Multiple sequence alignment - TraesCS6B01G067000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G067000 chr6B 100.000 2646 0 0 1 2646 45164880 45162235 0.000000e+00 4887.0
1 TraesCS6B01G067000 chr6B 89.886 880 77 8 884 1759 44970424 44969553 0.000000e+00 1122.0
2 TraesCS6B01G067000 chr6B 90.248 564 49 5 1195 1755 45039007 45038447 0.000000e+00 732.0
3 TraesCS6B01G067000 chr6B 90.248 564 49 5 1195 1755 45085707 45085147 0.000000e+00 732.0
4 TraesCS6B01G067000 chr6B 79.797 886 146 23 882 1753 45516602 45515736 4.840000e-172 614.0
5 TraesCS6B01G067000 chr6B 84.219 602 88 4 1779 2377 716541533 716540936 1.770000e-161 579.0
6 TraesCS6B01G067000 chr6B 84.167 600 88 4 1779 2375 707617172 707617767 2.280000e-160 575.0
7 TraesCS6B01G067000 chr6B 84.957 585 62 18 737 1313 44845717 44845151 1.060000e-158 569.0
8 TraesCS6B01G067000 chr6B 82.506 423 42 16 1340 1758 44845005 44844611 2.520000e-90 342.0
9 TraesCS6B01G067000 chr6B 78.144 485 79 23 1258 1737 45566017 45565555 1.550000e-72 283.0
10 TraesCS6B01G067000 chr6B 78.834 326 50 16 342 651 130312059 130311737 4.470000e-48 202.0
11 TraesCS6B01G067000 chrUn 90.758 844 71 6 918 1759 94919054 94918216 0.000000e+00 1120.0
12 TraesCS6B01G067000 chrUn 84.122 951 88 27 821 1759 94906362 94905463 0.000000e+00 861.0
13 TraesCS6B01G067000 chrUn 84.772 591 83 4 1779 2366 89532407 89532993 1.060000e-163 586.0
14 TraesCS6B01G067000 chrUn 86.611 478 60 3 891 1368 94951050 94950577 2.330000e-145 525.0
15 TraesCS6B01G067000 chrUn 92.241 116 6 3 729 841 94919171 94919056 7.580000e-36 161.0
16 TraesCS6B01G067000 chr6A 89.840 876 78 7 888 1759 25800673 25799805 0.000000e+00 1114.0
17 TraesCS6B01G067000 chr6A 82.461 382 41 9 1380 1759 25797536 25797179 7.110000e-81 311.0
18 TraesCS6B01G067000 chr5A 80.070 863 146 22 883 1733 45379544 45378696 3.740000e-173 617.0
19 TraesCS6B01G067000 chr5B 77.101 1166 196 56 601 1752 61211708 61212816 2.250000e-170 608.0
20 TraesCS6B01G067000 chr5B 85.279 591 81 3 1779 2366 311547279 311547866 2.910000e-169 604.0
21 TraesCS6B01G067000 chr5B 79.819 332 43 20 342 654 699324720 699324394 1.230000e-53 220.0
22 TraesCS6B01G067000 chr6D 84.704 608 84 5 1777 2379 106077869 106077266 1.360000e-167 599.0
23 TraesCS6B01G067000 chr1D 84.448 598 89 3 1779 2373 357447914 357448510 1.060000e-163 586.0
24 TraesCS6B01G067000 chr4D 84.245 603 88 5 1779 2379 87960770 87960173 4.910000e-162 580.0
25 TraesCS6B01G067000 chr7D 84.459 592 86 4 1779 2366 632120839 632121428 1.770000e-161 579.0
26 TraesCS6B01G067000 chr7D 83.914 603 92 3 1779 2377 133887527 133886926 2.950000e-159 571.0
27 TraesCS6B01G067000 chr5D 83.366 517 71 12 924 1436 57069160 57068655 5.160000e-127 464.0
28 TraesCS6B01G067000 chr3B 79.299 314 47 14 342 642 696518322 696518630 1.240000e-48 204.0
29 TraesCS6B01G067000 chr3B 79.931 289 44 12 342 619 72325627 72325912 1.610000e-47 200.0
30 TraesCS6B01G067000 chr3B 79.233 313 46 15 342 642 433607438 433607743 1.610000e-47 200.0
31 TraesCS6B01G067000 chr3B 78.616 318 54 11 337 643 494324170 494323856 5.780000e-47 198.0
32 TraesCS6B01G067000 chr3B 79.795 292 44 12 342 621 741456216 741456504 5.780000e-47 198.0
33 TraesCS6B01G067000 chr4A 80.357 280 41 11 342 610 735363323 735363047 1.610000e-47 200.0
34 TraesCS6B01G067000 chr4A 80.364 275 40 11 342 605 15946557 15946286 2.080000e-46 196.0
35 TraesCS6B01G067000 chr7B 100.000 31 0 0 2607 2637 612824530 612824560 1.020000e-04 58.4
36 TraesCS6B01G067000 chr7B 92.308 39 1 1 2601 2637 525621144 525621106 1.000000e-03 54.7
37 TraesCS6B01G067000 chr7B 92.308 39 1 1 2601 2637 525688016 525687978 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G067000 chr6B 45162235 45164880 2645 True 4887.0 4887 100.0000 1 2646 1 chr6B.!!$R4 2645
1 TraesCS6B01G067000 chr6B 44969553 44970424 871 True 1122.0 1122 89.8860 884 1759 1 chr6B.!!$R1 875
2 TraesCS6B01G067000 chr6B 45038447 45039007 560 True 732.0 732 90.2480 1195 1755 1 chr6B.!!$R2 560
3 TraesCS6B01G067000 chr6B 45085147 45085707 560 True 732.0 732 90.2480 1195 1755 1 chr6B.!!$R3 560
4 TraesCS6B01G067000 chr6B 45515736 45516602 866 True 614.0 614 79.7970 882 1753 1 chr6B.!!$R5 871
5 TraesCS6B01G067000 chr6B 716540936 716541533 597 True 579.0 579 84.2190 1779 2377 1 chr6B.!!$R8 598
6 TraesCS6B01G067000 chr6B 707617172 707617767 595 False 575.0 575 84.1670 1779 2375 1 chr6B.!!$F1 596
7 TraesCS6B01G067000 chr6B 44844611 44845717 1106 True 455.5 569 83.7315 737 1758 2 chr6B.!!$R9 1021
8 TraesCS6B01G067000 chrUn 94905463 94906362 899 True 861.0 861 84.1220 821 1759 1 chrUn.!!$R1 938
9 TraesCS6B01G067000 chrUn 94918216 94919171 955 True 640.5 1120 91.4995 729 1759 2 chrUn.!!$R3 1030
10 TraesCS6B01G067000 chrUn 89532407 89532993 586 False 586.0 586 84.7720 1779 2366 1 chrUn.!!$F1 587
11 TraesCS6B01G067000 chr6A 25797179 25800673 3494 True 712.5 1114 86.1505 888 1759 2 chr6A.!!$R1 871
12 TraesCS6B01G067000 chr5A 45378696 45379544 848 True 617.0 617 80.0700 883 1733 1 chr5A.!!$R1 850
13 TraesCS6B01G067000 chr5B 61211708 61212816 1108 False 608.0 608 77.1010 601 1752 1 chr5B.!!$F1 1151
14 TraesCS6B01G067000 chr5B 311547279 311547866 587 False 604.0 604 85.2790 1779 2366 1 chr5B.!!$F2 587
15 TraesCS6B01G067000 chr6D 106077266 106077869 603 True 599.0 599 84.7040 1777 2379 1 chr6D.!!$R1 602
16 TraesCS6B01G067000 chr1D 357447914 357448510 596 False 586.0 586 84.4480 1779 2373 1 chr1D.!!$F1 594
17 TraesCS6B01G067000 chr4D 87960173 87960770 597 True 580.0 580 84.2450 1779 2379 1 chr4D.!!$R1 600
18 TraesCS6B01G067000 chr7D 632120839 632121428 589 False 579.0 579 84.4590 1779 2366 1 chr7D.!!$F1 587
19 TraesCS6B01G067000 chr7D 133886926 133887527 601 True 571.0 571 83.9140 1779 2377 1 chr7D.!!$R1 598
20 TraesCS6B01G067000 chr5D 57068655 57069160 505 True 464.0 464 83.3660 924 1436 1 chr5D.!!$R1 512

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
103 104 0.033228 CGCCCAGACATGAGGAGATC 59.967 60.0 0.0 0.0 0.0 2.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1944 2139 0.179169 GGGACTTAGCACGACGACTC 60.179 60.0 0.0 0.0 0.0 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 3.264897 GCCGCCACGTCTATGCAG 61.265 66.667 0.00 0.00 0.00 4.41
34 35 2.494445 CCGCCACGTCTATGCAGA 59.506 61.111 0.00 0.00 0.00 4.26
35 36 1.589993 CCGCCACGTCTATGCAGAG 60.590 63.158 0.69 0.69 0.00 3.35
36 37 1.589993 CGCCACGTCTATGCAGAGG 60.590 63.158 8.78 1.13 41.49 3.69
37 38 1.816537 GCCACGTCTATGCAGAGGA 59.183 57.895 8.78 0.00 38.67 3.71
38 39 0.175760 GCCACGTCTATGCAGAGGAA 59.824 55.000 8.78 0.00 38.67 3.36
39 40 1.804372 GCCACGTCTATGCAGAGGAAG 60.804 57.143 8.78 2.96 38.67 3.46
40 41 1.565305 CACGTCTATGCAGAGGAAGC 58.435 55.000 8.78 0.00 38.67 3.86
42 43 1.134965 ACGTCTATGCAGAGGAAGCAC 60.135 52.381 8.78 0.00 45.95 4.40
43 44 1.565305 GTCTATGCAGAGGAAGCACG 58.435 55.000 8.78 0.00 45.95 5.34
44 45 0.179100 TCTATGCAGAGGAAGCACGC 60.179 55.000 8.78 0.00 45.95 5.34
45 46 1.153369 TATGCAGAGGAAGCACGCC 60.153 57.895 0.00 0.00 45.95 5.68
46 47 1.898330 TATGCAGAGGAAGCACGCCA 61.898 55.000 0.00 0.00 45.95 5.69
47 48 3.123620 GCAGAGGAAGCACGCCAG 61.124 66.667 0.00 0.00 0.00 4.85
48 49 2.659016 CAGAGGAAGCACGCCAGA 59.341 61.111 0.00 0.00 0.00 3.86
49 50 1.739562 CAGAGGAAGCACGCCAGAC 60.740 63.158 0.00 0.00 0.00 3.51
50 51 2.435059 GAGGAAGCACGCCAGACC 60.435 66.667 0.00 0.00 0.00 3.85
51 52 4.379243 AGGAAGCACGCCAGACCG 62.379 66.667 0.00 0.00 0.00 4.79
94 95 4.457496 CGCTCCACGCCCAGACAT 62.457 66.667 0.00 0.00 34.21 3.06
95 96 2.821366 GCTCCACGCCCAGACATG 60.821 66.667 0.00 0.00 0.00 3.21
96 97 2.981302 CTCCACGCCCAGACATGA 59.019 61.111 0.00 0.00 0.00 3.07
97 98 1.153489 CTCCACGCCCAGACATGAG 60.153 63.158 0.00 0.00 0.00 2.90
98 99 2.124983 CCACGCCCAGACATGAGG 60.125 66.667 0.00 0.00 0.00 3.86
99 100 2.659063 CCACGCCCAGACATGAGGA 61.659 63.158 0.00 0.00 0.00 3.71
100 101 1.153489 CACGCCCAGACATGAGGAG 60.153 63.158 0.00 0.00 0.00 3.69
101 102 1.305297 ACGCCCAGACATGAGGAGA 60.305 57.895 0.00 0.00 0.00 3.71
102 103 0.689080 ACGCCCAGACATGAGGAGAT 60.689 55.000 0.00 0.00 0.00 2.75
103 104 0.033228 CGCCCAGACATGAGGAGATC 59.967 60.000 0.00 0.00 0.00 2.75
104 105 0.033228 GCCCAGACATGAGGAGATCG 59.967 60.000 0.00 0.00 0.00 3.69
105 106 0.678395 CCCAGACATGAGGAGATCGG 59.322 60.000 0.00 0.00 0.00 4.18
106 107 1.407936 CCAGACATGAGGAGATCGGT 58.592 55.000 0.00 0.00 0.00 4.69
107 108 1.339610 CCAGACATGAGGAGATCGGTC 59.660 57.143 0.00 0.00 35.92 4.79
108 109 1.001924 CAGACATGAGGAGATCGGTCG 60.002 57.143 0.00 0.00 38.92 4.79
109 110 1.025812 GACATGAGGAGATCGGTCGT 58.974 55.000 0.00 0.00 0.00 4.34
110 111 0.741326 ACATGAGGAGATCGGTCGTG 59.259 55.000 0.00 10.81 34.06 4.35
111 112 0.596083 CATGAGGAGATCGGTCGTGC 60.596 60.000 0.00 0.00 0.00 5.34
112 113 1.739338 ATGAGGAGATCGGTCGTGCC 61.739 60.000 0.00 0.00 0.00 5.01
136 137 2.985456 CCTCGCAAGGGAGAAGCT 59.015 61.111 14.84 0.00 44.69 3.74
137 138 2.202866 CCTCGCAAGGGAGAAGCTA 58.797 57.895 14.84 0.00 44.69 3.32
138 139 0.537188 CCTCGCAAGGGAGAAGCTAA 59.463 55.000 14.84 0.00 44.69 3.09
139 140 1.472376 CCTCGCAAGGGAGAAGCTAAG 60.472 57.143 14.84 0.00 44.69 2.18
140 141 0.108138 TCGCAAGGGAGAAGCTAAGC 60.108 55.000 0.00 0.00 38.47 3.09
141 142 1.092345 CGCAAGGGAGAAGCTAAGCC 61.092 60.000 0.00 0.00 0.00 4.35
142 143 0.749818 GCAAGGGAGAAGCTAAGCCC 60.750 60.000 9.15 9.15 41.00 5.19
143 144 0.106967 CAAGGGAGAAGCTAAGCCCC 60.107 60.000 12.65 9.12 41.65 5.80
144 145 1.627297 AAGGGAGAAGCTAAGCCCCG 61.627 60.000 12.65 0.00 41.65 5.73
145 146 2.203084 GGAGAAGCTAAGCCCCGC 60.203 66.667 0.00 0.00 0.00 6.13
146 147 2.203084 GAGAAGCTAAGCCCCGCC 60.203 66.667 0.00 0.00 0.00 6.13
147 148 4.162690 AGAAGCTAAGCCCCGCCG 62.163 66.667 0.00 0.00 0.00 6.46
210 211 4.779733 GGCGAGGGTGGAGGAGGA 62.780 72.222 0.00 0.00 0.00 3.71
211 212 2.683933 GCGAGGGTGGAGGAGGAA 60.684 66.667 0.00 0.00 0.00 3.36
212 213 2.726351 GCGAGGGTGGAGGAGGAAG 61.726 68.421 0.00 0.00 0.00 3.46
213 214 2.060980 CGAGGGTGGAGGAGGAAGG 61.061 68.421 0.00 0.00 0.00 3.46
214 215 1.690985 GAGGGTGGAGGAGGAAGGG 60.691 68.421 0.00 0.00 0.00 3.95
215 216 2.692741 GGGTGGAGGAGGAAGGGG 60.693 72.222 0.00 0.00 0.00 4.79
216 217 2.692741 GGTGGAGGAGGAAGGGGG 60.693 72.222 0.00 0.00 0.00 5.40
217 218 2.454941 GTGGAGGAGGAAGGGGGA 59.545 66.667 0.00 0.00 0.00 4.81
218 219 1.690985 GTGGAGGAGGAAGGGGGAG 60.691 68.421 0.00 0.00 0.00 4.30
219 220 2.040359 GGAGGAGGAAGGGGGAGG 60.040 72.222 0.00 0.00 0.00 4.30
220 221 2.040359 GAGGAGGAAGGGGGAGGG 60.040 72.222 0.00 0.00 0.00 4.30
221 222 2.543637 AGGAGGAAGGGGGAGGGA 60.544 66.667 0.00 0.00 0.00 4.20
222 223 2.040359 GGAGGAAGGGGGAGGGAG 60.040 72.222 0.00 0.00 0.00 4.30
223 224 2.040359 GAGGAAGGGGGAGGGAGG 60.040 72.222 0.00 0.00 0.00 4.30
224 225 4.439901 AGGAAGGGGGAGGGAGGC 62.440 72.222 0.00 0.00 0.00 4.70
225 226 4.439901 GGAAGGGGGAGGGAGGCT 62.440 72.222 0.00 0.00 0.00 4.58
226 227 3.093172 GAAGGGGGAGGGAGGCTG 61.093 72.222 0.00 0.00 0.00 4.85
227 228 4.767892 AAGGGGGAGGGAGGCTGG 62.768 72.222 0.00 0.00 0.00 4.85
237 238 3.483869 GAGGCTGGGGCGGAGATT 61.484 66.667 0.00 0.00 39.81 2.40
238 239 3.764160 GAGGCTGGGGCGGAGATTG 62.764 68.421 0.00 0.00 39.81 2.67
239 240 4.883354 GGCTGGGGCGGAGATTGG 62.883 72.222 0.00 0.00 39.81 3.16
240 241 3.797353 GCTGGGGCGGAGATTGGA 61.797 66.667 0.00 0.00 0.00 3.53
241 242 2.507944 CTGGGGCGGAGATTGGAG 59.492 66.667 0.00 0.00 0.00 3.86
242 243 3.089874 TGGGGCGGAGATTGGAGG 61.090 66.667 0.00 0.00 0.00 4.30
243 244 4.570874 GGGGCGGAGATTGGAGGC 62.571 72.222 0.00 0.00 0.00 4.70
244 245 4.570874 GGGCGGAGATTGGAGGCC 62.571 72.222 0.00 0.00 43.01 5.19
245 246 4.570874 GGCGGAGATTGGAGGCCC 62.571 72.222 0.00 0.00 37.82 5.80
246 247 3.483869 GCGGAGATTGGAGGCCCT 61.484 66.667 0.00 0.00 0.00 5.19
247 248 2.825264 CGGAGATTGGAGGCCCTC 59.175 66.667 0.73 0.73 0.00 4.30
287 288 3.858634 CGGGGGAGGGGATAGGGT 61.859 72.222 0.00 0.00 0.00 4.34
288 289 2.207478 GGGGGAGGGGATAGGGTC 59.793 72.222 0.00 0.00 0.00 4.46
289 290 2.203803 GGGGAGGGGATAGGGTCG 60.204 72.222 0.00 0.00 0.00 4.79
290 291 2.203803 GGGAGGGGATAGGGTCGG 60.204 72.222 0.00 0.00 0.00 4.79
291 292 2.203803 GGAGGGGATAGGGTCGGG 60.204 72.222 0.00 0.00 0.00 5.14
292 293 2.203803 GAGGGGATAGGGTCGGGG 60.204 72.222 0.00 0.00 0.00 5.73
293 294 3.848252 GAGGGGATAGGGTCGGGGG 62.848 73.684 0.00 0.00 0.00 5.40
294 295 3.853660 GGGGATAGGGTCGGGGGA 61.854 72.222 0.00 0.00 0.00 4.81
295 296 2.287946 GGGATAGGGTCGGGGGAA 59.712 66.667 0.00 0.00 0.00 3.97
296 297 1.842010 GGGATAGGGTCGGGGGAAG 60.842 68.421 0.00 0.00 0.00 3.46
297 298 1.842010 GGATAGGGTCGGGGGAAGG 60.842 68.421 0.00 0.00 0.00 3.46
298 299 1.842010 GATAGGGTCGGGGGAAGGG 60.842 68.421 0.00 0.00 0.00 3.95
299 300 2.322252 GATAGGGTCGGGGGAAGGGA 62.322 65.000 0.00 0.00 0.00 4.20
300 301 1.686060 ATAGGGTCGGGGGAAGGGAT 61.686 60.000 0.00 0.00 0.00 3.85
301 302 2.322252 TAGGGTCGGGGGAAGGGATC 62.322 65.000 0.00 0.00 0.00 3.36
302 303 2.040779 GGTCGGGGGAAGGGATCT 60.041 66.667 0.00 0.00 0.00 2.75
303 304 2.141448 GGTCGGGGGAAGGGATCTC 61.141 68.421 0.00 0.00 0.00 2.75
304 305 1.075151 GTCGGGGGAAGGGATCTCT 60.075 63.158 0.00 0.00 0.00 3.10
305 306 1.116536 GTCGGGGGAAGGGATCTCTC 61.117 65.000 0.00 0.00 0.00 3.20
306 307 1.075226 CGGGGGAAGGGATCTCTCA 60.075 63.158 0.00 0.00 0.00 3.27
307 308 0.472734 CGGGGGAAGGGATCTCTCAT 60.473 60.000 0.00 0.00 0.00 2.90
308 309 1.063183 GGGGGAAGGGATCTCTCATG 58.937 60.000 0.00 0.00 0.00 3.07
309 310 1.063183 GGGGAAGGGATCTCTCATGG 58.937 60.000 0.00 0.00 0.00 3.66
310 311 1.697291 GGGGAAGGGATCTCTCATGGT 60.697 57.143 0.00 0.00 0.00 3.55
311 312 1.419387 GGGAAGGGATCTCTCATGGTG 59.581 57.143 0.00 0.00 0.00 4.17
312 313 1.202746 GGAAGGGATCTCTCATGGTGC 60.203 57.143 0.00 0.00 0.00 5.01
313 314 0.467384 AAGGGATCTCTCATGGTGCG 59.533 55.000 0.00 0.00 0.00 5.34
314 315 0.689080 AGGGATCTCTCATGGTGCGT 60.689 55.000 0.00 0.00 0.00 5.24
315 316 0.249657 GGGATCTCTCATGGTGCGTC 60.250 60.000 0.00 0.00 0.00 5.19
316 317 0.749649 GGATCTCTCATGGTGCGTCT 59.250 55.000 0.00 0.00 0.00 4.18
317 318 1.269517 GGATCTCTCATGGTGCGTCTC 60.270 57.143 0.00 0.00 0.00 3.36
318 319 1.406898 GATCTCTCATGGTGCGTCTCA 59.593 52.381 0.00 0.00 0.00 3.27
319 320 1.256812 TCTCTCATGGTGCGTCTCAA 58.743 50.000 0.00 0.00 0.00 3.02
320 321 1.203287 TCTCTCATGGTGCGTCTCAAG 59.797 52.381 0.00 0.00 0.00 3.02
321 322 0.247460 TCTCATGGTGCGTCTCAAGG 59.753 55.000 0.00 0.00 0.00 3.61
322 323 0.247460 CTCATGGTGCGTCTCAAGGA 59.753 55.000 0.00 0.00 0.00 3.36
323 324 0.684535 TCATGGTGCGTCTCAAGGAA 59.315 50.000 0.00 0.00 0.00 3.36
324 325 1.071542 TCATGGTGCGTCTCAAGGAAA 59.928 47.619 0.00 0.00 0.00 3.13
325 326 1.466167 CATGGTGCGTCTCAAGGAAAG 59.534 52.381 0.00 0.00 0.00 2.62
326 327 0.884704 TGGTGCGTCTCAAGGAAAGC 60.885 55.000 0.00 0.00 0.00 3.51
327 328 1.493311 GTGCGTCTCAAGGAAAGCG 59.507 57.895 0.00 0.00 34.18 4.68
328 329 1.667830 TGCGTCTCAAGGAAAGCGG 60.668 57.895 0.00 0.00 34.18 5.52
329 330 1.374252 GCGTCTCAAGGAAAGCGGA 60.374 57.895 0.00 0.00 0.00 5.54
330 331 0.741221 GCGTCTCAAGGAAAGCGGAT 60.741 55.000 0.00 0.00 0.00 4.18
331 332 1.726853 CGTCTCAAGGAAAGCGGATT 58.273 50.000 0.00 0.00 0.00 3.01
332 333 2.076863 CGTCTCAAGGAAAGCGGATTT 58.923 47.619 0.00 0.00 0.00 2.17
333 334 2.484264 CGTCTCAAGGAAAGCGGATTTT 59.516 45.455 0.00 0.00 0.00 1.82
334 335 3.058224 CGTCTCAAGGAAAGCGGATTTTT 60.058 43.478 0.00 0.00 0.00 1.94
335 336 4.476862 GTCTCAAGGAAAGCGGATTTTTC 58.523 43.478 0.00 0.00 34.55 2.29
336 337 4.023193 GTCTCAAGGAAAGCGGATTTTTCA 60.023 41.667 0.00 0.00 36.50 2.69
337 338 4.766891 TCTCAAGGAAAGCGGATTTTTCAT 59.233 37.500 0.00 0.00 36.50 2.57
338 339 5.943416 TCTCAAGGAAAGCGGATTTTTCATA 59.057 36.000 0.00 0.00 36.50 2.15
339 340 6.603201 TCTCAAGGAAAGCGGATTTTTCATAT 59.397 34.615 0.00 0.00 36.50 1.78
340 341 6.563422 TCAAGGAAAGCGGATTTTTCATATG 58.437 36.000 0.00 0.00 36.50 1.78
341 342 6.376864 TCAAGGAAAGCGGATTTTTCATATGA 59.623 34.615 0.00 0.00 36.50 2.15
342 343 6.382869 AGGAAAGCGGATTTTTCATATGAG 57.617 37.500 5.39 0.00 36.50 2.90
343 344 6.122277 AGGAAAGCGGATTTTTCATATGAGA 58.878 36.000 5.39 0.00 36.50 3.27
344 345 6.774656 AGGAAAGCGGATTTTTCATATGAGAT 59.225 34.615 5.39 2.10 36.50 2.75
345 346 7.939039 AGGAAAGCGGATTTTTCATATGAGATA 59.061 33.333 5.39 0.00 36.50 1.98
346 347 8.734386 GGAAAGCGGATTTTTCATATGAGATAT 58.266 33.333 5.39 2.26 36.50 1.63
350 351 9.288576 AGCGGATTTTTCATATGAGATATTTCA 57.711 29.630 5.39 0.00 0.00 2.69
351 352 9.897744 GCGGATTTTTCATATGAGATATTTCAA 57.102 29.630 5.39 0.00 0.00 2.69
359 360 8.985315 TCATATGAGATATTTCAAGGCAAACT 57.015 30.769 0.00 0.00 0.00 2.66
362 363 9.851686 ATATGAGATATTTCAAGGCAAACTACA 57.148 29.630 0.00 0.00 0.00 2.74
363 364 8.757982 ATGAGATATTTCAAGGCAAACTACAT 57.242 30.769 0.00 0.00 0.00 2.29
364 365 7.988737 TGAGATATTTCAAGGCAAACTACATG 58.011 34.615 0.00 0.00 0.00 3.21
365 366 7.828717 TGAGATATTTCAAGGCAAACTACATGA 59.171 33.333 0.00 0.00 0.00 3.07
366 367 8.579850 AGATATTTCAAGGCAAACTACATGAA 57.420 30.769 0.00 0.00 0.00 2.57
367 368 9.023962 AGATATTTCAAGGCAAACTACATGAAA 57.976 29.630 0.00 0.00 40.01 2.69
368 369 9.638239 GATATTTCAAGGCAAACTACATGAAAA 57.362 29.630 0.00 0.00 39.40 2.29
369 370 9.995003 ATATTTCAAGGCAAACTACATGAAAAA 57.005 25.926 0.00 0.00 39.40 1.94
370 371 8.907222 ATTTCAAGGCAAACTACATGAAAAAT 57.093 26.923 0.00 0.00 39.40 1.82
371 372 9.995003 ATTTCAAGGCAAACTACATGAAAAATA 57.005 25.926 0.00 0.00 39.40 1.40
372 373 9.995003 TTTCAAGGCAAACTACATGAAAAATAT 57.005 25.926 0.00 0.00 34.80 1.28
373 374 9.995003 TTCAAGGCAAACTACATGAAAAATATT 57.005 25.926 0.00 0.00 0.00 1.28
374 375 9.638239 TCAAGGCAAACTACATGAAAAATATTC 57.362 29.630 0.00 0.00 0.00 1.75
375 376 8.586273 CAAGGCAAACTACATGAAAAATATTCG 58.414 33.333 0.00 0.00 0.00 3.34
376 377 7.826690 AGGCAAACTACATGAAAAATATTCGT 58.173 30.769 0.00 0.00 0.00 3.85
377 378 7.754924 AGGCAAACTACATGAAAAATATTCGTG 59.245 33.333 0.00 8.45 40.34 4.35
378 379 7.383361 GCAAACTACATGAAAAATATTCGTGC 58.617 34.615 0.00 0.00 38.62 5.34
379 380 7.591407 CAAACTACATGAAAAATATTCGTGCG 58.409 34.615 0.00 5.06 38.62 5.34
380 381 6.656314 ACTACATGAAAAATATTCGTGCGA 57.344 33.333 0.00 0.00 38.62 5.10
381 382 6.705782 ACTACATGAAAAATATTCGTGCGAG 58.294 36.000 0.00 9.60 38.62 5.03
382 383 5.545658 ACATGAAAAATATTCGTGCGAGT 57.454 34.783 0.00 0.00 38.62 4.18
383 384 5.560148 ACATGAAAAATATTCGTGCGAGTC 58.440 37.500 0.00 0.00 38.62 3.36
384 385 4.593597 TGAAAAATATTCGTGCGAGTCC 57.406 40.909 0.00 0.00 0.00 3.85
385 386 3.997681 TGAAAAATATTCGTGCGAGTCCA 59.002 39.130 0.00 0.00 0.00 4.02
386 387 4.634004 TGAAAAATATTCGTGCGAGTCCAT 59.366 37.500 0.00 0.00 0.00 3.41
387 388 5.813157 TGAAAAATATTCGTGCGAGTCCATA 59.187 36.000 0.00 0.00 0.00 2.74
388 389 5.907197 AAAATATTCGTGCGAGTCCATAG 57.093 39.130 0.00 0.00 0.00 2.23
389 390 4.585955 AATATTCGTGCGAGTCCATAGT 57.414 40.909 0.00 0.00 0.00 2.12
390 391 2.961526 ATTCGTGCGAGTCCATAGTT 57.038 45.000 0.00 0.00 0.00 2.24
391 392 2.736144 TTCGTGCGAGTCCATAGTTT 57.264 45.000 0.00 0.00 0.00 2.66
392 393 2.736144 TCGTGCGAGTCCATAGTTTT 57.264 45.000 0.00 0.00 0.00 2.43
393 394 3.034721 TCGTGCGAGTCCATAGTTTTT 57.965 42.857 0.00 0.00 0.00 1.94
394 395 2.734606 TCGTGCGAGTCCATAGTTTTTG 59.265 45.455 0.00 0.00 0.00 2.44
395 396 2.478894 CGTGCGAGTCCATAGTTTTTGT 59.521 45.455 0.00 0.00 0.00 2.83
396 397 3.676172 CGTGCGAGTCCATAGTTTTTGTA 59.324 43.478 0.00 0.00 0.00 2.41
397 398 4.328983 CGTGCGAGTCCATAGTTTTTGTAT 59.671 41.667 0.00 0.00 0.00 2.29
398 399 5.517411 CGTGCGAGTCCATAGTTTTTGTATA 59.483 40.000 0.00 0.00 0.00 1.47
399 400 6.200286 CGTGCGAGTCCATAGTTTTTGTATAT 59.800 38.462 0.00 0.00 0.00 0.86
400 401 7.254319 CGTGCGAGTCCATAGTTTTTGTATATT 60.254 37.037 0.00 0.00 0.00 1.28
401 402 8.395633 GTGCGAGTCCATAGTTTTTGTATATTT 58.604 33.333 0.00 0.00 0.00 1.40
402 403 8.952278 TGCGAGTCCATAGTTTTTGTATATTTT 58.048 29.630 0.00 0.00 0.00 1.82
403 404 9.221775 GCGAGTCCATAGTTTTTGTATATTTTG 57.778 33.333 0.00 0.00 0.00 2.44
466 467 9.981114 AAAAACAGTGCATAATAGCTAAAAAGT 57.019 25.926 0.00 0.00 34.99 2.66
470 471 9.613428 ACAGTGCATAATAGCTAAAAAGTATGA 57.387 29.630 0.00 0.00 34.99 2.15
523 524 9.566530 ACTACATACTACACGTATATACTCTCG 57.433 37.037 11.05 0.46 36.69 4.04
524 525 9.780413 CTACATACTACACGTATATACTCTCGA 57.220 37.037 11.05 0.00 36.69 4.04
526 527 9.650539 ACATACTACACGTATATACTCTCGATT 57.349 33.333 11.05 0.00 36.69 3.34
530 531 9.049523 ACTACACGTATATACTCTCGATTTTCA 57.950 33.333 11.05 0.00 0.00 2.69
539 540 5.562506 ACTCTCGATTTTCATAGACACGA 57.437 39.130 0.00 0.00 0.00 4.35
540 541 5.950883 ACTCTCGATTTTCATAGACACGAA 58.049 37.500 0.00 0.00 0.00 3.85
541 542 6.387465 ACTCTCGATTTTCATAGACACGAAA 58.613 36.000 0.00 0.00 0.00 3.46
542 543 7.036220 ACTCTCGATTTTCATAGACACGAAAT 58.964 34.615 0.00 0.00 31.54 2.17
543 544 8.188799 ACTCTCGATTTTCATAGACACGAAATA 58.811 33.333 0.00 0.00 31.54 1.40
544 545 8.336498 TCTCGATTTTCATAGACACGAAATAC 57.664 34.615 0.00 0.00 31.54 1.89
545 546 7.971722 TCTCGATTTTCATAGACACGAAATACA 59.028 33.333 0.00 0.00 31.54 2.29
546 547 8.468720 TCGATTTTCATAGACACGAAATACAA 57.531 30.769 0.00 0.00 31.54 2.41
547 548 8.377681 TCGATTTTCATAGACACGAAATACAAC 58.622 33.333 0.00 0.00 31.54 3.32
548 549 8.166066 CGATTTTCATAGACACGAAATACAACA 58.834 33.333 0.00 0.00 31.54 3.33
549 550 9.988350 GATTTTCATAGACACGAAATACAACAT 57.012 29.630 0.00 0.00 31.54 2.71
568 569 8.662781 ACAACATATAAAACTCATATGAGCGT 57.337 30.769 28.86 16.51 45.79 5.07
569 570 9.758651 ACAACATATAAAACTCATATGAGCGTA 57.241 29.630 28.86 19.07 45.79 4.42
572 573 9.982651 ACATATAAAACTCATATGAGCGTAACT 57.017 29.630 28.86 13.98 45.79 2.24
576 577 7.948278 AAAACTCATATGAGCGTAACTATCC 57.052 36.000 28.86 0.00 45.79 2.59
577 578 5.646577 ACTCATATGAGCGTAACTATCCC 57.353 43.478 28.86 0.00 45.79 3.85
578 579 5.326069 ACTCATATGAGCGTAACTATCCCT 58.674 41.667 28.86 5.35 45.79 4.20
579 580 5.184096 ACTCATATGAGCGTAACTATCCCTG 59.816 44.000 28.86 4.52 45.79 4.45
580 581 4.462834 TCATATGAGCGTAACTATCCCTGG 59.537 45.833 0.00 0.00 0.00 4.45
581 582 2.154567 TGAGCGTAACTATCCCTGGT 57.845 50.000 0.00 0.00 0.00 4.00
582 583 3.301794 TGAGCGTAACTATCCCTGGTA 57.698 47.619 0.00 0.00 0.00 3.25
583 584 3.220110 TGAGCGTAACTATCCCTGGTAG 58.780 50.000 0.00 0.00 0.00 3.18
584 585 2.557490 GAGCGTAACTATCCCTGGTAGG 59.443 54.545 0.00 0.00 34.30 3.18
585 586 2.176364 AGCGTAACTATCCCTGGTAGGA 59.824 50.000 0.00 0.00 37.67 2.94
586 587 2.961062 GCGTAACTATCCCTGGTAGGAA 59.039 50.000 0.00 0.00 40.04 3.36
587 588 3.385755 GCGTAACTATCCCTGGTAGGAAA 59.614 47.826 0.00 0.00 40.04 3.13
588 589 4.738839 GCGTAACTATCCCTGGTAGGAAAC 60.739 50.000 0.00 0.00 40.04 2.78
589 590 4.403432 CGTAACTATCCCTGGTAGGAAACA 59.597 45.833 0.00 0.00 40.04 2.83
590 591 5.070047 CGTAACTATCCCTGGTAGGAAACAT 59.930 44.000 0.00 0.00 40.04 2.71
591 592 6.407752 CGTAACTATCCCTGGTAGGAAACATT 60.408 42.308 0.00 0.00 40.04 2.71
592 593 6.402981 AACTATCCCTGGTAGGAAACATTT 57.597 37.500 0.00 0.00 40.04 2.32
593 594 5.755849 ACTATCCCTGGTAGGAAACATTTG 58.244 41.667 0.00 0.00 40.04 2.32
594 595 4.675063 ATCCCTGGTAGGAAACATTTGT 57.325 40.909 0.00 0.00 40.04 2.83
595 596 4.028993 TCCCTGGTAGGAAACATTTGTC 57.971 45.455 0.00 0.00 37.67 3.18
596 597 3.396276 TCCCTGGTAGGAAACATTTGTCA 59.604 43.478 0.00 0.00 37.67 3.58
597 598 4.044065 TCCCTGGTAGGAAACATTTGTCAT 59.956 41.667 0.00 0.00 37.67 3.06
598 599 5.251932 TCCCTGGTAGGAAACATTTGTCATA 59.748 40.000 0.00 0.00 37.67 2.15
599 600 6.069088 TCCCTGGTAGGAAACATTTGTCATAT 60.069 38.462 0.00 0.00 37.67 1.78
724 725 9.403583 TGGTTCCAATTAATGTATTCTAAGTCC 57.596 33.333 0.00 0.00 0.00 3.85
841 872 2.370189 CTCCTCCTCTCTCTCTCTCTCC 59.630 59.091 0.00 0.00 0.00 3.71
850 881 3.426615 TCTCTCTCTCTCCGCTTCTTTT 58.573 45.455 0.00 0.00 0.00 2.27
857 888 4.590918 TCTCTCCGCTTCTTTTCTCTCTA 58.409 43.478 0.00 0.00 0.00 2.43
860 891 5.197451 TCTCCGCTTCTTTTCTCTCTATCT 58.803 41.667 0.00 0.00 0.00 1.98
862 893 5.197451 TCCGCTTCTTTTCTCTCTATCTCT 58.803 41.667 0.00 0.00 0.00 3.10
870 901 7.629157 TCTTTTCTCTCTATCTCTCACTCTCA 58.371 38.462 0.00 0.00 0.00 3.27
871 902 8.274322 TCTTTTCTCTCTATCTCTCACTCTCAT 58.726 37.037 0.00 0.00 0.00 2.90
1044 1085 0.109153 ATGCACCAACACTGCTCTCA 59.891 50.000 0.00 0.00 35.53 3.27
1209 1253 4.262036 CCCTCATCGCTGCAAACTAGTATA 60.262 45.833 0.00 0.00 0.00 1.47
1265 1311 5.414360 TGCTAGCTTGTTCTCTAGTTGATG 58.586 41.667 17.23 0.00 35.80 3.07
1345 1520 3.930336 TCGCCTTGCTAGATCCATAATG 58.070 45.455 0.00 0.00 0.00 1.90
1354 1529 5.012046 TGCTAGATCCATAATGGTCATTCGT 59.988 40.000 0.00 0.00 39.03 3.85
1378 1554 5.999205 TTGGTAACCAACGGAGTCTTATA 57.001 39.130 0.00 0.00 45.00 0.98
1379 1555 6.549433 TTGGTAACCAACGGAGTCTTATAT 57.451 37.500 0.00 0.00 45.00 0.86
1380 1556 5.909477 TGGTAACCAACGGAGTCTTATATG 58.091 41.667 0.00 0.00 45.00 1.78
1381 1557 5.163385 TGGTAACCAACGGAGTCTTATATGG 60.163 44.000 0.00 0.00 45.00 2.74
1382 1558 5.069516 GGTAACCAACGGAGTCTTATATGGA 59.930 44.000 0.00 0.00 45.00 3.41
1384 1560 6.989155 AACCAACGGAGTCTTATATGGATA 57.011 37.500 0.00 0.00 45.00 2.59
1436 1613 2.426738 GGCCGAATCATGGATGACAAAA 59.573 45.455 0.00 0.00 40.03 2.44
1484 1661 2.030946 GGATTGTGCGTGCATAAGAGTC 59.969 50.000 9.80 3.17 30.98 3.36
1555 1732 5.304686 ACCTCTGTTATGTTTCAGTGGAA 57.695 39.130 16.51 0.00 43.64 3.53
1578 1755 2.365823 GCATGGATGCGTGCAAAAG 58.634 52.632 24.71 0.00 44.67 2.27
1594 1774 8.947940 GCGTGCAAAAGTATATATTCTTCTTTG 58.052 33.333 5.20 8.10 0.00 2.77
1631 1811 2.054453 GCCCATCCTCCTTTGCCAC 61.054 63.158 0.00 0.00 0.00 5.01
1634 1814 1.693640 CATCCTCCTTTGCCACCCT 59.306 57.895 0.00 0.00 0.00 4.34
1663 1846 7.396907 ACATCCTGATCAATTTTATGGTGTTCA 59.603 33.333 0.00 0.00 0.00 3.18
1720 1906 8.162245 GCAATTTCGAAATAAAGGACAATGTTC 58.838 33.333 22.99 0.70 0.00 3.18
1755 1946 3.411446 TGATGAAGTTCAACCGCTCATT 58.589 40.909 10.14 0.00 0.00 2.57
1759 1950 3.380004 TGAAGTTCAACCGCTCATTGTTT 59.620 39.130 2.20 0.00 0.00 2.83
1760 1951 4.142271 TGAAGTTCAACCGCTCATTGTTTT 60.142 37.500 2.20 0.00 0.00 2.43
1761 1952 4.385358 AGTTCAACCGCTCATTGTTTTT 57.615 36.364 0.00 0.00 0.00 1.94
1788 1979 7.753309 TTCGGAAAAACTTCCATCTTCAATA 57.247 32.000 4.85 0.00 41.16 1.90
1805 1996 6.597672 TCTTCAATAATGGCAGTACAACGAAT 59.402 34.615 0.00 0.00 0.00 3.34
1863 2057 0.169672 TAGCGACGACTACAAGCACC 59.830 55.000 0.00 0.00 0.00 5.01
1936 2131 4.142902 CGGGCAAAACATGTTGTAGTAGAG 60.143 45.833 12.82 0.00 0.00 2.43
1944 2139 2.719739 TGTTGTAGTAGAGAGTCGGGG 58.280 52.381 0.00 0.00 0.00 5.73
1960 2155 1.593296 GGGGAGTCGTCGTGCTAAGT 61.593 60.000 0.00 0.00 0.00 2.24
1995 2190 0.740737 GCAACAGAACAGCAACCACT 59.259 50.000 0.00 0.00 0.00 4.00
2054 2252 8.397906 CAACTTGAAGACACAAGAACAAAGATA 58.602 33.333 14.00 0.00 46.85 1.98
2058 2256 8.275015 TGAAGACACAAGAACAAAGATAAACA 57.725 30.769 0.00 0.00 0.00 2.83
2104 2302 3.447586 CCAAAGACAGATCTACCGGAGAA 59.552 47.826 9.46 0.00 37.85 2.87
2108 2306 4.087182 AGACAGATCTACCGGAGAAACAA 58.913 43.478 9.46 0.00 37.85 2.83
2123 2321 0.185901 AACAACTCCACATGCCCACT 59.814 50.000 0.00 0.00 0.00 4.00
2125 2323 1.075482 AACTCCACATGCCCACTGG 59.925 57.895 0.00 0.00 0.00 4.00
2154 2352 2.668550 GCACCACCGGAACAGGTC 60.669 66.667 9.46 1.66 43.89 3.85
2209 2407 2.365068 CGCCGCCGTATCATCTTCG 61.365 63.158 0.00 0.00 0.00 3.79
2367 2567 5.880887 CAGTGGGAGATAAAGAAACCCTAAC 59.119 44.000 0.00 0.00 40.98 2.34
2403 2603 5.055812 AGCATATTGTGTTGGTTTTGTTGG 58.944 37.500 0.00 0.00 0.00 3.77
2405 2605 5.177327 GCATATTGTGTTGGTTTTGTTGGAG 59.823 40.000 0.00 0.00 0.00 3.86
2416 2616 4.868171 GGTTTTGTTGGAGTTCTTTTCACC 59.132 41.667 0.00 0.00 0.00 4.02
2431 2631 3.773418 TTCACCGGAACCAGTAAATCA 57.227 42.857 9.46 0.00 0.00 2.57
2434 2634 3.517901 TCACCGGAACCAGTAAATCATCT 59.482 43.478 9.46 0.00 0.00 2.90
2435 2635 4.019681 TCACCGGAACCAGTAAATCATCTT 60.020 41.667 9.46 0.00 0.00 2.40
2468 2668 3.855689 AAAAAGATGATGCTGGAACCG 57.144 42.857 0.00 0.00 0.00 4.44
2477 2677 4.265893 TGATGCTGGAACCGCTTATTAAA 58.734 39.130 0.00 0.00 0.00 1.52
2481 2681 3.242316 GCTGGAACCGCTTATTAAAGACG 60.242 47.826 0.00 0.00 34.37 4.18
2482 2682 3.929094 TGGAACCGCTTATTAAAGACGT 58.071 40.909 0.00 0.00 34.37 4.34
2501 2701 3.741344 ACGTTCAACAAGAGTCTACATGC 59.259 43.478 0.00 0.00 0.00 4.06
2530 2730 8.962884 AGTTTTAATTCTGTTTTCAAAGGCAT 57.037 26.923 0.00 0.00 0.00 4.40
2531 2731 9.394767 AGTTTTAATTCTGTTTTCAAAGGCATT 57.605 25.926 0.00 0.00 0.00 3.56
2538 2738 9.807649 ATTCTGTTTTCAAAGGCATTATATCAC 57.192 29.630 0.00 0.00 0.00 3.06
2539 2739 8.579850 TCTGTTTTCAAAGGCATTATATCACT 57.420 30.769 0.00 0.00 0.00 3.41
2540 2740 9.023962 TCTGTTTTCAAAGGCATTATATCACTT 57.976 29.630 0.00 0.00 0.00 3.16
2541 2741 9.643693 CTGTTTTCAAAGGCATTATATCACTTT 57.356 29.630 0.00 0.00 32.06 2.66
2542 2742 9.421806 TGTTTTCAAAGGCATTATATCACTTTG 57.578 29.630 8.66 8.66 45.60 2.77
2545 2745 7.572523 TCAAAGGCATTATATCACTTTGGAG 57.427 36.000 13.45 0.00 44.80 3.86
2546 2746 7.118723 TCAAAGGCATTATATCACTTTGGAGT 58.881 34.615 13.45 0.00 44.80 3.85
2551 2751 5.822519 GCATTATATCACTTTGGAGTGGTCA 59.177 40.000 6.70 0.00 43.79 4.02
2552 2752 6.017605 GCATTATATCACTTTGGAGTGGTCAG 60.018 42.308 6.70 0.00 43.79 3.51
2553 2753 2.867109 ATCACTTTGGAGTGGTCAGG 57.133 50.000 6.70 0.00 43.79 3.86
2554 2754 1.352352 ATCACTTTGGAGTGGTCAGGG 59.648 52.381 6.70 0.00 43.79 4.45
2555 2755 1.456287 ACTTTGGAGTGGTCAGGGC 59.544 57.895 0.00 0.00 33.99 5.19
2556 2756 1.672356 CTTTGGAGTGGTCAGGGCG 60.672 63.158 0.00 0.00 0.00 6.13
2557 2757 3.842925 TTTGGAGTGGTCAGGGCGC 62.843 63.158 0.00 0.00 0.00 6.53
2560 2760 2.281484 GAGTGGTCAGGGCGCAAA 60.281 61.111 10.83 0.00 0.00 3.68
2562 2762 2.281484 GTGGTCAGGGCGCAAAGA 60.281 61.111 10.83 0.00 0.00 2.52
2564 2764 2.032681 GGTCAGGGCGCAAAGACT 59.967 61.111 19.83 4.12 0.00 3.24
2567 2767 1.138266 GGTCAGGGCGCAAAGACTATA 59.862 52.381 19.83 0.00 0.00 1.31
2568 2768 2.224305 GGTCAGGGCGCAAAGACTATAT 60.224 50.000 19.83 0.00 0.00 0.86
2570 2770 4.238514 GTCAGGGCGCAAAGACTATATAG 58.761 47.826 10.83 8.27 0.00 1.31
2571 2771 2.996621 CAGGGCGCAAAGACTATATAGC 59.003 50.000 10.83 3.19 0.00 2.97
2572 2772 2.632996 AGGGCGCAAAGACTATATAGCA 59.367 45.455 10.83 0.00 0.00 3.49
2573 2773 2.737252 GGGCGCAAAGACTATATAGCAC 59.263 50.000 10.83 4.75 0.00 4.40
2575 2775 4.321750 GGGCGCAAAGACTATATAGCACTA 60.322 45.833 10.83 0.00 0.00 2.74
2577 2777 5.289675 GGCGCAAAGACTATATAGCACTATG 59.710 44.000 10.83 4.60 0.00 2.23
2578 2778 5.864474 GCGCAAAGACTATATAGCACTATGT 59.136 40.000 9.78 0.00 0.00 2.29
2580 2780 7.702772 GCGCAAAGACTATATAGCACTATGTAT 59.297 37.037 9.78 0.00 0.00 2.29
2582 2782 9.862371 GCAAAGACTATATAGCACTATGTATGT 57.138 33.333 9.78 0.09 0.00 2.29
2585 2785 9.535170 AAGACTATATAGCACTATGTATGTGGT 57.465 33.333 9.78 0.00 46.10 4.16
2586 2786 8.961634 AGACTATATAGCACTATGTATGTGGTG 58.038 37.037 9.78 0.00 44.41 4.17
2597 2797 9.002600 CACTATGTATGTGGTGCATAATAATGT 57.997 33.333 0.00 0.00 41.29 2.71
2601 2801 8.916628 TGTATGTGGTGCATAATAATGTATGT 57.083 30.769 0.00 0.00 41.29 2.29
2606 2806 8.296000 TGTGGTGCATAATAATGTATGTATTGC 58.704 33.333 0.00 0.00 34.51 3.56
2607 2807 8.514594 GTGGTGCATAATAATGTATGTATTGCT 58.485 33.333 0.00 0.00 34.51 3.91
2608 2808 9.732130 TGGTGCATAATAATGTATGTATTGCTA 57.268 29.630 0.00 0.00 34.51 3.49
2645 2845 7.616528 TTAATATGGATCAGAGATGTGACCA 57.383 36.000 0.00 0.00 34.34 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 3.264897 CTGCATAGACGTGGCGGC 61.265 66.667 0.00 0.00 33.59 6.53
17 18 1.589993 CTCTGCATAGACGTGGCGG 60.590 63.158 0.00 0.00 35.25 6.13
18 19 1.589993 CCTCTGCATAGACGTGGCG 60.590 63.158 0.00 0.00 0.00 5.69
19 20 0.175760 TTCCTCTGCATAGACGTGGC 59.824 55.000 0.00 0.00 0.00 5.01
20 21 1.804372 GCTTCCTCTGCATAGACGTGG 60.804 57.143 0.00 0.00 0.00 4.94
21 22 1.134995 TGCTTCCTCTGCATAGACGTG 60.135 52.381 0.00 0.00 35.31 4.49
22 23 1.134965 GTGCTTCCTCTGCATAGACGT 60.135 52.381 0.00 0.00 42.69 4.34
23 24 1.565305 GTGCTTCCTCTGCATAGACG 58.435 55.000 0.00 0.00 42.69 4.18
24 25 1.565305 CGTGCTTCCTCTGCATAGAC 58.435 55.000 0.00 0.00 42.69 2.59
25 26 0.179100 GCGTGCTTCCTCTGCATAGA 60.179 55.000 0.00 0.00 42.69 1.98
26 27 1.156645 GGCGTGCTTCCTCTGCATAG 61.157 60.000 0.00 0.00 42.69 2.23
27 28 1.153369 GGCGTGCTTCCTCTGCATA 60.153 57.895 0.00 0.00 42.69 3.14
28 29 2.437359 GGCGTGCTTCCTCTGCAT 60.437 61.111 0.00 0.00 42.69 3.96
29 30 3.889134 CTGGCGTGCTTCCTCTGCA 62.889 63.158 0.00 0.00 38.19 4.41
30 31 3.123620 CTGGCGTGCTTCCTCTGC 61.124 66.667 0.00 0.00 0.00 4.26
31 32 1.739562 GTCTGGCGTGCTTCCTCTG 60.740 63.158 0.00 0.00 0.00 3.35
32 33 2.659610 GTCTGGCGTGCTTCCTCT 59.340 61.111 0.00 0.00 0.00 3.69
33 34 2.435059 GGTCTGGCGTGCTTCCTC 60.435 66.667 0.00 0.00 0.00 3.71
34 35 4.379243 CGGTCTGGCGTGCTTCCT 62.379 66.667 0.00 0.00 0.00 3.36
79 80 1.153489 CTCATGTCTGGGCGTGGAG 60.153 63.158 0.00 0.00 0.00 3.86
80 81 2.659063 CCTCATGTCTGGGCGTGGA 61.659 63.158 0.00 0.00 0.00 4.02
81 82 2.124983 CCTCATGTCTGGGCGTGG 60.125 66.667 0.00 0.00 0.00 4.94
82 83 1.153489 CTCCTCATGTCTGGGCGTG 60.153 63.158 0.00 0.00 0.00 5.34
83 84 0.689080 ATCTCCTCATGTCTGGGCGT 60.689 55.000 0.00 0.00 0.00 5.68
84 85 0.033228 GATCTCCTCATGTCTGGGCG 59.967 60.000 0.00 0.00 0.00 6.13
85 86 0.033228 CGATCTCCTCATGTCTGGGC 59.967 60.000 0.00 0.00 0.00 5.36
86 87 0.678395 CCGATCTCCTCATGTCTGGG 59.322 60.000 0.00 0.00 0.00 4.45
87 88 1.339610 GACCGATCTCCTCATGTCTGG 59.660 57.143 0.00 0.00 0.00 3.86
88 89 1.001924 CGACCGATCTCCTCATGTCTG 60.002 57.143 0.00 0.00 0.00 3.51
89 90 1.313772 CGACCGATCTCCTCATGTCT 58.686 55.000 0.00 0.00 0.00 3.41
90 91 1.025812 ACGACCGATCTCCTCATGTC 58.974 55.000 0.00 0.00 0.00 3.06
91 92 0.741326 CACGACCGATCTCCTCATGT 59.259 55.000 0.00 0.00 0.00 3.21
92 93 0.596083 GCACGACCGATCTCCTCATG 60.596 60.000 0.00 0.00 0.00 3.07
93 94 1.736586 GCACGACCGATCTCCTCAT 59.263 57.895 0.00 0.00 0.00 2.90
94 95 2.415608 GGCACGACCGATCTCCTCA 61.416 63.158 0.00 0.00 0.00 3.86
95 96 2.413765 GGCACGACCGATCTCCTC 59.586 66.667 0.00 0.00 0.00 3.71
113 114 4.329545 TCCCTTGCGAGGTGGTGC 62.330 66.667 19.14 0.00 41.85 5.01
114 115 2.046892 CTCCCTTGCGAGGTGGTG 60.047 66.667 19.14 3.42 41.85 4.17
115 116 1.831652 CTTCTCCCTTGCGAGGTGGT 61.832 60.000 19.14 0.00 41.85 4.16
116 117 1.078848 CTTCTCCCTTGCGAGGTGG 60.079 63.158 19.14 10.72 41.85 4.61
117 118 1.743252 GCTTCTCCCTTGCGAGGTG 60.743 63.158 19.14 11.12 41.85 4.00
118 119 0.614979 TAGCTTCTCCCTTGCGAGGT 60.615 55.000 19.14 0.63 41.85 3.85
119 120 0.537188 TTAGCTTCTCCCTTGCGAGG 59.463 55.000 13.75 13.75 43.15 4.63
120 121 1.933247 CTTAGCTTCTCCCTTGCGAG 58.067 55.000 0.00 0.00 0.00 5.03
121 122 0.108138 GCTTAGCTTCTCCCTTGCGA 60.108 55.000 0.00 0.00 0.00 5.10
122 123 1.092345 GGCTTAGCTTCTCCCTTGCG 61.092 60.000 3.59 0.00 0.00 4.85
123 124 0.749818 GGGCTTAGCTTCTCCCTTGC 60.750 60.000 3.59 0.00 35.87 4.01
124 125 0.106967 GGGGCTTAGCTTCTCCCTTG 60.107 60.000 3.59 0.00 38.78 3.61
125 126 1.627297 CGGGGCTTAGCTTCTCCCTT 61.627 60.000 13.04 0.00 38.78 3.95
126 127 2.066999 CGGGGCTTAGCTTCTCCCT 61.067 63.158 13.04 0.00 38.78 4.20
127 128 2.506472 CGGGGCTTAGCTTCTCCC 59.494 66.667 3.59 5.14 38.03 4.30
128 129 2.203084 GCGGGGCTTAGCTTCTCC 60.203 66.667 3.59 0.00 0.00 3.71
129 130 2.203084 GGCGGGGCTTAGCTTCTC 60.203 66.667 3.59 0.00 0.00 2.87
130 131 4.162690 CGGCGGGGCTTAGCTTCT 62.163 66.667 3.59 0.00 0.00 2.85
193 194 4.779733 TCCTCCTCCACCCTCGCC 62.780 72.222 0.00 0.00 0.00 5.54
194 195 2.683933 TTCCTCCTCCACCCTCGC 60.684 66.667 0.00 0.00 0.00 5.03
195 196 2.060980 CCTTCCTCCTCCACCCTCG 61.061 68.421 0.00 0.00 0.00 4.63
196 197 1.690985 CCCTTCCTCCTCCACCCTC 60.691 68.421 0.00 0.00 0.00 4.30
197 198 2.456840 CCCTTCCTCCTCCACCCT 59.543 66.667 0.00 0.00 0.00 4.34
198 199 2.692741 CCCCTTCCTCCTCCACCC 60.693 72.222 0.00 0.00 0.00 4.61
199 200 2.692741 CCCCCTTCCTCCTCCACC 60.693 72.222 0.00 0.00 0.00 4.61
200 201 1.690985 CTCCCCCTTCCTCCTCCAC 60.691 68.421 0.00 0.00 0.00 4.02
201 202 2.787866 CTCCCCCTTCCTCCTCCA 59.212 66.667 0.00 0.00 0.00 3.86
202 203 2.040359 CCTCCCCCTTCCTCCTCC 60.040 72.222 0.00 0.00 0.00 4.30
203 204 2.040359 CCCTCCCCCTTCCTCCTC 60.040 72.222 0.00 0.00 0.00 3.71
204 205 2.543637 TCCCTCCCCCTTCCTCCT 60.544 66.667 0.00 0.00 0.00 3.69
205 206 2.040359 CTCCCTCCCCCTTCCTCC 60.040 72.222 0.00 0.00 0.00 4.30
206 207 2.040359 CCTCCCTCCCCCTTCCTC 60.040 72.222 0.00 0.00 0.00 3.71
207 208 4.439901 GCCTCCCTCCCCCTTCCT 62.440 72.222 0.00 0.00 0.00 3.36
208 209 4.439901 AGCCTCCCTCCCCCTTCC 62.440 72.222 0.00 0.00 0.00 3.46
209 210 3.093172 CAGCCTCCCTCCCCCTTC 61.093 72.222 0.00 0.00 0.00 3.46
210 211 4.767892 CCAGCCTCCCTCCCCCTT 62.768 72.222 0.00 0.00 0.00 3.95
220 221 3.483869 AATCTCCGCCCCAGCCTC 61.484 66.667 0.00 0.00 34.57 4.70
221 222 3.801997 CAATCTCCGCCCCAGCCT 61.802 66.667 0.00 0.00 34.57 4.58
222 223 4.883354 CCAATCTCCGCCCCAGCC 62.883 72.222 0.00 0.00 34.57 4.85
223 224 3.764160 CTCCAATCTCCGCCCCAGC 62.764 68.421 0.00 0.00 0.00 4.85
224 225 2.507944 CTCCAATCTCCGCCCCAG 59.492 66.667 0.00 0.00 0.00 4.45
225 226 3.089874 CCTCCAATCTCCGCCCCA 61.090 66.667 0.00 0.00 0.00 4.96
226 227 4.570874 GCCTCCAATCTCCGCCCC 62.571 72.222 0.00 0.00 0.00 5.80
227 228 4.570874 GGCCTCCAATCTCCGCCC 62.571 72.222 0.00 0.00 33.30 6.13
228 229 4.570874 GGGCCTCCAATCTCCGCC 62.571 72.222 0.84 0.00 38.96 6.13
229 230 3.468326 GAGGGCCTCCAATCTCCGC 62.468 68.421 23.49 0.00 34.83 5.54
230 231 2.825264 GAGGGCCTCCAATCTCCG 59.175 66.667 23.49 0.00 34.83 4.63
270 271 3.848252 GACCCTATCCCCTCCCCCG 62.848 73.684 0.00 0.00 0.00 5.73
271 272 2.207478 GACCCTATCCCCTCCCCC 59.793 72.222 0.00 0.00 0.00 5.40
272 273 2.203803 CGACCCTATCCCCTCCCC 60.204 72.222 0.00 0.00 0.00 4.81
273 274 2.203803 CCGACCCTATCCCCTCCC 60.204 72.222 0.00 0.00 0.00 4.30
274 275 2.203803 CCCGACCCTATCCCCTCC 60.204 72.222 0.00 0.00 0.00 4.30
275 276 2.203803 CCCCGACCCTATCCCCTC 60.204 72.222 0.00 0.00 0.00 4.30
276 277 3.858634 CCCCCGACCCTATCCCCT 61.859 72.222 0.00 0.00 0.00 4.79
277 278 3.415482 TTCCCCCGACCCTATCCCC 62.415 68.421 0.00 0.00 0.00 4.81
278 279 1.842010 CTTCCCCCGACCCTATCCC 60.842 68.421 0.00 0.00 0.00 3.85
279 280 1.842010 CCTTCCCCCGACCCTATCC 60.842 68.421 0.00 0.00 0.00 2.59
280 281 1.842010 CCCTTCCCCCGACCCTATC 60.842 68.421 0.00 0.00 0.00 2.08
281 282 1.686060 ATCCCTTCCCCCGACCCTAT 61.686 60.000 0.00 0.00 0.00 2.57
282 283 2.322252 GATCCCTTCCCCCGACCCTA 62.322 65.000 0.00 0.00 0.00 3.53
283 284 3.707189 ATCCCTTCCCCCGACCCT 61.707 66.667 0.00 0.00 0.00 4.34
284 285 3.169242 GATCCCTTCCCCCGACCC 61.169 72.222 0.00 0.00 0.00 4.46
285 286 2.040779 AGATCCCTTCCCCCGACC 60.041 66.667 0.00 0.00 0.00 4.79
286 287 1.075151 AGAGATCCCTTCCCCCGAC 60.075 63.158 0.00 0.00 0.00 4.79
287 288 1.233369 GAGAGATCCCTTCCCCCGA 59.767 63.158 0.00 0.00 0.00 5.14
288 289 0.472734 ATGAGAGATCCCTTCCCCCG 60.473 60.000 0.00 0.00 0.00 5.73
289 290 1.063183 CATGAGAGATCCCTTCCCCC 58.937 60.000 0.00 0.00 0.00 5.40
290 291 1.063183 CCATGAGAGATCCCTTCCCC 58.937 60.000 0.00 0.00 0.00 4.81
291 292 1.419387 CACCATGAGAGATCCCTTCCC 59.581 57.143 0.00 0.00 0.00 3.97
292 293 1.202746 GCACCATGAGAGATCCCTTCC 60.203 57.143 0.00 0.00 0.00 3.46
293 294 1.539929 CGCACCATGAGAGATCCCTTC 60.540 57.143 0.00 0.00 0.00 3.46
294 295 0.467384 CGCACCATGAGAGATCCCTT 59.533 55.000 0.00 0.00 0.00 3.95
295 296 0.689080 ACGCACCATGAGAGATCCCT 60.689 55.000 0.00 0.00 0.00 4.20
296 297 0.249657 GACGCACCATGAGAGATCCC 60.250 60.000 0.00 0.00 0.00 3.85
297 298 0.749649 AGACGCACCATGAGAGATCC 59.250 55.000 0.00 0.00 0.00 3.36
298 299 1.406898 TGAGACGCACCATGAGAGATC 59.593 52.381 0.00 0.00 0.00 2.75
299 300 1.478631 TGAGACGCACCATGAGAGAT 58.521 50.000 0.00 0.00 0.00 2.75
300 301 1.203287 CTTGAGACGCACCATGAGAGA 59.797 52.381 0.00 0.00 0.00 3.10
301 302 1.638133 CTTGAGACGCACCATGAGAG 58.362 55.000 0.00 0.00 0.00 3.20
302 303 0.247460 CCTTGAGACGCACCATGAGA 59.753 55.000 0.00 0.00 0.00 3.27
303 304 0.247460 TCCTTGAGACGCACCATGAG 59.753 55.000 0.00 0.00 0.00 2.90
304 305 0.684535 TTCCTTGAGACGCACCATGA 59.315 50.000 0.00 0.00 0.00 3.07
305 306 1.466167 CTTTCCTTGAGACGCACCATG 59.534 52.381 0.00 0.00 0.00 3.66
306 307 1.813513 CTTTCCTTGAGACGCACCAT 58.186 50.000 0.00 0.00 0.00 3.55
307 308 0.884704 GCTTTCCTTGAGACGCACCA 60.885 55.000 0.00 0.00 0.00 4.17
308 309 1.869690 GCTTTCCTTGAGACGCACC 59.130 57.895 0.00 0.00 0.00 5.01
309 310 1.493311 CGCTTTCCTTGAGACGCAC 59.507 57.895 0.00 0.00 0.00 5.34
310 311 1.667830 CCGCTTTCCTTGAGACGCA 60.668 57.895 0.00 0.00 0.00 5.24
311 312 0.741221 ATCCGCTTTCCTTGAGACGC 60.741 55.000 0.00 0.00 0.00 5.19
312 313 1.726853 AATCCGCTTTCCTTGAGACG 58.273 50.000 0.00 0.00 0.00 4.18
313 314 4.023193 TGAAAAATCCGCTTTCCTTGAGAC 60.023 41.667 0.00 0.00 32.79 3.36
314 315 4.141287 TGAAAAATCCGCTTTCCTTGAGA 58.859 39.130 0.00 0.00 32.79 3.27
315 316 4.503741 TGAAAAATCCGCTTTCCTTGAG 57.496 40.909 0.00 0.00 32.79 3.02
316 317 6.376864 TCATATGAAAAATCCGCTTTCCTTGA 59.623 34.615 1.98 0.00 32.79 3.02
317 318 6.563422 TCATATGAAAAATCCGCTTTCCTTG 58.437 36.000 1.98 0.00 32.79 3.61
318 319 6.603201 TCTCATATGAAAAATCCGCTTTCCTT 59.397 34.615 6.90 0.00 32.79 3.36
319 320 6.122277 TCTCATATGAAAAATCCGCTTTCCT 58.878 36.000 6.90 0.00 32.79 3.36
320 321 6.377327 TCTCATATGAAAAATCCGCTTTCC 57.623 37.500 6.90 0.00 32.79 3.13
324 325 9.288576 TGAAATATCTCATATGAAAAATCCGCT 57.711 29.630 6.90 0.00 0.00 5.52
325 326 9.897744 TTGAAATATCTCATATGAAAAATCCGC 57.102 29.630 6.90 0.00 0.00 5.54
333 334 9.412460 AGTTTGCCTTGAAATATCTCATATGAA 57.588 29.630 6.90 0.00 0.00 2.57
334 335 8.985315 AGTTTGCCTTGAAATATCTCATATGA 57.015 30.769 5.07 5.07 0.00 2.15
336 337 9.851686 TGTAGTTTGCCTTGAAATATCTCATAT 57.148 29.630 0.00 0.00 0.00 1.78
337 338 9.851686 ATGTAGTTTGCCTTGAAATATCTCATA 57.148 29.630 0.00 0.00 0.00 2.15
338 339 8.627403 CATGTAGTTTGCCTTGAAATATCTCAT 58.373 33.333 0.00 0.00 0.00 2.90
339 340 7.828717 TCATGTAGTTTGCCTTGAAATATCTCA 59.171 33.333 0.00 0.00 0.00 3.27
340 341 8.213518 TCATGTAGTTTGCCTTGAAATATCTC 57.786 34.615 0.00 0.00 0.00 2.75
341 342 8.579850 TTCATGTAGTTTGCCTTGAAATATCT 57.420 30.769 0.00 0.00 0.00 1.98
342 343 9.638239 TTTTCATGTAGTTTGCCTTGAAATATC 57.362 29.630 0.00 0.00 35.77 1.63
343 344 9.995003 TTTTTCATGTAGTTTGCCTTGAAATAT 57.005 25.926 0.00 0.00 35.77 1.28
344 345 9.995003 ATTTTTCATGTAGTTTGCCTTGAAATA 57.005 25.926 0.00 0.00 35.77 1.40
345 346 8.907222 ATTTTTCATGTAGTTTGCCTTGAAAT 57.093 26.923 0.00 0.00 35.77 2.17
346 347 9.995003 ATATTTTTCATGTAGTTTGCCTTGAAA 57.005 25.926 0.00 0.00 34.72 2.69
347 348 9.995003 AATATTTTTCATGTAGTTTGCCTTGAA 57.005 25.926 0.00 0.00 0.00 2.69
348 349 9.638239 GAATATTTTTCATGTAGTTTGCCTTGA 57.362 29.630 0.00 0.00 0.00 3.02
349 350 8.586273 CGAATATTTTTCATGTAGTTTGCCTTG 58.414 33.333 0.00 0.00 0.00 3.61
350 351 8.303876 ACGAATATTTTTCATGTAGTTTGCCTT 58.696 29.630 0.00 0.00 0.00 4.35
351 352 7.754924 CACGAATATTTTTCATGTAGTTTGCCT 59.245 33.333 0.00 0.00 0.00 4.75
352 353 7.462724 GCACGAATATTTTTCATGTAGTTTGCC 60.463 37.037 0.00 0.00 0.00 4.52
353 354 7.383361 GCACGAATATTTTTCATGTAGTTTGC 58.617 34.615 0.00 0.00 0.00 3.68
354 355 7.480229 TCGCACGAATATTTTTCATGTAGTTTG 59.520 33.333 0.00 0.00 0.00 2.93
355 356 7.523219 TCGCACGAATATTTTTCATGTAGTTT 58.477 30.769 0.00 0.00 0.00 2.66
356 357 7.067532 TCGCACGAATATTTTTCATGTAGTT 57.932 32.000 0.00 0.00 0.00 2.24
357 358 6.312918 ACTCGCACGAATATTTTTCATGTAGT 59.687 34.615 0.00 0.00 0.00 2.73
358 359 6.705782 ACTCGCACGAATATTTTTCATGTAG 58.294 36.000 0.00 0.00 0.00 2.74
359 360 6.237996 GGACTCGCACGAATATTTTTCATGTA 60.238 38.462 0.00 0.00 0.00 2.29
360 361 5.447279 GGACTCGCACGAATATTTTTCATGT 60.447 40.000 0.00 0.00 0.00 3.21
361 362 4.963953 GGACTCGCACGAATATTTTTCATG 59.036 41.667 0.00 0.00 0.00 3.07
362 363 4.634004 TGGACTCGCACGAATATTTTTCAT 59.366 37.500 0.00 0.00 0.00 2.57
363 364 3.997681 TGGACTCGCACGAATATTTTTCA 59.002 39.130 0.00 0.00 0.00 2.69
364 365 4.593597 TGGACTCGCACGAATATTTTTC 57.406 40.909 0.00 0.00 0.00 2.29
365 366 5.815740 ACTATGGACTCGCACGAATATTTTT 59.184 36.000 0.00 0.00 0.00 1.94
366 367 5.357257 ACTATGGACTCGCACGAATATTTT 58.643 37.500 0.00 0.00 0.00 1.82
367 368 4.945246 ACTATGGACTCGCACGAATATTT 58.055 39.130 0.00 0.00 0.00 1.40
368 369 4.585955 ACTATGGACTCGCACGAATATT 57.414 40.909 0.00 0.00 0.00 1.28
369 370 4.585955 AACTATGGACTCGCACGAATAT 57.414 40.909 0.00 0.00 0.00 1.28
370 371 4.380841 AAACTATGGACTCGCACGAATA 57.619 40.909 0.00 0.00 0.00 1.75
371 372 2.961526 AACTATGGACTCGCACGAAT 57.038 45.000 0.00 0.00 0.00 3.34
372 373 2.736144 AAACTATGGACTCGCACGAA 57.264 45.000 0.00 0.00 0.00 3.85
373 374 2.734606 CAAAAACTATGGACTCGCACGA 59.265 45.455 0.00 0.00 0.00 4.35
374 375 2.478894 ACAAAAACTATGGACTCGCACG 59.521 45.455 0.00 0.00 0.00 5.34
375 376 5.796350 ATACAAAAACTATGGACTCGCAC 57.204 39.130 0.00 0.00 0.00 5.34
376 377 8.500753 AAATATACAAAAACTATGGACTCGCA 57.499 30.769 0.00 0.00 0.00 5.10
377 378 9.221775 CAAAATATACAAAAACTATGGACTCGC 57.778 33.333 0.00 0.00 0.00 5.03
440 441 9.981114 ACTTTTTAGCTATTATGCACTGTTTTT 57.019 25.926 0.00 0.00 34.99 1.94
444 445 9.613428 TCATACTTTTTAGCTATTATGCACTGT 57.387 29.630 0.00 0.00 34.99 3.55
497 498 9.566530 CGAGAGTATATACGTGTAGTATGTAGT 57.433 37.037 7.23 2.44 45.10 2.73
498 499 9.780413 TCGAGAGTATATACGTGTAGTATGTAG 57.220 37.037 7.23 0.00 45.10 2.74
500 501 9.650539 AATCGAGAGTATATACGTGTAGTATGT 57.349 33.333 7.23 0.00 45.10 2.29
504 505 9.049523 TGAAAATCGAGAGTATATACGTGTAGT 57.950 33.333 7.23 0.00 0.00 2.73
513 514 9.000486 TCGTGTCTATGAAAATCGAGAGTATAT 58.000 33.333 0.00 0.00 0.00 0.86
514 515 8.374327 TCGTGTCTATGAAAATCGAGAGTATA 57.626 34.615 0.00 0.00 0.00 1.47
515 516 7.260558 TCGTGTCTATGAAAATCGAGAGTAT 57.739 36.000 0.00 0.00 0.00 2.12
516 517 6.673154 TCGTGTCTATGAAAATCGAGAGTA 57.327 37.500 0.00 0.00 0.00 2.59
517 518 5.562506 TCGTGTCTATGAAAATCGAGAGT 57.437 39.130 0.00 0.00 0.00 3.24
518 519 6.871044 TTTCGTGTCTATGAAAATCGAGAG 57.129 37.500 0.00 0.00 38.51 3.20
519 520 7.971722 TGTATTTCGTGTCTATGAAAATCGAGA 59.028 33.333 0.00 0.00 43.08 4.04
520 521 8.115491 TGTATTTCGTGTCTATGAAAATCGAG 57.885 34.615 0.00 0.00 43.08 4.04
521 522 8.377681 GTTGTATTTCGTGTCTATGAAAATCGA 58.622 33.333 0.00 0.00 43.08 3.59
522 523 8.166066 TGTTGTATTTCGTGTCTATGAAAATCG 58.834 33.333 0.00 0.00 43.08 3.34
523 524 9.988350 ATGTTGTATTTCGTGTCTATGAAAATC 57.012 29.630 0.00 0.00 43.08 2.17
542 543 9.758651 ACGCTCATATGAGTTTTATATGTTGTA 57.241 29.630 28.92 0.00 43.85 2.41
543 544 8.662781 ACGCTCATATGAGTTTTATATGTTGT 57.337 30.769 28.92 10.94 43.85 3.32
546 547 9.982651 AGTTACGCTCATATGAGTTTTATATGT 57.017 29.630 28.92 17.50 43.85 2.29
550 551 9.640963 GGATAGTTACGCTCATATGAGTTTTAT 57.359 33.333 28.92 18.52 43.85 1.40
551 552 8.086522 GGGATAGTTACGCTCATATGAGTTTTA 58.913 37.037 28.92 16.82 43.85 1.52
552 553 6.929606 GGGATAGTTACGCTCATATGAGTTTT 59.070 38.462 28.92 17.68 43.85 2.43
553 554 6.267928 AGGGATAGTTACGCTCATATGAGTTT 59.732 38.462 28.92 19.78 43.85 2.66
554 555 5.775701 AGGGATAGTTACGCTCATATGAGTT 59.224 40.000 28.92 20.08 43.85 3.01
555 556 5.184096 CAGGGATAGTTACGCTCATATGAGT 59.816 44.000 28.92 16.58 43.85 3.41
556 557 5.393569 CCAGGGATAGTTACGCTCATATGAG 60.394 48.000 25.64 25.64 44.75 2.90
557 558 4.462834 CCAGGGATAGTTACGCTCATATGA 59.537 45.833 5.07 5.07 0.00 2.15
558 559 4.220821 ACCAGGGATAGTTACGCTCATATG 59.779 45.833 0.00 0.00 0.00 1.78
559 560 4.417437 ACCAGGGATAGTTACGCTCATAT 58.583 43.478 0.00 0.00 0.00 1.78
560 561 3.840991 ACCAGGGATAGTTACGCTCATA 58.159 45.455 0.00 0.00 0.00 2.15
561 562 2.679082 ACCAGGGATAGTTACGCTCAT 58.321 47.619 0.00 0.00 0.00 2.90
562 563 2.154567 ACCAGGGATAGTTACGCTCA 57.845 50.000 0.00 0.00 0.00 4.26
563 564 2.557490 CCTACCAGGGATAGTTACGCTC 59.443 54.545 0.00 0.00 0.00 5.03
564 565 2.176364 TCCTACCAGGGATAGTTACGCT 59.824 50.000 0.00 0.00 35.59 5.07
565 566 2.590821 TCCTACCAGGGATAGTTACGC 58.409 52.381 0.00 0.00 35.59 4.42
566 567 4.403432 TGTTTCCTACCAGGGATAGTTACG 59.597 45.833 0.00 0.00 35.59 3.18
567 568 5.945144 TGTTTCCTACCAGGGATAGTTAC 57.055 43.478 0.00 0.00 35.59 2.50
568 569 7.037153 ACAAATGTTTCCTACCAGGGATAGTTA 60.037 37.037 0.00 0.00 35.59 2.24
569 570 6.187682 CAAATGTTTCCTACCAGGGATAGTT 58.812 40.000 0.00 0.00 35.59 2.24
570 571 5.253096 ACAAATGTTTCCTACCAGGGATAGT 59.747 40.000 0.00 0.00 35.59 2.12
571 572 5.755849 ACAAATGTTTCCTACCAGGGATAG 58.244 41.667 0.00 0.00 35.59 2.08
572 573 5.251932 TGACAAATGTTTCCTACCAGGGATA 59.748 40.000 0.00 0.00 35.59 2.59
573 574 4.044065 TGACAAATGTTTCCTACCAGGGAT 59.956 41.667 0.00 0.00 35.59 3.85
574 575 3.396276 TGACAAATGTTTCCTACCAGGGA 59.604 43.478 0.00 0.00 35.59 4.20
575 576 3.761897 TGACAAATGTTTCCTACCAGGG 58.238 45.455 0.00 0.00 35.59 4.45
576 577 8.924511 ATATATGACAAATGTTTCCTACCAGG 57.075 34.615 0.00 0.00 36.46 4.45
702 703 9.066892 GCATGGACTTAGAATACATTAATTGGA 57.933 33.333 0.00 0.00 0.00 3.53
703 704 8.849168 TGCATGGACTTAGAATACATTAATTGG 58.151 33.333 0.00 0.00 0.00 3.16
770 799 5.677319 ATACCCACCTCCGAATATATGTG 57.323 43.478 0.00 0.00 0.00 3.21
780 810 1.900486 GGGATAGAATACCCACCTCCG 59.100 57.143 0.00 0.00 44.96 4.63
841 872 5.971202 GTGAGAGATAGAGAGAAAAGAAGCG 59.029 44.000 0.00 0.00 0.00 4.68
904 937 6.481313 ACACTACAATATGCTTGCTCTATGTG 59.519 38.462 0.00 0.00 0.00 3.21
906 939 7.116948 GGTACACTACAATATGCTTGCTCTATG 59.883 40.741 0.00 0.00 0.00 2.23
1044 1085 1.835494 AGCACATCAGAAGCAGCAAT 58.165 45.000 0.00 0.00 0.00 3.56
1209 1253 3.451178 AGACAAATATGCACGACTAGGGT 59.549 43.478 0.00 0.00 0.00 4.34
1345 1520 4.292599 GTTGGTTACCAAAACGAATGACC 58.707 43.478 19.24 0.00 45.73 4.02
1354 1529 3.564053 AGACTCCGTTGGTTACCAAAA 57.436 42.857 19.24 6.67 45.73 2.44
1413 1590 1.233019 GTCATCCATGATTCGGCCTG 58.767 55.000 0.00 0.00 39.30 4.85
1484 1661 1.405463 TGCACCTGAGCAGTCTATACG 59.595 52.381 0.00 0.00 40.11 3.06
1540 1717 5.781210 TGCATTGTTCCACTGAAACATAA 57.219 34.783 0.00 0.00 30.79 1.90
1578 1755 7.148407 CCGATGCACCCAAAGAAGAATATATAC 60.148 40.741 0.00 0.00 0.00 1.47
1612 1792 2.360191 GGCAAAGGAGGATGGGCA 59.640 61.111 0.00 0.00 0.00 5.36
1631 1811 9.182214 CCATAAAATTGATCAGGATGTATAGGG 57.818 37.037 0.00 0.00 37.40 3.53
1663 1846 2.033801 GGCGCATTAGCATGATCACTTT 59.966 45.455 10.83 0.00 42.27 2.66
1693 1879 6.589907 ACATTGTCCTTTATTTCGAAATTGCC 59.410 34.615 27.10 10.99 0.00 4.52
1768 1959 7.818930 TGCCATTATTGAAGATGGAAGTTTTTC 59.181 33.333 12.81 0.00 44.49 2.29
1769 1960 7.678837 TGCCATTATTGAAGATGGAAGTTTTT 58.321 30.769 12.81 0.00 44.49 1.94
1770 1961 7.243604 TGCCATTATTGAAGATGGAAGTTTT 57.756 32.000 12.81 0.00 44.49 2.43
1771 1962 6.855763 TGCCATTATTGAAGATGGAAGTTT 57.144 33.333 12.81 0.00 44.49 2.66
1772 1963 6.461110 CTGCCATTATTGAAGATGGAAGTT 57.539 37.500 12.81 0.00 44.49 2.66
1775 1966 6.422333 TGTACTGCCATTATTGAAGATGGAA 58.578 36.000 12.81 3.37 44.49 3.53
1788 1979 5.670485 TCTGATATTCGTTGTACTGCCATT 58.330 37.500 0.00 0.00 0.00 3.16
1921 2116 3.695060 CCCGACTCTCTACTACAACATGT 59.305 47.826 0.00 0.00 0.00 3.21
1923 2118 3.053842 TCCCCGACTCTCTACTACAACAT 60.054 47.826 0.00 0.00 0.00 2.71
1936 2131 2.745492 ACGACGACTCCCCGACTC 60.745 66.667 0.00 0.00 0.00 3.36
1944 2139 0.179169 GGGACTTAGCACGACGACTC 60.179 60.000 0.00 0.00 0.00 3.36
1960 2155 1.558167 TTGCGCTGGTTCTATGGGGA 61.558 55.000 9.73 0.00 0.00 4.81
1995 2190 3.279434 TCTACGCTACTCTTCATCAGCA 58.721 45.455 0.00 0.00 33.55 4.41
2023 2221 6.152661 TGTTCTTGTGTCTTCAAGTTGGATTT 59.847 34.615 2.34 0.00 43.44 2.17
2032 2230 8.735315 TGTTTATCTTTGTTCTTGTGTCTTCAA 58.265 29.630 0.00 0.00 0.00 2.69
2054 2252 7.222611 GGATTTGCTCGCATATGTTTATTGTTT 59.777 33.333 4.29 0.00 0.00 2.83
2058 2256 6.208644 GTGGATTTGCTCGCATATGTTTATT 58.791 36.000 4.29 0.00 0.00 1.40
2066 2264 2.121291 TTGGTGGATTTGCTCGCATA 57.879 45.000 0.00 0.00 0.00 3.14
2069 2267 0.881118 TCTTTGGTGGATTTGCTCGC 59.119 50.000 0.00 0.00 0.00 5.03
2104 2302 0.185901 AGTGGGCATGTGGAGTTGTT 59.814 50.000 0.00 0.00 0.00 2.83
2108 2306 2.759114 CCAGTGGGCATGTGGAGT 59.241 61.111 0.00 0.00 32.60 3.85
2153 2351 4.920781 ATAAAGTTCTCCCCTCCTAGGA 57.079 45.455 11.98 11.98 37.67 2.94
2154 2352 4.348461 GGAATAAAGTTCTCCCCTCCTAGG 59.652 50.000 0.82 0.82 34.30 3.02
2200 2398 1.827344 TGTCCTGCTCACGAAGATGAT 59.173 47.619 0.00 0.00 0.00 2.45
2209 2407 0.179018 AGGGTTTGTGTCCTGCTCAC 60.179 55.000 0.00 0.00 36.48 3.51
2244 2442 4.755629 GGGAGGGCTTCGTTTTTAGATATC 59.244 45.833 0.00 0.00 0.00 1.63
2246 2444 3.520317 TGGGAGGGCTTCGTTTTTAGATA 59.480 43.478 0.00 0.00 0.00 1.98
2302 2502 3.221222 CTCCGGTGGCCTTAGGAG 58.779 66.667 20.77 20.77 43.43 3.69
2379 2579 5.526846 CCAACAAAACCAACACAATATGCTT 59.473 36.000 0.00 0.00 0.00 3.91
2380 2580 5.055812 CCAACAAAACCAACACAATATGCT 58.944 37.500 0.00 0.00 0.00 3.79
2381 2581 5.053145 TCCAACAAAACCAACACAATATGC 58.947 37.500 0.00 0.00 0.00 3.14
2382 2582 6.279882 ACTCCAACAAAACCAACACAATATG 58.720 36.000 0.00 0.00 0.00 1.78
2383 2583 6.478512 ACTCCAACAAAACCAACACAATAT 57.521 33.333 0.00 0.00 0.00 1.28
2384 2584 5.923733 ACTCCAACAAAACCAACACAATA 57.076 34.783 0.00 0.00 0.00 1.90
2385 2585 4.817318 ACTCCAACAAAACCAACACAAT 57.183 36.364 0.00 0.00 0.00 2.71
2386 2586 4.282195 AGAACTCCAACAAAACCAACACAA 59.718 37.500 0.00 0.00 0.00 3.33
2387 2587 3.829601 AGAACTCCAACAAAACCAACACA 59.170 39.130 0.00 0.00 0.00 3.72
2388 2588 4.450082 AGAACTCCAACAAAACCAACAC 57.550 40.909 0.00 0.00 0.00 3.32
2389 2589 5.476091 AAAGAACTCCAACAAAACCAACA 57.524 34.783 0.00 0.00 0.00 3.33
2390 2590 5.929415 TGAAAAGAACTCCAACAAAACCAAC 59.071 36.000 0.00 0.00 0.00 3.77
2391 2591 5.929415 GTGAAAAGAACTCCAACAAAACCAA 59.071 36.000 0.00 0.00 0.00 3.67
2403 2603 2.548480 CTGGTTCCGGTGAAAAGAACTC 59.452 50.000 0.00 0.00 39.82 3.01
2405 2605 2.294979 ACTGGTTCCGGTGAAAAGAAC 58.705 47.619 0.00 0.00 39.31 3.01
2416 2616 4.430007 TCGAAGATGATTTACTGGTTCCG 58.570 43.478 0.00 0.00 0.00 4.30
2462 2662 4.389687 TGAACGTCTTTAATAAGCGGTTCC 59.610 41.667 1.59 0.00 39.68 3.62
2468 2668 7.573627 ACTCTTGTTGAACGTCTTTAATAAGC 58.426 34.615 0.00 0.00 0.00 3.09
2477 2677 4.913335 TGTAGACTCTTGTTGAACGTCT 57.087 40.909 8.30 8.30 35.34 4.18
2481 2681 5.673337 TTGCATGTAGACTCTTGTTGAAC 57.327 39.130 0.00 0.00 0.00 3.18
2482 2682 7.161404 ACTATTGCATGTAGACTCTTGTTGAA 58.839 34.615 12.17 0.00 0.00 2.69
2514 2714 8.579850 AGTGATATAATGCCTTTGAAAACAGA 57.420 30.769 0.00 0.00 0.00 3.41
2515 2715 9.643693 AAAGTGATATAATGCCTTTGAAAACAG 57.356 29.630 0.00 0.00 0.00 3.16
2516 2716 9.421806 CAAAGTGATATAATGCCTTTGAAAACA 57.578 29.630 0.00 0.00 42.77 2.83
2517 2717 8.872845 CCAAAGTGATATAATGCCTTTGAAAAC 58.127 33.333 10.97 0.00 42.77 2.43
2518 2718 8.811017 TCCAAAGTGATATAATGCCTTTGAAAA 58.189 29.630 10.97 0.00 42.77 2.29
2519 2719 8.359875 TCCAAAGTGATATAATGCCTTTGAAA 57.640 30.769 10.97 0.00 42.77 2.69
2520 2720 7.615365 ACTCCAAAGTGATATAATGCCTTTGAA 59.385 33.333 10.97 0.00 42.77 2.69
2521 2721 7.118723 ACTCCAAAGTGATATAATGCCTTTGA 58.881 34.615 10.97 0.00 42.77 2.69
2522 2722 7.338800 ACTCCAAAGTGATATAATGCCTTTG 57.661 36.000 0.00 0.00 40.87 2.77
2537 2737 1.456287 GCCCTGACCACTCCAAAGT 59.544 57.895 0.00 0.00 35.60 2.66
2538 2738 1.672356 CGCCCTGACCACTCCAAAG 60.672 63.158 0.00 0.00 0.00 2.77
2539 2739 2.429930 CGCCCTGACCACTCCAAA 59.570 61.111 0.00 0.00 0.00 3.28
2540 2740 4.329545 GCGCCCTGACCACTCCAA 62.330 66.667 0.00 0.00 0.00 3.53
2542 2742 3.842925 TTTGCGCCCTGACCACTCC 62.843 63.158 4.18 0.00 0.00 3.85
2545 2745 2.281484 TCTTTGCGCCCTGACCAC 60.281 61.111 4.18 0.00 0.00 4.16
2546 2746 1.476845 TAGTCTTTGCGCCCTGACCA 61.477 55.000 4.18 0.00 0.00 4.02
2547 2747 0.107654 ATAGTCTTTGCGCCCTGACC 60.108 55.000 4.18 0.00 0.00 4.02
2548 2748 2.596904 TATAGTCTTTGCGCCCTGAC 57.403 50.000 4.18 10.29 0.00 3.51
2549 2749 3.306088 GCTATATAGTCTTTGCGCCCTGA 60.306 47.826 4.18 0.00 0.00 3.86
2551 2751 2.632996 TGCTATATAGTCTTTGCGCCCT 59.367 45.455 4.18 0.00 0.00 5.19
2552 2752 2.737252 GTGCTATATAGTCTTTGCGCCC 59.263 50.000 4.18 0.00 0.00 6.13
2553 2753 3.654414 AGTGCTATATAGTCTTTGCGCC 58.346 45.455 4.18 0.00 0.00 6.53
2554 2754 5.864474 ACATAGTGCTATATAGTCTTTGCGC 59.136 40.000 11.38 0.00 0.00 6.09
2555 2755 9.014533 CATACATAGTGCTATATAGTCTTTGCG 57.985 37.037 11.38 5.35 0.00 4.85
2556 2756 9.862371 ACATACATAGTGCTATATAGTCTTTGC 57.138 33.333 11.38 0.00 0.00 3.68
2560 2760 8.961634 CACCACATACATAGTGCTATATAGTCT 58.038 37.037 11.38 11.74 35.69 3.24
2571 2771 9.002600 ACATTATTATGCACCACATACATAGTG 57.997 33.333 0.00 0.00 41.02 2.74
2575 2775 9.519191 ACATACATTATTATGCACCACATACAT 57.481 29.630 0.00 0.00 41.02 2.29
2580 2780 8.296000 GCAATACATACATTATTATGCACCACA 58.704 33.333 0.00 0.00 35.03 4.17
2582 2782 8.634335 AGCAATACATACATTATTATGCACCA 57.366 30.769 0.00 0.00 35.03 4.17
2620 2820 8.211030 TGGTCACATCTCTGATCCATATTAAT 57.789 34.615 0.00 0.00 0.00 1.40
2621 2821 7.616528 TGGTCACATCTCTGATCCATATTAA 57.383 36.000 0.00 0.00 0.00 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.