Multiple sequence alignment - TraesCS6B01G065400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G065400 chr6B 100.000 5759 0 0 1 5759 43280803 43286561 0.000000e+00 10635.0
1 TraesCS6B01G065400 chr6B 89.396 2386 219 21 749 3116 43498488 43500857 0.000000e+00 2974.0
2 TraesCS6B01G065400 chr6B 87.598 2435 276 22 713 3130 44100036 44102461 0.000000e+00 2800.0
3 TraesCS6B01G065400 chr6B 89.397 2056 199 13 712 2749 43348173 43350227 0.000000e+00 2571.0
4 TraesCS6B01G065400 chr6B 86.451 1454 168 21 3412 4845 43350784 43352228 0.000000e+00 1567.0
5 TraesCS6B01G065400 chr6B 84.899 1384 154 28 3412 4779 43501057 43502401 0.000000e+00 1347.0
6 TraesCS6B01G065400 chr6B 84.020 1189 175 14 3477 4652 44102630 44103816 0.000000e+00 1129.0
7 TraesCS6B01G065400 chr6B 97.521 121 3 0 3181 3301 35636973 35636853 2.100000e-49 207.0
8 TraesCS6B01G065400 chr6B 76.965 369 49 21 4914 5266 43502644 43502992 1.650000e-40 178.0
9 TraesCS6B01G065400 chr6B 77.739 283 43 14 380 655 43347817 43348086 7.730000e-34 156.0
10 TraesCS6B01G065400 chr6B 86.331 139 14 3 517 655 43498187 43498320 4.650000e-31 147.0
11 TraesCS6B01G065400 chr6B 84.298 121 19 0 72 192 43497877 43497997 1.010000e-22 119.0
12 TraesCS6B01G065400 chr6B 91.892 74 5 1 5181 5253 43801254 43801327 1.020000e-17 102.0
13 TraesCS6B01G065400 chr6B 86.885 61 7 1 5613 5672 712995392 712995452 3.720000e-07 67.6
14 TraesCS6B01G065400 chrUn 92.389 3140 158 39 115 3182 94046652 94049782 0.000000e+00 4399.0
15 TraesCS6B01G065400 chrUn 88.994 2426 235 20 712 3116 94220677 94223091 0.000000e+00 2972.0
16 TraesCS6B01G065400 chrUn 88.776 2459 227 25 712 3125 94179311 94181765 0.000000e+00 2966.0
17 TraesCS6B01G065400 chrUn 88.319 2397 248 24 713 3088 94817895 94820280 0.000000e+00 2846.0
18 TraesCS6B01G065400 chrUn 90.579 1433 90 29 4200 5600 94050630 94052049 0.000000e+00 1857.0
19 TraesCS6B01G065400 chrUn 86.855 1415 166 14 3441 4845 94182057 94183461 0.000000e+00 1565.0
20 TraesCS6B01G065400 chrUn 94.710 775 40 1 3399 4172 94049857 94050631 0.000000e+00 1203.0
21 TraesCS6B01G065400 chrUn 86.878 663 67 12 3458 4117 94223347 94223992 0.000000e+00 725.0
22 TraesCS6B01G065400 chrUn 88.676 521 58 1 4257 4777 94224273 94224792 8.140000e-178 634.0
23 TraesCS6B01G065400 chrUn 82.991 341 31 9 1 322 94046100 94046432 3.400000e-72 283.0
24 TraesCS6B01G065400 chrUn 76.667 540 81 28 4909 5409 94183586 94184119 2.060000e-64 257.0
25 TraesCS6B01G065400 chrUn 86.364 176 15 6 475 647 94178499 94178668 3.540000e-42 183.0
26 TraesCS6B01G065400 chrUn 76.276 333 49 16 4931 5253 94243195 94243507 3.590000e-32 150.0
27 TraesCS6B01G065400 chrUn 96.552 87 3 0 3298 3384 94049784 94049870 1.670000e-30 145.0
28 TraesCS6B01G065400 chrUn 81.250 128 16 1 73 192 94220115 94220242 4.750000e-16 97.1
29 TraesCS6B01G065400 chrUn 89.062 64 4 1 5699 5759 94052075 94052138 6.190000e-10 76.8
30 TraesCS6B01G065400 chr6A 95.319 2521 97 13 622 3131 24838406 24840916 0.000000e+00 3982.0
31 TraesCS6B01G065400 chr6A 89.140 2431 223 29 712 3116 25017692 25020107 0.000000e+00 2988.0
32 TraesCS6B01G065400 chr6A 89.454 2181 219 9 917 3088 25631483 25633661 0.000000e+00 2743.0
33 TraesCS6B01G065400 chr6A 89.859 2051 189 14 712 2749 24853500 24855544 0.000000e+00 2617.0
34 TraesCS6B01G065400 chr6A 95.776 1444 59 2 3399 4841 24841041 24842483 0.000000e+00 2327.0
35 TraesCS6B01G065400 chr6A 86.992 1453 162 19 3412 4845 24856097 24857541 0.000000e+00 1611.0
36 TraesCS6B01G065400 chr6A 85.445 1326 144 13 3464 4779 25020411 25021697 0.000000e+00 1334.0
37 TraesCS6B01G065400 chr6A 89.384 763 56 19 4846 5600 24842525 24843270 0.000000e+00 937.0
38 TraesCS6B01G065400 chr6A 85.902 305 20 7 325 606 24837538 24837842 2.610000e-78 303.0
39 TraesCS6B01G065400 chr6A 85.648 216 23 2 1 215 24837092 24837300 2.700000e-53 220.0
40 TraesCS6B01G065400 chr6A 90.226 133 10 2 476 606 24852690 24852821 2.760000e-38 171.0
41 TraesCS6B01G065400 chr6A 87.770 139 12 3 517 655 24853280 24853413 2.150000e-34 158.0
42 TraesCS6B01G065400 chr6A 96.629 89 3 0 3296 3384 24840966 24841054 1.290000e-31 148.0
43 TraesCS6B01G065400 chr6A 84.444 135 21 0 73 207 25017141 25017275 3.620000e-27 134.0
44 TraesCS6B01G065400 chr6A 90.476 63 3 1 5699 5758 24843296 24843358 4.780000e-11 80.5
45 TraesCS6B01G065400 chr7B 99.138 116 1 0 3184 3299 188973230 188973115 5.850000e-50 209.0
46 TraesCS6B01G065400 chr7B 97.436 117 3 0 3181 3297 644912865 644912749 3.520000e-47 200.0
47 TraesCS6B01G065400 chr7B 94.400 125 7 0 3178 3302 108247471 108247595 5.890000e-45 193.0
48 TraesCS6B01G065400 chr3B 98.305 118 2 0 3181 3298 489684895 489685012 2.100000e-49 207.0
49 TraesCS6B01G065400 chr2B 97.436 117 3 0 3181 3297 670298049 670297933 3.520000e-47 200.0
50 TraesCS6B01G065400 chr5B 97.436 117 2 1 3181 3297 547368736 547368621 1.270000e-46 198.0
51 TraesCS6B01G065400 chr5B 96.639 119 4 0 3180 3298 557282639 557282521 1.270000e-46 198.0
52 TraesCS6B01G065400 chr4B 95.161 124 4 2 3181 3304 15260509 15260630 1.640000e-45 195.0
53 TraesCS6B01G065400 chr6D 88.525 61 6 1 5613 5672 450652092 450652152 8.000000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G065400 chr6B 43280803 43286561 5758 False 10635.000000 10635 100.000000 1 5759 1 chr6B.!!$F1 5758
1 TraesCS6B01G065400 chr6B 44100036 44103816 3780 False 1964.500000 2800 85.809000 713 4652 2 chr6B.!!$F6 3939
2 TraesCS6B01G065400 chr6B 43347817 43352228 4411 False 1431.333333 2571 84.529000 380 4845 3 chr6B.!!$F4 4465
3 TraesCS6B01G065400 chr6B 43497877 43502992 5115 False 953.000000 2974 84.377800 72 5266 5 chr6B.!!$F5 5194
4 TraesCS6B01G065400 chrUn 94817895 94820280 2385 False 2846.000000 2846 88.319000 713 3088 1 chrUn.!!$F2 2375
5 TraesCS6B01G065400 chrUn 94046100 94052138 6038 False 1327.300000 4399 91.047167 1 5759 6 chrUn.!!$F3 5758
6 TraesCS6B01G065400 chrUn 94178499 94184119 5620 False 1242.750000 2966 84.665500 475 5409 4 chrUn.!!$F4 4934
7 TraesCS6B01G065400 chrUn 94220115 94224792 4677 False 1107.025000 2972 86.449500 73 4777 4 chrUn.!!$F5 4704
8 TraesCS6B01G065400 chr6A 25631483 25633661 2178 False 2743.000000 2743 89.454000 917 3088 1 chr6A.!!$F1 2171
9 TraesCS6B01G065400 chr6A 25017141 25021697 4556 False 1485.333333 2988 86.343000 73 4779 3 chr6A.!!$F4 4706
10 TraesCS6B01G065400 chr6A 24837092 24843358 6266 False 1142.500000 3982 91.304857 1 5758 7 chr6A.!!$F2 5757
11 TraesCS6B01G065400 chr6A 24852690 24857541 4851 False 1139.250000 2617 88.711750 476 4845 4 chr6A.!!$F3 4369

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
323 380 0.037790 GTCGCAGCTTCTCTCTGGTT 60.038 55.000 0.00 0.00 32.41 3.67 F
378 557 0.038166 TTCCCAGGCATTGTGTCCTC 59.962 55.000 0.00 0.00 0.00 3.71 F
380 559 0.038744 CCCAGGCATTGTGTCCTCTT 59.961 55.000 0.00 0.00 0.00 2.85 F
383 562 0.111061 AGGCATTGTGTCCTCTTGCA 59.889 50.000 0.00 0.00 35.04 4.08 F
671 2352 0.185901 AATGGGGCGCATACCAGAAT 59.814 50.000 17.99 8.71 40.67 2.40 F
974 2751 2.044650 ATGCAGACAAGCGGCCAT 60.045 55.556 2.24 0.00 36.83 4.40 F
1524 3310 2.229784 CCCATTCTTTGTCAGAACTGGC 59.770 50.000 0.00 0.00 44.70 4.85 F
3202 5088 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1436 3222 1.005340 GACTCGGAGCTCATTTGCTG 58.995 55.000 17.19 0.59 44.17 4.41 R
1746 3532 2.492019 TGATAACGCGAGACTCCATG 57.508 50.000 15.93 0.00 0.00 3.66 R
2143 3935 2.503895 AGAGTTTCCCCAGCTTCATG 57.496 50.000 0.00 0.00 0.00 3.07 R
2217 4009 3.821033 CCCCAGTGAAGTTTACCTTTCTG 59.179 47.826 0.00 0.00 36.28 3.02 R
2472 4264 2.496070 GGCATTAGAAGGGAAAACCCAC 59.504 50.000 8.05 1.86 41.63 4.61 R
2751 4575 0.252696 AGATGCCCCTGGTCAGTACA 60.253 55.000 0.00 0.00 0.00 2.90 R
3461 5374 1.404748 CATTTGGCGATACATGTGGCA 59.595 47.619 9.11 7.77 36.29 4.92 R
4790 6922 0.179018 AGTTGACCACCTGACTTGCC 60.179 55.000 0.00 0.00 0.00 4.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 1.153529 CGGTAATGGCGGCTGTGTA 60.154 57.895 11.43 0.00 0.00 2.90
41 42 1.151777 CGGTAATGGCGGCTGTGTAG 61.152 60.000 11.43 0.00 0.00 2.74
42 43 0.107848 GGTAATGGCGGCTGTGTAGT 60.108 55.000 11.43 0.00 0.00 2.73
43 44 1.006832 GTAATGGCGGCTGTGTAGTG 58.993 55.000 11.43 0.00 0.00 2.74
44 45 0.611200 TAATGGCGGCTGTGTAGTGT 59.389 50.000 11.43 0.00 0.00 3.55
45 46 0.955428 AATGGCGGCTGTGTAGTGTG 60.955 55.000 11.43 0.00 0.00 3.82
46 47 2.030562 GGCGGCTGTGTAGTGTGT 59.969 61.111 0.00 0.00 0.00 3.72
63 64 2.281692 TGCTGATGTTGCCGCTGT 60.282 55.556 0.00 0.00 0.00 4.40
66 67 2.281692 TGATGTTGCCGCTGTGCT 60.282 55.556 0.00 0.00 0.00 4.40
67 68 2.177531 GATGTTGCCGCTGTGCTG 59.822 61.111 0.00 0.00 0.00 4.41
69 70 1.651240 GATGTTGCCGCTGTGCTGAT 61.651 55.000 0.00 0.00 0.00 2.90
70 71 0.392863 ATGTTGCCGCTGTGCTGATA 60.393 50.000 0.00 0.00 0.00 2.15
141 160 2.126031 GCTGGTCTCGTTCCGGTC 60.126 66.667 0.00 0.00 34.14 4.79
144 163 0.679002 CTGGTCTCGTTCCGGTCCTA 60.679 60.000 0.00 0.00 0.00 2.94
145 164 0.251297 TGGTCTCGTTCCGGTCCTAA 60.251 55.000 0.00 0.00 0.00 2.69
148 167 0.883833 TCTCGTTCCGGTCCTAACAC 59.116 55.000 0.00 0.00 0.00 3.32
155 174 1.619827 TCCGGTCCTAACACGTTTCAT 59.380 47.619 0.00 0.00 0.00 2.57
233 277 1.749063 TGTCGATGCATACTTCTCCGT 59.251 47.619 0.00 0.00 0.00 4.69
295 352 1.160137 CTGGCTGTAGCTTGGTTGTC 58.840 55.000 3.63 0.00 41.70 3.18
296 353 0.602638 TGGCTGTAGCTTGGTTGTCG 60.603 55.000 3.63 0.00 41.70 4.35
301 358 3.062234 GCTGTAGCTTGGTTGTCGTAATC 59.938 47.826 0.00 0.00 38.21 1.75
307 364 2.357327 TGGTTGTCGTAATCCTGTCG 57.643 50.000 0.00 0.00 0.00 4.35
308 365 0.997196 GGTTGTCGTAATCCTGTCGC 59.003 55.000 0.00 0.00 0.00 5.19
309 366 1.670674 GGTTGTCGTAATCCTGTCGCA 60.671 52.381 0.00 0.00 0.00 5.10
311 368 0.457853 TGTCGTAATCCTGTCGCAGC 60.458 55.000 1.84 0.00 0.00 5.25
312 369 0.179134 GTCGTAATCCTGTCGCAGCT 60.179 55.000 1.84 0.00 0.00 4.24
314 371 0.924090 CGTAATCCTGTCGCAGCTTC 59.076 55.000 1.84 0.00 0.00 3.86
315 372 1.469940 CGTAATCCTGTCGCAGCTTCT 60.470 52.381 1.84 0.00 0.00 2.85
316 373 2.197577 GTAATCCTGTCGCAGCTTCTC 58.802 52.381 1.84 0.00 0.00 2.87
317 374 0.901124 AATCCTGTCGCAGCTTCTCT 59.099 50.000 1.84 0.00 0.00 3.10
318 375 0.459489 ATCCTGTCGCAGCTTCTCTC 59.541 55.000 1.84 0.00 0.00 3.20
319 376 0.610509 TCCTGTCGCAGCTTCTCTCT 60.611 55.000 1.84 0.00 0.00 3.10
320 377 0.458197 CCTGTCGCAGCTTCTCTCTG 60.458 60.000 1.84 0.00 34.79 3.35
323 380 0.037790 GTCGCAGCTTCTCTCTGGTT 60.038 55.000 0.00 0.00 32.41 3.67
363 542 0.676736 TTTGGTTGATTGCCGTTCCC 59.323 50.000 0.00 0.00 0.00 3.97
364 543 0.468214 TTGGTTGATTGCCGTTCCCA 60.468 50.000 0.00 0.00 0.00 4.37
365 544 0.893270 TGGTTGATTGCCGTTCCCAG 60.893 55.000 0.00 0.00 0.00 4.45
366 545 1.595093 GGTTGATTGCCGTTCCCAGG 61.595 60.000 0.00 0.00 0.00 4.45
373 552 3.277133 CCGTTCCCAGGCATTGTG 58.723 61.111 0.00 0.00 0.00 3.33
374 553 1.603455 CCGTTCCCAGGCATTGTGT 60.603 57.895 0.00 0.00 0.00 3.72
375 554 1.586154 CCGTTCCCAGGCATTGTGTC 61.586 60.000 0.00 0.00 0.00 3.67
376 555 1.586154 CGTTCCCAGGCATTGTGTCC 61.586 60.000 0.00 0.00 0.00 4.02
377 556 0.251341 GTTCCCAGGCATTGTGTCCT 60.251 55.000 0.00 0.00 0.00 3.85
378 557 0.038166 TTCCCAGGCATTGTGTCCTC 59.962 55.000 0.00 0.00 0.00 3.71
379 558 0.842030 TCCCAGGCATTGTGTCCTCT 60.842 55.000 0.00 0.00 0.00 3.69
380 559 0.038744 CCCAGGCATTGTGTCCTCTT 59.961 55.000 0.00 0.00 0.00 2.85
381 560 1.171308 CCAGGCATTGTGTCCTCTTG 58.829 55.000 0.00 0.00 0.00 3.02
382 561 0.524862 CAGGCATTGTGTCCTCTTGC 59.475 55.000 0.00 0.00 0.00 4.01
383 562 0.111061 AGGCATTGTGTCCTCTTGCA 59.889 50.000 0.00 0.00 35.04 4.08
384 563 0.524862 GGCATTGTGTCCTCTTGCAG 59.475 55.000 0.00 0.00 35.04 4.41
385 564 0.524862 GCATTGTGTCCTCTTGCAGG 59.475 55.000 0.00 0.00 45.15 4.85
398 577 2.679716 GCAGGAAGCACCCCATCT 59.320 61.111 0.00 0.00 44.79 2.90
399 578 1.000396 GCAGGAAGCACCCCATCTT 60.000 57.895 0.00 0.00 44.79 2.40
400 579 0.255890 GCAGGAAGCACCCCATCTTA 59.744 55.000 0.00 0.00 44.79 2.10
401 580 1.340991 GCAGGAAGCACCCCATCTTAA 60.341 52.381 0.00 0.00 44.79 1.85
402 581 2.648059 CAGGAAGCACCCCATCTTAAG 58.352 52.381 0.00 0.00 40.05 1.85
403 582 1.064389 AGGAAGCACCCCATCTTAAGC 60.064 52.381 0.00 0.00 40.05 3.09
404 583 1.340991 GGAAGCACCCCATCTTAAGCA 60.341 52.381 0.00 0.00 0.00 3.91
405 584 2.659428 GAAGCACCCCATCTTAAGCAT 58.341 47.619 0.00 0.00 0.00 3.79
406 585 2.355010 AGCACCCCATCTTAAGCATC 57.645 50.000 0.00 0.00 0.00 3.91
407 586 0.947244 GCACCCCATCTTAAGCATCG 59.053 55.000 0.00 0.00 0.00 3.84
408 587 1.747206 GCACCCCATCTTAAGCATCGT 60.747 52.381 0.00 0.00 0.00 3.73
409 588 2.484770 GCACCCCATCTTAAGCATCGTA 60.485 50.000 0.00 0.00 0.00 3.43
410 589 3.807209 GCACCCCATCTTAAGCATCGTAT 60.807 47.826 0.00 0.00 0.00 3.06
411 590 4.562757 GCACCCCATCTTAAGCATCGTATA 60.563 45.833 0.00 0.00 0.00 1.47
412 591 5.734720 CACCCCATCTTAAGCATCGTATAT 58.265 41.667 0.00 0.00 0.00 0.86
413 592 6.629515 GCACCCCATCTTAAGCATCGTATATA 60.630 42.308 0.00 0.00 0.00 0.86
414 593 7.500992 CACCCCATCTTAAGCATCGTATATAT 58.499 38.462 0.00 0.00 0.00 0.86
415 594 8.638873 CACCCCATCTTAAGCATCGTATATATA 58.361 37.037 0.00 0.00 0.00 0.86
416 595 8.861086 ACCCCATCTTAAGCATCGTATATATAG 58.139 37.037 0.00 0.00 0.00 1.31
417 596 8.861086 CCCCATCTTAAGCATCGTATATATAGT 58.139 37.037 0.00 0.00 0.00 2.12
439 618 9.871238 ATAGTTCTATGTTCTGTTATGTTCGTT 57.129 29.630 0.00 0.00 0.00 3.85
440 619 8.603242 AGTTCTATGTTCTGTTATGTTCGTTT 57.397 30.769 0.00 0.00 0.00 3.60
441 620 9.052759 AGTTCTATGTTCTGTTATGTTCGTTTT 57.947 29.630 0.00 0.00 0.00 2.43
442 621 9.659830 GTTCTATGTTCTGTTATGTTCGTTTTT 57.340 29.630 0.00 0.00 0.00 1.94
443 622 9.872757 TTCTATGTTCTGTTATGTTCGTTTTTC 57.127 29.630 0.00 0.00 0.00 2.29
444 623 8.500773 TCTATGTTCTGTTATGTTCGTTTTTCC 58.499 33.333 0.00 0.00 0.00 3.13
445 624 6.687081 TGTTCTGTTATGTTCGTTTTTCCT 57.313 33.333 0.00 0.00 0.00 3.36
446 625 7.090953 TGTTCTGTTATGTTCGTTTTTCCTT 57.909 32.000 0.00 0.00 0.00 3.36
447 626 7.540299 TGTTCTGTTATGTTCGTTTTTCCTTT 58.460 30.769 0.00 0.00 0.00 3.11
448 627 8.030106 TGTTCTGTTATGTTCGTTTTTCCTTTT 58.970 29.630 0.00 0.00 0.00 2.27
449 628 7.979115 TCTGTTATGTTCGTTTTTCCTTTTG 57.021 32.000 0.00 0.00 0.00 2.44
450 629 6.474102 TCTGTTATGTTCGTTTTTCCTTTTGC 59.526 34.615 0.00 0.00 0.00 3.68
451 630 6.334202 TGTTATGTTCGTTTTTCCTTTTGCT 58.666 32.000 0.00 0.00 0.00 3.91
452 631 6.254589 TGTTATGTTCGTTTTTCCTTTTGCTG 59.745 34.615 0.00 0.00 0.00 4.41
453 632 4.181309 TGTTCGTTTTTCCTTTTGCTGT 57.819 36.364 0.00 0.00 0.00 4.40
454 633 4.170256 TGTTCGTTTTTCCTTTTGCTGTC 58.830 39.130 0.00 0.00 0.00 3.51
455 634 4.082463 TGTTCGTTTTTCCTTTTGCTGTCT 60.082 37.500 0.00 0.00 0.00 3.41
456 635 4.027572 TCGTTTTTCCTTTTGCTGTCTG 57.972 40.909 0.00 0.00 0.00 3.51
457 636 3.692101 TCGTTTTTCCTTTTGCTGTCTGA 59.308 39.130 0.00 0.00 0.00 3.27
458 637 4.338118 TCGTTTTTCCTTTTGCTGTCTGAT 59.662 37.500 0.00 0.00 0.00 2.90
459 638 5.043248 CGTTTTTCCTTTTGCTGTCTGATT 58.957 37.500 0.00 0.00 0.00 2.57
460 639 5.051508 CGTTTTTCCTTTTGCTGTCTGATTG 60.052 40.000 0.00 0.00 0.00 2.67
461 640 5.850557 TTTTCCTTTTGCTGTCTGATTGA 57.149 34.783 0.00 0.00 0.00 2.57
462 641 4.836125 TTCCTTTTGCTGTCTGATTGAC 57.164 40.909 0.00 0.00 45.54 3.18
587 1705 4.327680 ACTTAAGGACCACATTGCTTCTC 58.672 43.478 7.53 0.00 0.00 2.87
608 1726 2.165998 GACTTTCTTGGATGCTTGCCT 58.834 47.619 0.00 0.00 0.00 4.75
609 1727 2.560105 GACTTTCTTGGATGCTTGCCTT 59.440 45.455 0.00 0.00 0.00 4.35
610 1728 2.298163 ACTTTCTTGGATGCTTGCCTTG 59.702 45.455 0.00 0.00 0.00 3.61
611 1729 0.604578 TTCTTGGATGCTTGCCTTGC 59.395 50.000 0.00 0.00 0.00 4.01
612 1730 1.217244 CTTGGATGCTTGCCTTGCC 59.783 57.895 0.00 0.00 0.00 4.52
613 1731 1.533513 TTGGATGCTTGCCTTGCCA 60.534 52.632 0.00 0.00 0.00 4.92
639 2312 5.337652 CCGAACCTTGGATCTATATCTTCCC 60.338 48.000 0.00 0.00 32.29 3.97
660 2337 4.322499 CCCAGTAGTAGTATAAATGGGGCG 60.322 50.000 10.78 0.00 41.84 6.13
668 2349 1.909700 ATAAATGGGGCGCATACCAG 58.090 50.000 17.99 0.00 40.67 4.00
671 2352 0.185901 AATGGGGCGCATACCAGAAT 59.814 50.000 17.99 8.71 40.67 2.40
687 2425 6.521151 ACCAGAATTGACATTTCCTTCATC 57.479 37.500 6.48 0.00 0.00 2.92
716 2463 6.150976 TCAATTGGATCTATGTCGCAAAGTTT 59.849 34.615 5.42 0.00 0.00 2.66
767 2522 7.665561 TTTTTAATTACTGCAATTGCTTCCC 57.334 32.000 29.37 2.49 42.66 3.97
783 2541 4.183865 GCTTCCCTAAATTGTCATTTGCC 58.816 43.478 0.00 0.00 34.29 4.52
788 2547 6.836242 TCCCTAAATTGTCATTTGCCTTTTT 58.164 32.000 0.00 0.00 34.29 1.94
789 2548 6.709846 TCCCTAAATTGTCATTTGCCTTTTTG 59.290 34.615 0.00 0.00 34.29 2.44
837 2605 3.119849 CCGAGCCTTTCAAATGTTGGTAG 60.120 47.826 0.00 0.00 0.00 3.18
843 2611 5.920840 GCCTTTCAAATGTTGGTAGTCTTTC 59.079 40.000 0.00 0.00 0.00 2.62
851 2619 5.042463 TGTTGGTAGTCTTTCACATGGAA 57.958 39.130 0.00 0.00 0.00 3.53
915 2685 5.850614 ACGGTAACATCTGTTATATGGTCC 58.149 41.667 6.10 1.69 41.85 4.46
974 2751 2.044650 ATGCAGACAAGCGGCCAT 60.045 55.556 2.24 0.00 36.83 4.40
1020 2797 5.645067 CACAATGGAGATAGCTTTTCTCACA 59.355 40.000 21.32 17.50 41.16 3.58
1338 3122 7.156876 TGGTTCATGGAGTTATGAAAATGAC 57.843 36.000 3.05 0.00 45.62 3.06
1524 3310 2.229784 CCCATTCTTTGTCAGAACTGGC 59.770 50.000 0.00 0.00 44.70 4.85
1735 3521 6.449698 AGTGAGCTCATAAATTTGTTGGTTG 58.550 36.000 21.47 0.00 0.00 3.77
1746 3532 4.705337 TTTGTTGGTTGGTGTCAGTTAC 57.295 40.909 0.00 0.00 0.00 2.50
1815 3601 5.070847 ACTCAAGTTTTTCTCCATGGCAAAT 59.929 36.000 6.96 0.00 0.00 2.32
2143 3935 4.305989 TCAAATGACTCAAAGTTGCACC 57.694 40.909 0.00 0.00 0.00 5.01
2298 4090 5.710567 CCTCATTCATCCTGCATATGACATT 59.289 40.000 6.97 0.00 33.18 2.71
2422 4214 7.298374 TCCTAATACTTCTCTAGCCAATCAGA 58.702 38.462 0.00 0.00 0.00 3.27
2472 4264 4.154347 GCACAGAGGCCTCGAGGG 62.154 72.222 32.06 24.14 35.18 4.30
2638 4430 5.277857 TCCTTATCCTGTTAGCTACAAGC 57.722 43.478 0.00 0.00 42.84 4.01
3125 4961 6.846283 GTCAGTTCTGTTTTCGTAGAAATGTG 59.154 38.462 12.27 1.88 44.67 3.21
3155 5018 5.932303 GCATACAGACAAACCTTAGAACAGA 59.068 40.000 0.00 0.00 0.00 3.41
3194 5080 0.679002 TGAACTACTCCCTCCGTCCG 60.679 60.000 0.00 0.00 0.00 4.79
3195 5081 1.379576 AACTACTCCCTCCGTCCGG 60.380 63.158 0.00 0.00 0.00 5.14
3196 5082 1.856539 AACTACTCCCTCCGTCCGGA 61.857 60.000 0.00 0.00 42.90 5.14
3201 5087 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
3202 5088 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
3203 5089 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
3205 5091 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
3207 5093 1.135315 TCCGTCCGGAAATACTTGTCG 60.135 52.381 5.23 1.25 42.05 4.35
3209 5095 1.135315 CGTCCGGAAATACTTGTCGGA 60.135 52.381 5.23 0.00 46.06 4.55
3213 5099 3.258872 TCCGGAAATACTTGTCGGAGAAA 59.741 43.478 0.00 0.00 43.84 2.52
3216 5102 4.034048 CGGAAATACTTGTCGGAGAAATGG 59.966 45.833 0.00 0.00 39.69 3.16
3219 5105 6.238484 GGAAATACTTGTCGGAGAAATGGATG 60.238 42.308 0.00 0.00 39.69 3.51
3220 5106 3.703001 ACTTGTCGGAGAAATGGATGT 57.297 42.857 0.00 0.00 39.69 3.06
3222 5108 5.359194 ACTTGTCGGAGAAATGGATGTAT 57.641 39.130 0.00 0.00 39.69 2.29
3227 5113 6.068670 TGTCGGAGAAATGGATGTATCTAGA 58.931 40.000 0.00 0.00 39.69 2.43
3228 5114 6.016192 TGTCGGAGAAATGGATGTATCTAGAC 60.016 42.308 0.00 0.00 39.69 2.59
3229 5115 6.016192 GTCGGAGAAATGGATGTATCTAGACA 60.016 42.308 0.00 0.00 39.69 3.41
3230 5116 6.721668 TCGGAGAAATGGATGTATCTAGACAT 59.278 38.462 0.00 0.00 42.82 3.06
3232 5118 8.690884 CGGAGAAATGGATGTATCTAGACATAT 58.309 37.037 0.00 0.00 40.18 1.78
3233 5119 9.814899 GGAGAAATGGATGTATCTAGACATATG 57.185 37.037 0.00 0.00 40.18 1.78
3359 5253 6.039941 CCAAGAACTCTACCTATAGACCTGTG 59.960 46.154 0.00 0.00 33.66 3.66
3377 5271 2.038033 TGTGTTGCTAAGTGGGTCCTAC 59.962 50.000 0.00 0.00 0.00 3.18
3378 5272 2.302157 GTGTTGCTAAGTGGGTCCTACT 59.698 50.000 1.17 1.17 0.00 2.57
3379 5273 2.976882 TGTTGCTAAGTGGGTCCTACTT 59.023 45.455 22.69 22.69 41.06 2.24
3380 5274 4.020839 GTGTTGCTAAGTGGGTCCTACTTA 60.021 45.833 22.52 22.52 39.06 2.24
3385 5279 5.678955 CTAAGTGGGTCCTACTTAGCTTT 57.321 43.478 31.06 10.39 45.98 3.51
3386 5280 4.995624 AAGTGGGTCCTACTTAGCTTTT 57.004 40.909 18.43 0.00 36.66 2.27
3387 5281 4.995624 AGTGGGTCCTACTTAGCTTTTT 57.004 40.909 1.17 0.00 0.00 1.94
3424 5318 8.468399 GGTCCTACTTAGCTATATATTCGCTTT 58.532 37.037 12.62 3.78 35.33 3.51
3461 5374 6.866480 TGATTTTCTTCTGTCTTTGCACTTT 58.134 32.000 0.00 0.00 0.00 2.66
3462 5375 6.753279 TGATTTTCTTCTGTCTTTGCACTTTG 59.247 34.615 0.00 0.00 0.00 2.77
3563 5482 3.650139 TGTAGGTTCAGCTTTTCGACTC 58.350 45.455 0.00 0.00 0.00 3.36
3589 5508 4.223953 TCTTCTCCCACAGTGAGTAAACT 58.776 43.478 0.62 0.00 0.00 2.66
3685 5616 3.118847 TCTGTATCTGCTTGCAGGAGAAG 60.119 47.826 20.62 13.79 45.79 2.85
3689 5620 4.978438 ATCTGCTTGCAGGAGAAGATAT 57.022 40.909 20.62 3.52 45.79 1.63
3855 5786 5.880901 AGTAGTGATGATCCTGTTGGTTTT 58.119 37.500 0.00 0.00 34.23 2.43
3921 5852 1.153823 CTCACGGTCAAGGCTACGG 60.154 63.158 0.00 0.00 0.00 4.02
4171 6294 6.152831 GGTGTTAAAATCCTGGAATAACAGCT 59.847 38.462 30.33 6.04 44.91 4.24
4172 6295 7.309805 GGTGTTAAAATCCTGGAATAACAGCTT 60.310 37.037 30.33 10.52 44.91 3.74
4173 6296 8.088365 GTGTTAAAATCCTGGAATAACAGCTTT 58.912 33.333 22.64 7.34 37.20 3.51
4174 6297 9.303116 TGTTAAAATCCTGGAATAACAGCTTTA 57.697 29.630 20.18 5.83 37.16 1.85
4180 6303 9.657419 AATCCTGGAATAACAGCTTTAATTTTG 57.343 29.630 0.00 0.00 37.16 2.44
4181 6304 8.415950 TCCTGGAATAACAGCTTTAATTTTGA 57.584 30.769 0.00 0.00 37.16 2.69
4182 6305 8.865090 TCCTGGAATAACAGCTTTAATTTTGAA 58.135 29.630 0.00 0.00 37.16 2.69
4183 6306 9.657419 CCTGGAATAACAGCTTTAATTTTGAAT 57.343 29.630 0.00 0.00 37.16 2.57
4190 6313 8.728088 AACAGCTTTAATTTTGAATAGTCGTG 57.272 30.769 0.00 0.00 0.00 4.35
4191 6314 7.871853 ACAGCTTTAATTTTGAATAGTCGTGT 58.128 30.769 0.00 0.00 0.00 4.49
4192 6315 7.803189 ACAGCTTTAATTTTGAATAGTCGTGTG 59.197 33.333 0.00 0.00 0.00 3.82
4193 6316 7.803189 CAGCTTTAATTTTGAATAGTCGTGTGT 59.197 33.333 0.00 0.00 0.00 3.72
4194 6317 8.995220 AGCTTTAATTTTGAATAGTCGTGTGTA 58.005 29.630 0.00 0.00 0.00 2.90
4195 6318 9.047871 GCTTTAATTTTGAATAGTCGTGTGTAC 57.952 33.333 0.00 0.00 0.00 2.90
4198 6321 9.701098 TTAATTTTGAATAGTCGTGTGTACTCT 57.299 29.630 0.00 0.00 0.00 3.24
4199 6322 7.813852 ATTTTGAATAGTCGTGTGTACTCTC 57.186 36.000 0.00 0.00 0.00 3.20
4476 6604 2.548920 CCAGCTCCGTCTTGAGAGTTTT 60.549 50.000 0.00 0.00 34.11 2.43
4515 6643 0.823356 GTGGTGTGGCATGTGTCCTT 60.823 55.000 0.00 0.00 0.00 3.36
4530 6658 0.755079 TCCTTGCGCTGCTCATCTAT 59.245 50.000 9.73 0.00 0.00 1.98
4593 6721 3.136260 GGAGGAGCCTCAGAAGATTCATT 59.864 47.826 17.68 0.00 44.40 2.57
4712 6840 1.635487 TGCCCTTGACATAGAAAGGCT 59.365 47.619 0.00 0.00 41.46 4.58
4786 6915 4.221924 TCTGTACAAAGCTAGTGCATGGTA 59.778 41.667 9.76 0.00 42.74 3.25
4789 6921 5.943416 TGTACAAAGCTAGTGCATGGTATTT 59.057 36.000 6.02 0.00 42.74 1.40
4790 6922 5.314923 ACAAAGCTAGTGCATGGTATTTG 57.685 39.130 12.35 12.35 42.74 2.32
4791 6923 4.158394 ACAAAGCTAGTGCATGGTATTTGG 59.842 41.667 16.13 0.00 42.74 3.28
4792 6924 2.301346 AGCTAGTGCATGGTATTTGGC 58.699 47.619 0.00 0.00 42.74 4.52
4845 6990 1.420138 ACACTGGGGTCAACTAACCTG 59.580 52.381 0.00 0.00 39.42 4.00
4846 6991 1.420138 CACTGGGGTCAACTAACCTGT 59.580 52.381 0.00 0.00 39.42 4.00
4849 7031 2.635915 CTGGGGTCAACTAACCTGTGTA 59.364 50.000 0.00 0.00 39.42 2.90
4852 7034 4.468510 TGGGGTCAACTAACCTGTGTATAG 59.531 45.833 0.00 0.00 39.42 1.31
4859 7042 2.963654 AACCTGTGTATAGAGGGGGT 57.036 50.000 7.61 0.00 41.57 4.95
4861 7044 2.760581 ACCTGTGTATAGAGGGGGTTC 58.239 52.381 7.61 0.00 41.57 3.62
4862 7045 2.045326 ACCTGTGTATAGAGGGGGTTCA 59.955 50.000 7.61 0.00 41.57 3.18
4866 7049 5.340027 CCTGTGTATAGAGGGGGTTCAAAAT 60.340 44.000 0.00 0.00 33.78 1.82
4968 7283 2.669569 GCCGCTTCAGACTTGGCA 60.670 61.111 0.00 0.00 45.06 4.92
4991 7306 3.011566 TGGTTGTGTGGTCTGTTCATT 57.988 42.857 0.00 0.00 0.00 2.57
5014 7329 0.687920 TTGATTGGGCGTAGTGTGGA 59.312 50.000 0.00 0.00 0.00 4.02
5015 7330 0.687920 TGATTGGGCGTAGTGTGGAA 59.312 50.000 0.00 0.00 0.00 3.53
5016 7331 1.338674 TGATTGGGCGTAGTGTGGAAG 60.339 52.381 0.00 0.00 0.00 3.46
5024 7376 3.368116 GGCGTAGTGTGGAAGTCAGTATT 60.368 47.826 0.00 0.00 0.00 1.89
5025 7377 3.612860 GCGTAGTGTGGAAGTCAGTATTG 59.387 47.826 0.00 0.00 0.00 1.90
5026 7378 4.806330 CGTAGTGTGGAAGTCAGTATTGT 58.194 43.478 0.00 0.00 0.00 2.71
5033 7385 3.646162 TGGAAGTCAGTATTGTGTGGACT 59.354 43.478 0.00 0.00 40.33 3.85
5087 7439 3.813596 GGCGGTGCCTGTAGAATG 58.186 61.111 0.00 0.00 46.69 2.67
5088 7440 1.078426 GGCGGTGCCTGTAGAATGT 60.078 57.895 0.00 0.00 46.69 2.71
5089 7441 1.090052 GGCGGTGCCTGTAGAATGTC 61.090 60.000 0.00 0.00 46.69 3.06
5090 7442 0.108138 GCGGTGCCTGTAGAATGTCT 60.108 55.000 0.00 0.00 0.00 3.41
5091 7443 1.927895 CGGTGCCTGTAGAATGTCTC 58.072 55.000 0.00 0.00 0.00 3.36
5092 7444 1.478510 CGGTGCCTGTAGAATGTCTCT 59.521 52.381 0.00 0.00 38.28 3.10
5093 7445 2.688446 CGGTGCCTGTAGAATGTCTCTA 59.312 50.000 0.00 0.00 35.41 2.43
5094 7446 3.243234 CGGTGCCTGTAGAATGTCTCTAG 60.243 52.174 0.00 0.00 37.32 2.43
5095 7447 3.954904 GGTGCCTGTAGAATGTCTCTAGA 59.045 47.826 0.00 0.00 37.32 2.43
5096 7448 4.402793 GGTGCCTGTAGAATGTCTCTAGAA 59.597 45.833 0.00 0.00 37.32 2.10
5097 7449 5.105310 GGTGCCTGTAGAATGTCTCTAGAAA 60.105 44.000 0.00 0.00 37.32 2.52
5200 7565 6.751514 TTGCTCTGTTTTGTCTGAGTTTTA 57.248 33.333 0.00 0.00 36.33 1.52
5236 7601 4.101114 TGAAGCTTATCTTAGGGTGGTCA 58.899 43.478 0.00 0.00 34.56 4.02
5307 7673 9.877178 TGAAAGAGAACATAGGAAGAAATAGTC 57.123 33.333 0.00 0.00 0.00 2.59
5336 7702 9.833182 GATCTTATCAGGAAAGTGAAGAAAAAC 57.167 33.333 0.00 0.00 0.00 2.43
5515 7886 6.815089 TGCAGGTTTGTAATTCATCAGTTTT 58.185 32.000 0.00 0.00 0.00 2.43
5600 7971 6.040166 CAGTAAATAATTCTTGCAGGGATGCT 59.960 38.462 0.00 0.00 35.49 3.79
5601 7972 5.945144 AAATAATTCTTGCAGGGATGCTT 57.055 34.783 0.00 0.00 35.49 3.91
5602 7973 4.931661 ATAATTCTTGCAGGGATGCTTG 57.068 40.909 0.00 0.00 35.49 4.01
5603 7974 2.519771 ATTCTTGCAGGGATGCTTGA 57.480 45.000 0.00 0.00 35.49 3.02
5604 7975 1.830279 TTCTTGCAGGGATGCTTGAG 58.170 50.000 0.00 0.00 35.49 3.02
5605 7976 0.694771 TCTTGCAGGGATGCTTGAGT 59.305 50.000 0.00 0.00 35.49 3.41
5606 7977 0.809385 CTTGCAGGGATGCTTGAGTG 59.191 55.000 0.00 0.00 35.49 3.51
5607 7978 0.609957 TTGCAGGGATGCTTGAGTGG 60.610 55.000 0.00 0.00 35.49 4.00
5608 7979 1.001641 GCAGGGATGCTTGAGTGGT 60.002 57.895 0.00 0.00 0.00 4.16
5609 7980 0.253044 GCAGGGATGCTTGAGTGGTA 59.747 55.000 0.00 0.00 0.00 3.25
5610 7981 1.745141 GCAGGGATGCTTGAGTGGTAG 60.745 57.143 0.00 0.00 0.00 3.18
5611 7982 1.134280 CAGGGATGCTTGAGTGGTAGG 60.134 57.143 0.00 0.00 0.00 3.18
5612 7983 0.464554 GGGATGCTTGAGTGGTAGGC 60.465 60.000 0.00 0.00 0.00 3.93
5613 7984 0.253044 GGATGCTTGAGTGGTAGGCA 59.747 55.000 0.00 0.00 37.32 4.75
5614 7985 1.661341 GATGCTTGAGTGGTAGGCAG 58.339 55.000 0.00 0.00 36.35 4.85
5615 7986 1.208052 GATGCTTGAGTGGTAGGCAGA 59.792 52.381 0.00 0.00 36.35 4.26
5616 7987 1.279496 TGCTTGAGTGGTAGGCAGAT 58.721 50.000 0.00 0.00 0.00 2.90
5617 7988 2.466846 TGCTTGAGTGGTAGGCAGATA 58.533 47.619 0.00 0.00 0.00 1.98
5618 7989 2.837591 TGCTTGAGTGGTAGGCAGATAA 59.162 45.455 0.00 0.00 0.00 1.75
5619 7990 3.455910 TGCTTGAGTGGTAGGCAGATAAT 59.544 43.478 0.00 0.00 0.00 1.28
5620 7991 4.653801 TGCTTGAGTGGTAGGCAGATAATA 59.346 41.667 0.00 0.00 0.00 0.98
5621 7992 5.130311 TGCTTGAGTGGTAGGCAGATAATAA 59.870 40.000 0.00 0.00 0.00 1.40
5622 7993 6.183361 TGCTTGAGTGGTAGGCAGATAATAAT 60.183 38.462 0.00 0.00 0.00 1.28
5623 7994 6.712547 GCTTGAGTGGTAGGCAGATAATAATT 59.287 38.462 0.00 0.00 0.00 1.40
5624 7995 7.095017 GCTTGAGTGGTAGGCAGATAATAATTC 60.095 40.741 0.00 0.00 0.00 2.17
5625 7996 7.618019 TGAGTGGTAGGCAGATAATAATTCT 57.382 36.000 0.00 0.00 0.00 2.40
5626 7997 7.445121 TGAGTGGTAGGCAGATAATAATTCTG 58.555 38.462 0.00 0.00 42.83 3.02
5635 8006 6.754702 CAGATAATAATTCTGCCAGGGATG 57.245 41.667 0.00 0.00 34.68 3.51
5636 8007 5.125097 CAGATAATAATTCTGCCAGGGATGC 59.875 44.000 0.00 0.00 34.68 3.91
5637 8008 3.607490 AATAATTCTGCCAGGGATGCT 57.393 42.857 0.00 0.00 0.00 3.79
5657 8028 0.538287 GCAACTTCCTGGGAGCAAGT 60.538 55.000 0.58 0.00 31.48 3.16
5678 8049 4.349930 AGTGATTAGTGGTACTGGGTTTGT 59.650 41.667 0.00 0.00 0.00 2.83
5679 8050 4.694037 GTGATTAGTGGTACTGGGTTTGTC 59.306 45.833 0.00 0.00 0.00 3.18
5680 8051 4.595781 TGATTAGTGGTACTGGGTTTGTCT 59.404 41.667 0.00 0.00 0.00 3.41
5681 8052 5.781306 TGATTAGTGGTACTGGGTTTGTCTA 59.219 40.000 0.00 0.00 0.00 2.59
5682 8053 6.442564 TGATTAGTGGTACTGGGTTTGTCTAT 59.557 38.462 0.00 0.00 0.00 1.98
5683 8054 6.691255 TTAGTGGTACTGGGTTTGTCTATT 57.309 37.500 0.00 0.00 0.00 1.73
5684 8055 5.161943 AGTGGTACTGGGTTTGTCTATTC 57.838 43.478 0.00 0.00 0.00 1.75
5685 8056 4.844655 AGTGGTACTGGGTTTGTCTATTCT 59.155 41.667 0.00 0.00 0.00 2.40
5686 8057 6.021030 AGTGGTACTGGGTTTGTCTATTCTA 58.979 40.000 0.00 0.00 0.00 2.10
5687 8058 6.154706 AGTGGTACTGGGTTTGTCTATTCTAG 59.845 42.308 0.00 0.00 0.00 2.43
5688 8059 6.021030 TGGTACTGGGTTTGTCTATTCTAGT 58.979 40.000 0.00 0.00 0.00 2.57
5689 8060 6.070995 TGGTACTGGGTTTGTCTATTCTAGTG 60.071 42.308 0.00 0.00 0.00 2.74
5690 8061 6.154021 GGTACTGGGTTTGTCTATTCTAGTGA 59.846 42.308 0.00 0.00 0.00 3.41
5691 8062 6.875972 ACTGGGTTTGTCTATTCTAGTGAT 57.124 37.500 0.00 0.00 0.00 3.06
5692 8063 7.973048 ACTGGGTTTGTCTATTCTAGTGATA 57.027 36.000 0.00 0.00 0.00 2.15
5693 8064 7.783042 ACTGGGTTTGTCTATTCTAGTGATAC 58.217 38.462 0.00 0.00 0.00 2.24
5694 8065 7.620094 ACTGGGTTTGTCTATTCTAGTGATACT 59.380 37.037 0.00 0.00 0.00 2.12
5695 8066 7.782049 TGGGTTTGTCTATTCTAGTGATACTG 58.218 38.462 0.00 0.00 0.00 2.74
5696 8067 7.147724 TGGGTTTGTCTATTCTAGTGATACTGG 60.148 40.741 0.00 0.00 0.00 4.00
5697 8068 6.702282 GGTTTGTCTATTCTAGTGATACTGGC 59.298 42.308 0.00 0.00 0.00 4.85
5698 8069 7.265673 GTTTGTCTATTCTAGTGATACTGGCA 58.734 38.462 0.00 0.00 0.00 4.92
5699 8070 6.641169 TGTCTATTCTAGTGATACTGGCAG 57.359 41.667 14.16 14.16 0.00 4.85
5700 8071 6.129874 TGTCTATTCTAGTGATACTGGCAGT 58.870 40.000 25.34 25.34 0.00 4.40
5701 8072 6.039829 TGTCTATTCTAGTGATACTGGCAGTG 59.960 42.308 29.65 11.32 0.00 3.66
5702 8073 6.263392 GTCTATTCTAGTGATACTGGCAGTGA 59.737 42.308 29.65 13.57 0.00 3.41
5703 8074 7.007116 TCTATTCTAGTGATACTGGCAGTGAT 58.993 38.462 29.65 17.87 0.00 3.06
5704 8075 8.164070 TCTATTCTAGTGATACTGGCAGTGATA 58.836 37.037 29.65 10.94 0.00 2.15
5705 8076 6.392625 TTCTAGTGATACTGGCAGTGATAC 57.607 41.667 29.65 22.19 0.00 2.24
5706 8077 5.696030 TCTAGTGATACTGGCAGTGATACT 58.304 41.667 29.65 26.82 0.00 2.12
5708 8079 3.386078 AGTGATACTGGCAGTGATACTGG 59.614 47.826 29.65 0.00 46.01 4.00
5709 8080 2.700371 TGATACTGGCAGTGATACTGGG 59.300 50.000 29.65 0.00 46.01 4.45
5710 8081 2.247699 TACTGGCAGTGATACTGGGT 57.752 50.000 29.65 1.97 46.01 4.51
5711 8082 1.362224 ACTGGCAGTGATACTGGGTT 58.638 50.000 21.37 0.00 46.01 4.11
5712 8083 1.705186 ACTGGCAGTGATACTGGGTTT 59.295 47.619 21.37 0.00 46.01 3.27
5713 8084 2.086869 CTGGCAGTGATACTGGGTTTG 58.913 52.381 6.28 0.00 46.01 2.93
5736 8107 9.829507 TTTGCTTTTCTGATTTCTTCCAAATTA 57.170 25.926 0.00 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 1.509644 CGGCAACATCAGCACACACT 61.510 55.000 0.00 0.00 0.00 3.55
41 42 1.081906 CGGCAACATCAGCACACAC 60.082 57.895 0.00 0.00 0.00 3.82
42 43 2.906939 GCGGCAACATCAGCACACA 61.907 57.895 0.00 0.00 0.00 3.72
43 44 2.126734 GCGGCAACATCAGCACAC 60.127 61.111 0.00 0.00 0.00 3.82
44 45 2.281692 AGCGGCAACATCAGCACA 60.282 55.556 1.45 0.00 0.00 4.57
45 46 2.177531 CAGCGGCAACATCAGCAC 59.822 61.111 1.45 0.00 0.00 4.40
46 47 2.281692 ACAGCGGCAACATCAGCA 60.282 55.556 1.45 0.00 0.00 4.41
66 67 2.759191 GAGGACGAGCATGCAATATCA 58.241 47.619 21.98 0.00 0.00 2.15
67 68 1.723542 CGAGGACGAGCATGCAATATC 59.276 52.381 21.98 11.29 42.66 1.63
69 70 0.744281 TCGAGGACGAGCATGCAATA 59.256 50.000 21.98 0.00 43.81 1.90
70 71 1.517361 TCGAGGACGAGCATGCAAT 59.483 52.632 21.98 3.98 43.81 3.56
141 160 3.495377 TGAACGGAATGAAACGTGTTAGG 59.505 43.478 0.00 0.00 43.31 2.69
144 163 2.032426 GGTGAACGGAATGAAACGTGTT 59.968 45.455 0.00 0.00 43.31 3.32
145 164 1.600485 GGTGAACGGAATGAAACGTGT 59.400 47.619 0.00 0.00 43.31 4.49
148 167 3.650183 CGGTGAACGGAATGAAACG 57.350 52.632 0.00 0.00 39.42 3.60
203 222 2.768253 TGCATCGACAGGAAATCAGT 57.232 45.000 0.00 0.00 0.00 3.41
216 260 2.389059 CAGACGGAGAAGTATGCATCG 58.611 52.381 0.19 0.50 0.00 3.84
233 277 3.261643 TGAATGCCAACTAGAGAAGCAGA 59.738 43.478 0.00 0.00 36.80 4.26
295 352 0.924090 GAAGCTGCGACAGGATTACG 59.076 55.000 8.57 0.00 31.21 3.18
296 353 2.159170 AGAGAAGCTGCGACAGGATTAC 60.159 50.000 8.57 0.00 31.21 1.89
301 358 0.458197 CAGAGAGAAGCTGCGACAGG 60.458 60.000 8.57 0.00 31.21 4.00
341 501 2.482142 GGAACGGCAATCAACCAAACAA 60.482 45.455 0.00 0.00 0.00 2.83
363 542 0.524862 GCAAGAGGACACAATGCCTG 59.475 55.000 0.00 0.00 33.84 4.85
364 543 0.111061 TGCAAGAGGACACAATGCCT 59.889 50.000 0.00 0.00 36.20 4.75
365 544 0.524862 CTGCAAGAGGACACAATGCC 59.475 55.000 0.00 0.00 36.20 4.40
366 545 0.524862 CCTGCAAGAGGACACAATGC 59.475 55.000 0.00 0.00 46.33 3.56
367 546 2.189594 TCCTGCAAGAGGACACAATG 57.810 50.000 0.00 0.00 46.96 2.82
381 560 0.255890 TAAGATGGGGTGCTTCCTGC 59.744 55.000 0.00 0.00 43.25 4.85
382 561 2.648059 CTTAAGATGGGGTGCTTCCTG 58.352 52.381 0.00 0.00 36.25 3.86
383 562 1.064389 GCTTAAGATGGGGTGCTTCCT 60.064 52.381 6.67 0.00 36.25 3.36
384 563 1.340991 TGCTTAAGATGGGGTGCTTCC 60.341 52.381 6.67 0.00 0.00 3.46
385 564 2.128771 TGCTTAAGATGGGGTGCTTC 57.871 50.000 6.67 0.00 0.00 3.86
386 565 2.659428 GATGCTTAAGATGGGGTGCTT 58.341 47.619 6.67 0.00 0.00 3.91
387 566 1.475751 CGATGCTTAAGATGGGGTGCT 60.476 52.381 6.67 0.00 0.00 4.40
388 567 0.947244 CGATGCTTAAGATGGGGTGC 59.053 55.000 6.67 0.00 0.00 5.01
389 568 2.332063 ACGATGCTTAAGATGGGGTG 57.668 50.000 6.67 0.00 0.00 4.61
390 569 7.676683 ATATATACGATGCTTAAGATGGGGT 57.323 36.000 6.67 0.00 0.00 4.95
391 570 8.861086 ACTATATATACGATGCTTAAGATGGGG 58.139 37.037 6.67 0.00 0.00 4.96
413 592 9.871238 AACGAACATAACAGAACATAGAACTAT 57.129 29.630 0.00 0.00 0.00 2.12
414 593 9.701098 AAACGAACATAACAGAACATAGAACTA 57.299 29.630 0.00 0.00 0.00 2.24
415 594 8.603242 AAACGAACATAACAGAACATAGAACT 57.397 30.769 0.00 0.00 0.00 3.01
416 595 9.659830 AAAAACGAACATAACAGAACATAGAAC 57.340 29.630 0.00 0.00 0.00 3.01
417 596 9.872757 GAAAAACGAACATAACAGAACATAGAA 57.127 29.630 0.00 0.00 0.00 2.10
418 597 8.500773 GGAAAAACGAACATAACAGAACATAGA 58.499 33.333 0.00 0.00 0.00 1.98
419 598 8.504005 AGGAAAAACGAACATAACAGAACATAG 58.496 33.333 0.00 0.00 0.00 2.23
420 599 8.385898 AGGAAAAACGAACATAACAGAACATA 57.614 30.769 0.00 0.00 0.00 2.29
421 600 7.272037 AGGAAAAACGAACATAACAGAACAT 57.728 32.000 0.00 0.00 0.00 2.71
422 601 6.687081 AGGAAAAACGAACATAACAGAACA 57.313 33.333 0.00 0.00 0.00 3.18
423 602 7.980742 AAAGGAAAAACGAACATAACAGAAC 57.019 32.000 0.00 0.00 0.00 3.01
424 603 7.009723 GCAAAAGGAAAAACGAACATAACAGAA 59.990 33.333 0.00 0.00 0.00 3.02
425 604 6.474102 GCAAAAGGAAAAACGAACATAACAGA 59.526 34.615 0.00 0.00 0.00 3.41
426 605 6.475402 AGCAAAAGGAAAAACGAACATAACAG 59.525 34.615 0.00 0.00 0.00 3.16
427 606 6.254589 CAGCAAAAGGAAAAACGAACATAACA 59.745 34.615 0.00 0.00 0.00 2.41
428 607 6.254804 ACAGCAAAAGGAAAAACGAACATAAC 59.745 34.615 0.00 0.00 0.00 1.89
429 608 6.334202 ACAGCAAAAGGAAAAACGAACATAA 58.666 32.000 0.00 0.00 0.00 1.90
430 609 5.897050 ACAGCAAAAGGAAAAACGAACATA 58.103 33.333 0.00 0.00 0.00 2.29
431 610 4.754322 ACAGCAAAAGGAAAAACGAACAT 58.246 34.783 0.00 0.00 0.00 2.71
432 611 4.082463 AGACAGCAAAAGGAAAAACGAACA 60.082 37.500 0.00 0.00 0.00 3.18
433 612 4.265320 CAGACAGCAAAAGGAAAAACGAAC 59.735 41.667 0.00 0.00 0.00 3.95
434 613 4.156922 TCAGACAGCAAAAGGAAAAACGAA 59.843 37.500 0.00 0.00 0.00 3.85
435 614 3.692101 TCAGACAGCAAAAGGAAAAACGA 59.308 39.130 0.00 0.00 0.00 3.85
436 615 4.027572 TCAGACAGCAAAAGGAAAAACG 57.972 40.909 0.00 0.00 0.00 3.60
437 616 6.019559 GTCAATCAGACAGCAAAAGGAAAAAC 60.020 38.462 0.00 0.00 46.77 2.43
438 617 6.042143 GTCAATCAGACAGCAAAAGGAAAAA 58.958 36.000 0.00 0.00 46.77 1.94
439 618 5.591099 GTCAATCAGACAGCAAAAGGAAAA 58.409 37.500 0.00 0.00 46.77 2.29
440 619 5.186996 GTCAATCAGACAGCAAAAGGAAA 57.813 39.130 0.00 0.00 46.77 3.13
441 620 4.836125 GTCAATCAGACAGCAAAAGGAA 57.164 40.909 0.00 0.00 46.77 3.36
473 652 1.462670 GAGAGAGAACAAAAGCCGCAG 59.537 52.381 0.00 0.00 0.00 5.18
477 656 2.498167 TGCAGAGAGAGAACAAAAGCC 58.502 47.619 0.00 0.00 0.00 4.35
515 1633 5.652994 ACTACTCTCAACAGATTCCAGTC 57.347 43.478 0.00 0.00 0.00 3.51
564 1682 5.488341 GAGAAGCAATGTGGTCCTTAAGTA 58.512 41.667 0.97 0.00 0.00 2.24
587 1705 1.135575 GGCAAGCATCCAAGAAAGTCG 60.136 52.381 0.00 0.00 0.00 4.18
608 1726 2.424842 ATCCAAGGTTCGGCTGGCAA 62.425 55.000 1.08 0.00 0.00 4.52
609 1727 2.819984 GATCCAAGGTTCGGCTGGCA 62.820 60.000 1.08 0.00 0.00 4.92
610 1728 2.044946 ATCCAAGGTTCGGCTGGC 60.045 61.111 0.00 0.00 0.00 4.85
611 1729 0.830648 TAGATCCAAGGTTCGGCTGG 59.169 55.000 0.00 0.00 0.00 4.85
612 1730 2.918712 ATAGATCCAAGGTTCGGCTG 57.081 50.000 0.00 0.00 0.00 4.85
613 1731 4.421131 AGATATAGATCCAAGGTTCGGCT 58.579 43.478 0.00 0.00 31.81 5.52
617 1735 6.271159 ACTGGGAAGATATAGATCCAAGGTTC 59.729 42.308 9.16 0.00 31.81 3.62
639 2312 4.243270 GCGCCCCATTTATACTACTACTG 58.757 47.826 0.00 0.00 0.00 2.74
656 2329 0.663153 GTCAATTCTGGTATGCGCCC 59.337 55.000 4.18 0.00 0.00 6.13
660 2337 5.841957 AGGAAATGTCAATTCTGGTATGC 57.158 39.130 0.79 0.00 0.00 3.14
668 2349 5.240713 AGCGATGAAGGAAATGTCAATTC 57.759 39.130 0.00 0.00 0.00 2.17
671 2352 4.071423 TGAAGCGATGAAGGAAATGTCAA 58.929 39.130 0.00 0.00 0.00 3.18
687 2425 3.363378 GCGACATAGATCCAATTGAAGCG 60.363 47.826 7.12 0.00 0.00 4.68
716 2463 9.947433 AATGGATTGAATATTGCAAAGAAAAGA 57.053 25.926 1.71 0.00 0.00 2.52
767 2522 7.918643 ACACAAAAAGGCAAATGACAATTTAG 58.081 30.769 0.00 0.00 34.14 1.85
783 2541 6.183360 CGTTGAAAGGAAAAGGACACAAAAAG 60.183 38.462 0.00 0.00 0.00 2.27
788 2547 3.349022 ACGTTGAAAGGAAAAGGACACA 58.651 40.909 0.00 0.00 0.00 3.72
789 2548 4.365899 AACGTTGAAAGGAAAAGGACAC 57.634 40.909 0.00 0.00 0.00 3.67
843 2611 8.746052 TTCCCTAAAGTAACATATTCCATGTG 57.254 34.615 0.00 0.00 31.80 3.21
876 2644 5.525745 TGTTACCGTCATACCAATGCATAAG 59.474 40.000 0.00 0.00 32.76 1.73
928 2701 5.576774 GCAACTTATTATGTGCTGAAAACCC 59.423 40.000 0.00 0.00 0.00 4.11
974 2751 3.258123 GCCTCAAATGGTTCAAAGGCTAA 59.742 43.478 4.00 0.00 44.64 3.09
1020 2797 3.307339 GGAGCAGAGAGAGAACCAACAAT 60.307 47.826 0.00 0.00 0.00 2.71
1332 3116 6.411376 TGATACAAGGAATACGGTGTCATTT 58.589 36.000 0.00 0.00 29.55 2.32
1338 3122 4.402056 ACCTGATACAAGGAATACGGTG 57.598 45.455 0.00 0.00 40.02 4.94
1436 3222 1.005340 GACTCGGAGCTCATTTGCTG 58.995 55.000 17.19 0.59 44.17 4.41
1524 3310 4.996122 GCCATTTGATAGAGATCACTGGAG 59.004 45.833 15.19 0.00 42.64 3.86
1735 3521 3.673594 CGAGACTCCATGTAACTGACACC 60.674 52.174 0.00 0.00 42.17 4.16
1746 3532 2.492019 TGATAACGCGAGACTCCATG 57.508 50.000 15.93 0.00 0.00 3.66
1815 3601 2.557924 GTTGCCCATCATGTTCAGTTGA 59.442 45.455 0.00 0.00 0.00 3.18
2143 3935 2.503895 AGAGTTTCCCCAGCTTCATG 57.496 50.000 0.00 0.00 0.00 3.07
2217 4009 3.821033 CCCCAGTGAAGTTTACCTTTCTG 59.179 47.826 0.00 0.00 36.28 3.02
2298 4090 5.042463 TGCCATTTCCGATGAGGTTTATA 57.958 39.130 0.00 0.00 41.99 0.98
2422 4214 6.718454 CCAGGCCAAATAACATCATAGAGATT 59.282 38.462 5.01 0.00 33.72 2.40
2472 4264 2.496070 GGCATTAGAAGGGAAAACCCAC 59.504 50.000 8.05 1.86 41.63 4.61
2638 4430 3.721087 ACCACTCCCAAAAGGTATGAG 57.279 47.619 0.00 0.00 36.75 2.90
2751 4575 0.252696 AGATGCCCCTGGTCAGTACA 60.253 55.000 0.00 0.00 0.00 2.90
3125 4961 3.412386 AGGTTTGTCTGTATGCACCTTC 58.588 45.455 0.00 0.00 29.99 3.46
3155 5018 3.006940 CACGTGGTATGTTAACAGGCAT 58.993 45.455 14.65 0.00 34.78 4.40
3194 5080 5.183228 TCCATTTCTCCGACAAGTATTTCC 58.817 41.667 0.00 0.00 0.00 3.13
3195 5081 6.316390 ACATCCATTTCTCCGACAAGTATTTC 59.684 38.462 0.00 0.00 0.00 2.17
3196 5082 6.180472 ACATCCATTTCTCCGACAAGTATTT 58.820 36.000 0.00 0.00 0.00 1.40
3201 5087 5.605534 AGATACATCCATTTCTCCGACAAG 58.394 41.667 0.00 0.00 0.00 3.16
3202 5088 5.614324 AGATACATCCATTTCTCCGACAA 57.386 39.130 0.00 0.00 0.00 3.18
3203 5089 6.016192 GTCTAGATACATCCATTTCTCCGACA 60.016 42.308 0.00 0.00 0.00 4.35
3205 5091 6.068670 TGTCTAGATACATCCATTTCTCCGA 58.931 40.000 0.00 0.00 0.00 4.55
3207 5093 9.814899 CATATGTCTAGATACATCCATTTCTCC 57.185 37.037 0.00 0.00 40.52 3.71
3263 5149 5.107760 CGTTCGGAATTACTTGTCGAAGAAA 60.108 40.000 0.00 0.00 39.69 2.52
3266 5152 3.060363 CCGTTCGGAATTACTTGTCGAAG 59.940 47.826 5.19 0.00 39.89 3.79
3268 5154 2.228582 TCCGTTCGGAATTACTTGTCGA 59.771 45.455 11.66 0.00 0.00 4.20
3269 5155 2.597305 CTCCGTTCGGAATTACTTGTCG 59.403 50.000 14.79 0.00 33.41 4.35
3270 5156 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
3272 5158 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
3273 5159 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
3274 5160 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
3275 5161 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
3276 5162 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
3277 5163 1.856629 TACTCCCTCCGTTCGGAATT 58.143 50.000 14.79 0.00 33.41 2.17
3278 5164 2.083628 ATACTCCCTCCGTTCGGAAT 57.916 50.000 14.79 2.14 33.41 3.01
3279 5165 1.856629 AATACTCCCTCCGTTCGGAA 58.143 50.000 14.79 0.00 33.41 4.30
3280 5166 2.734755 TAATACTCCCTCCGTTCGGA 57.265 50.000 13.34 13.34 0.00 4.55
3281 5167 3.155501 AGATAATACTCCCTCCGTTCGG 58.844 50.000 4.74 4.74 0.00 4.30
3282 5168 4.037684 ACAAGATAATACTCCCTCCGTTCG 59.962 45.833 0.00 0.00 0.00 3.95
3359 5253 3.697619 AAGTAGGACCCACTTAGCAAC 57.302 47.619 3.19 0.00 34.50 4.17
3384 5278 5.300411 AGTAGGACCTCCTTTTCGAAAAA 57.700 39.130 22.67 9.49 46.09 1.94
3385 5279 4.968971 AGTAGGACCTCCTTTTCGAAAA 57.031 40.909 21.35 21.35 46.09 2.29
3386 5280 4.968971 AAGTAGGACCTCCTTTTCGAAA 57.031 40.909 6.47 6.47 46.09 3.46
3387 5281 4.081807 GCTAAGTAGGACCTCCTTTTCGAA 60.082 45.833 4.44 0.00 46.09 3.71
3388 5282 3.446516 GCTAAGTAGGACCTCCTTTTCGA 59.553 47.826 4.44 0.00 46.09 3.71
3389 5283 3.447944 AGCTAAGTAGGACCTCCTTTTCG 59.552 47.826 4.44 0.00 46.09 3.46
3390 5284 6.734502 ATAGCTAAGTAGGACCTCCTTTTC 57.265 41.667 4.44 0.00 46.09 2.29
3393 5287 9.703677 GAATATATAGCTAAGTAGGACCTCCTT 57.296 37.037 4.55 4.55 46.09 3.36
3395 5289 7.255208 GCGAATATATAGCTAAGTAGGACCTCC 60.255 44.444 0.00 0.00 0.00 4.30
3396 5290 7.499895 AGCGAATATATAGCTAAGTAGGACCTC 59.500 40.741 12.34 0.00 39.74 3.85
3397 5291 7.348033 AGCGAATATATAGCTAAGTAGGACCT 58.652 38.462 12.34 0.00 39.74 3.85
3398 5292 7.571080 AGCGAATATATAGCTAAGTAGGACC 57.429 40.000 12.34 0.00 39.74 4.46
3435 5329 7.047460 AGTGCAAAGACAGAAGAAAATCATT 57.953 32.000 0.00 0.00 0.00 2.57
3461 5374 1.404748 CATTTGGCGATACATGTGGCA 59.595 47.619 9.11 7.77 36.29 4.92
3462 5375 1.865248 GCATTTGGCGATACATGTGGC 60.865 52.381 9.11 9.14 0.00 5.01
3563 5482 2.366916 ACTCACTGTGGGAGAAGAACAG 59.633 50.000 15.87 0.00 45.46 3.16
3589 5508 9.787435 ACAACAAACACATAATAGAGAAGGTTA 57.213 29.630 0.00 0.00 0.00 2.85
3637 5556 1.954146 GTGAGTCGTGCGCCAGAAA 60.954 57.895 4.18 0.00 0.00 2.52
3685 5616 5.015515 ACGCCCTAAGGTACTCCTAATATC 58.984 45.833 0.00 0.00 44.35 1.63
3689 5620 2.381911 CACGCCCTAAGGTACTCCTAA 58.618 52.381 0.00 0.00 44.35 2.69
3855 5786 1.813178 TGTGCAAACGAACCAACTTGA 59.187 42.857 0.00 0.00 0.00 3.02
4117 6048 9.784531 AATATGGTGTTCTCATATTCTAACCTG 57.215 33.333 0.00 0.00 41.34 4.00
4138 6230 9.889128 ATTCCAGGATTTTAACACCAAAATATG 57.111 29.630 0.00 0.00 38.04 1.78
4172 6295 9.701098 AGAGTACACACGACTATTCAAAATTAA 57.299 29.630 0.00 0.00 0.00 1.40
4173 6296 9.350357 GAGAGTACACACGACTATTCAAAATTA 57.650 33.333 0.00 0.00 0.00 1.40
4174 6297 8.088981 AGAGAGTACACACGACTATTCAAAATT 58.911 33.333 0.00 0.00 0.00 1.82
4175 6298 7.603651 AGAGAGTACACACGACTATTCAAAAT 58.396 34.615 0.00 0.00 0.00 1.82
4176 6299 6.978338 AGAGAGTACACACGACTATTCAAAA 58.022 36.000 0.00 0.00 0.00 2.44
4177 6300 6.570672 AGAGAGTACACACGACTATTCAAA 57.429 37.500 0.00 0.00 0.00 2.69
4178 6301 6.877855 ACTAGAGAGTACACACGACTATTCAA 59.122 38.462 0.00 0.00 32.65 2.69
4179 6302 6.404708 ACTAGAGAGTACACACGACTATTCA 58.595 40.000 0.00 0.00 32.65 2.57
4180 6303 6.907206 ACTAGAGAGTACACACGACTATTC 57.093 41.667 0.00 0.00 32.65 1.75
4181 6304 8.202811 TGATACTAGAGAGTACACACGACTATT 58.797 37.037 0.00 0.00 41.01 1.73
4182 6305 7.724287 TGATACTAGAGAGTACACACGACTAT 58.276 38.462 0.00 0.00 41.01 2.12
4183 6306 7.105241 TGATACTAGAGAGTACACACGACTA 57.895 40.000 0.00 0.00 41.01 2.59
4184 6307 5.975282 TGATACTAGAGAGTACACACGACT 58.025 41.667 0.00 0.00 41.01 4.18
4185 6308 6.651308 CATGATACTAGAGAGTACACACGAC 58.349 44.000 0.00 0.00 41.01 4.34
4186 6309 5.236695 GCATGATACTAGAGAGTACACACGA 59.763 44.000 0.00 0.00 41.01 4.35
4187 6310 5.007724 TGCATGATACTAGAGAGTACACACG 59.992 44.000 0.00 0.00 41.01 4.49
4188 6311 6.378710 TGCATGATACTAGAGAGTACACAC 57.621 41.667 0.00 0.00 41.01 3.82
4189 6312 6.603599 AGTTGCATGATACTAGAGAGTACACA 59.396 38.462 0.00 0.00 41.01 3.72
4190 6313 7.033530 AGTTGCATGATACTAGAGAGTACAC 57.966 40.000 0.00 0.00 41.01 2.90
4191 6314 7.646548 AAGTTGCATGATACTAGAGAGTACA 57.353 36.000 0.00 0.00 41.01 2.90
4192 6315 7.650104 GGAAAGTTGCATGATACTAGAGAGTAC 59.350 40.741 0.00 0.00 41.01 2.73
4193 6316 7.561722 AGGAAAGTTGCATGATACTAGAGAGTA 59.438 37.037 0.00 0.00 42.41 2.59
4194 6317 6.382570 AGGAAAGTTGCATGATACTAGAGAGT 59.617 38.462 0.00 0.00 39.92 3.24
4195 6318 6.815089 AGGAAAGTTGCATGATACTAGAGAG 58.185 40.000 0.00 0.00 0.00 3.20
4196 6319 6.798427 AGGAAAGTTGCATGATACTAGAGA 57.202 37.500 0.00 0.00 0.00 3.10
4197 6320 7.244166 CAAGGAAAGTTGCATGATACTAGAG 57.756 40.000 0.00 0.00 0.00 2.43
4414 6542 1.002468 GTTGTCAGTTGTGCAATCGCT 60.002 47.619 0.00 0.00 39.64 4.93
4476 6604 3.826157 CACAGATTAGGAACAGGCCAAAA 59.174 43.478 5.01 0.00 0.00 2.44
4515 6643 1.672363 CCAAAATAGATGAGCAGCGCA 59.328 47.619 11.47 0.00 0.00 6.09
4593 6721 1.546923 TCCTTGCTATGGACGAACGAA 59.453 47.619 0.14 0.00 0.00 3.85
4786 6915 1.133513 TGACCACCTGACTTGCCAAAT 60.134 47.619 0.00 0.00 0.00 2.32
4789 6921 0.465460 GTTGACCACCTGACTTGCCA 60.465 55.000 0.00 0.00 0.00 4.92
4790 6922 0.179018 AGTTGACCACCTGACTTGCC 60.179 55.000 0.00 0.00 0.00 4.52
4791 6923 0.947244 CAGTTGACCACCTGACTTGC 59.053 55.000 0.00 0.00 0.00 4.01
4792 6924 2.332063 ACAGTTGACCACCTGACTTG 57.668 50.000 1.53 0.00 32.93 3.16
4845 6990 7.344134 AGTAATTTTGAACCCCCTCTATACAC 58.656 38.462 0.00 0.00 0.00 2.90
4846 6991 7.519347 AGTAATTTTGAACCCCCTCTATACA 57.481 36.000 0.00 0.00 0.00 2.29
4849 7031 7.285340 AGAAGTAATTTTGAACCCCCTCTAT 57.715 36.000 0.00 0.00 0.00 1.98
4852 7034 7.450634 ACTTAAGAAGTAATTTTGAACCCCCTC 59.549 37.037 10.09 0.00 40.69 4.30
4924 7237 4.879295 ATCCCCCAAAATACAGTCATGA 57.121 40.909 0.00 0.00 0.00 3.07
4968 7283 3.360867 TGAACAGACCACACAACCAAAT 58.639 40.909 0.00 0.00 0.00 2.32
4991 7306 2.292016 CACACTACGCCCAATCAAACAA 59.708 45.455 0.00 0.00 0.00 2.83
5014 7329 4.345257 ACTCAGTCCACACAATACTGACTT 59.655 41.667 0.00 0.00 43.45 3.01
5015 7330 3.898123 ACTCAGTCCACACAATACTGACT 59.102 43.478 0.00 0.00 43.45 3.41
5016 7331 4.021894 AGACTCAGTCCACACAATACTGAC 60.022 45.833 0.00 0.00 43.45 3.51
5024 7376 0.390492 CTGCAGACTCAGTCCACACA 59.610 55.000 8.42 0.00 32.18 3.72
5025 7377 0.320247 CCTGCAGACTCAGTCCACAC 60.320 60.000 17.39 0.00 32.18 3.82
5026 7378 2.052779 CCTGCAGACTCAGTCCACA 58.947 57.895 17.39 0.00 32.18 4.17
5074 7426 5.584253 TTCTAGAGACATTCTACAGGCAC 57.416 43.478 0.00 0.00 37.36 5.01
5130 7482 3.954200 TGTGCAGCTCCATCTCAATTAA 58.046 40.909 0.00 0.00 0.00 1.40
5200 7565 2.601905 AGCTTCAAAGTTGCCCTGAAT 58.398 42.857 0.00 0.00 0.00 2.57
5307 7673 8.728337 TTCTTCACTTTCCTGATAAGATCATG 57.272 34.615 0.00 0.00 38.85 3.07
5336 7702 8.029642 AGAGAAATAAAAATACAGTGTCCGTG 57.970 34.615 0.00 0.00 0.00 4.94
5515 7886 0.111061 AGAGGTGCATGCAAGAACCA 59.889 50.000 24.58 0.00 35.01 3.67
5600 7971 7.933577 CAGAATTATTATCTGCCTACCACTCAA 59.066 37.037 0.00 0.00 38.03 3.02
5601 7972 7.445121 CAGAATTATTATCTGCCTACCACTCA 58.555 38.462 0.00 0.00 38.03 3.41
5602 7973 7.897575 CAGAATTATTATCTGCCTACCACTC 57.102 40.000 0.00 0.00 38.03 3.51
5612 7983 5.125097 GCATCCCTGGCAGAATTATTATCTG 59.875 44.000 17.94 0.00 45.65 2.90
5613 7984 5.014966 AGCATCCCTGGCAGAATTATTATCT 59.985 40.000 17.94 0.00 0.00 1.98
5614 7985 5.125097 CAGCATCCCTGGCAGAATTATTATC 59.875 44.000 17.94 0.00 37.93 1.75
5615 7986 5.014858 CAGCATCCCTGGCAGAATTATTAT 58.985 41.667 17.94 0.00 37.93 1.28
5616 7987 4.401022 CAGCATCCCTGGCAGAATTATTA 58.599 43.478 17.94 0.00 37.93 0.98
5617 7988 3.228453 CAGCATCCCTGGCAGAATTATT 58.772 45.455 17.94 0.00 37.93 1.40
5618 7989 2.872732 CAGCATCCCTGGCAGAATTAT 58.127 47.619 17.94 0.44 37.93 1.28
5619 7990 1.751733 GCAGCATCCCTGGCAGAATTA 60.752 52.381 17.94 0.00 42.03 1.40
5620 7991 1.041447 GCAGCATCCCTGGCAGAATT 61.041 55.000 17.94 0.00 42.03 2.17
5621 7992 1.455217 GCAGCATCCCTGGCAGAAT 60.455 57.895 17.94 6.29 42.03 2.40
5622 7993 2.044650 GCAGCATCCCTGGCAGAA 60.045 61.111 17.94 3.78 42.03 3.02
5623 7994 2.909549 TTGCAGCATCCCTGGCAGA 61.910 57.895 17.94 0.00 42.03 4.26
5624 7995 2.361992 TTGCAGCATCCCTGGCAG 60.362 61.111 7.75 7.75 42.03 4.85
5625 7996 2.677524 GTTGCAGCATCCCTGGCA 60.678 61.111 0.00 0.00 42.03 4.92
5626 7997 1.941999 GAAGTTGCAGCATCCCTGGC 61.942 60.000 2.55 0.00 42.03 4.85
5627 7998 1.318158 GGAAGTTGCAGCATCCCTGG 61.318 60.000 13.28 0.00 42.03 4.45
5628 7999 0.323178 AGGAAGTTGCAGCATCCCTG 60.323 55.000 19.57 0.00 44.67 4.45
5629 8000 0.323178 CAGGAAGTTGCAGCATCCCT 60.323 55.000 19.57 11.12 32.15 4.20
5630 8001 1.318158 CCAGGAAGTTGCAGCATCCC 61.318 60.000 19.57 9.12 32.15 3.85
5631 8002 1.318158 CCCAGGAAGTTGCAGCATCC 61.318 60.000 16.11 16.11 0.00 3.51
5632 8003 0.322816 TCCCAGGAAGTTGCAGCATC 60.323 55.000 2.55 0.00 0.00 3.91
5633 8004 0.323178 CTCCCAGGAAGTTGCAGCAT 60.323 55.000 2.55 0.00 0.00 3.79
5634 8005 1.073722 CTCCCAGGAAGTTGCAGCA 59.926 57.895 2.55 0.00 0.00 4.41
5635 8006 2.338785 GCTCCCAGGAAGTTGCAGC 61.339 63.158 0.00 0.00 0.00 5.25
5636 8007 0.538057 TTGCTCCCAGGAAGTTGCAG 60.538 55.000 0.00 0.00 0.00 4.41
5637 8008 0.538057 CTTGCTCCCAGGAAGTTGCA 60.538 55.000 0.00 0.00 38.63 4.08
5657 8028 4.595781 AGACAAACCCAGTACCACTAATCA 59.404 41.667 0.00 0.00 0.00 2.57
5678 8049 6.365520 TCACTGCCAGTATCACTAGAATAGA 58.634 40.000 0.00 0.00 42.77 1.98
5679 8050 6.641169 TCACTGCCAGTATCACTAGAATAG 57.359 41.667 0.00 0.00 46.50 1.73
5680 8051 7.945109 AGTATCACTGCCAGTATCACTAGAATA 59.055 37.037 0.00 0.00 0.00 1.75
5681 8052 6.780031 AGTATCACTGCCAGTATCACTAGAAT 59.220 38.462 0.00 0.00 0.00 2.40
5682 8053 6.039829 CAGTATCACTGCCAGTATCACTAGAA 59.960 42.308 0.00 0.00 39.62 2.10
5683 8054 5.532779 CAGTATCACTGCCAGTATCACTAGA 59.467 44.000 0.00 0.00 39.62 2.43
5684 8055 5.278709 CCAGTATCACTGCCAGTATCACTAG 60.279 48.000 0.00 0.00 44.63 2.57
5685 8056 4.584743 CCAGTATCACTGCCAGTATCACTA 59.415 45.833 0.00 0.00 44.63 2.74
5686 8057 3.386078 CCAGTATCACTGCCAGTATCACT 59.614 47.826 0.00 0.00 44.63 3.41
5687 8058 3.493350 CCCAGTATCACTGCCAGTATCAC 60.493 52.174 0.00 0.00 44.63 3.06
5688 8059 2.700371 CCCAGTATCACTGCCAGTATCA 59.300 50.000 0.00 0.00 44.63 2.15
5689 8060 2.700897 ACCCAGTATCACTGCCAGTATC 59.299 50.000 0.00 0.00 44.63 2.24
5690 8061 2.764269 ACCCAGTATCACTGCCAGTAT 58.236 47.619 0.00 0.00 44.63 2.12
5691 8062 2.247699 ACCCAGTATCACTGCCAGTA 57.752 50.000 0.00 0.00 44.63 2.74
5692 8063 1.362224 AACCCAGTATCACTGCCAGT 58.638 50.000 0.00 0.00 44.63 4.00
5693 8064 2.086869 CAAACCCAGTATCACTGCCAG 58.913 52.381 0.64 0.00 44.63 4.85
5694 8065 1.886222 GCAAACCCAGTATCACTGCCA 60.886 52.381 0.64 0.00 44.63 4.92
5695 8066 0.811281 GCAAACCCAGTATCACTGCC 59.189 55.000 0.64 0.00 44.63 4.85
5696 8067 1.826385 AGCAAACCCAGTATCACTGC 58.174 50.000 0.64 0.00 44.63 4.40
5697 8068 4.520492 AGAAAAGCAAACCCAGTATCACTG 59.480 41.667 0.00 0.00 45.53 3.66
5698 8069 4.520492 CAGAAAAGCAAACCCAGTATCACT 59.480 41.667 0.00 0.00 0.00 3.41
5699 8070 4.518970 TCAGAAAAGCAAACCCAGTATCAC 59.481 41.667 0.00 0.00 0.00 3.06
5700 8071 4.724399 TCAGAAAAGCAAACCCAGTATCA 58.276 39.130 0.00 0.00 0.00 2.15
5701 8072 5.904362 ATCAGAAAAGCAAACCCAGTATC 57.096 39.130 0.00 0.00 0.00 2.24
5702 8073 6.494835 AGAAATCAGAAAAGCAAACCCAGTAT 59.505 34.615 0.00 0.00 0.00 2.12
5703 8074 5.833131 AGAAATCAGAAAAGCAAACCCAGTA 59.167 36.000 0.00 0.00 0.00 2.74
5704 8075 4.651045 AGAAATCAGAAAAGCAAACCCAGT 59.349 37.500 0.00 0.00 0.00 4.00
5705 8076 5.205759 AGAAATCAGAAAAGCAAACCCAG 57.794 39.130 0.00 0.00 0.00 4.45
5706 8077 5.453198 GGAAGAAATCAGAAAAGCAAACCCA 60.453 40.000 0.00 0.00 0.00 4.51
5707 8078 4.991056 GGAAGAAATCAGAAAAGCAAACCC 59.009 41.667 0.00 0.00 0.00 4.11
5708 8079 5.600696 TGGAAGAAATCAGAAAAGCAAACC 58.399 37.500 0.00 0.00 0.00 3.27
5709 8080 7.538303 TTTGGAAGAAATCAGAAAAGCAAAC 57.462 32.000 0.00 0.00 0.00 2.93
5710 8081 8.735692 AATTTGGAAGAAATCAGAAAAGCAAA 57.264 26.923 0.00 0.00 0.00 3.68
5711 8082 9.829507 TTAATTTGGAAGAAATCAGAAAAGCAA 57.170 25.926 0.00 0.00 0.00 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.