Multiple sequence alignment - TraesCS6B01G066800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G066800 chr6B 100.000 4997 0 0 1 4997 44829278 44824282 0.000000e+00 9228.0
1 TraesCS6B01G066800 chr6B 87.442 645 76 2 3361 4005 44291801 44291162 0.000000e+00 737.0
2 TraesCS6B01G066800 chr6B 87.776 589 32 16 4440 4997 429619758 429619179 0.000000e+00 652.0
3 TraesCS6B01G066800 chr6B 76.414 937 144 43 2090 3000 44293035 44292150 7.680000e-118 435.0
4 TraesCS6B01G066800 chr6B 88.076 369 33 5 1250 1617 44293787 44293429 1.290000e-115 427.0
5 TraesCS6B01G066800 chr6B 100.000 48 0 0 810 857 44828437 44828390 6.890000e-14 89.8
6 TraesCS6B01G066800 chr6B 100.000 48 0 0 842 889 44828469 44828422 6.890000e-14 89.8
7 TraesCS6B01G066800 chrUn 89.654 2136 143 32 2090 4198 94876631 94874547 0.000000e+00 2649.0
8 TraesCS6B01G066800 chrUn 95.103 776 35 2 842 1617 94878435 94877663 0.000000e+00 1219.0
9 TraesCS6B01G066800 chrUn 86.499 637 80 3 3361 3997 94862871 94862241 0.000000e+00 695.0
10 TraesCS6B01G066800 chrUn 87.617 533 47 14 1090 1617 94865094 94864576 7.160000e-168 601.0
11 TraesCS6B01G066800 chrUn 77.229 931 139 38 2092 3000 94864180 94863301 1.260000e-130 477.0
12 TraesCS6B01G066800 chrUn 85.057 435 51 7 44 472 94879587 94879161 9.940000e-117 431.0
13 TraesCS6B01G066800 chrUn 81.654 387 36 11 1645 2006 94877406 94877030 6.330000e-74 289.0
14 TraesCS6B01G066800 chrUn 92.233 103 7 1 701 803 94878910 94878809 1.450000e-30 145.0
15 TraesCS6B01G066800 chrUn 90.909 99 7 2 1996 2092 289138443 289138345 1.130000e-26 132.0
16 TraesCS6B01G066800 chrUn 98.361 61 1 0 801 861 94878444 94878384 1.900000e-19 108.0
17 TraesCS6B01G066800 chrUn 92.157 51 4 0 4192 4242 94861943 94861893 6.940000e-09 73.1
18 TraesCS6B01G066800 chr6A 89.050 2137 150 38 2090 4198 25769017 25766937 0.000000e+00 2573.0
19 TraesCS6B01G066800 chr6A 89.796 833 66 14 789 1617 25771727 25770910 0.000000e+00 1050.0
20 TraesCS6B01G066800 chr6A 86.991 638 78 2 3361 3997 25702887 25702254 0.000000e+00 713.0
21 TraesCS6B01G066800 chr6A 81.760 784 101 15 44 803 25772781 25772016 7.110000e-173 617.0
22 TraesCS6B01G066800 chr6A 86.441 531 53 14 1090 1615 25704977 25704461 9.390000e-157 564.0
23 TraesCS6B01G066800 chr6A 76.389 936 137 57 2090 3000 25704116 25703240 1.290000e-115 427.0
24 TraesCS6B01G066800 chr6A 86.957 92 8 3 810 899 25771674 25771585 3.180000e-17 100.0
25 TraesCS6B01G066800 chr6A 95.161 62 2 1 801 861 25771652 25771591 4.120000e-16 97.1
26 TraesCS6B01G066800 chr6A 92.157 51 4 0 4192 4242 25702060 25702010 6.940000e-09 73.1
27 TraesCS6B01G066800 chr4A 98.746 558 7 0 4440 4997 738879111 738879668 0.000000e+00 992.0
28 TraesCS6B01G066800 chr4A 83.284 341 29 16 4439 4754 552029289 552029626 6.330000e-74 289.0
29 TraesCS6B01G066800 chr5B 98.569 559 8 0 4439 4997 321631851 321631293 0.000000e+00 989.0
30 TraesCS6B01G066800 chr5B 91.061 537 24 7 4463 4997 21037302 21037816 0.000000e+00 704.0
31 TraesCS6B01G066800 chr5B 90.909 99 7 2 1996 2092 22106496 22106398 1.130000e-26 132.0
32 TraesCS6B01G066800 chr5B 90.909 99 7 2 1996 2092 22114560 22114462 1.130000e-26 132.0
33 TraesCS6B01G066800 chr7A 98.387 558 9 0 4440 4997 120099710 120099153 0.000000e+00 981.0
34 TraesCS6B01G066800 chr7A 100.000 42 0 0 1 42 106020404 106020445 1.490000e-10 78.7
35 TraesCS6B01G066800 chr7D 88.889 576 22 5 4439 4997 543214595 543214045 0.000000e+00 671.0
36 TraesCS6B01G066800 chr7D 100.000 43 0 0 1 43 106995470 106995428 4.150000e-11 80.5
37 TraesCS6B01G066800 chr7D 100.000 42 0 0 2 43 8975144 8975103 1.490000e-10 78.7
38 TraesCS6B01G066800 chr4B 87.648 591 30 15 4440 4997 85602314 85602894 0.000000e+00 647.0
39 TraesCS6B01G066800 chr4B 95.745 47 1 1 1 47 665551696 665551741 1.930000e-09 75.0
40 TraesCS6B01G066800 chr2B 87.310 591 34 17 4440 4997 605445483 605446065 5.460000e-179 638.0
41 TraesCS6B01G066800 chr2B 96.512 86 1 2 2008 2091 644171830 644171915 1.880000e-29 141.0
42 TraesCS6B01G066800 chr2B 93.548 93 4 2 2001 2092 690207308 690207399 2.430000e-28 137.0
43 TraesCS6B01G066800 chr3B 87.310 591 32 15 4440 4997 499810260 499809680 1.960000e-178 636.0
44 TraesCS6B01G066800 chr3B 86.824 592 38 14 4439 4997 707898457 707899041 4.250000e-175 625.0
45 TraesCS6B01G066800 chr3A 86.464 591 45 10 4440 4997 506392893 506392305 2.560000e-172 616.0
46 TraesCS6B01G066800 chr3A 97.619 84 2 0 2008 2091 19063357 19063440 1.450000e-30 145.0
47 TraesCS6B01G066800 chr4D 79.570 651 81 20 46 676 27394258 27394876 7.740000e-113 418.0
48 TraesCS6B01G066800 chr2A 97.619 84 2 0 2008 2091 516019971 516020054 1.450000e-30 145.0
49 TraesCS6B01G066800 chr1B 97.619 84 2 0 2008 2091 524160454 524160537 1.450000e-30 145.0
50 TraesCS6B01G066800 chr7B 91.919 99 5 2 2008 2105 213040729 213040825 8.730000e-28 135.0
51 TraesCS6B01G066800 chr6D 100.000 43 0 0 1 43 365269477 365269435 4.150000e-11 80.5
52 TraesCS6B01G066800 chr6D 100.000 42 0 0 3 44 295618190 295618231 1.490000e-10 78.7
53 TraesCS6B01G066800 chr3D 95.745 47 1 1 2 47 69468180 69468226 1.930000e-09 75.0
54 TraesCS6B01G066800 chr3D 97.727 44 0 1 1 44 455750222 455750264 1.930000e-09 75.0
55 TraesCS6B01G066800 chr1D 97.674 43 1 0 2 44 350662334 350662376 1.930000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G066800 chr6B 44824282 44829278 4996 True 3135.866667 9228 100.000000 1 4997 3 chr6B.!!$R3 4996
1 TraesCS6B01G066800 chr6B 429619179 429619758 579 True 652.000000 652 87.776000 4440 4997 1 chr6B.!!$R1 557
2 TraesCS6B01G066800 chr6B 44291162 44293787 2625 True 533.000000 737 83.977333 1250 4005 3 chr6B.!!$R2 2755
3 TraesCS6B01G066800 chrUn 94874547 94879587 5040 True 806.833333 2649 90.343667 44 4198 6 chrUn.!!$R3 4154
4 TraesCS6B01G066800 chrUn 94861893 94865094 3201 True 461.525000 695 85.875500 1090 4242 4 chrUn.!!$R2 3152
5 TraesCS6B01G066800 chr6A 25766937 25772781 5844 True 887.420000 2573 88.544800 44 4198 5 chr6A.!!$R2 4154
6 TraesCS6B01G066800 chr6A 25702010 25704977 2967 True 444.275000 713 85.494500 1090 4242 4 chr6A.!!$R1 3152
7 TraesCS6B01G066800 chr4A 738879111 738879668 557 False 992.000000 992 98.746000 4440 4997 1 chr4A.!!$F2 557
8 TraesCS6B01G066800 chr5B 321631293 321631851 558 True 989.000000 989 98.569000 4439 4997 1 chr5B.!!$R3 558
9 TraesCS6B01G066800 chr5B 21037302 21037816 514 False 704.000000 704 91.061000 4463 4997 1 chr5B.!!$F1 534
10 TraesCS6B01G066800 chr7A 120099153 120099710 557 True 981.000000 981 98.387000 4440 4997 1 chr7A.!!$R1 557
11 TraesCS6B01G066800 chr7D 543214045 543214595 550 True 671.000000 671 88.889000 4439 4997 1 chr7D.!!$R3 558
12 TraesCS6B01G066800 chr4B 85602314 85602894 580 False 647.000000 647 87.648000 4440 4997 1 chr4B.!!$F1 557
13 TraesCS6B01G066800 chr2B 605445483 605446065 582 False 638.000000 638 87.310000 4440 4997 1 chr2B.!!$F1 557
14 TraesCS6B01G066800 chr3B 499809680 499810260 580 True 636.000000 636 87.310000 4440 4997 1 chr3B.!!$R1 557
15 TraesCS6B01G066800 chr3B 707898457 707899041 584 False 625.000000 625 86.824000 4439 4997 1 chr3B.!!$F1 558
16 TraesCS6B01G066800 chr3A 506392305 506392893 588 True 616.000000 616 86.464000 4440 4997 1 chr3A.!!$R1 557
17 TraesCS6B01G066800 chr4D 27394258 27394876 618 False 418.000000 418 79.570000 46 676 1 chr4D.!!$F1 630

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
529 567 0.382515 GCGGCCGCCATGTATTTTTA 59.617 50.000 39.89 0.0 34.56 1.52 F
2264 4147 0.108585 AAATGGTGTGGTGACGCTCT 59.891 50.000 0.00 0.0 42.82 4.09 F
2336 4229 0.038251 TGAGCAGTGAATTCTCGCGT 60.038 50.000 5.77 0.0 37.15 6.01 F
3117 5032 1.544691 TCGTTCAAGGGCTACTGAGAC 59.455 52.381 0.00 0.0 0.00 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2317 4210 0.038251 ACGCGAGAATTCACTGCTCA 60.038 50.0 15.93 0.00 0.00 4.26 R
3535 5580 0.031178 CAAAGTGCCTTGGTGACTGC 59.969 55.0 0.00 0.00 0.00 4.40 R
3798 5843 0.035630 GGTTGAGCAGCAGGATGTCT 60.036 55.0 0.00 0.00 39.31 3.41 R
4309 6485 0.106894 AAGGGACGCATAAGGCTAGC 59.893 55.0 6.04 6.04 41.67 3.42 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
77 78 2.431771 CGCGACCAACACCGATGA 60.432 61.111 0.00 0.00 0.00 2.92
109 110 3.268986 CGGCACCGCAAAATACCA 58.731 55.556 0.00 0.00 0.00 3.25
150 151 3.673484 GGCGCCATATGCCGCAAT 61.673 61.111 29.27 0.00 43.70 3.56
151 152 2.336088 GCGCCATATGCCGCAATT 59.664 55.556 24.58 0.00 38.69 2.32
186 187 4.058817 AGCTGTTACCGAAGAAGTTGAAG 58.941 43.478 0.00 0.00 0.00 3.02
196 197 1.494721 AGAAGTTGAAGGCTGGAACCA 59.505 47.619 5.51 0.00 0.00 3.67
229 234 3.004752 AGTTGGAACCTACATGGATGC 57.995 47.619 7.98 0.00 39.71 3.91
236 241 2.200081 ACCTACATGGATGCTGGAACT 58.800 47.619 0.00 0.00 39.71 3.01
245 251 2.703007 GGATGCTGGAACTAGAGACCAT 59.297 50.000 0.00 0.00 33.08 3.55
256 262 6.481644 GGAACTAGAGACCATAAATGCTTCTG 59.518 42.308 0.00 0.00 0.00 3.02
285 293 2.733956 TGTTTTTGCTGGAACCAGAGT 58.266 42.857 22.96 0.00 46.30 3.24
313 321 2.021584 GCGAGCACACACATCGTCA 61.022 57.895 0.00 0.00 38.66 4.35
336 344 1.975363 GCGATGCTGCAACAGAGGTC 61.975 60.000 6.36 0.00 32.44 3.85
339 347 1.830587 ATGCTGCAACAGAGGTCGGA 61.831 55.000 6.36 0.00 32.44 4.55
347 355 3.453679 AGAGGTCGGAGAAGCGGC 61.454 66.667 0.00 0.00 39.69 6.53
399 407 2.759839 TGGATGCAACATGGGATCAT 57.240 45.000 0.00 0.00 37.36 2.45
451 461 0.394216 TGCTGCTATTTGGCGATGGT 60.394 50.000 0.00 0.00 34.52 3.55
489 512 1.169661 TCGATGGCAAGGCAAAACGT 61.170 50.000 0.00 0.00 0.00 3.99
501 538 1.822186 AAAACGTGCAAGGCCGACT 60.822 52.632 4.26 0.00 0.00 4.18
529 567 0.382515 GCGGCCGCCATGTATTTTTA 59.617 50.000 39.89 0.00 34.56 1.52
530 568 1.862411 GCGGCCGCCATGTATTTTTAC 60.862 52.381 39.89 6.34 34.56 2.01
534 572 3.862845 GGCCGCCATGTATTTTTACTTTG 59.137 43.478 3.91 0.00 0.00 2.77
623 662 3.118454 CCAAATCGGACGCACGCT 61.118 61.111 0.00 0.00 36.56 5.07
652 692 2.265424 CAAATTTGGGCCGGCTGG 59.735 61.111 28.56 7.41 38.77 4.85
742 807 2.825205 TGTCCATGTGTGAGCATATCG 58.175 47.619 0.00 0.00 0.00 2.92
751 816 4.202243 TGTGTGAGCATATCGATGGATTGA 60.202 41.667 8.54 0.00 34.00 2.57
759 824 8.118976 AGCATATCGATGGATTGAAAATCATT 57.881 30.769 8.54 0.00 34.00 2.57
906 1314 3.451141 ACCATGCGCAAAAAGAAAAGA 57.549 38.095 17.11 0.00 0.00 2.52
918 1326 9.607285 CGCAAAAAGAAAAGAAAGCTACTATTA 57.393 29.630 0.00 0.00 0.00 0.98
947 1355 9.225201 CCATATCAAAAACGATTAACTCATGTG 57.775 33.333 0.00 0.00 0.00 3.21
1006 1414 2.787473 TTTCATCTCTCCCATGCGTT 57.213 45.000 0.00 0.00 0.00 4.84
1007 1415 2.028420 TTCATCTCTCCCATGCGTTG 57.972 50.000 0.00 0.00 0.00 4.10
1038 1446 5.689961 GGATAATTCTCTCGTGAAAGCTCTC 59.310 44.000 0.00 0.00 0.00 3.20
1043 1451 0.174617 CTCGTGAAAGCTCTCCCCTC 59.825 60.000 0.00 0.00 0.00 4.30
1046 1454 0.988063 GTGAAAGCTCTCCCCTCCTT 59.012 55.000 0.00 0.00 0.00 3.36
1047 1455 1.065782 GTGAAAGCTCTCCCCTCCTTC 60.066 57.143 0.00 0.00 0.00 3.46
1048 1456 0.544223 GAAAGCTCTCCCCTCCTTCC 59.456 60.000 0.00 0.00 0.00 3.46
1137 1545 5.604650 CCTCCTCCCAGTAACTCTCATTATT 59.395 44.000 0.00 0.00 0.00 1.40
1193 1604 4.740822 GCCGCACCCCAACATCCT 62.741 66.667 0.00 0.00 0.00 3.24
1292 1703 3.256960 GTCCTGCCCCTTCCACCA 61.257 66.667 0.00 0.00 0.00 4.17
1639 3090 2.562912 CAACTGCATGTCCACGGC 59.437 61.111 0.00 0.00 0.00 5.68
1641 3092 3.490031 AACTGCATGTCCACGGCCA 62.490 57.895 2.24 0.00 0.00 5.36
1642 3093 3.434319 CTGCATGTCCACGGCCAC 61.434 66.667 2.24 0.00 0.00 5.01
1746 3285 6.675026 AGGGAAAAACTTAAAATACACGCTC 58.325 36.000 0.00 0.00 0.00 5.03
1747 3286 6.263617 AGGGAAAAACTTAAAATACACGCTCA 59.736 34.615 0.00 0.00 0.00 4.26
1757 3296 1.460504 TACACGCTCAGGTCACCTAG 58.539 55.000 0.00 0.00 29.64 3.02
1800 3343 6.695429 TCATTAGATGATAGCTAGCCACAAG 58.305 40.000 12.13 0.00 33.59 3.16
1915 3464 0.254747 TCCTTGGTAAATCAGGGGCG 59.745 55.000 0.00 0.00 34.98 6.13
1938 3487 4.804139 GGTTACTGTAATGTGAGATGTCGG 59.196 45.833 3.23 0.00 0.00 4.79
1939 3488 3.526931 ACTGTAATGTGAGATGTCGGG 57.473 47.619 0.00 0.00 0.00 5.14
1953 3502 1.621317 TGTCGGGAGCATGAGTAAACA 59.379 47.619 0.00 0.00 0.00 2.83
1956 3505 3.063997 GTCGGGAGCATGAGTAAACAATG 59.936 47.826 0.00 0.00 0.00 2.82
1957 3506 2.223340 CGGGAGCATGAGTAAACAATGC 60.223 50.000 0.00 10.97 38.43 3.56
1964 3516 5.022021 GCATGAGTAAACAATGCGTAGTTC 58.978 41.667 0.00 0.00 0.00 3.01
1984 3536 6.599445 AGTTCTGGGATATTCTCAGGAAATG 58.401 40.000 4.64 0.00 44.98 2.32
1988 3540 7.819500 TCTGGGATATTCTCAGGAAATGATTT 58.180 34.615 4.64 0.00 44.98 2.17
2006 3558 8.441312 AATGATTTGGGTGATGCATATTTTTC 57.559 30.769 0.00 0.00 0.00 2.29
2009 3561 5.999205 TTGGGTGATGCATATTTTTCACT 57.001 34.783 13.85 0.00 38.76 3.41
2011 3563 4.402155 TGGGTGATGCATATTTTTCACTCC 59.598 41.667 12.09 12.41 38.54 3.85
2014 3566 5.221126 GGTGATGCATATTTTTCACTCCCTC 60.221 44.000 13.85 0.00 38.76 4.30
2015 3567 4.889409 TGATGCATATTTTTCACTCCCTCC 59.111 41.667 0.00 0.00 0.00 4.30
2018 3570 3.694566 GCATATTTTTCACTCCCTCCGTT 59.305 43.478 0.00 0.00 0.00 4.44
2024 3734 3.284793 TTCACTCCCTCCGTTTCAAAA 57.715 42.857 0.00 0.00 0.00 2.44
2025 3735 3.502123 TCACTCCCTCCGTTTCAAAAT 57.498 42.857 0.00 0.00 0.00 1.82
2030 3740 6.072175 TCACTCCCTCCGTTTCAAAATAAATG 60.072 38.462 0.00 0.00 0.00 2.32
2033 3743 6.007703 TCCCTCCGTTTCAAAATAAATGACT 58.992 36.000 0.00 0.00 0.00 3.41
2034 3744 6.150474 TCCCTCCGTTTCAAAATAAATGACTC 59.850 38.462 0.00 0.00 0.00 3.36
2037 3747 7.326063 CCTCCGTTTCAAAATAAATGACTCAAC 59.674 37.037 0.00 0.00 0.00 3.18
2080 3790 9.736023 ACAAAGTTGAGTCATCTATTTTGAAAC 57.264 29.630 15.99 0.00 38.91 2.78
2081 3791 8.895845 CAAAGTTGAGTCATCTATTTTGAAACG 58.104 33.333 4.14 0.00 38.91 3.60
2082 3792 7.133891 AGTTGAGTCATCTATTTTGAAACGG 57.866 36.000 1.70 0.00 0.00 4.44
2083 3793 6.934645 AGTTGAGTCATCTATTTTGAAACGGA 59.065 34.615 1.70 0.00 0.00 4.69
2085 3795 5.874810 TGAGTCATCTATTTTGAAACGGAGG 59.125 40.000 0.00 0.00 0.00 4.30
2086 3796 5.186198 AGTCATCTATTTTGAAACGGAGGG 58.814 41.667 0.00 0.00 0.00 4.30
2087 3797 5.045869 AGTCATCTATTTTGAAACGGAGGGA 60.046 40.000 0.00 0.00 0.00 4.20
2088 3798 5.294552 GTCATCTATTTTGAAACGGAGGGAG 59.705 44.000 0.00 0.00 0.00 4.30
2165 4045 1.133790 GTGCCTGGCTTCATGAATCAC 59.866 52.381 21.03 6.91 0.00 3.06
2173 4053 5.367302 TGGCTTCATGAATCACGATCATTA 58.633 37.500 8.96 0.00 35.38 1.90
2198 4078 3.005472 GGGCAAAGGACTGAAACTTAACC 59.995 47.826 0.00 0.00 0.00 2.85
2254 4137 4.955925 TTATTCCGTAGCAAATGGTGTG 57.044 40.909 0.00 0.00 35.53 3.82
2263 4146 0.238289 CAAATGGTGTGGTGACGCTC 59.762 55.000 0.00 0.00 42.82 5.03
2264 4147 0.108585 AAATGGTGTGGTGACGCTCT 59.891 50.000 0.00 0.00 42.82 4.09
2265 4148 0.603707 AATGGTGTGGTGACGCTCTG 60.604 55.000 0.00 0.00 42.82 3.35
2266 4149 3.044305 GGTGTGGTGACGCTCTGC 61.044 66.667 0.00 0.00 42.82 4.26
2267 4150 2.280119 GTGTGGTGACGCTCTGCA 60.280 61.111 0.00 0.00 42.82 4.41
2268 4151 1.669115 GTGTGGTGACGCTCTGCAT 60.669 57.895 0.00 0.00 42.82 3.96
2269 4152 1.668793 TGTGGTGACGCTCTGCATG 60.669 57.895 0.00 0.00 42.82 4.06
2270 4153 2.743538 TGGTGACGCTCTGCATGC 60.744 61.111 11.82 11.82 0.00 4.06
2271 4154 2.435586 GGTGACGCTCTGCATGCT 60.436 61.111 20.33 0.00 0.00 3.79
2272 4155 2.037136 GGTGACGCTCTGCATGCTT 61.037 57.895 20.33 1.02 0.00 3.91
2298 4191 3.064207 TGCGGTTGAGTACAATTCTGTC 58.936 45.455 0.00 0.00 38.32 3.51
2315 4208 1.661509 TCGTGTTGTCTGCTGAGCG 60.662 57.895 0.00 0.00 0.00 5.03
2316 4209 2.553268 GTGTTGTCTGCTGAGCGC 59.447 61.111 0.00 0.00 39.77 5.92
2317 4210 1.958205 GTGTTGTCTGCTGAGCGCT 60.958 57.895 11.27 11.27 40.11 5.92
2318 4211 1.957695 TGTTGTCTGCTGAGCGCTG 60.958 57.895 18.48 1.20 40.11 5.18
2319 4212 1.665916 GTTGTCTGCTGAGCGCTGA 60.666 57.895 18.48 5.01 43.24 4.26
2320 4213 1.373873 TTGTCTGCTGAGCGCTGAG 60.374 57.895 20.37 20.37 45.57 3.35
2321 4214 3.187414 GTCTGCTGAGCGCTGAGC 61.187 66.667 37.34 37.34 45.57 4.26
2336 4229 0.038251 TGAGCAGTGAATTCTCGCGT 60.038 50.000 5.77 0.00 37.15 6.01
2341 4234 3.307242 AGCAGTGAATTCTCGCGTTATTC 59.693 43.478 5.77 13.74 37.15 1.75
2373 4266 8.608317 GTTTTTATTTTAGGTTGCAACACATGT 58.392 29.630 29.55 13.51 0.00 3.21
2420 4323 7.745620 ACACCCACAAAAATAGTTTCTAGAG 57.254 36.000 0.00 0.00 0.00 2.43
2440 4343 5.725362 AGAGGCAGAAGTATAATAATCCGC 58.275 41.667 0.00 0.00 0.00 5.54
2466 4370 9.329913 CAAGAATACCTTTTTGTCATTTCTACG 57.670 33.333 0.00 0.00 31.42 3.51
2479 4383 7.796838 TGTCATTTCTACGTTTTGATGAAGAG 58.203 34.615 0.00 0.00 0.00 2.85
2530 4435 6.528537 AGCATTTTTATTGTCTGGCACATA 57.471 33.333 0.00 0.00 38.20 2.29
2586 4494 8.031277 AGTATTTCGTCCTACTTTGATTACGTT 58.969 33.333 0.00 0.00 0.00 3.99
2620 4528 7.918536 ATATATCCTTGTGCTAAAGATGCAG 57.081 36.000 0.00 0.00 41.41 4.41
2624 4534 3.120060 CCTTGTGCTAAAGATGCAGACAC 60.120 47.826 0.00 0.00 41.41 3.67
2698 4609 7.513968 CCGATAATTTAGAAGCTCATACTTGC 58.486 38.462 0.00 0.00 0.00 4.01
2949 4864 5.620206 TGCTGACGATTGGGTAAATATCAT 58.380 37.500 0.00 0.00 0.00 2.45
3000 4915 7.069877 ACACTGGACACTGGTAAGTATTTAA 57.930 36.000 0.00 0.00 33.79 1.52
3001 4916 7.159372 ACACTGGACACTGGTAAGTATTTAAG 58.841 38.462 0.00 0.00 33.79 1.85
3003 4918 7.660208 CACTGGACACTGGTAAGTATTTAAGTT 59.340 37.037 0.00 0.00 33.79 2.66
3006 4921 9.880157 TGGACACTGGTAAGTATTTAAGTTATC 57.120 33.333 0.00 0.00 33.79 1.75
3063 4978 2.161609 GTGTTCCCCTCTTTTATGTGCG 59.838 50.000 0.00 0.00 0.00 5.34
3117 5032 1.544691 TCGTTCAAGGGCTACTGAGAC 59.455 52.381 0.00 0.00 0.00 3.36
3160 5165 9.549509 TTGATAACGAATTTTAACACTGCATAC 57.450 29.630 0.00 0.00 0.00 2.39
3178 5183 5.600069 TGCATACTCTCTATGTTGGAGTCAT 59.400 40.000 0.00 0.00 40.29 3.06
3185 5190 5.102953 TCTATGTTGGAGTCATTTGGAGG 57.897 43.478 0.00 0.00 0.00 4.30
3214 5224 4.359706 CGTTTGTGCCTAGAAAAAGCTTT 58.640 39.130 5.69 5.69 0.00 3.51
3289 5324 2.965831 AGTGTCTGGTGATGTGTACTGT 59.034 45.455 0.00 0.00 0.00 3.55
3290 5325 3.005897 AGTGTCTGGTGATGTGTACTGTC 59.994 47.826 0.00 0.00 0.00 3.51
3292 5327 3.641436 TGTCTGGTGATGTGTACTGTCTT 59.359 43.478 0.00 0.00 0.00 3.01
3293 5328 4.830600 TGTCTGGTGATGTGTACTGTCTTA 59.169 41.667 0.00 0.00 0.00 2.10
3294 5329 5.480422 TGTCTGGTGATGTGTACTGTCTTAT 59.520 40.000 0.00 0.00 0.00 1.73
3295 5330 6.661805 TGTCTGGTGATGTGTACTGTCTTATA 59.338 38.462 0.00 0.00 0.00 0.98
3296 5331 6.973474 GTCTGGTGATGTGTACTGTCTTATAC 59.027 42.308 0.00 0.00 0.00 1.47
3297 5332 6.661805 TCTGGTGATGTGTACTGTCTTATACA 59.338 38.462 0.00 0.00 36.42 2.29
3342 5377 7.213216 TGTGAAAGCTATATTTGCAGTTTGA 57.787 32.000 0.00 0.00 0.00 2.69
3356 5401 5.499313 TGCAGTTTGATCATGGATTGTCTA 58.501 37.500 0.00 0.00 0.00 2.59
3358 5403 6.127925 TGCAGTTTGATCATGGATTGTCTAAC 60.128 38.462 0.00 0.00 0.00 2.34
3359 5404 6.094603 GCAGTTTGATCATGGATTGTCTAACT 59.905 38.462 0.00 0.00 34.85 2.24
3535 5580 4.081030 CTGAAGCTGTGGCGCACG 62.081 66.667 10.83 3.89 44.37 5.34
3621 5666 2.906389 TCCTGCAAGAACATGAGGTACT 59.094 45.455 0.00 0.00 37.66 2.73
3622 5667 3.327757 TCCTGCAAGAACATGAGGTACTT 59.672 43.478 0.00 0.00 34.11 2.24
3625 5670 5.010012 CCTGCAAGAACATGAGGTACTTTTT 59.990 40.000 0.00 0.00 34.11 1.94
3654 5699 5.579718 CCAAGCTTTTCATGATCTGACATC 58.420 41.667 0.00 0.00 32.17 3.06
3658 5703 6.416415 AGCTTTTCATGATCTGACATCTTCT 58.584 36.000 0.00 0.00 32.17 2.85
3671 5716 9.909644 ATCTGACATCTTCTTCAAAATTTTGAG 57.090 29.630 27.52 21.85 46.68 3.02
3672 5717 8.906867 TCTGACATCTTCTTCAAAATTTTGAGT 58.093 29.630 27.52 21.21 46.68 3.41
3673 5718 9.178427 CTGACATCTTCTTCAAAATTTTGAGTC 57.822 33.333 27.52 26.27 46.68 3.36
3674 5719 8.906867 TGACATCTTCTTCAAAATTTTGAGTCT 58.093 29.630 28.56 15.52 46.68 3.24
3675 5720 9.741647 GACATCTTCTTCAAAATTTTGAGTCTT 57.258 29.630 27.52 13.07 46.68 3.01
3681 5726 8.166422 TCTTCAAAATTTTGAGTCTTAGACCC 57.834 34.615 27.52 0.00 46.68 4.46
3682 5727 6.894339 TCAAAATTTTGAGTCTTAGACCCC 57.106 37.500 26.01 2.23 41.88 4.95
3683 5728 5.773176 TCAAAATTTTGAGTCTTAGACCCCC 59.227 40.000 26.01 0.00 41.88 5.40
3787 5832 2.436646 CATTGCTCCGGGAAGCGT 60.437 61.111 10.30 0.00 45.54 5.07
3798 5843 0.038892 GGGAAGCGTTAGTCGACACA 60.039 55.000 19.50 1.48 42.86 3.72
3806 5851 2.161808 CGTTAGTCGACACAGACATCCT 59.838 50.000 19.50 0.00 43.24 3.24
3831 5876 2.234908 GCTCAACCTGACCTACATGAGT 59.765 50.000 0.00 0.00 36.26 3.41
3843 5888 1.446792 CATGAGTGAGTTCCGCGCT 60.447 57.895 5.56 0.00 0.00 5.92
3948 5993 3.755628 CCGGACACGTGGGTCGAT 61.756 66.667 21.57 0.00 42.86 3.59
3999 6044 0.178953 AGCAGGGCAAAGGTTGATGT 60.179 50.000 0.00 0.00 0.00 3.06
4006 6051 0.179250 CAAAGGTTGATGTCGCGTCG 60.179 55.000 5.77 0.00 0.00 5.12
4015 6060 2.576053 GTCGCGTCGCATCGAAGA 60.576 61.111 18.75 1.79 45.75 2.87
4035 6080 6.094186 CGAAGATCGGATTATGATCAGGACTA 59.906 42.308 0.09 0.00 43.73 2.59
4038 6083 4.736473 TCGGATTATGATCAGGACTACCA 58.264 43.478 0.09 0.00 38.94 3.25
4039 6084 5.333581 TCGGATTATGATCAGGACTACCAT 58.666 41.667 0.09 0.00 38.94 3.55
4075 6120 2.874648 TACCAAGGGCATGCTGAGCG 62.875 60.000 18.92 5.40 0.00 5.03
4107 6152 4.444164 GGAACAACATGACCCCAAATGTTT 60.444 41.667 0.00 0.00 42.85 2.83
4136 6181 4.544564 AGCTAAGGTAGGGAGAGATGAA 57.455 45.455 0.00 0.00 0.00 2.57
4167 6257 2.668550 GGGCGAGCCGACTTTGTT 60.669 61.111 8.14 0.00 34.07 2.83
4177 6269 5.560966 AGCCGACTTTGTTATACCAATTG 57.439 39.130 0.00 0.00 0.00 2.32
4178 6270 5.250200 AGCCGACTTTGTTATACCAATTGA 58.750 37.500 7.12 0.00 0.00 2.57
4179 6271 5.885912 AGCCGACTTTGTTATACCAATTGAT 59.114 36.000 7.12 0.00 0.00 2.57
4202 6378 6.928979 TGTTCCTTTCTATTTTGAACGTGA 57.071 33.333 0.00 0.00 38.46 4.35
4204 6380 7.936584 TGTTCCTTTCTATTTTGAACGTGAAT 58.063 30.769 0.00 0.00 38.46 2.57
4206 6382 7.141100 TCCTTTCTATTTTGAACGTGAATCC 57.859 36.000 0.00 0.00 0.00 3.01
4242 6418 4.224433 CTGAATGTTGAGTGTTGCATGAC 58.776 43.478 0.00 0.00 0.00 3.06
4243 6419 3.004629 TGAATGTTGAGTGTTGCATGACC 59.995 43.478 0.00 0.00 0.00 4.02
4244 6420 2.049888 TGTTGAGTGTTGCATGACCA 57.950 45.000 0.00 0.00 0.00 4.02
4245 6421 2.373224 TGTTGAGTGTTGCATGACCAA 58.627 42.857 0.00 0.00 0.00 3.67
4246 6422 2.957680 TGTTGAGTGTTGCATGACCAAT 59.042 40.909 0.00 0.00 0.00 3.16
4247 6423 4.140536 TGTTGAGTGTTGCATGACCAATA 58.859 39.130 0.00 0.00 0.00 1.90
4248 6424 4.766373 TGTTGAGTGTTGCATGACCAATAT 59.234 37.500 0.00 0.00 0.00 1.28
4249 6425 5.106197 TGTTGAGTGTTGCATGACCAATATC 60.106 40.000 0.00 0.00 0.00 1.63
4250 6426 4.847198 TGAGTGTTGCATGACCAATATCT 58.153 39.130 0.00 0.00 0.00 1.98
4251 6427 5.255687 TGAGTGTTGCATGACCAATATCTT 58.744 37.500 0.00 0.00 0.00 2.40
4252 6428 5.124297 TGAGTGTTGCATGACCAATATCTTG 59.876 40.000 0.00 0.00 0.00 3.02
4253 6429 5.255687 AGTGTTGCATGACCAATATCTTGA 58.744 37.500 0.00 0.00 34.04 3.02
4254 6430 5.889853 AGTGTTGCATGACCAATATCTTGAT 59.110 36.000 0.00 0.00 34.04 2.57
4255 6431 6.379133 AGTGTTGCATGACCAATATCTTGATT 59.621 34.615 0.00 0.00 34.04 2.57
4256 6432 7.037438 GTGTTGCATGACCAATATCTTGATTT 58.963 34.615 0.00 0.00 34.04 2.17
4257 6433 7.546667 GTGTTGCATGACCAATATCTTGATTTT 59.453 33.333 0.00 0.00 34.04 1.82
4258 6434 8.095792 TGTTGCATGACCAATATCTTGATTTTT 58.904 29.630 0.00 0.00 34.04 1.94
4259 6435 8.598075 GTTGCATGACCAATATCTTGATTTTTC 58.402 33.333 0.00 0.00 34.04 2.29
4260 6436 7.838884 TGCATGACCAATATCTTGATTTTTCA 58.161 30.769 0.00 0.00 34.04 2.69
4261 6437 8.479689 TGCATGACCAATATCTTGATTTTTCAT 58.520 29.630 0.00 0.00 34.04 2.57
4262 6438 9.970395 GCATGACCAATATCTTGATTTTTCATA 57.030 29.630 0.00 0.00 34.04 2.15
4291 6467 7.873719 TTCTTCAAAGTTACATCACCTTTCA 57.126 32.000 0.00 0.00 0.00 2.69
4292 6468 7.496529 TCTTCAAAGTTACATCACCTTTCAG 57.503 36.000 0.00 0.00 0.00 3.02
4293 6469 5.689383 TCAAAGTTACATCACCTTTCAGC 57.311 39.130 0.00 0.00 0.00 4.26
4294 6470 4.213270 TCAAAGTTACATCACCTTTCAGCG 59.787 41.667 0.00 0.00 0.00 5.18
4295 6471 3.678056 AGTTACATCACCTTTCAGCGA 57.322 42.857 0.00 0.00 0.00 4.93
4296 6472 4.002906 AGTTACATCACCTTTCAGCGAA 57.997 40.909 0.00 0.00 0.00 4.70
4297 6473 4.385825 AGTTACATCACCTTTCAGCGAAA 58.614 39.130 0.00 4.19 0.00 3.46
4298 6474 4.213482 AGTTACATCACCTTTCAGCGAAAC 59.787 41.667 0.00 0.00 0.00 2.78
4299 6475 1.880027 ACATCACCTTTCAGCGAAACC 59.120 47.619 0.00 0.00 0.00 3.27
4300 6476 2.154462 CATCACCTTTCAGCGAAACCT 58.846 47.619 0.00 0.00 0.00 3.50
4301 6477 1.593196 TCACCTTTCAGCGAAACCTG 58.407 50.000 0.00 0.00 0.00 4.00
4302 6478 1.134220 TCACCTTTCAGCGAAACCTGT 60.134 47.619 0.00 0.00 34.47 4.00
4303 6479 1.002468 CACCTTTCAGCGAAACCTGTG 60.002 52.381 0.00 5.12 34.47 3.66
4304 6480 1.134220 ACCTTTCAGCGAAACCTGTGA 60.134 47.619 0.00 0.00 34.47 3.58
4305 6481 1.264288 CCTTTCAGCGAAACCTGTGAC 59.736 52.381 0.00 0.00 34.47 3.67
4306 6482 1.939934 CTTTCAGCGAAACCTGTGACA 59.060 47.619 0.00 0.00 34.47 3.58
4307 6483 1.295792 TTCAGCGAAACCTGTGACAC 58.704 50.000 0.00 0.00 34.47 3.67
4308 6484 0.874175 TCAGCGAAACCTGTGACACG 60.874 55.000 0.22 0.00 34.47 4.49
4309 6485 1.594293 AGCGAAACCTGTGACACGG 60.594 57.895 7.49 7.49 0.00 4.94
4310 6486 2.935955 CGAAACCTGTGACACGGC 59.064 61.111 9.05 0.00 0.00 5.68
4311 6487 1.594293 CGAAACCTGTGACACGGCT 60.594 57.895 9.05 0.00 0.00 5.52
4312 6488 0.319211 CGAAACCTGTGACACGGCTA 60.319 55.000 9.05 0.00 0.00 3.93
4313 6489 1.429463 GAAACCTGTGACACGGCTAG 58.571 55.000 9.05 0.00 0.00 3.42
4314 6490 0.602905 AAACCTGTGACACGGCTAGC 60.603 55.000 6.04 6.04 0.00 3.42
4315 6491 2.125512 CCTGTGACACGGCTAGCC 60.126 66.667 24.75 24.75 0.00 3.93
4316 6492 2.650116 CCTGTGACACGGCTAGCCT 61.650 63.158 30.55 13.30 0.00 4.58
4317 6493 1.293498 CTGTGACACGGCTAGCCTT 59.707 57.895 30.55 20.20 0.00 4.35
4318 6494 0.530744 CTGTGACACGGCTAGCCTTA 59.469 55.000 30.55 7.04 0.00 2.69
4319 6495 1.137086 CTGTGACACGGCTAGCCTTAT 59.863 52.381 30.55 12.21 0.00 1.73
4320 6496 1.134818 TGTGACACGGCTAGCCTTATG 60.135 52.381 30.55 25.44 0.00 1.90
4321 6497 0.179084 TGACACGGCTAGCCTTATGC 60.179 55.000 30.55 19.52 41.71 3.14
4330 6506 4.954933 GCCTTATGCGTCCCTTCA 57.045 55.556 0.00 0.00 0.00 3.02
4331 6507 2.394604 GCCTTATGCGTCCCTTCAC 58.605 57.895 0.00 0.00 0.00 3.18
4332 6508 0.107654 GCCTTATGCGTCCCTTCACT 60.108 55.000 0.00 0.00 0.00 3.41
4333 6509 1.679032 GCCTTATGCGTCCCTTCACTT 60.679 52.381 0.00 0.00 0.00 3.16
4334 6510 2.711542 CCTTATGCGTCCCTTCACTTT 58.288 47.619 0.00 0.00 0.00 2.66
4335 6511 2.420022 CCTTATGCGTCCCTTCACTTTG 59.580 50.000 0.00 0.00 0.00 2.77
4336 6512 3.334691 CTTATGCGTCCCTTCACTTTGA 58.665 45.455 0.00 0.00 0.00 2.69
4337 6513 1.813513 ATGCGTCCCTTCACTTTGAG 58.186 50.000 0.00 0.00 0.00 3.02
4338 6514 0.884704 TGCGTCCCTTCACTTTGAGC 60.885 55.000 0.00 0.00 0.00 4.26
4339 6515 1.901650 GCGTCCCTTCACTTTGAGCG 61.902 60.000 0.00 0.00 0.00 5.03
4340 6516 0.319555 CGTCCCTTCACTTTGAGCGA 60.320 55.000 0.00 0.00 0.00 4.93
4341 6517 1.872237 CGTCCCTTCACTTTGAGCGAA 60.872 52.381 0.00 0.00 0.00 4.70
4342 6518 2.218603 GTCCCTTCACTTTGAGCGAAA 58.781 47.619 0.00 0.00 0.00 3.46
4343 6519 2.814336 GTCCCTTCACTTTGAGCGAAAT 59.186 45.455 0.00 0.00 0.00 2.17
4344 6520 3.074412 TCCCTTCACTTTGAGCGAAATC 58.926 45.455 0.00 0.00 0.00 2.17
4345 6521 2.162408 CCCTTCACTTTGAGCGAAATCC 59.838 50.000 0.00 0.00 0.00 3.01
4346 6522 2.159653 CCTTCACTTTGAGCGAAATCCG 60.160 50.000 0.00 0.00 42.21 4.18
4347 6523 2.163818 TCACTTTGAGCGAAATCCGT 57.836 45.000 0.00 0.00 41.15 4.69
4348 6524 1.798223 TCACTTTGAGCGAAATCCGTG 59.202 47.619 0.00 0.00 41.15 4.94
4349 6525 1.798223 CACTTTGAGCGAAATCCGTGA 59.202 47.619 0.00 0.00 41.15 4.35
4350 6526 1.798813 ACTTTGAGCGAAATCCGTGAC 59.201 47.619 0.00 0.00 41.15 3.67
4351 6527 0.787787 TTTGAGCGAAATCCGTGACG 59.212 50.000 0.00 0.00 41.15 4.35
4361 6537 4.910585 CCGTGACGGGCTATGGGC 62.911 72.222 17.80 0.00 44.15 5.36
4376 6552 6.780457 GCTATGGGCCATGAATTATAATGT 57.220 37.500 29.14 0.40 34.27 2.71
4377 6553 6.799512 GCTATGGGCCATGAATTATAATGTC 58.200 40.000 29.14 0.49 34.27 3.06
4378 6554 6.377996 GCTATGGGCCATGAATTATAATGTCA 59.622 38.462 29.14 2.35 34.27 3.58
4379 6555 6.845758 ATGGGCCATGAATTATAATGTCAG 57.154 37.500 20.49 0.00 0.00 3.51
4380 6556 4.523943 TGGGCCATGAATTATAATGTCAGC 59.476 41.667 0.00 6.17 0.00 4.26
4381 6557 4.082026 GGGCCATGAATTATAATGTCAGCC 60.082 45.833 19.32 19.32 31.57 4.85
4382 6558 4.082026 GGCCATGAATTATAATGTCAGCCC 60.082 45.833 18.15 12.85 0.00 5.19
4383 6559 4.523943 GCCATGAATTATAATGTCAGCCCA 59.476 41.667 0.00 0.00 0.00 5.36
4384 6560 5.336213 GCCATGAATTATAATGTCAGCCCAG 60.336 44.000 0.00 0.00 0.00 4.45
4385 6561 5.184479 CCATGAATTATAATGTCAGCCCAGG 59.816 44.000 0.00 1.97 0.00 4.45
4386 6562 4.144297 TGAATTATAATGTCAGCCCAGGC 58.856 43.478 0.00 0.00 42.33 4.85
4387 6563 2.656947 TTATAATGTCAGCCCAGGCC 57.343 50.000 4.70 0.00 43.17 5.19
4388 6564 0.771127 TATAATGTCAGCCCAGGCCC 59.229 55.000 4.70 0.00 43.17 5.80
4389 6565 2.343475 ATAATGTCAGCCCAGGCCCG 62.343 60.000 4.70 0.00 43.17 6.13
4392 6568 4.115199 GTCAGCCCAGGCCCGAAT 62.115 66.667 4.70 0.00 43.17 3.34
4393 6569 4.113815 TCAGCCCAGGCCCGAATG 62.114 66.667 4.70 0.00 43.17 2.67
4412 6588 3.596362 GGTTTGGCCCTGCTATCTT 57.404 52.632 0.00 0.00 0.00 2.40
4413 6589 1.852633 GGTTTGGCCCTGCTATCTTT 58.147 50.000 0.00 0.00 0.00 2.52
4414 6590 3.012934 GGTTTGGCCCTGCTATCTTTA 57.987 47.619 0.00 0.00 0.00 1.85
4415 6591 3.361786 GGTTTGGCCCTGCTATCTTTAA 58.638 45.455 0.00 0.00 0.00 1.52
4416 6592 3.767131 GGTTTGGCCCTGCTATCTTTAAA 59.233 43.478 0.00 0.00 0.00 1.52
4417 6593 4.142160 GGTTTGGCCCTGCTATCTTTAAAG 60.142 45.833 9.04 9.04 0.00 1.85
4418 6594 2.654863 TGGCCCTGCTATCTTTAAAGC 58.345 47.619 10.51 0.00 39.25 3.51
4419 6595 2.242196 TGGCCCTGCTATCTTTAAAGCT 59.758 45.455 10.51 3.44 39.53 3.74
4420 6596 3.458118 TGGCCCTGCTATCTTTAAAGCTA 59.542 43.478 10.51 4.52 39.53 3.32
4421 6597 4.080015 TGGCCCTGCTATCTTTAAAGCTAA 60.080 41.667 10.51 0.00 39.53 3.09
4422 6598 5.073428 GGCCCTGCTATCTTTAAAGCTAAT 58.927 41.667 10.51 2.00 39.53 1.73
4423 6599 5.536538 GGCCCTGCTATCTTTAAAGCTAATT 59.463 40.000 10.51 0.00 39.53 1.40
4424 6600 6.442112 GCCCTGCTATCTTTAAAGCTAATTG 58.558 40.000 10.51 2.04 39.53 2.32
4425 6601 6.515696 GCCCTGCTATCTTTAAAGCTAATTGG 60.516 42.308 10.51 8.31 39.53 3.16
4426 6602 6.015940 CCCTGCTATCTTTAAAGCTAATTGGG 60.016 42.308 10.51 12.82 39.53 4.12
4427 6603 6.772716 CCTGCTATCTTTAAAGCTAATTGGGA 59.227 38.462 10.51 0.00 39.53 4.37
4428 6604 7.449704 CCTGCTATCTTTAAAGCTAATTGGGAT 59.550 37.037 10.51 0.00 39.53 3.85
4429 6605 8.766994 TGCTATCTTTAAAGCTAATTGGGATT 57.233 30.769 10.51 0.00 39.53 3.01
4430 6606 9.200817 TGCTATCTTTAAAGCTAATTGGGATTT 57.799 29.630 10.51 0.00 39.53 2.17
4431 6607 9.468532 GCTATCTTTAAAGCTAATTGGGATTTG 57.531 33.333 10.51 0.00 35.80 2.32
4435 6611 9.253832 TCTTTAAAGCTAATTGGGATTTGATCA 57.746 29.630 10.51 0.00 0.00 2.92
4436 6612 9.874205 CTTTAAAGCTAATTGGGATTTGATCAA 57.126 29.630 3.38 3.38 0.00 2.57
4437 6613 9.874205 TTTAAAGCTAATTGGGATTTGATCAAG 57.126 29.630 8.41 0.00 0.00 3.02
4720 6928 1.542915 TCTAAGTGTGGACGTACAGCC 59.457 52.381 0.00 0.00 0.00 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 9.736414 TCGGCTCTGTTAGACTAAGTATATATT 57.264 33.333 0.00 0.00 0.00 1.28
21 22 9.908747 ATCGGCTCTGTTAGACTAAGTATATAT 57.091 33.333 0.00 0.00 0.00 0.86
22 23 9.163899 CATCGGCTCTGTTAGACTAAGTATATA 57.836 37.037 0.00 0.00 0.00 0.86
23 24 7.666388 ACATCGGCTCTGTTAGACTAAGTATAT 59.334 37.037 0.00 0.00 0.00 0.86
24 25 6.996879 ACATCGGCTCTGTTAGACTAAGTATA 59.003 38.462 0.00 0.00 0.00 1.47
25 26 5.828859 ACATCGGCTCTGTTAGACTAAGTAT 59.171 40.000 0.00 0.00 0.00 2.12
26 27 5.191426 ACATCGGCTCTGTTAGACTAAGTA 58.809 41.667 0.00 0.00 0.00 2.24
27 28 4.017808 ACATCGGCTCTGTTAGACTAAGT 58.982 43.478 0.00 0.00 0.00 2.24
28 29 4.640789 ACATCGGCTCTGTTAGACTAAG 57.359 45.455 0.00 0.00 0.00 2.18
35 36 3.093814 TCACCTAACATCGGCTCTGTTA 58.906 45.455 8.04 8.04 37.89 2.41
36 37 1.899814 TCACCTAACATCGGCTCTGTT 59.100 47.619 6.75 6.75 39.93 3.16
37 38 1.557099 TCACCTAACATCGGCTCTGT 58.443 50.000 0.00 0.00 0.00 3.41
38 39 2.544685 CTTCACCTAACATCGGCTCTG 58.455 52.381 0.00 0.00 0.00 3.35
39 40 1.134670 GCTTCACCTAACATCGGCTCT 60.135 52.381 0.00 0.00 0.00 4.09
40 41 1.291132 GCTTCACCTAACATCGGCTC 58.709 55.000 0.00 0.00 0.00 4.70
41 42 0.107654 GGCTTCACCTAACATCGGCT 60.108 55.000 0.00 0.00 34.51 5.52
42 43 1.429148 CGGCTTCACCTAACATCGGC 61.429 60.000 0.00 0.00 35.61 5.54
75 76 1.948611 GCCGCCCTTGACAGTTTATCA 60.949 52.381 0.00 0.00 0.00 2.15
77 78 0.037590 TGCCGCCCTTGACAGTTTAT 59.962 50.000 0.00 0.00 0.00 1.40
109 110 1.899054 TAGCAGCTCGCCTATCGCT 60.899 57.895 0.00 0.81 44.04 4.93
113 114 1.051812 ATTGGTAGCAGCTCGCCTAT 58.948 50.000 14.85 10.85 44.04 2.57
117 118 2.828128 GCCATTGGTAGCAGCTCGC 61.828 63.158 0.00 0.00 42.91 5.03
145 146 4.503817 GCTCTATGCTCAGCCAATTGCG 62.504 54.545 0.00 0.00 41.42 4.85
186 187 5.659440 TTTTGATTAATCTGGTTCCAGCC 57.341 39.130 16.24 0.00 34.33 4.85
196 197 9.362151 TGTAGGTTCCAACTTTTTGATTAATCT 57.638 29.630 16.24 0.00 34.24 2.40
229 234 5.923204 AGCATTTATGGTCTCTAGTTCCAG 58.077 41.667 8.60 0.00 32.13 3.86
236 241 4.708177 GGCAGAAGCATTTATGGTCTCTA 58.292 43.478 0.00 0.00 44.61 2.43
245 251 2.658373 TACGACGGCAGAAGCATTTA 57.342 45.000 0.00 0.00 44.61 1.40
256 262 1.602191 CAGCAAAAACATACGACGGC 58.398 50.000 0.00 0.00 0.00 5.68
285 293 1.754621 TGTGCTCGCAAACCCCAAA 60.755 52.632 0.00 0.00 0.00 3.28
292 300 1.157257 ACGATGTGTGTGCTCGCAAA 61.157 50.000 3.18 0.00 35.89 3.68
438 448 1.436195 GCGCTCACCATCGCCAAATA 61.436 55.000 0.00 0.00 45.01 1.40
529 567 3.377172 CGTCTCTCCCAAAACAACAAAGT 59.623 43.478 0.00 0.00 0.00 2.66
530 568 3.625764 TCGTCTCTCCCAAAACAACAAAG 59.374 43.478 0.00 0.00 0.00 2.77
534 572 1.871676 GGTCGTCTCTCCCAAAACAAC 59.128 52.381 0.00 0.00 0.00 3.32
652 692 4.547859 CCAGTGATAGGTGCTGGC 57.452 61.111 0.00 0.00 42.54 4.85
655 695 1.806496 TATGGCCAGTGATAGGTGCT 58.194 50.000 13.05 0.00 0.00 4.40
698 738 4.286549 ACATCCATGATTTGCTCCCAAAAA 59.713 37.500 0.00 0.00 43.58 1.94
803 868 9.131791 TGTGAGGTTTTAATAGCTTTCTTTTCT 57.868 29.630 0.00 0.00 0.00 2.52
804 869 9.914131 ATGTGAGGTTTTAATAGCTTTCTTTTC 57.086 29.630 0.00 0.00 0.00 2.29
833 1209 9.920946 TGAGGTTTTAATAGCTTTCCATAGAAT 57.079 29.630 0.00 0.00 0.00 2.40
889 1297 4.122046 AGCTTTCTTTTCTTTTTGCGCAT 58.878 34.783 12.75 0.00 0.00 4.73
891 1299 4.740205 AGTAGCTTTCTTTTCTTTTTGCGC 59.260 37.500 0.00 0.00 0.00 6.09
932 1340 7.925993 TGTTTTTCTTCACATGAGTTAATCGT 58.074 30.769 0.00 0.00 0.00 3.73
1006 1414 5.600898 TCACGAGAGAATTATCCATTACCCA 59.399 40.000 0.00 0.00 0.00 4.51
1007 1415 6.097915 TCACGAGAGAATTATCCATTACCC 57.902 41.667 0.00 0.00 0.00 3.69
1038 1446 3.878667 GCGGATGGGAAGGAGGGG 61.879 72.222 0.00 0.00 0.00 4.79
1043 1451 4.883354 GCCAGGCGGATGGGAAGG 62.883 72.222 0.00 0.00 40.97 3.46
1137 1545 2.292587 GGAGGGGAAGAAGAGGAGAAGA 60.293 54.545 0.00 0.00 0.00 2.87
1261 1672 0.250513 CAGGACTGGTTGTAGAGGGC 59.749 60.000 0.00 0.00 0.00 5.19
1292 1703 1.322442 GAGGCAGTTCCAGCTTTTGT 58.678 50.000 0.00 0.00 37.29 2.83
1724 3247 6.581166 CCTGAGCGTGTATTTTAAGTTTTTCC 59.419 38.462 0.00 0.00 0.00 3.13
1733 3272 3.259876 AGGTGACCTGAGCGTGTATTTTA 59.740 43.478 1.77 0.00 29.57 1.52
1740 3279 1.107114 ATCTAGGTGACCTGAGCGTG 58.893 55.000 15.83 0.00 34.61 5.34
1746 3285 7.589958 AACTATGTCTTATCTAGGTGACCTG 57.410 40.000 15.83 4.51 34.61 4.00
1747 3286 9.884814 ATTAACTATGTCTTATCTAGGTGACCT 57.115 33.333 10.00 10.00 37.71 3.85
1775 3317 6.670695 TGTGGCTAGCTATCATCTAATGAA 57.329 37.500 15.72 0.00 43.50 2.57
1787 3330 4.963318 ATTCTATGCTTGTGGCTAGCTA 57.037 40.909 15.72 5.44 42.39 3.32
1793 3336 6.207417 ACACCATATAATTCTATGCTTGTGGC 59.793 38.462 16.09 0.00 42.22 5.01
1800 3343 7.989741 AGCTATGGACACCATATAATTCTATGC 59.010 37.037 10.34 7.54 44.33 3.14
1812 3355 4.019860 CCTATAAGCAGCTATGGACACCAT 60.020 45.833 8.35 8.35 46.99 3.55
1872 3419 9.220767 GGATCCTCCATTTTACATACATTCTAC 57.779 37.037 3.84 0.00 36.28 2.59
1873 3420 9.170890 AGGATCCTCCATTTTACATACATTCTA 57.829 33.333 9.02 0.00 39.61 2.10
1874 3421 8.050316 AGGATCCTCCATTTTACATACATTCT 57.950 34.615 9.02 0.00 39.61 2.40
1875 3422 8.571336 CAAGGATCCTCCATTTTACATACATTC 58.429 37.037 16.52 0.00 39.61 2.67
1876 3423 7.506938 CCAAGGATCCTCCATTTTACATACATT 59.493 37.037 16.52 0.00 39.61 2.71
1890 3439 3.181439 CCCTGATTTACCAAGGATCCTCC 60.181 52.174 16.52 0.00 36.58 4.30
1915 3464 4.804139 CCGACATCTCACATTACAGTAACC 59.196 45.833 0.00 0.00 0.00 2.85
1938 3487 2.420022 ACGCATTGTTTACTCATGCTCC 59.580 45.455 12.61 0.00 36.22 4.70
1939 3488 3.747099 ACGCATTGTTTACTCATGCTC 57.253 42.857 12.61 0.00 36.22 4.26
1953 3502 5.070446 TGAGAATATCCCAGAACTACGCATT 59.930 40.000 0.00 0.00 0.00 3.56
1956 3505 4.551388 CTGAGAATATCCCAGAACTACGC 58.449 47.826 0.00 0.00 0.00 4.42
1957 3506 4.827835 TCCTGAGAATATCCCAGAACTACG 59.172 45.833 0.00 0.00 0.00 3.51
1964 3516 7.039923 CCAAATCATTTCCTGAGAATATCCCAG 60.040 40.741 0.00 0.00 37.28 4.45
1984 3536 7.043565 AGTGAAAAATATGCATCACCCAAATC 58.956 34.615 0.19 0.00 42.39 2.17
1988 3540 4.402155 GGAGTGAAAAATATGCATCACCCA 59.598 41.667 0.19 0.00 42.39 4.51
2006 3558 5.699097 TTTATTTTGAAACGGAGGGAGTG 57.301 39.130 0.00 0.00 0.00 3.51
2009 3561 6.007703 AGTCATTTATTTTGAAACGGAGGGA 58.992 36.000 0.00 0.00 0.00 4.20
2011 3563 6.908825 TGAGTCATTTATTTTGAAACGGAGG 58.091 36.000 0.00 0.00 0.00 4.30
2014 3566 8.574196 AAGTTGAGTCATTTATTTTGAAACGG 57.426 30.769 0.00 0.00 0.00 4.44
2015 3567 9.833894 CAAAGTTGAGTCATTTATTTTGAAACG 57.166 29.630 5.72 0.00 0.00 3.60
2057 3767 7.444183 TCCGTTTCAAAATAGATGACTCAACTT 59.556 33.333 0.00 0.00 0.00 2.66
2059 3769 7.129109 TCCGTTTCAAAATAGATGACTCAAC 57.871 36.000 0.00 0.00 0.00 3.18
2060 3770 6.371548 CCTCCGTTTCAAAATAGATGACTCAA 59.628 38.462 0.00 0.00 0.00 3.02
2062 3772 5.294552 CCCTCCGTTTCAAAATAGATGACTC 59.705 44.000 0.00 0.00 0.00 3.36
2063 3773 5.045869 TCCCTCCGTTTCAAAATAGATGACT 60.046 40.000 0.00 0.00 0.00 3.41
2064 3774 5.183228 TCCCTCCGTTTCAAAATAGATGAC 58.817 41.667 0.00 0.00 0.00 3.06
2065 3775 5.045869 ACTCCCTCCGTTTCAAAATAGATGA 60.046 40.000 0.00 0.00 0.00 2.92
2066 3776 5.186198 ACTCCCTCCGTTTCAAAATAGATG 58.814 41.667 0.00 0.00 0.00 2.90
2067 3777 5.437191 ACTCCCTCCGTTTCAAAATAGAT 57.563 39.130 0.00 0.00 0.00 1.98
2069 3779 4.874396 GGTACTCCCTCCGTTTCAAAATAG 59.126 45.833 0.00 0.00 0.00 1.73
2070 3780 4.835678 GGTACTCCCTCCGTTTCAAAATA 58.164 43.478 0.00 0.00 0.00 1.40
2071 3781 3.682696 GGTACTCCCTCCGTTTCAAAAT 58.317 45.455 0.00 0.00 0.00 1.82
2085 3795 6.096001 TCGTCAATACTTTTAGAGGGTACTCC 59.904 42.308 0.00 0.00 45.11 3.85
2086 3796 7.093322 TCGTCAATACTTTTAGAGGGTACTC 57.907 40.000 0.00 0.00 44.31 2.59
2087 3797 6.662663 ACTCGTCAATACTTTTAGAGGGTACT 59.337 38.462 0.00 0.00 0.00 2.73
2088 3798 6.861144 ACTCGTCAATACTTTTAGAGGGTAC 58.139 40.000 0.00 0.00 0.00 3.34
2165 4045 2.614057 GTCCTTTGCCCACTAATGATCG 59.386 50.000 0.00 0.00 0.00 3.69
2173 4053 1.215423 AGTTTCAGTCCTTTGCCCACT 59.785 47.619 0.00 0.00 0.00 4.00
2198 4078 0.673644 AGAGCCGAACCACCATTTCG 60.674 55.000 0.00 0.00 44.40 3.46
2212 4092 3.340814 TTCCTGATTTCACAGAGAGCC 57.659 47.619 0.00 0.00 39.94 4.70
2254 4137 1.580845 AAAGCATGCAGAGCGTCACC 61.581 55.000 21.98 0.00 37.01 4.02
2263 4146 1.303799 ACCGCAGAGAAAGCATGCAG 61.304 55.000 21.98 1.45 39.97 4.41
2264 4147 0.890542 AACCGCAGAGAAAGCATGCA 60.891 50.000 21.98 0.00 39.97 3.96
2265 4148 0.455633 CAACCGCAGAGAAAGCATGC 60.456 55.000 10.51 10.51 36.60 4.06
2266 4149 1.129998 CTCAACCGCAGAGAAAGCATG 59.870 52.381 0.00 0.00 35.09 4.06
2267 4150 1.271054 ACTCAACCGCAGAGAAAGCAT 60.271 47.619 0.00 0.00 36.91 3.79
2268 4151 0.106708 ACTCAACCGCAGAGAAAGCA 59.893 50.000 0.00 0.00 36.91 3.91
2269 4152 1.727335 GTACTCAACCGCAGAGAAAGC 59.273 52.381 0.00 0.00 36.91 3.51
2270 4153 3.026630 TGTACTCAACCGCAGAGAAAG 57.973 47.619 0.00 0.00 36.91 2.62
2271 4154 3.462483 TTGTACTCAACCGCAGAGAAA 57.538 42.857 0.00 0.00 36.91 2.52
2272 4155 3.678056 ATTGTACTCAACCGCAGAGAA 57.322 42.857 0.00 0.00 36.33 2.87
2298 4191 2.849007 CGCTCAGCAGACAACACG 59.151 61.111 0.00 0.00 0.00 4.49
2315 4208 0.373024 GCGAGAATTCACTGCTCAGC 59.627 55.000 8.44 0.00 0.00 4.26
2316 4209 0.644331 CGCGAGAATTCACTGCTCAG 59.356 55.000 0.00 0.00 0.00 3.35
2317 4210 0.038251 ACGCGAGAATTCACTGCTCA 60.038 50.000 15.93 0.00 0.00 4.26
2318 4211 1.071605 AACGCGAGAATTCACTGCTC 58.928 50.000 15.93 0.00 0.00 4.26
2319 4212 2.363788 TAACGCGAGAATTCACTGCT 57.636 45.000 15.93 0.00 0.00 4.24
2320 4213 3.544244 GGAATAACGCGAGAATTCACTGC 60.544 47.826 15.93 7.32 38.13 4.40
2321 4214 3.865745 AGGAATAACGCGAGAATTCACTG 59.134 43.478 15.93 0.00 38.13 3.66
2332 4225 6.842081 AATAAAAACGAAAGGAATAACGCG 57.158 33.333 3.53 3.53 0.00 6.01
2341 4234 7.701809 TGCAACCTAAAATAAAAACGAAAGG 57.298 32.000 0.00 0.00 0.00 3.11
2378 4271 7.721842 TGTGGGTGTAGAACTCAAATCAATTAA 59.278 33.333 0.00 0.00 42.35 1.40
2380 4273 6.068010 TGTGGGTGTAGAACTCAAATCAATT 58.932 36.000 0.00 0.00 42.35 2.32
2381 4274 5.630121 TGTGGGTGTAGAACTCAAATCAAT 58.370 37.500 0.00 0.00 42.35 2.57
2384 4287 6.385649 TTTTGTGGGTGTAGAACTCAAATC 57.614 37.500 0.00 0.00 42.35 2.17
2385 4288 6.783708 TTTTTGTGGGTGTAGAACTCAAAT 57.216 33.333 0.00 0.00 42.35 2.32
2387 4290 7.057894 ACTATTTTTGTGGGTGTAGAACTCAA 58.942 34.615 0.00 0.00 42.35 3.02
2392 4295 9.280174 CTAGAAACTATTTTTGTGGGTGTAGAA 57.720 33.333 0.00 0.00 0.00 2.10
2420 4323 5.932303 TCTTGCGGATTATTATACTTCTGCC 59.068 40.000 10.72 0.00 39.26 4.85
2432 4335 7.122055 TGACAAAAAGGTATTCTTGCGGATTAT 59.878 33.333 0.00 0.00 35.55 1.28
2437 4340 4.497473 TGACAAAAAGGTATTCTTGCGG 57.503 40.909 0.00 0.00 35.55 5.69
2440 4343 9.329913 CGTAGAAATGACAAAAAGGTATTCTTG 57.670 33.333 0.00 0.00 35.55 3.02
2466 4370 7.491048 GGTAGATCTCAGTCTCTTCATCAAAAC 59.509 40.741 0.00 0.00 0.00 2.43
2479 4383 8.736244 GGATGTTTCTATAGGTAGATCTCAGTC 58.264 40.741 0.00 0.00 36.84 3.51
2604 4512 3.743521 AGTGTCTGCATCTTTAGCACAA 58.256 40.909 0.00 0.00 37.02 3.33
2606 4514 4.667668 CGAAAGTGTCTGCATCTTTAGCAC 60.668 45.833 0.00 0.00 37.02 4.40
2624 4534 7.827819 TTATACATCAGGAAAGTGACGAAAG 57.172 36.000 0.00 0.00 0.00 2.62
2830 4745 7.031372 GCCACCTTCGTATAATCGTATCATTA 58.969 38.462 0.00 0.00 0.00 1.90
2831 4746 5.867716 GCCACCTTCGTATAATCGTATCATT 59.132 40.000 0.00 0.00 0.00 2.57
2832 4747 5.047590 TGCCACCTTCGTATAATCGTATCAT 60.048 40.000 0.00 0.00 0.00 2.45
2833 4748 4.278919 TGCCACCTTCGTATAATCGTATCA 59.721 41.667 0.00 0.00 0.00 2.15
2949 4864 5.940192 AATGAGCACGTCATAAAACTTGA 57.060 34.783 0.00 0.00 45.89 3.02
3023 4938 7.862873 GGGAACACAATAATAAAAGCATAGAGC 59.137 37.037 0.00 0.00 46.19 4.09
3036 4951 7.363793 GCACATAAAAGAGGGGAACACAATAAT 60.364 37.037 0.00 0.00 0.00 1.28
3042 4957 2.161609 CGCACATAAAAGAGGGGAACAC 59.838 50.000 0.00 0.00 0.00 3.32
3044 4959 1.743394 CCGCACATAAAAGAGGGGAAC 59.257 52.381 0.00 0.00 34.83 3.62
3063 4978 4.402474 ACAAAATTTCACCCTATGCTAGCC 59.598 41.667 13.29 0.00 0.00 3.93
3095 5010 2.231478 TCTCAGTAGCCCTTGAACGAAG 59.769 50.000 0.00 0.00 0.00 3.79
3117 5032 7.011773 CGTTATCAAACAGAACTCATGAACAG 58.988 38.462 0.00 0.00 35.16 3.16
3160 5165 5.982356 TCCAAATGACTCCAACATAGAGAG 58.018 41.667 0.00 0.00 35.27 3.20
3185 5190 1.639298 CTAGGCACAAACGGCTCAGC 61.639 60.000 0.00 0.00 42.62 4.26
3259 5294 6.377146 ACACATCACCAGACACTTTTTAACTT 59.623 34.615 0.00 0.00 0.00 2.66
3295 5330 9.350357 CACATGATAAAGTAAACGTAGTACTGT 57.650 33.333 5.39 9.20 45.00 3.55
3296 5331 9.563898 TCACATGATAAAGTAAACGTAGTACTG 57.436 33.333 5.39 0.00 45.00 2.74
3342 5377 8.497745 ACCTGATAAAGTTAGACAATCCATGAT 58.502 33.333 0.00 0.00 0.00 2.45
3356 5401 2.374170 ACGAACCCCACCTGATAAAGTT 59.626 45.455 0.00 0.00 0.00 2.66
3358 5403 2.781681 ACGAACCCCACCTGATAAAG 57.218 50.000 0.00 0.00 0.00 1.85
3359 5404 5.954153 TTATACGAACCCCACCTGATAAA 57.046 39.130 0.00 0.00 0.00 1.40
3535 5580 0.031178 CAAAGTGCCTTGGTGACTGC 59.969 55.000 0.00 0.00 0.00 4.40
3544 5589 1.600916 GCCTCCGTCAAAGTGCCTT 60.601 57.895 0.00 0.00 0.00 4.35
3556 5601 1.595382 GTGATCCCATTCGCCTCCG 60.595 63.158 0.00 0.00 0.00 4.63
3604 5649 6.072112 TCAAAAAGTACCTCATGTTCTTGC 57.928 37.500 0.00 0.00 35.10 4.01
3621 5666 2.503356 TGAAAAGCTTGGCCCTCAAAAA 59.497 40.909 0.00 0.00 34.56 1.94
3622 5667 2.114616 TGAAAAGCTTGGCCCTCAAAA 58.885 42.857 0.00 0.00 34.56 2.44
3625 5670 1.203038 TCATGAAAAGCTTGGCCCTCA 60.203 47.619 0.00 0.00 0.00 3.86
3654 5699 9.670719 GGTCTAAGACTCAAAATTTTGAAGAAG 57.329 33.333 28.49 20.66 45.61 2.85
3658 5703 6.266786 GGGGGTCTAAGACTCAAAATTTTGAA 59.733 38.462 28.49 15.92 45.61 2.69
3686 5731 1.410224 GCACAGGATTTTAGGAGGGGG 60.410 57.143 0.00 0.00 0.00 5.40
3687 5732 1.284785 TGCACAGGATTTTAGGAGGGG 59.715 52.381 0.00 0.00 0.00 4.79
3691 5736 2.677902 CGAGCTGCACAGGATTTTAGGA 60.678 50.000 1.02 0.00 0.00 2.94
3787 5832 2.094700 GCAGGATGTCTGTGTCGACTAA 60.095 50.000 17.92 3.79 45.08 2.24
3798 5843 0.035630 GGTTGAGCAGCAGGATGTCT 60.036 55.000 0.00 0.00 39.31 3.41
3806 5851 0.321671 GTAGGTCAGGTTGAGCAGCA 59.678 55.000 10.46 0.00 46.52 4.41
3948 5993 1.069090 GATCCGTGCGGCCAAGATA 59.931 57.895 2.24 0.00 34.68 1.98
3999 6044 1.654440 GATCTTCGATGCGACGCGA 60.654 57.895 15.93 5.28 34.89 5.87
4006 6051 5.105063 TGATCATAATCCGATCTTCGATGC 58.895 41.667 0.00 0.00 43.74 3.91
4015 6060 5.333581 TGGTAGTCCTGATCATAATCCGAT 58.666 41.667 0.00 0.00 34.23 4.18
4035 6080 2.158475 ACCAACAGAACATCCACATGGT 60.158 45.455 0.00 0.00 35.20 3.55
4038 6083 3.073798 TGGTACCAACAGAACATCCACAT 59.926 43.478 13.60 0.00 0.00 3.21
4039 6084 2.439880 TGGTACCAACAGAACATCCACA 59.560 45.455 13.60 0.00 0.00 4.17
4075 6120 3.252458 GGTCATGTTGTTCCAACTACCAC 59.748 47.826 15.54 6.38 34.46 4.16
4096 6141 7.201911 CCTTAGCTTTAGGATAAACATTTGGGG 60.202 40.741 8.52 0.00 34.56 4.96
4107 6152 6.334774 TCTCTCCCTACCTTAGCTTTAGGATA 59.665 42.308 18.54 8.37 35.28 2.59
4136 6181 1.153168 CGCCCTCCGGTGAATGATT 60.153 57.895 4.76 0.00 42.83 2.57
4158 6203 7.696453 GGAACATCAATTGGTATAACAAAGTCG 59.304 37.037 7.41 0.00 33.48 4.18
4177 6269 7.581476 TCACGTTCAAAATAGAAAGGAACATC 58.419 34.615 0.00 0.00 38.14 3.06
4178 6270 7.504924 TCACGTTCAAAATAGAAAGGAACAT 57.495 32.000 0.00 0.00 38.14 2.71
4179 6271 6.928979 TCACGTTCAAAATAGAAAGGAACA 57.071 33.333 0.00 0.00 38.14 3.18
4265 6441 8.912988 TGAAAGGTGATGTAACTTTGAAGAAAT 58.087 29.630 0.00 0.00 34.82 2.17
4266 6442 8.287439 TGAAAGGTGATGTAACTTTGAAGAAA 57.713 30.769 0.00 0.00 34.82 2.52
4267 6443 7.468631 GCTGAAAGGTGATGTAACTTTGAAGAA 60.469 37.037 0.00 0.00 34.82 2.52
4268 6444 6.017109 GCTGAAAGGTGATGTAACTTTGAAGA 60.017 38.462 0.00 0.00 34.82 2.87
4269 6445 6.145535 GCTGAAAGGTGATGTAACTTTGAAG 58.854 40.000 0.00 0.00 34.82 3.02
4270 6446 5.277779 CGCTGAAAGGTGATGTAACTTTGAA 60.278 40.000 0.00 0.00 34.82 2.69
4271 6447 4.213270 CGCTGAAAGGTGATGTAACTTTGA 59.787 41.667 0.00 0.00 34.82 2.69
4272 6448 4.213270 TCGCTGAAAGGTGATGTAACTTTG 59.787 41.667 0.00 0.00 34.82 2.77
4273 6449 4.385825 TCGCTGAAAGGTGATGTAACTTT 58.614 39.130 0.00 0.00 37.16 2.66
4274 6450 4.002906 TCGCTGAAAGGTGATGTAACTT 57.997 40.909 0.00 0.00 0.00 2.66
4275 6451 3.678056 TCGCTGAAAGGTGATGTAACT 57.322 42.857 0.00 0.00 0.00 2.24
4276 6452 4.464112 GTTTCGCTGAAAGGTGATGTAAC 58.536 43.478 4.35 0.00 31.87 2.50
4277 6453 3.500680 GGTTTCGCTGAAAGGTGATGTAA 59.499 43.478 4.35 0.00 31.87 2.41
4278 6454 3.071479 GGTTTCGCTGAAAGGTGATGTA 58.929 45.455 4.35 0.00 31.87 2.29
4279 6455 1.880027 GGTTTCGCTGAAAGGTGATGT 59.120 47.619 4.35 0.00 31.87 3.06
4280 6456 2.095567 CAGGTTTCGCTGAAAGGTGATG 60.096 50.000 4.35 0.00 31.87 3.07
4281 6457 2.154462 CAGGTTTCGCTGAAAGGTGAT 58.846 47.619 4.35 0.00 31.87 3.06
4282 6458 1.134220 ACAGGTTTCGCTGAAAGGTGA 60.134 47.619 14.11 0.00 31.87 4.02
4283 6459 1.002468 CACAGGTTTCGCTGAAAGGTG 60.002 52.381 4.35 8.87 31.87 4.00
4284 6460 1.134220 TCACAGGTTTCGCTGAAAGGT 60.134 47.619 4.35 2.17 31.87 3.50
4285 6461 1.264288 GTCACAGGTTTCGCTGAAAGG 59.736 52.381 4.35 1.68 31.87 3.11
4286 6462 1.939934 TGTCACAGGTTTCGCTGAAAG 59.060 47.619 4.35 0.00 31.87 2.62
4287 6463 1.668751 GTGTCACAGGTTTCGCTGAAA 59.331 47.619 0.00 0.55 0.00 2.69
4288 6464 1.295792 GTGTCACAGGTTTCGCTGAA 58.704 50.000 0.00 0.00 0.00 3.02
4289 6465 0.874175 CGTGTCACAGGTTTCGCTGA 60.874 55.000 3.42 0.00 0.00 4.26
4290 6466 1.564622 CGTGTCACAGGTTTCGCTG 59.435 57.895 3.42 0.00 0.00 5.18
4291 6467 1.594293 CCGTGTCACAGGTTTCGCT 60.594 57.895 3.42 0.00 0.00 4.93
4292 6468 2.935955 CCGTGTCACAGGTTTCGC 59.064 61.111 3.42 0.00 0.00 4.70
4293 6469 0.319211 TAGCCGTGTCACAGGTTTCG 60.319 55.000 3.42 0.00 0.00 3.46
4294 6470 1.429463 CTAGCCGTGTCACAGGTTTC 58.571 55.000 3.42 0.00 0.00 2.78
4295 6471 0.602905 GCTAGCCGTGTCACAGGTTT 60.603 55.000 2.29 2.08 0.00 3.27
4296 6472 1.004918 GCTAGCCGTGTCACAGGTT 60.005 57.895 2.29 6.17 0.00 3.50
4297 6473 2.657237 GCTAGCCGTGTCACAGGT 59.343 61.111 2.29 0.00 0.00 4.00
4298 6474 2.125512 GGCTAGCCGTGTCACAGG 60.126 66.667 20.16 6.63 0.00 4.00
4299 6475 0.530744 TAAGGCTAGCCGTGTCACAG 59.469 55.000 29.70 0.00 41.95 3.66
4300 6476 1.134818 CATAAGGCTAGCCGTGTCACA 60.135 52.381 29.70 11.80 41.95 3.58
4301 6477 1.571919 CATAAGGCTAGCCGTGTCAC 58.428 55.000 29.70 4.60 41.95 3.67
4302 6478 0.179084 GCATAAGGCTAGCCGTGTCA 60.179 55.000 29.70 12.55 41.95 3.58
4303 6479 1.215655 CGCATAAGGCTAGCCGTGTC 61.216 60.000 29.70 20.50 41.67 3.67
4304 6480 1.227263 CGCATAAGGCTAGCCGTGT 60.227 57.895 29.70 21.81 41.67 4.49
4305 6481 1.215655 GACGCATAAGGCTAGCCGTG 61.216 60.000 29.70 26.44 41.67 4.94
4306 6482 1.067582 GACGCATAAGGCTAGCCGT 59.932 57.895 27.83 26.74 41.67 5.68
4307 6483 1.664965 GGACGCATAAGGCTAGCCG 60.665 63.158 27.83 16.86 41.67 5.52
4308 6484 1.301795 GGGACGCATAAGGCTAGCC 60.302 63.158 27.19 27.19 41.67 3.93
4309 6485 0.106894 AAGGGACGCATAAGGCTAGC 59.893 55.000 6.04 6.04 41.67 3.42
4310 6486 1.412710 TGAAGGGACGCATAAGGCTAG 59.587 52.381 0.00 0.00 41.67 3.42
4311 6487 1.138266 GTGAAGGGACGCATAAGGCTA 59.862 52.381 0.00 0.00 41.67 3.93
4312 6488 0.107654 GTGAAGGGACGCATAAGGCT 60.108 55.000 0.00 0.00 41.67 4.58
4313 6489 0.107654 AGTGAAGGGACGCATAAGGC 60.108 55.000 0.00 0.00 39.90 4.35
4314 6490 2.403252 AAGTGAAGGGACGCATAAGG 57.597 50.000 0.00 0.00 0.00 2.69
4315 6491 3.334691 TCAAAGTGAAGGGACGCATAAG 58.665 45.455 0.00 0.00 0.00 1.73
4316 6492 3.334691 CTCAAAGTGAAGGGACGCATAA 58.665 45.455 0.00 0.00 0.00 1.90
4317 6493 2.935238 GCTCAAAGTGAAGGGACGCATA 60.935 50.000 0.00 0.00 0.00 3.14
4318 6494 1.813513 CTCAAAGTGAAGGGACGCAT 58.186 50.000 0.00 0.00 0.00 4.73
4319 6495 0.884704 GCTCAAAGTGAAGGGACGCA 60.885 55.000 0.00 0.00 0.00 5.24
4320 6496 1.869690 GCTCAAAGTGAAGGGACGC 59.130 57.895 0.00 0.00 0.00 5.19
4321 6497 0.319555 TCGCTCAAAGTGAAGGGACG 60.320 55.000 0.00 0.00 30.79 4.79
4322 6498 1.878953 TTCGCTCAAAGTGAAGGGAC 58.121 50.000 0.00 0.00 39.55 4.46
4323 6499 2.631160 TTTCGCTCAAAGTGAAGGGA 57.369 45.000 3.48 0.00 44.43 4.20
4324 6500 2.162408 GGATTTCGCTCAAAGTGAAGGG 59.838 50.000 3.48 0.00 44.43 3.95
4325 6501 2.159653 CGGATTTCGCTCAAAGTGAAGG 60.160 50.000 3.48 0.00 44.43 3.46
4326 6502 2.480419 ACGGATTTCGCTCAAAGTGAAG 59.520 45.455 3.48 0.00 44.43 3.02
4327 6503 2.223144 CACGGATTTCGCTCAAAGTGAA 59.777 45.455 0.00 0.00 42.37 3.18
4328 6504 1.798223 CACGGATTTCGCTCAAAGTGA 59.202 47.619 0.00 0.00 43.89 3.41
4329 6505 1.798223 TCACGGATTTCGCTCAAAGTG 59.202 47.619 0.00 0.00 43.89 3.16
4330 6506 1.798813 GTCACGGATTTCGCTCAAAGT 59.201 47.619 0.00 0.00 43.89 2.66
4331 6507 1.201812 CGTCACGGATTTCGCTCAAAG 60.202 52.381 0.00 0.00 43.89 2.77
4332 6508 0.787787 CGTCACGGATTTCGCTCAAA 59.212 50.000 0.00 0.00 43.89 2.69
4333 6509 2.441023 CGTCACGGATTTCGCTCAA 58.559 52.632 0.00 0.00 43.89 3.02
4334 6510 4.162640 CGTCACGGATTTCGCTCA 57.837 55.556 0.00 0.00 43.89 4.26
4353 6529 6.377996 TGACATTATAATTCATGGCCCATAGC 59.622 38.462 0.00 0.00 42.60 2.97
4354 6530 7.415989 GCTGACATTATAATTCATGGCCCATAG 60.416 40.741 0.00 0.00 0.00 2.23
4355 6531 6.377996 GCTGACATTATAATTCATGGCCCATA 59.622 38.462 0.00 0.00 0.00 2.74
4356 6532 5.186409 GCTGACATTATAATTCATGGCCCAT 59.814 40.000 0.00 0.00 0.00 4.00
4357 6533 4.523943 GCTGACATTATAATTCATGGCCCA 59.476 41.667 0.00 0.00 0.00 5.36
4358 6534 4.082026 GGCTGACATTATAATTCATGGCCC 60.082 45.833 18.15 11.00 28.76 5.80
4359 6535 4.082026 GGGCTGACATTATAATTCATGGCC 60.082 45.833 19.32 19.32 32.42 5.36
4360 6536 4.523943 TGGGCTGACATTATAATTCATGGC 59.476 41.667 0.00 9.02 0.00 4.40
4361 6537 5.184479 CCTGGGCTGACATTATAATTCATGG 59.816 44.000 0.00 0.00 0.00 3.66
4362 6538 5.336213 GCCTGGGCTGACATTATAATTCATG 60.336 44.000 4.12 0.00 38.26 3.07
4363 6539 4.768968 GCCTGGGCTGACATTATAATTCAT 59.231 41.667 4.12 0.00 38.26 2.57
4364 6540 4.144297 GCCTGGGCTGACATTATAATTCA 58.856 43.478 4.12 3.28 38.26 2.57
4365 6541 3.507622 GGCCTGGGCTGACATTATAATTC 59.492 47.826 13.80 0.00 41.60 2.17
4366 6542 3.500343 GGCCTGGGCTGACATTATAATT 58.500 45.455 13.80 0.00 41.60 1.40
4367 6543 2.225117 GGGCCTGGGCTGACATTATAAT 60.225 50.000 20.47 0.00 41.60 1.28
4368 6544 1.144913 GGGCCTGGGCTGACATTATAA 59.855 52.381 20.47 0.00 41.60 0.98
4369 6545 0.771127 GGGCCTGGGCTGACATTATA 59.229 55.000 20.47 0.00 41.60 0.98
4370 6546 1.538666 GGGCCTGGGCTGACATTAT 59.461 57.895 20.47 0.00 41.60 1.28
4371 6547 3.006677 GGGCCTGGGCTGACATTA 58.993 61.111 20.47 0.00 41.60 1.90
4372 6548 4.431131 CGGGCCTGGGCTGACATT 62.431 66.667 23.80 0.00 41.60 2.71
4375 6551 4.115199 ATTCGGGCCTGGGCTGAC 62.115 66.667 29.37 8.07 43.12 3.51
4376 6552 4.113815 CATTCGGGCCTGGGCTGA 62.114 66.667 26.31 26.31 41.74 4.26
4394 6570 1.852633 AAAGATAGCAGGGCCAAACC 58.147 50.000 6.18 0.00 37.93 3.27
4395 6571 4.678044 GCTTTAAAGATAGCAGGGCCAAAC 60.678 45.833 19.48 0.00 37.35 2.93
4396 6572 3.447229 GCTTTAAAGATAGCAGGGCCAAA 59.553 43.478 19.48 0.00 37.35 3.28
4397 6573 3.023832 GCTTTAAAGATAGCAGGGCCAA 58.976 45.455 19.48 0.00 37.35 4.52
4398 6574 2.242196 AGCTTTAAAGATAGCAGGGCCA 59.758 45.455 19.48 0.00 39.85 5.36
4399 6575 2.937519 AGCTTTAAAGATAGCAGGGCC 58.062 47.619 19.48 0.00 39.85 5.80
4400 6576 6.442112 CAATTAGCTTTAAAGATAGCAGGGC 58.558 40.000 19.48 0.81 39.85 5.19
4401 6577 6.015940 CCCAATTAGCTTTAAAGATAGCAGGG 60.016 42.308 19.48 20.72 39.85 4.45
4402 6578 6.772716 TCCCAATTAGCTTTAAAGATAGCAGG 59.227 38.462 19.48 16.65 39.85 4.85
4403 6579 7.807977 TCCCAATTAGCTTTAAAGATAGCAG 57.192 36.000 19.48 9.60 39.85 4.24
4404 6580 8.766994 AATCCCAATTAGCTTTAAAGATAGCA 57.233 30.769 19.48 3.41 39.85 3.49
4405 6581 9.468532 CAAATCCCAATTAGCTTTAAAGATAGC 57.531 33.333 19.48 3.97 37.66 2.97
4409 6585 9.253832 TGATCAAATCCCAATTAGCTTTAAAGA 57.746 29.630 19.48 0.00 0.00 2.52
4410 6586 9.874205 TTGATCAAATCCCAATTAGCTTTAAAG 57.126 29.630 11.02 11.02 0.00 1.85
4411 6587 9.874205 CTTGATCAAATCCCAATTAGCTTTAAA 57.126 29.630 9.88 0.00 0.00 1.52
4412 6588 9.253832 TCTTGATCAAATCCCAATTAGCTTTAA 57.746 29.630 9.88 0.00 0.00 1.52
4413 6589 8.821686 TCTTGATCAAATCCCAATTAGCTTTA 57.178 30.769 9.88 0.00 0.00 1.85
4414 6590 7.722949 TCTTGATCAAATCCCAATTAGCTTT 57.277 32.000 9.88 0.00 0.00 3.51
4415 6591 7.398332 AGTTCTTGATCAAATCCCAATTAGCTT 59.602 33.333 9.88 0.00 0.00 3.74
4416 6592 6.894103 AGTTCTTGATCAAATCCCAATTAGCT 59.106 34.615 9.88 0.00 0.00 3.32
4417 6593 7.105241 AGTTCTTGATCAAATCCCAATTAGC 57.895 36.000 9.88 0.00 0.00 3.09
4418 6594 9.401058 ACTAGTTCTTGATCAAATCCCAATTAG 57.599 33.333 9.88 9.57 0.00 1.73
4420 6596 9.753674 TTACTAGTTCTTGATCAAATCCCAATT 57.246 29.630 9.88 0.00 0.00 2.32
4421 6597 9.401058 CTTACTAGTTCTTGATCAAATCCCAAT 57.599 33.333 9.88 0.00 0.00 3.16
4422 6598 7.336931 GCTTACTAGTTCTTGATCAAATCCCAA 59.663 37.037 9.88 0.00 0.00 4.12
4423 6599 6.823689 GCTTACTAGTTCTTGATCAAATCCCA 59.176 38.462 9.88 0.00 0.00 4.37
4424 6600 7.051000 AGCTTACTAGTTCTTGATCAAATCCC 58.949 38.462 9.88 0.00 0.00 3.85
4425 6601 8.394121 CAAGCTTACTAGTTCTTGATCAAATCC 58.606 37.037 19.22 0.00 38.45 3.01
4426 6602 7.907563 GCAAGCTTACTAGTTCTTGATCAAATC 59.092 37.037 24.27 3.16 38.45 2.17
4427 6603 7.391554 TGCAAGCTTACTAGTTCTTGATCAAAT 59.608 33.333 24.27 0.00 38.45 2.32
4428 6604 6.710295 TGCAAGCTTACTAGTTCTTGATCAAA 59.290 34.615 24.27 0.00 38.45 2.69
4429 6605 6.147821 GTGCAAGCTTACTAGTTCTTGATCAA 59.852 38.462 24.27 8.12 38.45 2.57
4430 6606 5.639506 GTGCAAGCTTACTAGTTCTTGATCA 59.360 40.000 24.27 15.78 38.45 2.92
4431 6607 5.220303 CGTGCAAGCTTACTAGTTCTTGATC 60.220 44.000 24.27 17.47 38.45 2.92
4432 6608 4.627467 CGTGCAAGCTTACTAGTTCTTGAT 59.373 41.667 24.27 3.70 38.45 2.57
4433 6609 3.987868 CGTGCAAGCTTACTAGTTCTTGA 59.012 43.478 24.27 13.37 38.45 3.02
4434 6610 3.741344 ACGTGCAAGCTTACTAGTTCTTG 59.259 43.478 19.46 19.46 39.00 3.02
4435 6611 3.741344 CACGTGCAAGCTTACTAGTTCTT 59.259 43.478 0.82 0.00 0.00 2.52
4436 6612 3.318017 CACGTGCAAGCTTACTAGTTCT 58.682 45.455 0.82 0.00 0.00 3.01
4437 6613 2.159827 GCACGTGCAAGCTTACTAGTTC 60.160 50.000 34.52 0.00 41.59 3.01
4542 6723 6.397831 TTTTCCATGTCGATTAGTTGTACG 57.602 37.500 0.00 0.00 0.00 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.