00 0.00 40.98 5.12
2646 7919 6.099845 TCCAGTCTAGGACTTGAACTCTTTTT 59.900 38.462 0.00 0.00 41.37 1.94
2647 7920 5.602978 TCCAGTCTAGGACTTGAACTCTTTT 59.397 40.000 0.00 0.00 41.37 2.27
2648 7921 5.148502 TCCAGTCTAGGACTTGAACTCTTT 58.851 41.667 0.00 0.00 41.37 2.52
2649 7922 4.742012 TCCAGTCTAGGACTTGAACTCTT 58.258 43.478 0.00 0.00 41.37 2.85
2650 7923 4.390129 TCCAGTCTAGGACTTGAACTCT 57.610 45.455 0.00 0.00 41.37 3.24
2660 7933 1.147191 ACACCAGTGTCCAGTCTAGGA 59.853 52.381 0.00 0.00 40.24 2.94
2661 7934 1.633774 ACACCAGTGTCCAGTCTAGG 58.366 55.000 0.00 0.00 40.24 3.02
2662 7935 2.351835 CGAACACCAGTGTCCAGTCTAG 60.352 54.545 3.49 0.00 44.13 2.43
2663 7936 1.611977 CGAACACCAGTGTCCAGTCTA 59.388 52.381 3.49 0.00 44.13 2.59
2664 7937 0.389391 CGAACACCAGTGTCCAGTCT 59.611 55.000 3.49 0.00 44.13 3.24
2665 7938 0.104304 ACGAACACCAGTGTCCAGTC 59.896 55.000 3.49 0.00 44.13 3.51
2666 7939 1.405872 TACGAACACCAGTGTCCAGT 58.594 50.000 3.49 7.37 44.13 4.00
2667 7940 2.743636 ATACGAACACCAGTGTCCAG 57.256 50.000 3.49 1.77 44.13 3.86
2668 7941 3.478857 AAATACGAACACCAGTGTCCA 57.521 42.857 3.49 0.00 44.13 4.02
2669 7942 4.273969 TGAAAAATACGAACACCAGTGTCC 59.726 41.667 3.49 0.00 44.13 4.02
2670 7943 5.412526 TGAAAAATACGAACACCAGTGTC 57.587 39.130 3.49 0.00 44.13 3.67
2672 7945 8.964420 AATAATGAAAAATACGAACACCAGTG 57.036 30.769 0.00 0.00 0.00 3.66
2690 7963 9.781834 CGCTAAAAGGTGTGAAATAAATAATGA 57.218 29.630 0.00 0.00 0.00 2.57
2691 7964 9.781834 TCGCTAAAAGGTGTGAAATAAATAATG 57.218 29.630 0.00 0.00 0.00 1.90
2693 7966 9.781834 CATCGCTAAAAGGTGTGAAATAAATAA 57.218 29.630 0.00 0.00 0.00 1.40
2694 7967 8.952278 ACATCGCTAAAAGGTGTGAAATAAATA 58.048 29.630 0.00 0.00 0.00 1.40
2695 7968 7.826690 ACATCGCTAAAAGGTGTGAAATAAAT 58.173 30.769 0.00 0.00 0.00 1.40
2696 7969 7.209471 ACATCGCTAAAAGGTGTGAAATAAA 57.791 32.000 0.00 0.00 0.00 1.40
2697 7970 6.811253 ACATCGCTAAAAGGTGTGAAATAA 57.189 33.333 0.00 0.00 0.00 1.40
2698 7971 6.035220 CGTACATCGCTAAAAGGTGTGAAATA 59.965 38.462 0.00 0.00 0.00 1.40
2699 7972 5.163893 CGTACATCGCTAAAAGGTGTGAAAT 60.164 40.000 0.00 0.00 0.00 2.17
2700 7973 4.150980 CGTACATCGCTAAAAGGTGTGAAA 59.849 41.667 0.00 0.00 0.00 2.69
2701 7974 3.676172 CGTACATCGCTAAAAGGTGTGAA 59.324 43.478 0.00 0.00 0.00 3.18
2702 7975 3.247442 CGTACATCGCTAAAAGGTGTGA 58.753 45.455 0.00 0.00 0.00 3.58
2703 7976 2.991190 ACGTACATCGCTAAAAGGTGTG 59.009 45.455 0.00 0.00 44.19 3.82
2704 7977 3.308438 ACGTACATCGCTAAAAGGTGT 57.692 42.857 0.00 0.00 44.19 4.16
2705 7978 3.676172 TGAACGTACATCGCTAAAAGGTG 59.324 43.478 0.00 0.00 44.19 4.00
2706 7979 3.916761 TGAACGTACATCGCTAAAAGGT 58.083 40.909 0.00 0.00 44.19 3.50
2707 7980 3.924686 ACTGAACGTACATCGCTAAAAGG 59.075 43.478 0.00 0.00 44.19 3.11
2708 7981 4.619760 TCACTGAACGTACATCGCTAAAAG 59.380 41.667 0.00 0.00 44.19 2.27
2709 7982 4.548494 TCACTGAACGTACATCGCTAAAA 58.452 39.130 0.00 0.00 44.19 1.52
2710 7983 4.163458 TCACTGAACGTACATCGCTAAA 57.837 40.909 0.00 0.00 44.19 1.85
2711 7984 3.835378 TCACTGAACGTACATCGCTAA 57.165 42.857 0.00 0.00 44.19 3.09
2712 7985 3.835378 TTCACTGAACGTACATCGCTA 57.165 42.857 0.00 0.00 44.19 4.26
2713 7986 2.717580 TTCACTGAACGTACATCGCT 57.282 45.000 0.00 0.00 44.19 4.93
2714 7987 2.984471 TCTTTCACTGAACGTACATCGC 59.016 45.455 0.00 0.00 44.19 4.58
2715 7988 4.915667 TCTTCTTTCACTGAACGTACATCG 59.084 41.667 0.00 0.00 46.00 3.84
2716 7989 5.164177 CGTCTTCTTTCACTGAACGTACATC 60.164 44.000 0.00 0.00 0.00 3.06
2717 7990 4.680110 CGTCTTCTTTCACTGAACGTACAT 59.320 41.667 0.00 0.00 0.00 2.29
2718 7991 4.039703 CGTCTTCTTTCACTGAACGTACA 58.960 43.478 0.00 0.00 0.00 2.90
2719 7992 4.040376 ACGTCTTCTTTCACTGAACGTAC 58.960 43.478 3.13 0.00 28.98 3.67
2720 7993 4.297299 ACGTCTTCTTTCACTGAACGTA 57.703 40.909 3.13 0.00 28.98 3.57
2721 7994 3.160777 ACGTCTTCTTTCACTGAACGT 57.839 42.857 0.00 0.00 0.00 3.99
2722 7995 4.516092 AAACGTCTTCTTTCACTGAACG 57.484 40.909 0.00 0.00 0.00 3.95
2723 7996 4.956184 CGAAAACGTCTTCTTTCACTGAAC 59.044 41.667 10.21 0.00 32.19 3.18
2724 7997 4.628333 ACGAAAACGTCTTCTTTCACTGAA 59.372 37.500 10.21 0.00 32.19 3.02
2725 7998 4.178540 ACGAAAACGTCTTCTTTCACTGA 58.821 39.130 10.21 0.00 32.19 3.41
2726 7999 4.506217 GACGAAAACGTCTTCTTTCACTG 58.494 43.478 14.10 0.00 36.12 3.66
2727 8000 3.242248 CGACGAAAACGTCTTCTTTCACT 59.758 43.478 17.92 0.00 36.81 3.41
2728 8001 3.241322 TCGACGAAAACGTCTTCTTTCAC 59.759 43.478 17.92 3.94 36.81 3.18
2729 8002 3.241322 GTCGACGAAAACGTCTTCTTTCA 59.759 43.478 17.92 0.00 36.81 2.69
2730 8003 3.485013 AGTCGACGAAAACGTCTTCTTTC 59.515 43.478 10.46 0.37 36.81 2.62
2731 8004 3.442100 AGTCGACGAAAACGTCTTCTTT 58.558 40.909 10.46 0.00 36.81 2.52
2732 8005 3.075866 AGTCGACGAAAACGTCTTCTT 57.924 42.857 10.46 0.00 36.81 2.52
2733 8006 2.770699 AGTCGACGAAAACGTCTTCT 57.229 45.000 10.46 13.18 36.81 2.85
2734 8007 3.291585 TGTAGTCGACGAAAACGTCTTC 58.708 45.455 10.46 11.57 36.81 2.87
2735 8008 3.338818 TGTAGTCGACGAAAACGTCTT 57.661 42.857 10.46 8.25 36.81 3.01
2736 8009 3.338818 TTGTAGTCGACGAAAACGTCT 57.661 42.857 10.46 0.00 36.81 4.18
2737 8010 4.421520 TTTTGTAGTCGACGAAAACGTC 57.578 40.909 10.46 11.84 38.30 4.34
2738 8011 4.838665 TTTTTGTAGTCGACGAAAACGT 57.161 36.364 17.35 0.00 43.57 3.99
2742 8015 7.878477 ATAGACATTTTTGTAGTCGACGAAA 57.122 32.000 10.46 8.03 39.29 3.46
2743 8016 7.878477 AATAGACATTTTTGTAGTCGACGAA 57.122 32.000 10.46 1.64 37.36 3.85
2744 8017 7.620600 GCAAATAGACATTTTTGTAGTCGACGA 60.621 37.037 10.46 0.94 37.36 4.20
2745 8018 6.461698 GCAAATAGACATTTTTGTAGTCGACG 59.538 38.462 10.46 0.00 37.36 5.12
2746 8019 6.461698 CGCAAATAGACATTTTTGTAGTCGAC 59.538 38.462 7.70 7.70 37.36 4.20
2747 8020 6.366604 TCGCAAATAGACATTTTTGTAGTCGA 59.633 34.615 0.00 0.00 37.36 4.20
2748 8021 6.530567 TCGCAAATAGACATTTTTGTAGTCG 58.469 36.000 0.00 0.00 37.36 4.18
2749 8022 8.895932 ATTCGCAAATAGACATTTTTGTAGTC 57.104 30.769 0.00 0.00 35.69 2.59
2750 8023 9.341899 GAATTCGCAAATAGACATTTTTGTAGT 57.658 29.630 0.00 0.00 35.69 2.73
2751 8024 8.515473 CGAATTCGCAAATAGACATTTTTGTAG 58.485 33.333 15.93 0.00 35.69 2.74
2752 8025 8.018520 ACGAATTCGCAAATAGACATTTTTGTA 58.981 29.630 27.03 0.00 44.43 2.41
2753 8026 6.861055 ACGAATTCGCAAATAGACATTTTTGT 59.139 30.769 27.03 0.00 44.43 2.83
2754 8027 7.060518 TGACGAATTCGCAAATAGACATTTTTG 59.939 33.333 27.03 0.00 44.43 2.44
2755 8028 7.081349 TGACGAATTCGCAAATAGACATTTTT 58.919 30.769 27.03 1.87 44.43 1.94
2756 8029 6.607689 TGACGAATTCGCAAATAGACATTTT 58.392 32.000 27.03 2.56 44.43 1.82
2757 8030 6.176975 TGACGAATTCGCAAATAGACATTT 57.823 33.333 27.03 3.03 44.43 2.32
2758 8031 5.794687 TGACGAATTCGCAAATAGACATT 57.205 34.783 27.03 3.24 44.43 2.71
2759 8032 5.794687 TTGACGAATTCGCAAATAGACAT 57.205 34.783 27.03 3.80 44.43 3.06
2760 8033 5.580691 AGATTGACGAATTCGCAAATAGACA 59.419 36.000 28.35 15.03 44.43 3.41
2761 8034 6.037423 AGATTGACGAATTCGCAAATAGAC 57.963 37.500 28.35 20.04 44.43 2.59
2762 8035 6.662414 AAGATTGACGAATTCGCAAATAGA 57.338 33.333 28.35 14.79 44.43 1.98
2763 8036 8.275632 TCATAAGATTGACGAATTCGCAAATAG 58.724 33.333 28.35 19.12 44.43 1.73
2764 8037 8.137210 TCATAAGATTGACGAATTCGCAAATA 57.863 30.769 28.35 22.86 44.43 1.40
2765 8038 7.015226 TCATAAGATTGACGAATTCGCAAAT 57.985 32.000 28.35 25.26 44.43 2.32
2766 8039 6.415798 TCATAAGATTGACGAATTCGCAAA 57.584 33.333 28.35 22.64 44.43 3.68
2767 8040 6.257630 TCATCATAAGATTGACGAATTCGCAA 59.742 34.615 27.46 27.46 38.75 4.85
2768 8041 5.752955 TCATCATAAGATTGACGAATTCGCA 59.247 36.000 27.03 21.44 35.97 5.10
2769 8042 6.215477 TCATCATAAGATTGACGAATTCGC 57.785 37.500 27.03 19.24 35.97 4.70
2770 8043 7.790974 ACATCATCATAAGATTGACGAATTCG 58.209 34.615 25.64 25.64 37.65 3.34
2771 8044 8.986847 AGACATCATCATAAGATTGACGAATTC 58.013 33.333 0.00 0.00 30.20 2.17
2772 8045 8.899427 AGACATCATCATAAGATTGACGAATT 57.101 30.769 0.00 0.00 30.20 2.17
2773 8046 8.146412 TGAGACATCATCATAAGATTGACGAAT 58.854 33.333 0.00 0.00 30.20 3.34
2774 8047 7.436376 GTGAGACATCATCATAAGATTGACGAA 59.564 37.037 0.00 0.00 37.87 3.85
2775 8048 6.920210 GTGAGACATCATCATAAGATTGACGA 59.080 38.462 0.00 0.00 37.87 4.20
2776 8049 6.145209 GGTGAGACATCATCATAAGATTGACG 59.855 42.308 0.00 0.00 36.49 4.35
2777 8050 7.215789 AGGTGAGACATCATCATAAGATTGAC 58.784 38.462 0.00 0.00 39.19 3.18
2778 8051 7.070322 TGAGGTGAGACATCATCATAAGATTGA 59.930 37.037 0.00 0.00 39.19 2.57
2779 8052 7.215085 TGAGGTGAGACATCATCATAAGATTG 58.785 38.462 0.00 0.00 39.19 2.67
2780 8053 7.370905 TGAGGTGAGACATCATCATAAGATT 57.629 36.000 0.00 0.00 39.19 2.40
2781 8054 6.014413 CCTGAGGTGAGACATCATCATAAGAT 60.014 42.308 0.00 0.00 38.30 2.40
2782 8055 5.303845 CCTGAGGTGAGACATCATCATAAGA 59.696 44.000 0.00 0.00 38.30 2.10
2783 8056 5.539979 CCTGAGGTGAGACATCATCATAAG 58.460 45.833 0.00 0.00 38.30 1.73
2784 8057 4.202295 GCCTGAGGTGAGACATCATCATAA 60.202 45.833 0.00 0.00 38.30 1.90
2785 8058 3.323115 GCCTGAGGTGAGACATCATCATA 59.677 47.826 0.00 0.00 38.30 2.15
2786 8059 2.104451 GCCTGAGGTGAGACATCATCAT 59.896 50.000 0.00 0.00 38.30 2.45
2787 8060 1.483827 GCCTGAGGTGAGACATCATCA 59.516 52.381 0.00 0.00 38.30 3.07
2788 8061 1.537776 CGCCTGAGGTGAGACATCATC 60.538 57.143 6.07 0.00 38.30 2.92
2789 8062 0.463204 CGCCTGAGGTGAGACATCAT 59.537 55.000 6.07 0.00 38.30 2.45
2790 8063 1.893062 CGCCTGAGGTGAGACATCA 59.107 57.895 6.07 0.00 36.47 3.07
2791 8064 1.520342 GCGCCTGAGGTGAGACATC 60.520 63.158 17.69 0.00 34.74 3.06
2792 8065 2.581354 GCGCCTGAGGTGAGACAT 59.419 61.111 17.69 0.00 34.74 3.06
2793 8066 3.695606 GGCGCCTGAGGTGAGACA 61.696 66.667 22.15 0.00 34.74 3.41
2794 8067 2.948720 AAGGCGCCTGAGGTGAGAC 61.949 63.158 33.60 4.96 34.74 3.36
2795 8068 2.604686 AAGGCGCCTGAGGTGAGA 60.605 61.111 33.60 0.00 34.74 3.27
2796 8069 2.435586 CAAGGCGCCTGAGGTGAG 60.436 66.667 33.60 10.30 34.74 3.51
2797 8070 2.337879 AAACAAGGCGCCTGAGGTGA 62.338 55.000 33.60 0.00 34.74 4.02
2798 8071 1.898574 AAACAAGGCGCCTGAGGTG 60.899 57.895 33.60 26.61 36.10 4.00
2799 8072 1.898574 CAAACAAGGCGCCTGAGGT 60.899 57.895 33.60 25.26 0.00 3.85
2800 8073 2.629656 CCAAACAAGGCGCCTGAGG 61.630 63.158 33.60 24.54 0.00 3.86
2801 8074 1.172180 TTCCAAACAAGGCGCCTGAG 61.172 55.000 33.60 27.54 0.00 3.35
2802 8075 1.152860 TTCCAAACAAGGCGCCTGA 60.153 52.632 33.60 19.40 0.00 3.86
2803 8076 1.007387 GTTCCAAACAAGGCGCCTG 60.007 57.895 33.60 25.40 0.00 4.85
2804 8077 2.200337 GGTTCCAAACAAGGCGCCT 61.200 57.895 27.08 27.08 0.00 5.52
2805 8078 2.338620 GGTTCCAAACAAGGCGCC 59.661 61.111 21.89 21.89 0.00 6.53
2806 8079 2.050442 CGGTTCCAAACAAGGCGC 60.050 61.111 0.00 0.00 0.00 6.53
2807 8080 1.281656 GTCGGTTCCAAACAAGGCG 59.718 57.895 0.00 0.00 0.00 5.52
2808 8081 1.658114 GGTCGGTTCCAAACAAGGC 59.342 57.895 0.00 0.00 0.00 4.35
2809 8082 0.533308 TCGGTCGGTTCCAAACAAGG 60.533 55.000 0.00 0.00 0.00 3.61
2810 8083 0.865769 CTCGGTCGGTTCCAAACAAG 59.134 55.000 0.00 0.00 0.00 3.16
2811 8084 0.533308 CCTCGGTCGGTTCCAAACAA 60.533 55.000 0.00 0.00 0.00 2.83
2812 8085 1.070105 CCTCGGTCGGTTCCAAACA 59.930 57.895 0.00 0.00 0.00 2.83
2813 8086 0.036671 ATCCTCGGTCGGTTCCAAAC 60.037 55.000 0.00 0.00 0.00 2.93
2814 8087 0.036765 CATCCTCGGTCGGTTCCAAA 60.037 55.000 0.00 0.00 0.00 3.28
2815 8088 0.901114 TCATCCTCGGTCGGTTCCAA 60.901 55.000 0.00 0.00 0.00 3.53
2816 8089 1.304630 TCATCCTCGGTCGGTTCCA 60.305 57.895 0.00 0.00 0.00 3.53
2817 8090 1.437986 CTCATCCTCGGTCGGTTCC 59.562 63.158 0.00 0.00 0.00 3.62
2818 8091 1.437986 CCTCATCCTCGGTCGGTTC 59.562 63.158 0.00 0.00 0.00 3.62
2819 8092 2.722201 GCCTCATCCTCGGTCGGTT 61.722 63.158 0.00 0.00 0.00 4.44
2820 8093 3.148279 GCCTCATCCTCGGTCGGT 61.148 66.667 0.00 0.00 0.00 4.69
2821 8094 2.721167 TTGCCTCATCCTCGGTCGG 61.721 63.158 0.00 0.00 0.00 4.79
2822 8095 1.519455 GTTGCCTCATCCTCGGTCG 60.519 63.158 0.00 0.00 0.00 4.79
2823 8096 0.036388 TTGTTGCCTCATCCTCGGTC 60.036 55.000 0.00 0.00 0.00 4.79
2824 8097 0.321653 GTTGTTGCCTCATCCTCGGT 60.322 55.000 0.00 0.00 0.00 4.69
2825 8098 1.361668 CGTTGTTGCCTCATCCTCGG 61.362 60.000 0.00 0.00 0.00 4.63
2826 8099 0.389817 TCGTTGTTGCCTCATCCTCG 60.390 55.000 0.00 0.00 0.00 4.63
2827 8100 1.667724 CATCGTTGTTGCCTCATCCTC 59.332 52.381 0.00 0.00 0.00 3.71
2828 8101 1.278985 TCATCGTTGTTGCCTCATCCT 59.721 47.619 0.00 0.00 0.00 3.24
2829 8102 1.398390 GTCATCGTTGTTGCCTCATCC 59.602 52.381 0.00 0.00 0.00 3.51
2830 8103 1.398390 GGTCATCGTTGTTGCCTCATC 59.602 52.381 0.00 0.00 0.00 2.92
2831 8104 1.453155 GGTCATCGTTGTTGCCTCAT 58.547 50.000 0.00 0.00 0.00 2.90
2832 8105 0.605319 GGGTCATCGTTGTTGCCTCA 60.605 55.000 0.00 0.00 0.00 3.86
2833 8106 1.635663 CGGGTCATCGTTGTTGCCTC 61.636 60.000 0.00 0.00 0.00 4.70
2834 8107 1.671054 CGGGTCATCGTTGTTGCCT 60.671 57.895 0.00 0.00 0.00 4.75
2835 8108 2.867472 CGGGTCATCGTTGTTGCC 59.133 61.111 0.00 0.00 0.00 4.52
2836 8109 2.175811 GCGGGTCATCGTTGTTGC 59.824 61.111 0.00 0.00 0.00 4.17
2837 8110 1.787847 GAGCGGGTCATCGTTGTTG 59.212 57.895 1.64 0.00 0.00 3.33
2838 8111 1.736645 CGAGCGGGTCATCGTTGTT 60.737 57.895 8.06 0.00 34.30 2.83
2839 8112 2.126071 CGAGCGGGTCATCGTTGT 60.126 61.111 8.06 0.00 34.30 3.32
2840 8113 2.885644 CCGAGCGGGTCATCGTTG 60.886 66.667 8.06 0.00 37.23 4.10
2841 8114 4.814294 GCCGAGCGGGTCATCGTT 62.814 66.667 11.30 0.00 37.23 3.85
2843 8116 4.514577 AAGCCGAGCGGGTCATCG 62.515 66.667 14.44 0.00 46.38 3.84
2844 8117 2.586357 GAAGCCGAGCGGGTCATC 60.586 66.667 14.44 5.60 46.38 2.92
2845 8118 4.162690 GGAAGCCGAGCGGGTCAT 62.163 66.667 14.44 0.00 46.38 3.06
2847 8120 4.821589 CAGGAAGCCGAGCGGGTC 62.822 72.222 14.44 7.86 46.38 4.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.