Multiple sequence alignment - TraesCS6B01G064800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G064800 chr6B 100.000 3383 0 0 1 3383 42818350 42814968 0.000000e+00 6248
1 TraesCS6B01G064800 chr6B 83.813 278 34 9 406 675 42782511 42782237 1.560000e-63 254
2 TraesCS6B01G064800 chr6B 88.462 208 21 3 765 971 42782103 42781898 7.250000e-62 248
3 TraesCS6B01G064800 chrUn 91.749 2436 140 17 970 3383 93841767 93839371 0.000000e+00 3328
4 TraesCS6B01G064800 chrUn 83.218 578 84 9 1486 2052 337338636 337338061 5.000000e-143 518
5 TraesCS6B01G064800 chrUn 87.500 232 21 7 745 971 93810080 93809852 9.310000e-66 261
6 TraesCS6B01G064800 chr6A 93.323 1887 97 15 970 2843 24427638 24425768 0.000000e+00 2760
7 TraesCS6B01G064800 chr6A 88.028 426 34 4 2974 3383 24425767 24425343 3.920000e-134 488
8 TraesCS6B01G064800 chr6A 90.169 356 32 2 1 355 555581266 555581619 8.550000e-126 460
9 TraesCS6B01G064800 chr6A 89.067 375 33 5 1 370 599216001 599215630 3.080000e-125 459
10 TraesCS6B01G064800 chr1B 93.188 367 23 2 1 366 339077809 339077444 3.840000e-149 538
11 TraesCS6B01G064800 chr1B 93.824 340 19 2 28 366 338884629 338884291 8.370000e-141 510
12 TraesCS6B01G064800 chr1B 94.260 331 17 2 28 357 339904604 339904933 3.900000e-139 505
13 TraesCS6B01G064800 chr5A 92.135 356 23 3 1 353 601238878 601239231 6.520000e-137 497
14 TraesCS6B01G064800 chr6D 94.393 321 17 1 34 353 336835630 336835310 3.030000e-135 492
15 TraesCS6B01G064800 chr2A 90.361 332 32 0 22 353 398762704 398762373 1.440000e-118 436
16 TraesCS6B01G064800 chr4A 88.827 358 35 3 1 353 207387888 207388245 5.180000e-118 435


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G064800 chr6B 42814968 42818350 3382 True 6248 6248 100.0000 1 3383 1 chr6B.!!$R1 3382
1 TraesCS6B01G064800 chr6B 42781898 42782511 613 True 251 254 86.1375 406 971 2 chr6B.!!$R2 565
2 TraesCS6B01G064800 chrUn 93839371 93841767 2396 True 3328 3328 91.7490 970 3383 1 chrUn.!!$R2 2413
3 TraesCS6B01G064800 chrUn 337338061 337338636 575 True 518 518 83.2180 1486 2052 1 chrUn.!!$R3 566
4 TraesCS6B01G064800 chr6A 24425343 24427638 2295 True 1624 2760 90.6755 970 3383 2 chr6A.!!$R2 2413

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
394 395 0.038744 ACCTCTCTTGGTTGCCCATG 59.961 55.0 0.0 0.0 41.49 3.66 F
395 396 0.329261 CCTCTCTTGGTTGCCCATGA 59.671 55.0 0.0 0.0 41.49 3.07 F
1877 1953 0.475906 ATTCAGGCTGATAGGGTGGC 59.524 55.0 19.5 0.0 0.00 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1849 1925 0.250234 TCAGCCTGAATGTCCCTTCG 59.750 55.0 0.0 0.0 0.0 3.79 R
1905 1981 0.808125 CTAGATCGCCCTCATCCTCG 59.192 60.0 0.0 0.0 0.0 4.63 R
3122 3223 0.034670 AAGGCACAGGAGATGGAAGC 60.035 55.0 0.0 0.0 0.0 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 55 9.745880 TGTAGCACTAAGTACTCTTAATTATGC 57.254 33.333 0.00 0.00 35.98 3.14
55 56 9.968870 GTAGCACTAAGTACTCTTAATTATGCT 57.031 33.333 0.00 6.25 40.31 3.79
57 58 8.919145 AGCACTAAGTACTCTTAATTATGCTCT 58.081 33.333 0.00 0.00 37.00 4.09
64 65 9.594936 AGTACTCTTAATTATGCTCTATCCTGT 57.405 33.333 0.00 0.00 0.00 4.00
65 66 9.632807 GTACTCTTAATTATGCTCTATCCTGTG 57.367 37.037 0.00 0.00 0.00 3.66
66 67 8.484214 ACTCTTAATTATGCTCTATCCTGTGA 57.516 34.615 0.00 0.00 0.00 3.58
67 68 9.099071 ACTCTTAATTATGCTCTATCCTGTGAT 57.901 33.333 0.00 0.00 34.87 3.06
71 72 9.944376 TTAATTATGCTCTATCCTGTGATAACC 57.056 33.333 0.00 0.00 33.13 2.85
72 73 7.805083 ATTATGCTCTATCCTGTGATAACCT 57.195 36.000 0.00 0.00 33.13 3.50
73 74 8.901472 ATTATGCTCTATCCTGTGATAACCTA 57.099 34.615 0.00 0.00 33.13 3.08
74 75 8.901472 TTATGCTCTATCCTGTGATAACCTAT 57.099 34.615 0.00 0.00 33.13 2.57
75 76 6.596309 TGCTCTATCCTGTGATAACCTATG 57.404 41.667 0.00 0.00 33.13 2.23
76 77 5.481824 TGCTCTATCCTGTGATAACCTATGG 59.518 44.000 0.00 0.00 33.13 2.74
77 78 5.482175 GCTCTATCCTGTGATAACCTATGGT 59.518 44.000 0.00 0.00 33.13 3.55
79 80 7.473511 GCTCTATCCTGTGATAACCTATGGTTT 60.474 40.741 7.32 0.00 45.96 3.27
80 81 7.735917 TCTATCCTGTGATAACCTATGGTTTG 58.264 38.462 7.32 0.00 45.96 2.93
81 82 4.523083 TCCTGTGATAACCTATGGTTTGC 58.477 43.478 7.32 1.58 44.33 3.68
82 83 4.227300 TCCTGTGATAACCTATGGTTTGCT 59.773 41.667 7.32 0.00 44.33 3.91
83 84 4.949856 CCTGTGATAACCTATGGTTTGCTT 59.050 41.667 7.32 0.00 44.33 3.91
84 85 5.418840 CCTGTGATAACCTATGGTTTGCTTT 59.581 40.000 7.32 0.00 44.33 3.51
85 86 6.071391 CCTGTGATAACCTATGGTTTGCTTTT 60.071 38.462 7.32 0.00 44.33 2.27
86 87 6.686630 TGTGATAACCTATGGTTTGCTTTTG 58.313 36.000 7.32 0.00 44.33 2.44
87 88 6.099341 GTGATAACCTATGGTTTGCTTTTGG 58.901 40.000 7.32 0.00 44.33 3.28
88 89 6.013379 TGATAACCTATGGTTTGCTTTTGGA 58.987 36.000 7.32 0.00 44.33 3.53
89 90 4.600692 AACCTATGGTTTGCTTTTGGAC 57.399 40.909 0.00 0.00 44.33 4.02
90 91 2.897326 ACCTATGGTTTGCTTTTGGACC 59.103 45.455 0.00 0.00 27.29 4.46
91 92 3.165071 CCTATGGTTTGCTTTTGGACCT 58.835 45.455 0.00 0.00 33.33 3.85
92 93 3.193479 CCTATGGTTTGCTTTTGGACCTC 59.807 47.826 0.00 0.00 33.33 3.85
93 94 2.452600 TGGTTTGCTTTTGGACCTCT 57.547 45.000 0.00 0.00 33.33 3.69
94 95 2.745968 TGGTTTGCTTTTGGACCTCTT 58.254 42.857 0.00 0.00 33.33 2.85
95 96 2.430332 TGGTTTGCTTTTGGACCTCTTG 59.570 45.455 0.00 0.00 33.33 3.02
96 97 2.430694 GGTTTGCTTTTGGACCTCTTGT 59.569 45.455 0.00 0.00 0.00 3.16
97 98 3.490933 GGTTTGCTTTTGGACCTCTTGTC 60.491 47.826 0.00 0.00 43.67 3.18
98 99 2.727123 TGCTTTTGGACCTCTTGTCA 57.273 45.000 0.00 0.00 46.38 3.58
99 100 2.297701 TGCTTTTGGACCTCTTGTCAC 58.702 47.619 0.00 0.00 46.38 3.67
100 101 2.297701 GCTTTTGGACCTCTTGTCACA 58.702 47.619 0.00 0.00 46.38 3.58
101 102 2.887152 GCTTTTGGACCTCTTGTCACAT 59.113 45.455 0.00 0.00 46.38 3.21
102 103 3.319122 GCTTTTGGACCTCTTGTCACATT 59.681 43.478 0.00 0.00 46.38 2.71
103 104 4.557496 GCTTTTGGACCTCTTGTCACATTC 60.557 45.833 0.00 0.00 46.38 2.67
104 105 4.437682 TTTGGACCTCTTGTCACATTCT 57.562 40.909 0.00 0.00 46.38 2.40
105 106 4.437682 TTGGACCTCTTGTCACATTCTT 57.562 40.909 0.00 0.00 46.38 2.52
106 107 4.437682 TGGACCTCTTGTCACATTCTTT 57.562 40.909 0.00 0.00 46.38 2.52
107 108 4.792068 TGGACCTCTTGTCACATTCTTTT 58.208 39.130 0.00 0.00 46.38 2.27
108 109 4.821805 TGGACCTCTTGTCACATTCTTTTC 59.178 41.667 0.00 0.00 46.38 2.29
109 110 4.821805 GGACCTCTTGTCACATTCTTTTCA 59.178 41.667 0.00 0.00 46.38 2.69
110 111 5.299279 GGACCTCTTGTCACATTCTTTTCAA 59.701 40.000 0.00 0.00 46.38 2.69
111 112 6.382869 ACCTCTTGTCACATTCTTTTCAAG 57.617 37.500 0.00 0.00 35.21 3.02
112 113 6.122277 ACCTCTTGTCACATTCTTTTCAAGA 58.878 36.000 0.00 0.00 38.84 3.02
113 114 6.038714 ACCTCTTGTCACATTCTTTTCAAGAC 59.961 38.462 0.00 0.00 37.13 3.01
114 115 6.048073 TCTTGTCACATTCTTTTCAAGACG 57.952 37.500 0.00 0.00 37.13 4.18
115 116 4.209452 TGTCACATTCTTTTCAAGACGC 57.791 40.909 0.00 0.00 37.23 5.19
116 117 3.876914 TGTCACATTCTTTTCAAGACGCT 59.123 39.130 0.00 0.00 37.23 5.07
117 118 5.053811 TGTCACATTCTTTTCAAGACGCTA 58.946 37.500 0.00 0.00 37.23 4.26
118 119 5.525745 TGTCACATTCTTTTCAAGACGCTAA 59.474 36.000 0.00 0.00 37.23 3.09
119 120 6.037720 TGTCACATTCTTTTCAAGACGCTAAA 59.962 34.615 0.00 0.00 37.23 1.85
120 121 6.357240 GTCACATTCTTTTCAAGACGCTAAAC 59.643 38.462 0.00 0.00 37.23 2.01
121 122 5.625311 CACATTCTTTTCAAGACGCTAAACC 59.375 40.000 0.00 0.00 37.23 3.27
122 123 5.531287 ACATTCTTTTCAAGACGCTAAACCT 59.469 36.000 0.00 0.00 37.23 3.50
123 124 6.708949 ACATTCTTTTCAAGACGCTAAACCTA 59.291 34.615 0.00 0.00 37.23 3.08
124 125 7.390718 ACATTCTTTTCAAGACGCTAAACCTAT 59.609 33.333 0.00 0.00 37.23 2.57
125 126 6.721571 TCTTTTCAAGACGCTAAACCTATG 57.278 37.500 0.00 0.00 31.20 2.23
126 127 6.228258 TCTTTTCAAGACGCTAAACCTATGT 58.772 36.000 0.00 0.00 31.20 2.29
127 128 6.708949 TCTTTTCAAGACGCTAAACCTATGTT 59.291 34.615 0.00 0.00 31.65 2.71
128 129 5.856126 TTCAAGACGCTAAACCTATGTTG 57.144 39.130 0.00 0.00 34.13 3.33
129 130 4.890088 TCAAGACGCTAAACCTATGTTGT 58.110 39.130 0.00 0.00 34.13 3.32
130 131 5.302360 TCAAGACGCTAAACCTATGTTGTT 58.698 37.500 0.00 0.00 34.13 2.83
131 132 5.178623 TCAAGACGCTAAACCTATGTTGTTG 59.821 40.000 0.00 0.00 34.13 3.33
132 133 3.435671 AGACGCTAAACCTATGTTGTTGC 59.564 43.478 0.00 0.00 34.13 4.17
133 134 3.408634 ACGCTAAACCTATGTTGTTGCT 58.591 40.909 0.00 0.00 34.13 3.91
134 135 3.818773 ACGCTAAACCTATGTTGTTGCTT 59.181 39.130 0.00 0.00 34.13 3.91
135 136 4.998672 ACGCTAAACCTATGTTGTTGCTTA 59.001 37.500 0.00 0.00 34.13 3.09
136 137 5.646360 ACGCTAAACCTATGTTGTTGCTTAT 59.354 36.000 0.00 0.00 34.13 1.73
137 138 5.965334 CGCTAAACCTATGTTGTTGCTTATG 59.035 40.000 0.00 0.00 34.13 1.90
138 139 6.403200 CGCTAAACCTATGTTGTTGCTTATGT 60.403 38.462 0.00 0.00 34.13 2.29
139 140 7.312899 GCTAAACCTATGTTGTTGCTTATGTT 58.687 34.615 0.00 0.00 34.13 2.71
140 141 8.455682 GCTAAACCTATGTTGTTGCTTATGTTA 58.544 33.333 0.00 0.00 34.13 2.41
144 145 9.638239 AACCTATGTTGTTGCTTATGTTAAATG 57.362 29.630 0.00 0.00 32.13 2.32
145 146 7.759433 ACCTATGTTGTTGCTTATGTTAAATGC 59.241 33.333 0.00 0.00 0.00 3.56
146 147 7.758980 CCTATGTTGTTGCTTATGTTAAATGCA 59.241 33.333 0.00 0.00 0.00 3.96
147 148 6.761731 TGTTGTTGCTTATGTTAAATGCAC 57.238 33.333 0.00 0.00 33.13 4.57
148 149 6.511416 TGTTGTTGCTTATGTTAAATGCACT 58.489 32.000 0.00 0.00 33.13 4.40
149 150 7.652727 TGTTGTTGCTTATGTTAAATGCACTA 58.347 30.769 0.00 0.00 33.13 2.74
150 151 8.303156 TGTTGTTGCTTATGTTAAATGCACTAT 58.697 29.630 0.00 0.00 33.13 2.12
151 152 9.139174 GTTGTTGCTTATGTTAAATGCACTATT 57.861 29.630 0.00 0.00 33.13 1.73
152 153 8.909708 TGTTGCTTATGTTAAATGCACTATTC 57.090 30.769 0.00 0.00 33.13 1.75
153 154 8.739039 TGTTGCTTATGTTAAATGCACTATTCT 58.261 29.630 0.00 0.00 33.13 2.40
154 155 9.226345 GTTGCTTATGTTAAATGCACTATTCTC 57.774 33.333 0.00 0.00 33.13 2.87
155 156 8.504812 TGCTTATGTTAAATGCACTATTCTCA 57.495 30.769 0.00 0.00 0.00 3.27
156 157 8.615211 TGCTTATGTTAAATGCACTATTCTCAG 58.385 33.333 0.00 0.00 0.00 3.35
157 158 8.616076 GCTTATGTTAAATGCACTATTCTCAGT 58.384 33.333 0.00 0.00 0.00 3.41
159 160 9.665719 TTATGTTAAATGCACTATTCTCAGTCA 57.334 29.630 0.00 0.00 0.00 3.41
160 161 7.601073 TGTTAAATGCACTATTCTCAGTCAG 57.399 36.000 0.00 0.00 0.00 3.51
161 162 7.386059 TGTTAAATGCACTATTCTCAGTCAGA 58.614 34.615 0.00 0.00 0.00 3.27
162 163 8.043113 TGTTAAATGCACTATTCTCAGTCAGAT 58.957 33.333 0.00 0.00 0.00 2.90
163 164 9.534565 GTTAAATGCACTATTCTCAGTCAGATA 57.465 33.333 0.00 0.00 0.00 1.98
166 167 9.624373 AAATGCACTATTCTCAGTCAGATATTT 57.376 29.630 0.00 0.00 0.00 1.40
167 168 8.830201 ATGCACTATTCTCAGTCAGATATTTC 57.170 34.615 0.00 0.00 0.00 2.17
168 169 7.785033 TGCACTATTCTCAGTCAGATATTTCA 58.215 34.615 0.00 0.00 0.00 2.69
169 170 8.427276 TGCACTATTCTCAGTCAGATATTTCAT 58.573 33.333 0.00 0.00 0.00 2.57
170 171 8.710551 GCACTATTCTCAGTCAGATATTTCATG 58.289 37.037 0.00 0.00 0.00 3.07
171 172 9.761504 CACTATTCTCAGTCAGATATTTCATGT 57.238 33.333 0.00 0.00 0.00 3.21
172 173 9.979578 ACTATTCTCAGTCAGATATTTCATGTC 57.020 33.333 0.00 0.00 0.00 3.06
176 177 8.986929 TCTCAGTCAGATATTTCATGTCTAGA 57.013 34.615 0.00 0.00 0.00 2.43
177 178 9.585369 TCTCAGTCAGATATTTCATGTCTAGAT 57.415 33.333 0.00 0.00 0.00 1.98
178 179 9.844790 CTCAGTCAGATATTTCATGTCTAGATC 57.155 37.037 0.00 0.00 0.00 2.75
179 180 8.801299 TCAGTCAGATATTTCATGTCTAGATCC 58.199 37.037 0.00 0.00 0.00 3.36
180 181 8.583296 CAGTCAGATATTTCATGTCTAGATCCA 58.417 37.037 0.00 0.00 0.00 3.41
181 182 9.324008 AGTCAGATATTTCATGTCTAGATCCAT 57.676 33.333 0.00 0.00 0.00 3.41
188 189 5.426689 TCATGTCTAGATCCATAATGGGC 57.573 43.478 0.00 0.00 38.32 5.36
189 190 5.096521 TCATGTCTAGATCCATAATGGGCT 58.903 41.667 0.00 0.00 38.32 5.19
190 191 5.549228 TCATGTCTAGATCCATAATGGGCTT 59.451 40.000 0.00 0.00 38.32 4.35
191 192 5.912149 TGTCTAGATCCATAATGGGCTTT 57.088 39.130 0.00 0.00 38.32 3.51
192 193 5.869579 TGTCTAGATCCATAATGGGCTTTC 58.130 41.667 0.00 0.00 38.32 2.62
193 194 5.608437 TGTCTAGATCCATAATGGGCTTTCT 59.392 40.000 0.00 0.00 38.32 2.52
194 195 6.169800 GTCTAGATCCATAATGGGCTTTCTC 58.830 44.000 0.00 0.00 38.32 2.87
195 196 6.013812 GTCTAGATCCATAATGGGCTTTCTCT 60.014 42.308 0.00 0.00 38.32 3.10
196 197 4.983053 AGATCCATAATGGGCTTTCTCTG 58.017 43.478 0.00 0.00 38.32 3.35
197 198 4.414846 AGATCCATAATGGGCTTTCTCTGT 59.585 41.667 0.00 0.00 38.32 3.41
198 199 5.608437 AGATCCATAATGGGCTTTCTCTGTA 59.392 40.000 0.00 0.00 38.32 2.74
199 200 5.912149 TCCATAATGGGCTTTCTCTGTAT 57.088 39.130 0.00 0.00 38.32 2.29
200 201 7.459125 AGATCCATAATGGGCTTTCTCTGTATA 59.541 37.037 0.00 0.00 38.32 1.47
201 202 7.574021 TCCATAATGGGCTTTCTCTGTATAT 57.426 36.000 0.00 0.00 38.32 0.86
202 203 8.679344 TCCATAATGGGCTTTCTCTGTATATA 57.321 34.615 0.00 0.00 38.32 0.86
203 204 9.284131 TCCATAATGGGCTTTCTCTGTATATAT 57.716 33.333 0.00 0.00 38.32 0.86
253 254 8.472683 TTTAATTAAAGCAATCATCCCAAACG 57.527 30.769 6.54 0.00 0.00 3.60
254 255 2.368655 AAAGCAATCATCCCAAACGC 57.631 45.000 0.00 0.00 0.00 4.84
255 256 1.549203 AAGCAATCATCCCAAACGCT 58.451 45.000 0.00 0.00 0.00 5.07
256 257 2.418368 AGCAATCATCCCAAACGCTA 57.582 45.000 0.00 0.00 0.00 4.26
257 258 2.292267 AGCAATCATCCCAAACGCTAG 58.708 47.619 0.00 0.00 0.00 3.42
258 259 2.017049 GCAATCATCCCAAACGCTAGT 58.983 47.619 0.00 0.00 0.00 2.57
259 260 2.423538 GCAATCATCCCAAACGCTAGTT 59.576 45.455 0.00 0.00 43.50 2.24
260 261 3.625764 GCAATCATCCCAAACGCTAGTTA 59.374 43.478 0.00 0.00 40.18 2.24
261 262 4.260784 GCAATCATCCCAAACGCTAGTTAG 60.261 45.833 0.00 0.00 40.18 2.34
262 263 5.116180 CAATCATCCCAAACGCTAGTTAGA 58.884 41.667 0.00 0.00 40.18 2.10
263 264 4.811969 TCATCCCAAACGCTAGTTAGAA 57.188 40.909 0.00 0.00 40.18 2.10
264 265 5.353394 TCATCCCAAACGCTAGTTAGAAT 57.647 39.130 0.00 0.00 40.18 2.40
265 266 6.474140 TCATCCCAAACGCTAGTTAGAATA 57.526 37.500 0.00 0.00 40.18 1.75
266 267 6.513180 TCATCCCAAACGCTAGTTAGAATAG 58.487 40.000 0.00 0.00 40.18 1.73
267 268 6.322969 TCATCCCAAACGCTAGTTAGAATAGA 59.677 38.462 0.00 0.00 40.18 1.98
268 269 6.534475 TCCCAAACGCTAGTTAGAATAGAA 57.466 37.500 0.00 0.00 40.18 2.10
269 270 6.938507 TCCCAAACGCTAGTTAGAATAGAAA 58.061 36.000 0.00 0.00 40.18 2.52
270 271 7.562135 TCCCAAACGCTAGTTAGAATAGAAAT 58.438 34.615 0.00 0.00 40.18 2.17
271 272 7.709613 TCCCAAACGCTAGTTAGAATAGAAATC 59.290 37.037 0.00 0.00 40.18 2.17
272 273 7.306632 CCCAAACGCTAGTTAGAATAGAAATCG 60.307 40.741 0.00 0.00 40.18 3.34
273 274 7.306632 CCAAACGCTAGTTAGAATAGAAATCGG 60.307 40.741 0.00 0.00 40.18 4.18
274 275 6.388435 ACGCTAGTTAGAATAGAAATCGGT 57.612 37.500 0.00 0.00 0.00 4.69
275 276 6.207213 ACGCTAGTTAGAATAGAAATCGGTG 58.793 40.000 0.00 0.00 0.00 4.94
276 277 6.183360 ACGCTAGTTAGAATAGAAATCGGTGT 60.183 38.462 0.00 0.00 0.00 4.16
277 278 6.696148 CGCTAGTTAGAATAGAAATCGGTGTT 59.304 38.462 0.00 0.00 0.00 3.32
278 279 7.859377 CGCTAGTTAGAATAGAAATCGGTGTTA 59.141 37.037 0.00 0.00 0.00 2.41
279 280 9.525409 GCTAGTTAGAATAGAAATCGGTGTTAA 57.475 33.333 0.00 0.00 0.00 2.01
282 283 9.379791 AGTTAGAATAGAAATCGGTGTTAAAGG 57.620 33.333 0.00 0.00 0.00 3.11
283 284 8.610035 GTTAGAATAGAAATCGGTGTTAAAGGG 58.390 37.037 0.00 0.00 0.00 3.95
284 285 6.120220 AGAATAGAAATCGGTGTTAAAGGGG 58.880 40.000 0.00 0.00 0.00 4.79
285 286 2.443416 AGAAATCGGTGTTAAAGGGGC 58.557 47.619 0.00 0.00 0.00 5.80
286 287 1.131693 GAAATCGGTGTTAAAGGGGCG 59.868 52.381 0.00 0.00 0.00 6.13
287 288 0.325602 AATCGGTGTTAAAGGGGCGA 59.674 50.000 0.00 0.00 0.00 5.54
288 289 0.392060 ATCGGTGTTAAAGGGGCGAC 60.392 55.000 0.00 0.00 0.00 5.19
289 290 1.004200 CGGTGTTAAAGGGGCGACT 60.004 57.895 0.00 0.00 0.00 4.18
290 291 0.247185 CGGTGTTAAAGGGGCGACTA 59.753 55.000 0.00 0.00 0.00 2.59
291 292 1.730501 GGTGTTAAAGGGGCGACTAC 58.269 55.000 0.00 0.00 0.00 2.73
292 293 1.002315 GGTGTTAAAGGGGCGACTACA 59.998 52.381 0.00 0.00 0.00 2.74
293 294 2.550639 GGTGTTAAAGGGGCGACTACAA 60.551 50.000 0.00 0.00 0.00 2.41
294 295 2.481568 GTGTTAAAGGGGCGACTACAAC 59.518 50.000 0.00 0.00 0.00 3.32
295 296 2.369532 TGTTAAAGGGGCGACTACAACT 59.630 45.455 0.00 0.00 0.00 3.16
296 297 3.577848 TGTTAAAGGGGCGACTACAACTA 59.422 43.478 0.00 0.00 0.00 2.24
297 298 4.179298 GTTAAAGGGGCGACTACAACTAG 58.821 47.826 0.00 0.00 0.00 2.57
298 299 1.192428 AAGGGGCGACTACAACTAGG 58.808 55.000 0.00 0.00 0.00 3.02
299 300 1.143401 GGGGCGACTACAACTAGGC 59.857 63.158 0.00 0.00 0.00 3.93
300 301 1.610554 GGGGCGACTACAACTAGGCA 61.611 60.000 0.00 0.00 0.00 4.75
301 302 0.459759 GGGCGACTACAACTAGGCAC 60.460 60.000 0.00 0.00 0.00 5.01
302 303 0.459759 GGCGACTACAACTAGGCACC 60.460 60.000 0.00 0.00 0.00 5.01
303 304 0.801067 GCGACTACAACTAGGCACCG 60.801 60.000 0.00 0.00 0.00 4.94
304 305 0.801067 CGACTACAACTAGGCACCGC 60.801 60.000 0.00 0.00 0.00 5.68
320 321 4.120755 GCCCAGCTCCCCCTCAAG 62.121 72.222 0.00 0.00 0.00 3.02
321 322 2.285668 CCCAGCTCCCCCTCAAGA 60.286 66.667 0.00 0.00 0.00 3.02
322 323 2.373707 CCCAGCTCCCCCTCAAGAG 61.374 68.421 0.00 0.00 0.00 2.85
331 332 4.785453 CCTCAAGAGGCGGGCCAC 62.785 72.222 12.97 5.66 42.44 5.01
352 353 4.388499 CGCGCCCCAACACCTAGT 62.388 66.667 0.00 0.00 0.00 2.57
353 354 2.983791 GCGCCCCAACACCTAGTA 59.016 61.111 0.00 0.00 0.00 1.82
354 355 1.153429 GCGCCCCAACACCTAGTAG 60.153 63.158 0.00 0.00 0.00 2.57
355 356 1.610554 GCGCCCCAACACCTAGTAGA 61.611 60.000 0.00 0.00 0.00 2.59
356 357 1.120530 CGCCCCAACACCTAGTAGAT 58.879 55.000 0.00 0.00 0.00 1.98
357 358 2.313317 CGCCCCAACACCTAGTAGATA 58.687 52.381 0.00 0.00 0.00 1.98
358 359 2.897969 CGCCCCAACACCTAGTAGATAT 59.102 50.000 0.00 0.00 0.00 1.63
359 360 4.084287 CGCCCCAACACCTAGTAGATATA 58.916 47.826 0.00 0.00 0.00 0.86
360 361 4.710375 CGCCCCAACACCTAGTAGATATAT 59.290 45.833 0.00 0.00 0.00 0.86
361 362 5.889853 CGCCCCAACACCTAGTAGATATATA 59.110 44.000 0.00 0.00 0.00 0.86
362 363 6.183360 CGCCCCAACACCTAGTAGATATATAC 60.183 46.154 0.00 0.00 0.00 1.47
363 364 6.666546 GCCCCAACACCTAGTAGATATATACA 59.333 42.308 10.03 0.00 0.00 2.29
364 365 7.179694 GCCCCAACACCTAGTAGATATATACAA 59.820 40.741 10.03 0.00 0.00 2.41
365 366 8.750298 CCCCAACACCTAGTAGATATATACAAG 58.250 40.741 10.03 1.02 0.00 3.16
366 367 9.529823 CCCAACACCTAGTAGATATATACAAGA 57.470 37.037 10.03 0.00 0.00 3.02
383 384 9.821240 ATATACAAGATGTGATAGACCTCTCTT 57.179 33.333 0.00 0.00 28.89 2.85
384 385 6.219417 ACAAGATGTGATAGACCTCTCTTG 57.781 41.667 7.61 7.61 38.87 3.02
385 386 5.128499 ACAAGATGTGATAGACCTCTCTTGG 59.872 44.000 12.42 0.00 38.10 3.61
386 387 4.877773 AGATGTGATAGACCTCTCTTGGT 58.122 43.478 0.00 0.00 44.10 3.67
387 388 5.276440 AGATGTGATAGACCTCTCTTGGTT 58.724 41.667 0.00 0.00 41.00 3.67
388 389 4.808414 TGTGATAGACCTCTCTTGGTTG 57.192 45.455 0.00 0.00 41.00 3.77
389 390 3.055819 TGTGATAGACCTCTCTTGGTTGC 60.056 47.826 0.00 0.00 41.00 4.17
390 391 2.501723 TGATAGACCTCTCTTGGTTGCC 59.498 50.000 0.00 0.00 41.00 4.52
391 392 1.276622 TAGACCTCTCTTGGTTGCCC 58.723 55.000 0.00 0.00 41.00 5.36
392 393 0.768221 AGACCTCTCTTGGTTGCCCA 60.768 55.000 0.00 0.00 41.00 5.36
393 394 0.329596 GACCTCTCTTGGTTGCCCAT 59.670 55.000 0.00 0.00 41.49 4.00
394 395 0.038744 ACCTCTCTTGGTTGCCCATG 59.961 55.000 0.00 0.00 41.49 3.66
395 396 0.329261 CCTCTCTTGGTTGCCCATGA 59.671 55.000 0.00 0.00 41.49 3.07
399 400 2.905415 TCTTGGTTGCCCATGAGATT 57.095 45.000 0.00 0.00 41.49 2.40
401 402 4.314522 TCTTGGTTGCCCATGAGATTAA 57.685 40.909 0.00 0.00 41.49 1.40
402 403 4.671831 TCTTGGTTGCCCATGAGATTAAA 58.328 39.130 0.00 0.00 41.49 1.52
403 404 5.083122 TCTTGGTTGCCCATGAGATTAAAA 58.917 37.500 0.00 0.00 41.49 1.52
404 405 4.799564 TGGTTGCCCATGAGATTAAAAC 57.200 40.909 0.00 0.00 35.17 2.43
595 599 6.768078 AGTATTTTATTTCAGTTGCCGTACG 58.232 36.000 8.69 8.69 0.00 3.67
614 618 2.891580 ACGGTCGCATATAAGATGGACT 59.108 45.455 0.00 0.00 0.00 3.85
617 621 5.096169 CGGTCGCATATAAGATGGACTAAG 58.904 45.833 0.00 0.00 0.00 2.18
619 623 5.185249 GGTCGCATATAAGATGGACTAAGGA 59.815 44.000 0.00 0.00 0.00 3.36
630 635 6.190587 AGATGGACTAAGGAAGAAATTTGGG 58.809 40.000 0.00 0.00 0.00 4.12
632 637 5.959512 TGGACTAAGGAAGAAATTTGGGAA 58.040 37.500 0.00 0.00 0.00 3.97
639 644 6.499106 AGGAAGAAATTTGGGAACATTTGT 57.501 33.333 0.00 0.00 42.32 2.83
645 650 9.625747 AAGAAATTTGGGAACATTTGTTGTATT 57.374 25.926 0.00 0.00 42.32 1.89
647 652 8.744568 AAATTTGGGAACATTTGTTGTATTGT 57.255 26.923 0.00 0.00 42.32 2.71
649 654 7.545362 TTTGGGAACATTTGTTGTATTGTTG 57.455 32.000 0.00 0.00 42.32 3.33
650 655 5.053145 TGGGAACATTTGTTGTATTGTTGC 58.947 37.500 0.00 0.00 37.68 4.17
652 657 5.525378 GGGAACATTTGTTGTATTGTTGCAA 59.475 36.000 0.00 0.00 40.75 4.08
701 728 7.599630 TGCAAAATTTCTCCATGAATTAAGC 57.400 32.000 0.00 1.40 34.24 3.09
704 731 8.724229 GCAAAATTTCTCCATGAATTAAGCTTT 58.276 29.630 3.20 0.00 34.24 3.51
723 750 8.885494 AAGCTTTGAAAATTGCATAAGTTACA 57.115 26.923 0.00 0.00 0.00 2.41
724 751 8.298030 AGCTTTGAAAATTGCATAAGTTACAC 57.702 30.769 0.00 0.00 0.00 2.90
737 764 8.661257 TGCATAAGTTACACATTGTGTATACAC 58.339 33.333 25.84 25.99 46.36 2.90
794 847 9.545928 AAATATCATGGTAGAGATCTCTAAGCT 57.454 33.333 29.72 16.09 43.12 3.74
811 864 7.708322 TCTCTAAGCTGTGCACTCTAATTAATG 59.292 37.037 19.41 6.10 0.00 1.90
814 867 4.878397 AGCTGTGCACTCTAATTAATGTCC 59.122 41.667 19.41 0.00 0.00 4.02
868 921 6.058183 AGCATATTGGTGGAATCTTCTACAC 58.942 40.000 8.43 0.97 40.05 2.90
875 928 9.614792 ATTGGTGGAATCTTCTACACTATAAAC 57.385 33.333 8.43 0.00 40.05 2.01
876 929 7.562135 TGGTGGAATCTTCTACACTATAAACC 58.438 38.462 8.43 0.00 40.05 3.27
889 942 5.998981 ACACTATAAACCGAACCATTGACAA 59.001 36.000 0.00 0.00 0.00 3.18
899 952 5.293079 CCGAACCATTGACAAATGTGTTTTT 59.707 36.000 0.00 0.00 41.46 1.94
900 953 6.410038 CGAACCATTGACAAATGTGTTTTTC 58.590 36.000 0.00 0.00 41.46 2.29
901 954 5.964887 ACCATTGACAAATGTGTTTTTCG 57.035 34.783 0.00 0.00 41.46 3.46
902 955 4.269844 ACCATTGACAAATGTGTTTTTCGC 59.730 37.500 0.00 0.00 41.46 4.70
964 1017 6.158598 GTGCTTGATTTGATTTGGTGTGTAT 58.841 36.000 0.00 0.00 0.00 2.29
968 1021 7.489113 GCTTGATTTGATTTGGTGTGTATAAGG 59.511 37.037 0.00 0.00 0.00 2.69
1103 1159 2.046892 GCTGCGCCTCTTCCTCAA 60.047 61.111 4.18 0.00 0.00 3.02
1111 1167 3.665675 CTCTTCCTCAACCCGCCGG 62.666 68.421 0.00 0.00 0.00 6.13
1207 1263 3.411517 AGTTCCCGGCCATGGAGG 61.412 66.667 18.40 17.62 41.84 4.30
1374 1430 4.475135 GCCCTCAACGCCCTCCTC 62.475 72.222 0.00 0.00 0.00 3.71
1572 1637 2.203294 ACGTTTGGCACCCTGGTC 60.203 61.111 0.00 0.00 0.00 4.02
1593 1658 3.146396 GCGTTTTGCGATTGTGGC 58.854 55.556 0.00 0.00 44.77 5.01
1758 1831 2.202797 GCGAGCGCAGATCTTGGA 60.203 61.111 11.47 0.00 43.00 3.53
1849 1925 2.163211 GGTTTGCTGGAAGAGATGAAGC 59.837 50.000 0.00 0.00 34.07 3.86
1872 1948 2.053244 AGGGACATTCAGGCTGATAGG 58.947 52.381 19.50 12.96 0.00 2.57
1877 1953 0.475906 ATTCAGGCTGATAGGGTGGC 59.524 55.000 19.50 0.00 0.00 5.01
1921 1997 2.048690 GCGAGGATGAGGGCGATC 60.049 66.667 0.00 0.00 0.00 3.69
1936 2012 2.410939 GCGATCTAGATGCTGCATTCA 58.589 47.619 17.36 6.75 0.00 2.57
1944 2020 1.929806 ATGCTGCATTCACGGTGCTG 61.930 55.000 9.81 4.81 42.92 4.41
1995 2071 5.584649 GGCAGATGCAGTTAGTTATAACACA 59.415 40.000 17.65 2.30 44.36 3.72
2055 2131 2.350772 CGCAAATGAGTTGGTTGAGGAC 60.351 50.000 0.00 0.00 37.73 3.85
2124 2200 1.255882 TTGATGGGATGTGTGTTGCC 58.744 50.000 0.00 0.00 0.00 4.52
2504 2580 4.142093 GGCTACCTATCACGTTTTCCTACA 60.142 45.833 0.00 0.00 0.00 2.74
2527 2603 6.935208 ACACAATTCAGGTTAGTTCTTACCTC 59.065 38.462 7.44 0.00 42.81 3.85
2549 2625 7.660208 ACCTCGAAGTTCTGTTAATGTTATTGT 59.340 33.333 0.56 0.00 0.00 2.71
2553 2629 9.103048 CGAAGTTCTGTTAATGTTATTGTTCAC 57.897 33.333 0.56 0.00 0.00 3.18
2556 2632 9.077885 AGTTCTGTTAATGTTATTGTTCACCAT 57.922 29.630 0.00 0.00 0.00 3.55
2557 2633 9.128107 GTTCTGTTAATGTTATTGTTCACCATG 57.872 33.333 0.00 0.00 0.00 3.66
2558 2634 8.628630 TCTGTTAATGTTATTGTTCACCATGA 57.371 30.769 0.00 0.00 0.00 3.07
2559 2635 9.072375 TCTGTTAATGTTATTGTTCACCATGAA 57.928 29.630 0.00 0.00 33.32 2.57
2560 2636 9.345517 CTGTTAATGTTATTGTTCACCATGAAG 57.654 33.333 0.00 0.00 37.00 3.02
2561 2637 9.072375 TGTTAATGTTATTGTTCACCATGAAGA 57.928 29.630 0.00 0.00 37.00 2.87
2562 2638 9.906660 GTTAATGTTATTGTTCACCATGAAGAA 57.093 29.630 3.90 3.90 42.56 2.52
2563 2639 9.906660 TTAATGTTATTGTTCACCATGAAGAAC 57.093 29.630 17.91 17.91 41.45 3.01
2567 2643 3.213206 TGTTCACCATGAAGAACAGCT 57.787 42.857 21.44 0.00 46.46 4.24
2576 2652 1.980765 TGAAGAACAGCTGGACAGGAT 59.019 47.619 19.93 0.00 0.00 3.24
2589 2665 5.549347 CTGGACAGGATCAAAGATAGATGG 58.451 45.833 0.00 0.00 0.00 3.51
2649 2728 0.107017 ATGCAGGGTGGATGTAGTGC 60.107 55.000 0.00 0.00 0.00 4.40
2657 2736 0.179076 TGGATGTAGTGCGCAGATGG 60.179 55.000 12.22 0.00 0.00 3.51
2670 2749 2.289631 CGCAGATGGGAGTATATTGGCA 60.290 50.000 0.00 0.00 0.00 4.92
2674 2753 5.355350 GCAGATGGGAGTATATTGGCAATAC 59.645 44.000 21.43 12.99 0.00 1.89
2679 2758 7.523293 TGGGAGTATATTGGCAATACAAATG 57.477 36.000 21.43 0.00 33.15 2.32
2706 2785 9.765795 CTTCATACAAGGTTATAGAAACCCTAG 57.234 37.037 3.33 0.00 41.18 3.02
2708 2787 9.144298 TCATACAAGGTTATAGAAACCCTAGAG 57.856 37.037 3.33 0.00 41.18 2.43
2744 2823 8.435982 AGTTTCTTAGGATCCTCTGAATAATGG 58.564 37.037 20.22 0.00 0.00 3.16
2745 2824 6.365970 TCTTAGGATCCTCTGAATAATGGC 57.634 41.667 20.22 0.00 0.00 4.40
2785 2866 8.776376 AATGTTGTTTTTGACATCTTGTTCTT 57.224 26.923 0.00 0.00 38.26 2.52
2859 2940 6.177610 TCCACAGGATTTGTATACAGTTTCC 58.822 40.000 16.99 16.99 38.16 3.13
2870 2951 7.400599 TGTATACAGTTTCCCTACACTACAG 57.599 40.000 0.08 0.00 0.00 2.74
2875 2956 4.283722 CAGTTTCCCTACACTACAGGAACT 59.716 45.833 0.00 0.00 38.10 3.01
2918 2999 3.070159 AGAAGCTAGCAGAAGACACAACA 59.930 43.478 18.83 0.00 0.00 3.33
2926 3007 6.699575 AGCAGAAGACACAACAATAGTTTT 57.300 33.333 0.00 0.00 35.28 2.43
2928 3009 5.915196 GCAGAAGACACAACAATAGTTTTCC 59.085 40.000 0.00 0.00 35.28 3.13
2953 3034 9.744468 CCCTAAAATAACACATTTTATGGCTAC 57.256 33.333 9.42 0.00 34.73 3.58
2967 3048 8.472007 TTTTATGGCTACACATTAATTAGGGG 57.528 34.615 0.00 0.00 32.39 4.79
3014 3095 5.045651 TGCCAGAAAGAGTGAAGATATTGGA 60.046 40.000 0.00 0.00 0.00 3.53
3024 3106 8.601546 AGAGTGAAGATATTGGAGAAAAGACTT 58.398 33.333 0.00 0.00 0.00 3.01
3025 3107 9.225436 GAGTGAAGATATTGGAGAAAAGACTTT 57.775 33.333 0.00 0.00 0.00 2.66
3041 3123 3.555956 AGACTTTACAAGTGCAACAGTCG 59.444 43.478 0.00 0.00 43.03 4.18
3068 3169 7.928307 TGGCTATCTTATCAATTTCTATGCC 57.072 36.000 0.00 0.00 35.22 4.40
3069 3170 7.693132 TGGCTATCTTATCAATTTCTATGCCT 58.307 34.615 0.00 0.00 35.61 4.75
3070 3171 8.166061 TGGCTATCTTATCAATTTCTATGCCTT 58.834 33.333 0.00 0.00 35.61 4.35
3071 3172 9.018582 GGCTATCTTATCAATTTCTATGCCTTT 57.981 33.333 0.00 0.00 0.00 3.11
3079 3180 8.767478 ATCAATTTCTATGCCTTTCAAAACTG 57.233 30.769 0.00 0.00 0.00 3.16
3080 3181 7.950512 TCAATTTCTATGCCTTTCAAAACTGA 58.049 30.769 0.00 0.00 0.00 3.41
3081 3182 8.420222 TCAATTTCTATGCCTTTCAAAACTGAA 58.580 29.630 0.00 0.00 0.00 3.02
3082 3183 8.706035 CAATTTCTATGCCTTTCAAAACTGAAG 58.294 33.333 0.00 0.00 0.00 3.02
3083 3184 6.959639 TTCTATGCCTTTCAAAACTGAAGT 57.040 33.333 0.00 0.00 0.00 3.01
3084 3185 8.458573 TTTCTATGCCTTTCAAAACTGAAGTA 57.541 30.769 0.00 0.00 0.00 2.24
3085 3186 8.635765 TTCTATGCCTTTCAAAACTGAAGTAT 57.364 30.769 0.00 0.00 0.00 2.12
3112 3213 6.707599 GTTGGAAACTGATGTAGTGAGTAC 57.292 41.667 0.00 0.00 45.32 2.73
3124 3225 3.955650 AGTGAGTACATGTTTACCGCT 57.044 42.857 2.30 0.93 0.00 5.52
3136 3237 1.568504 TTACCGCTTCCATCTCCTGT 58.431 50.000 0.00 0.00 0.00 4.00
3139 3240 1.817099 CGCTTCCATCTCCTGTGCC 60.817 63.158 0.00 0.00 0.00 5.01
3140 3241 1.606531 GCTTCCATCTCCTGTGCCT 59.393 57.895 0.00 0.00 0.00 4.75
3142 3243 1.210478 GCTTCCATCTCCTGTGCCTTA 59.790 52.381 0.00 0.00 0.00 2.69
3152 3253 1.246649 CTGTGCCTTATGCCACACAA 58.753 50.000 0.00 0.00 42.07 3.33
3181 3282 2.557056 TCTGTTAGCAGTAGTTCGCAGT 59.443 45.455 6.47 0.00 43.05 4.40
3195 3296 2.948720 GCAGTCGGAGCCTGGACTT 61.949 63.158 0.00 0.00 36.01 3.01
3225 3326 6.427242 GTCTCTCCCGTTTATCTTTGAAAACT 59.573 38.462 0.00 0.00 34.21 2.66
3298 3413 6.299141 ACAGAAAACCTCAAAGCTTCTGATA 58.701 36.000 15.06 0.00 43.65 2.15
3345 3462 8.358582 AGAAATAAATGAATCTTCAGGCAAGT 57.641 30.769 0.00 0.00 41.08 3.16
3355 3472 1.673665 CAGGCAAGTGGAGCACTCC 60.674 63.158 9.88 9.88 44.62 3.85
3365 3482 0.035915 GGAGCACTCCTTTCCCTGAC 60.036 60.000 9.54 0.00 46.16 3.51
3370 3487 1.078848 CTCCTTTCCCTGACTGCCG 60.079 63.158 0.00 0.00 0.00 5.69
3371 3488 2.045926 CCTTTCCCTGACTGCCGG 60.046 66.667 0.00 0.00 0.00 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 9.745880 GCATAATTAAGAGTACTTAGTGCTACA 57.254 33.333 2.37 0.00 39.36 2.74
29 30 9.968870 AGCATAATTAAGAGTACTTAGTGCTAC 57.031 33.333 2.37 0.00 39.68 3.58
31 32 8.919145 AGAGCATAATTAAGAGTACTTAGTGCT 58.081 33.333 1.90 1.90 41.48 4.40
38 39 9.594936 ACAGGATAGAGCATAATTAAGAGTACT 57.405 33.333 0.00 0.00 0.00 2.73
39 40 9.632807 CACAGGATAGAGCATAATTAAGAGTAC 57.367 37.037 0.00 0.00 0.00 2.73
40 41 9.588096 TCACAGGATAGAGCATAATTAAGAGTA 57.412 33.333 0.00 0.00 0.00 2.59
41 42 8.484214 TCACAGGATAGAGCATAATTAAGAGT 57.516 34.615 0.00 0.00 0.00 3.24
45 46 9.944376 GGTTATCACAGGATAGAGCATAATTAA 57.056 33.333 0.00 0.00 37.31 1.40
46 47 9.326489 AGGTTATCACAGGATAGAGCATAATTA 57.674 33.333 0.00 0.00 37.31 1.40
47 48 8.212259 AGGTTATCACAGGATAGAGCATAATT 57.788 34.615 0.00 0.00 37.31 1.40
48 49 7.805083 AGGTTATCACAGGATAGAGCATAAT 57.195 36.000 0.00 0.00 37.31 1.28
49 50 8.753133 CATAGGTTATCACAGGATAGAGCATAA 58.247 37.037 0.00 0.00 37.31 1.90
50 51 7.343057 CCATAGGTTATCACAGGATAGAGCATA 59.657 40.741 0.00 0.00 37.31 3.14
51 52 6.155910 CCATAGGTTATCACAGGATAGAGCAT 59.844 42.308 0.00 0.00 37.31 3.79
52 53 5.481824 CCATAGGTTATCACAGGATAGAGCA 59.518 44.000 0.00 0.00 37.31 4.26
53 54 5.482175 ACCATAGGTTATCACAGGATAGAGC 59.518 44.000 0.00 0.00 37.31 4.09
54 55 7.546250 AACCATAGGTTATCACAGGATAGAG 57.454 40.000 0.00 0.00 44.94 2.43
55 56 7.689313 GCAAACCATAGGTTATCACAGGATAGA 60.689 40.741 1.26 0.00 46.20 1.98
56 57 6.428159 GCAAACCATAGGTTATCACAGGATAG 59.572 42.308 1.26 0.00 46.20 2.08
57 58 6.101150 AGCAAACCATAGGTTATCACAGGATA 59.899 38.462 1.26 0.00 46.20 2.59
58 59 5.103940 AGCAAACCATAGGTTATCACAGGAT 60.104 40.000 1.26 0.00 46.20 3.24
59 60 4.227300 AGCAAACCATAGGTTATCACAGGA 59.773 41.667 1.26 0.00 46.20 3.86
60 61 4.526970 AGCAAACCATAGGTTATCACAGG 58.473 43.478 1.26 0.00 46.20 4.00
61 62 6.515272 AAAGCAAACCATAGGTTATCACAG 57.485 37.500 1.26 0.00 46.20 3.66
62 63 6.295011 CCAAAAGCAAACCATAGGTTATCACA 60.295 38.462 1.26 0.00 46.20 3.58
63 64 6.071616 TCCAAAAGCAAACCATAGGTTATCAC 60.072 38.462 1.26 0.00 46.20 3.06
64 65 6.013379 TCCAAAAGCAAACCATAGGTTATCA 58.987 36.000 1.26 0.00 46.20 2.15
65 66 6.330278 GTCCAAAAGCAAACCATAGGTTATC 58.670 40.000 1.26 0.00 46.20 1.75
66 67 5.186992 GGTCCAAAAGCAAACCATAGGTTAT 59.813 40.000 1.26 0.00 46.20 1.89
67 68 4.525100 GGTCCAAAAGCAAACCATAGGTTA 59.475 41.667 1.26 0.00 46.20 2.85
69 70 2.897326 GGTCCAAAAGCAAACCATAGGT 59.103 45.455 0.00 0.00 37.65 3.08
70 71 3.165071 AGGTCCAAAAGCAAACCATAGG 58.835 45.455 0.00 0.00 34.09 2.57
71 72 4.082125 AGAGGTCCAAAAGCAAACCATAG 58.918 43.478 0.00 0.00 34.09 2.23
72 73 4.112634 AGAGGTCCAAAAGCAAACCATA 57.887 40.909 0.00 0.00 34.09 2.74
73 74 2.962859 AGAGGTCCAAAAGCAAACCAT 58.037 42.857 0.00 0.00 34.09 3.55
74 75 2.430332 CAAGAGGTCCAAAAGCAAACCA 59.570 45.455 0.00 0.00 34.09 3.67
75 76 2.430694 ACAAGAGGTCCAAAAGCAAACC 59.569 45.455 0.00 0.00 0.00 3.27
76 77 3.130340 TGACAAGAGGTCCAAAAGCAAAC 59.870 43.478 0.00 0.00 46.38 2.93
77 78 3.130340 GTGACAAGAGGTCCAAAAGCAAA 59.870 43.478 0.00 0.00 46.38 3.68
78 79 2.687935 GTGACAAGAGGTCCAAAAGCAA 59.312 45.455 0.00 0.00 46.38 3.91
79 80 2.297701 GTGACAAGAGGTCCAAAAGCA 58.702 47.619 0.00 0.00 46.38 3.91
80 81 2.297701 TGTGACAAGAGGTCCAAAAGC 58.702 47.619 0.00 0.00 46.38 3.51
81 82 4.823989 AGAATGTGACAAGAGGTCCAAAAG 59.176 41.667 0.00 0.00 46.38 2.27
82 83 4.792068 AGAATGTGACAAGAGGTCCAAAA 58.208 39.130 0.00 0.00 46.38 2.44
83 84 4.437682 AGAATGTGACAAGAGGTCCAAA 57.562 40.909 0.00 0.00 46.38 3.28
84 85 4.437682 AAGAATGTGACAAGAGGTCCAA 57.562 40.909 0.00 0.00 46.38 3.53
85 86 4.437682 AAAGAATGTGACAAGAGGTCCA 57.562 40.909 0.00 0.00 46.38 4.02
86 87 4.821805 TGAAAAGAATGTGACAAGAGGTCC 59.178 41.667 0.00 0.00 46.38 4.46
101 102 7.227910 AACATAGGTTTAGCGTCTTGAAAAGAA 59.772 33.333 0.00 0.00 44.96 2.52
102 103 6.708949 AACATAGGTTTAGCGTCTTGAAAAGA 59.291 34.615 0.00 0.00 42.44 2.52
103 104 6.797033 CAACATAGGTTTAGCGTCTTGAAAAG 59.203 38.462 0.00 0.00 39.50 2.27
104 105 6.261381 ACAACATAGGTTTAGCGTCTTGAAAA 59.739 34.615 0.00 0.00 34.21 2.29
105 106 5.761234 ACAACATAGGTTTAGCGTCTTGAAA 59.239 36.000 0.00 0.00 34.21 2.69
106 107 5.302360 ACAACATAGGTTTAGCGTCTTGAA 58.698 37.500 0.00 0.00 34.21 2.69
107 108 4.890088 ACAACATAGGTTTAGCGTCTTGA 58.110 39.130 0.00 0.00 34.21 3.02
108 109 5.382303 CAACAACATAGGTTTAGCGTCTTG 58.618 41.667 0.00 0.00 34.21 3.02
109 110 4.083484 GCAACAACATAGGTTTAGCGTCTT 60.083 41.667 0.00 0.00 34.21 3.01
110 111 3.435671 GCAACAACATAGGTTTAGCGTCT 59.564 43.478 0.00 0.00 34.21 4.18
111 112 3.435671 AGCAACAACATAGGTTTAGCGTC 59.564 43.478 0.00 0.00 34.21 5.19
112 113 3.408634 AGCAACAACATAGGTTTAGCGT 58.591 40.909 0.00 0.00 34.21 5.07
113 114 4.419522 AAGCAACAACATAGGTTTAGCG 57.580 40.909 0.00 0.00 34.21 4.26
114 115 6.852664 ACATAAGCAACAACATAGGTTTAGC 58.147 36.000 0.00 0.00 34.21 3.09
118 119 9.638239 CATTTAACATAAGCAACAACATAGGTT 57.362 29.630 0.00 0.00 37.87 3.50
119 120 7.759433 GCATTTAACATAAGCAACAACATAGGT 59.241 33.333 0.00 0.00 0.00 3.08
120 121 7.758980 TGCATTTAACATAAGCAACAACATAGG 59.241 33.333 0.00 0.00 31.42 2.57
121 122 8.586273 GTGCATTTAACATAAGCAACAACATAG 58.414 33.333 0.00 0.00 36.91 2.23
122 123 8.303156 AGTGCATTTAACATAAGCAACAACATA 58.697 29.630 0.00 0.00 36.91 2.29
123 124 7.153985 AGTGCATTTAACATAAGCAACAACAT 58.846 30.769 0.00 0.00 36.91 2.71
124 125 6.511416 AGTGCATTTAACATAAGCAACAACA 58.489 32.000 0.00 0.00 36.91 3.33
125 126 8.687824 ATAGTGCATTTAACATAAGCAACAAC 57.312 30.769 0.00 0.00 36.91 3.32
126 127 9.352784 GAATAGTGCATTTAACATAAGCAACAA 57.647 29.630 0.00 0.00 36.91 2.83
127 128 8.739039 AGAATAGTGCATTTAACATAAGCAACA 58.261 29.630 0.00 0.00 36.91 3.33
128 129 9.226345 GAGAATAGTGCATTTAACATAAGCAAC 57.774 33.333 0.00 0.00 36.91 4.17
129 130 8.955388 TGAGAATAGTGCATTTAACATAAGCAA 58.045 29.630 0.00 0.00 36.91 3.91
130 131 8.504812 TGAGAATAGTGCATTTAACATAAGCA 57.495 30.769 0.00 0.00 0.00 3.91
131 132 8.616076 ACTGAGAATAGTGCATTTAACATAAGC 58.384 33.333 0.00 0.00 0.00 3.09
133 134 9.665719 TGACTGAGAATAGTGCATTTAACATAA 57.334 29.630 0.00 0.00 0.00 1.90
134 135 9.317936 CTGACTGAGAATAGTGCATTTAACATA 57.682 33.333 0.00 0.00 0.00 2.29
135 136 8.043113 TCTGACTGAGAATAGTGCATTTAACAT 58.957 33.333 0.00 0.00 0.00 2.71
136 137 7.386059 TCTGACTGAGAATAGTGCATTTAACA 58.614 34.615 0.00 0.00 0.00 2.41
137 138 7.834068 TCTGACTGAGAATAGTGCATTTAAC 57.166 36.000 0.00 0.00 0.00 2.01
140 141 9.624373 AAATATCTGACTGAGAATAGTGCATTT 57.376 29.630 0.00 0.00 33.12 2.32
141 142 9.270640 GAAATATCTGACTGAGAATAGTGCATT 57.729 33.333 0.00 0.00 33.12 3.56
142 143 8.427276 TGAAATATCTGACTGAGAATAGTGCAT 58.573 33.333 0.00 0.00 33.12 3.96
143 144 7.785033 TGAAATATCTGACTGAGAATAGTGCA 58.215 34.615 0.00 0.00 33.12 4.57
144 145 8.710551 CATGAAATATCTGACTGAGAATAGTGC 58.289 37.037 0.00 0.00 33.12 4.40
145 146 9.761504 ACATGAAATATCTGACTGAGAATAGTG 57.238 33.333 0.00 0.00 33.12 2.74
146 147 9.979578 GACATGAAATATCTGACTGAGAATAGT 57.020 33.333 0.00 0.00 33.12 2.12
150 151 9.413734 TCTAGACATGAAATATCTGACTGAGAA 57.586 33.333 0.00 0.00 33.12 2.87
151 152 8.986929 TCTAGACATGAAATATCTGACTGAGA 57.013 34.615 0.00 0.00 34.25 3.27
152 153 9.844790 GATCTAGACATGAAATATCTGACTGAG 57.155 37.037 0.00 0.00 0.00 3.35
153 154 8.801299 GGATCTAGACATGAAATATCTGACTGA 58.199 37.037 0.00 0.00 0.00 3.41
154 155 8.583296 TGGATCTAGACATGAAATATCTGACTG 58.417 37.037 0.00 0.00 0.00 3.51
155 156 8.718158 TGGATCTAGACATGAAATATCTGACT 57.282 34.615 0.00 0.00 0.00 3.41
162 163 8.049117 GCCCATTATGGATCTAGACATGAAATA 58.951 37.037 13.63 0.00 40.96 1.40
163 164 6.888632 GCCCATTATGGATCTAGACATGAAAT 59.111 38.462 13.63 0.00 40.96 2.17
164 165 6.044754 AGCCCATTATGGATCTAGACATGAAA 59.955 38.462 13.63 0.00 40.96 2.69
165 166 5.549228 AGCCCATTATGGATCTAGACATGAA 59.451 40.000 13.63 0.00 40.96 2.57
166 167 5.096521 AGCCCATTATGGATCTAGACATGA 58.903 41.667 13.63 0.00 40.96 3.07
167 168 5.432680 AGCCCATTATGGATCTAGACATG 57.567 43.478 13.63 0.00 40.96 3.21
168 169 6.274200 AGAAAGCCCATTATGGATCTAGACAT 59.726 38.462 13.63 0.00 40.96 3.06
169 170 5.608437 AGAAAGCCCATTATGGATCTAGACA 59.392 40.000 13.63 0.00 40.96 3.41
170 171 6.013812 AGAGAAAGCCCATTATGGATCTAGAC 60.014 42.308 13.63 5.05 40.96 2.59
171 172 6.013898 CAGAGAAAGCCCATTATGGATCTAGA 60.014 42.308 13.63 0.00 40.96 2.43
172 173 6.171921 CAGAGAAAGCCCATTATGGATCTAG 58.828 44.000 13.63 0.00 40.96 2.43
173 174 5.608437 ACAGAGAAAGCCCATTATGGATCTA 59.392 40.000 13.63 0.00 40.96 1.98
174 175 4.414846 ACAGAGAAAGCCCATTATGGATCT 59.585 41.667 13.63 10.17 40.96 2.75
175 176 4.723309 ACAGAGAAAGCCCATTATGGATC 58.277 43.478 13.63 4.14 40.96 3.36
176 177 4.803329 ACAGAGAAAGCCCATTATGGAT 57.197 40.909 13.63 0.00 40.96 3.41
177 178 5.912149 ATACAGAGAAAGCCCATTATGGA 57.088 39.130 13.63 0.00 40.96 3.41
227 228 8.930760 CGTTTGGGATGATTGCTTTAATTAAAA 58.069 29.630 11.62 0.00 0.00 1.52
228 229 7.064016 GCGTTTGGGATGATTGCTTTAATTAAA 59.936 33.333 10.16 10.16 0.00 1.52
229 230 6.533367 GCGTTTGGGATGATTGCTTTAATTAA 59.467 34.615 0.00 0.00 0.00 1.40
230 231 6.039616 GCGTTTGGGATGATTGCTTTAATTA 58.960 36.000 0.00 0.00 0.00 1.40
231 232 4.869861 GCGTTTGGGATGATTGCTTTAATT 59.130 37.500 0.00 0.00 0.00 1.40
232 233 4.160252 AGCGTTTGGGATGATTGCTTTAAT 59.840 37.500 0.00 0.00 0.00 1.40
233 234 3.509575 AGCGTTTGGGATGATTGCTTTAA 59.490 39.130 0.00 0.00 0.00 1.52
234 235 3.088532 AGCGTTTGGGATGATTGCTTTA 58.911 40.909 0.00 0.00 0.00 1.85
235 236 1.895131 AGCGTTTGGGATGATTGCTTT 59.105 42.857 0.00 0.00 0.00 3.51
236 237 1.549203 AGCGTTTGGGATGATTGCTT 58.451 45.000 0.00 0.00 0.00 3.91
237 238 2.292267 CTAGCGTTTGGGATGATTGCT 58.708 47.619 0.00 0.00 35.12 3.91
238 239 2.017049 ACTAGCGTTTGGGATGATTGC 58.983 47.619 0.00 0.00 0.00 3.56
239 240 5.116180 TCTAACTAGCGTTTGGGATGATTG 58.884 41.667 0.00 0.00 34.59 2.67
240 241 5.353394 TCTAACTAGCGTTTGGGATGATT 57.647 39.130 0.00 0.00 34.59 2.57
241 242 5.353394 TTCTAACTAGCGTTTGGGATGAT 57.647 39.130 0.00 0.00 34.59 2.45
242 243 4.811969 TTCTAACTAGCGTTTGGGATGA 57.188 40.909 0.00 0.00 34.59 2.92
243 244 6.513180 TCTATTCTAACTAGCGTTTGGGATG 58.487 40.000 0.00 0.00 34.59 3.51
244 245 6.726490 TCTATTCTAACTAGCGTTTGGGAT 57.274 37.500 0.00 0.00 34.59 3.85
245 246 6.534475 TTCTATTCTAACTAGCGTTTGGGA 57.466 37.500 0.00 0.00 34.59 4.37
246 247 7.306632 CGATTTCTATTCTAACTAGCGTTTGGG 60.307 40.741 0.00 0.00 34.59 4.12
247 248 7.306632 CCGATTTCTATTCTAACTAGCGTTTGG 60.307 40.741 0.00 0.00 34.59 3.28
248 249 7.222224 ACCGATTTCTATTCTAACTAGCGTTTG 59.778 37.037 0.00 0.00 34.59 2.93
249 250 7.222224 CACCGATTTCTATTCTAACTAGCGTTT 59.778 37.037 0.00 0.00 34.59 3.60
250 251 6.696148 CACCGATTTCTATTCTAACTAGCGTT 59.304 38.462 0.00 0.00 37.15 4.84
251 252 6.183360 ACACCGATTTCTATTCTAACTAGCGT 60.183 38.462 0.00 0.00 0.00 5.07
252 253 6.207213 ACACCGATTTCTATTCTAACTAGCG 58.793 40.000 0.00 0.00 0.00 4.26
253 254 9.525409 TTAACACCGATTTCTATTCTAACTAGC 57.475 33.333 0.00 0.00 0.00 3.42
256 257 9.379791 CCTTTAACACCGATTTCTATTCTAACT 57.620 33.333 0.00 0.00 0.00 2.24
257 258 8.610035 CCCTTTAACACCGATTTCTATTCTAAC 58.390 37.037 0.00 0.00 0.00 2.34
258 259 7.771826 CCCCTTTAACACCGATTTCTATTCTAA 59.228 37.037 0.00 0.00 0.00 2.10
259 260 7.277396 CCCCTTTAACACCGATTTCTATTCTA 58.723 38.462 0.00 0.00 0.00 2.10
260 261 6.120220 CCCCTTTAACACCGATTTCTATTCT 58.880 40.000 0.00 0.00 0.00 2.40
261 262 5.220989 GCCCCTTTAACACCGATTTCTATTC 60.221 44.000 0.00 0.00 0.00 1.75
262 263 4.643334 GCCCCTTTAACACCGATTTCTATT 59.357 41.667 0.00 0.00 0.00 1.73
263 264 4.204799 GCCCCTTTAACACCGATTTCTAT 58.795 43.478 0.00 0.00 0.00 1.98
264 265 3.613030 GCCCCTTTAACACCGATTTCTA 58.387 45.455 0.00 0.00 0.00 2.10
265 266 2.443416 GCCCCTTTAACACCGATTTCT 58.557 47.619 0.00 0.00 0.00 2.52
266 267 1.131693 CGCCCCTTTAACACCGATTTC 59.868 52.381 0.00 0.00 0.00 2.17
267 268 1.170442 CGCCCCTTTAACACCGATTT 58.830 50.000 0.00 0.00 0.00 2.17
268 269 0.325602 TCGCCCCTTTAACACCGATT 59.674 50.000 0.00 0.00 0.00 3.34
269 270 0.392060 GTCGCCCCTTTAACACCGAT 60.392 55.000 0.00 0.00 0.00 4.18
270 271 1.004679 GTCGCCCCTTTAACACCGA 60.005 57.895 0.00 0.00 0.00 4.69
271 272 0.247185 TAGTCGCCCCTTTAACACCG 59.753 55.000 0.00 0.00 0.00 4.94
272 273 1.002315 TGTAGTCGCCCCTTTAACACC 59.998 52.381 0.00 0.00 0.00 4.16
273 274 2.460757 TGTAGTCGCCCCTTTAACAC 57.539 50.000 0.00 0.00 0.00 3.32
274 275 2.369532 AGTTGTAGTCGCCCCTTTAACA 59.630 45.455 0.00 0.00 0.00 2.41
275 276 3.049708 AGTTGTAGTCGCCCCTTTAAC 57.950 47.619 0.00 0.00 0.00 2.01
276 277 3.196254 CCTAGTTGTAGTCGCCCCTTTAA 59.804 47.826 0.00 0.00 0.00 1.52
277 278 2.762327 CCTAGTTGTAGTCGCCCCTTTA 59.238 50.000 0.00 0.00 0.00 1.85
278 279 1.553704 CCTAGTTGTAGTCGCCCCTTT 59.446 52.381 0.00 0.00 0.00 3.11
279 280 1.192428 CCTAGTTGTAGTCGCCCCTT 58.808 55.000 0.00 0.00 0.00 3.95
280 281 1.328430 GCCTAGTTGTAGTCGCCCCT 61.328 60.000 0.00 0.00 0.00 4.79
281 282 1.143401 GCCTAGTTGTAGTCGCCCC 59.857 63.158 0.00 0.00 0.00 5.80
282 283 0.459759 GTGCCTAGTTGTAGTCGCCC 60.460 60.000 0.00 0.00 0.00 6.13
283 284 0.459759 GGTGCCTAGTTGTAGTCGCC 60.460 60.000 0.00 0.00 28.02 5.54
284 285 0.801067 CGGTGCCTAGTTGTAGTCGC 60.801 60.000 0.00 0.00 0.00 5.19
285 286 0.801067 GCGGTGCCTAGTTGTAGTCG 60.801 60.000 0.00 0.00 0.00 4.18
286 287 0.459759 GGCGGTGCCTAGTTGTAGTC 60.460 60.000 0.00 0.00 46.69 2.59
287 288 1.595357 GGCGGTGCCTAGTTGTAGT 59.405 57.895 0.00 0.00 46.69 2.73
288 289 4.515404 GGCGGTGCCTAGTTGTAG 57.485 61.111 0.00 0.00 46.69 2.74
303 304 4.120755 CTTGAGGGGGAGCTGGGC 62.121 72.222 0.00 0.00 0.00 5.36
304 305 2.285668 TCTTGAGGGGGAGCTGGG 60.286 66.667 0.00 0.00 0.00 4.45
305 306 2.373707 CCTCTTGAGGGGGAGCTGG 61.374 68.421 8.74 0.00 0.00 4.85
306 307 3.041469 GCCTCTTGAGGGGGAGCTG 62.041 68.421 17.33 0.00 0.00 4.24
307 308 2.690510 GCCTCTTGAGGGGGAGCT 60.691 66.667 17.33 0.00 0.00 4.09
308 309 4.168291 CGCCTCTTGAGGGGGAGC 62.168 72.222 21.54 5.94 38.82 4.70
314 315 4.785453 GTGGCCCGCCTCTTGAGG 62.785 72.222 12.07 12.07 36.94 3.86
335 336 2.901051 CTACTAGGTGTTGGGGCGCG 62.901 65.000 0.00 0.00 0.00 6.86
336 337 1.153429 CTACTAGGTGTTGGGGCGC 60.153 63.158 0.00 0.00 0.00 6.53
337 338 1.120530 ATCTACTAGGTGTTGGGGCG 58.879 55.000 0.00 0.00 0.00 6.13
338 339 6.666546 TGTATATATCTACTAGGTGTTGGGGC 59.333 42.308 0.00 0.00 0.00 5.80
339 340 8.660295 TTGTATATATCTACTAGGTGTTGGGG 57.340 38.462 0.00 0.00 0.00 4.96
340 341 9.529823 TCTTGTATATATCTACTAGGTGTTGGG 57.470 37.037 8.93 0.00 0.00 4.12
357 358 9.821240 AAGAGAGGTCTATCACATCTTGTATAT 57.179 33.333 0.00 0.00 46.34 0.86
358 359 9.072375 CAAGAGAGGTCTATCACATCTTGTATA 57.928 37.037 0.00 0.00 46.34 1.47
359 360 7.015098 CCAAGAGAGGTCTATCACATCTTGTAT 59.985 40.741 10.19 0.00 46.34 2.29
360 361 6.322456 CCAAGAGAGGTCTATCACATCTTGTA 59.678 42.308 10.19 0.00 46.34 2.41
361 362 5.128499 CCAAGAGAGGTCTATCACATCTTGT 59.872 44.000 10.19 0.00 46.34 3.16
362 363 5.128499 ACCAAGAGAGGTCTATCACATCTTG 59.872 44.000 5.31 5.31 46.34 3.02
363 364 5.276440 ACCAAGAGAGGTCTATCACATCTT 58.724 41.667 0.00 0.00 46.34 2.40
365 366 5.355596 CAACCAAGAGAGGTCTATCACATC 58.644 45.833 0.00 0.00 42.25 3.06
366 367 4.383552 GCAACCAAGAGAGGTCTATCACAT 60.384 45.833 0.00 0.00 42.25 3.21
367 368 3.055819 GCAACCAAGAGAGGTCTATCACA 60.056 47.826 0.00 0.00 42.25 3.58
368 369 3.526534 GCAACCAAGAGAGGTCTATCAC 58.473 50.000 0.00 0.00 42.25 3.06
369 370 2.501723 GGCAACCAAGAGAGGTCTATCA 59.498 50.000 0.00 0.00 42.25 2.15
370 371 3.186702 GGCAACCAAGAGAGGTCTATC 57.813 52.381 0.00 0.00 42.25 2.08
385 386 5.132897 TGTGTTTTAATCTCATGGGCAAC 57.867 39.130 0.00 0.00 0.00 4.17
386 387 5.999205 ATGTGTTTTAATCTCATGGGCAA 57.001 34.783 0.00 0.00 0.00 4.52
387 388 7.658525 AATATGTGTTTTAATCTCATGGGCA 57.341 32.000 0.00 0.00 0.00 5.36
388 389 8.947055 AAAATATGTGTTTTAATCTCATGGGC 57.053 30.769 0.00 0.00 29.96 5.36
469 470 8.766151 GCCAGCTAAGTAATGAAAGTTATACTC 58.234 37.037 0.00 0.00 0.00 2.59
470 471 8.265055 TGCCAGCTAAGTAATGAAAGTTATACT 58.735 33.333 0.00 0.00 0.00 2.12
473 474 9.277783 CTATGCCAGCTAAGTAATGAAAGTTAT 57.722 33.333 0.00 0.00 0.00 1.89
476 477 6.653989 ACTATGCCAGCTAAGTAATGAAAGT 58.346 36.000 0.00 0.00 0.00 2.66
477 478 7.559590 AACTATGCCAGCTAAGTAATGAAAG 57.440 36.000 0.00 0.00 0.00 2.62
482 483 8.210946 TGTGATTAACTATGCCAGCTAAGTAAT 58.789 33.333 0.00 0.00 0.00 1.89
581 585 1.372004 CGACCGTACGGCAACTGAA 60.372 57.895 33.62 0.00 39.32 3.02
583 587 3.475774 GCGACCGTACGGCAACTG 61.476 66.667 33.62 18.94 39.32 3.16
584 588 1.936436 TATGCGACCGTACGGCAACT 61.936 55.000 33.62 15.00 39.32 3.16
585 589 0.872881 ATATGCGACCGTACGGCAAC 60.873 55.000 33.62 22.13 39.32 4.17
586 590 0.667453 TATATGCGACCGTACGGCAA 59.333 50.000 33.62 16.94 39.32 4.52
587 591 0.667453 TTATATGCGACCGTACGGCA 59.333 50.000 33.62 25.05 39.32 5.69
588 592 1.069022 TCTTATATGCGACCGTACGGC 60.069 52.381 33.62 23.70 39.32 5.68
591 595 4.082895 AGTCCATCTTATATGCGACCGTAC 60.083 45.833 0.00 0.00 0.00 3.67
595 599 5.185249 TCCTTAGTCCATCTTATATGCGACC 59.815 44.000 0.00 0.00 0.00 4.79
614 618 8.028652 ACAAATGTTCCCAAATTTCTTCCTTA 57.971 30.769 0.00 0.00 0.00 2.69
617 621 6.542005 ACAACAAATGTTCCCAAATTTCTTCC 59.458 34.615 0.00 0.00 40.06 3.46
619 623 9.625747 AATACAACAAATGTTCCCAAATTTCTT 57.374 25.926 0.00 0.00 43.63 2.52
676 703 7.879160 AGCTTAATTCATGGAGAAATTTTGCAA 59.121 29.630 0.00 0.00 40.22 4.08
704 731 8.976471 CACAATGTGTAACTTATGCAATTTTCA 58.024 29.630 5.00 0.00 38.04 2.69
775 828 4.280677 GCACAGCTTAGAGATCTCTACCAT 59.719 45.833 28.40 15.68 41.48 3.55
778 831 4.338118 AGTGCACAGCTTAGAGATCTCTAC 59.662 45.833 28.40 19.10 41.48 2.59
788 841 7.254590 GGACATTAATTAGAGTGCACAGCTTAG 60.255 40.741 21.04 1.33 0.00 2.18
792 845 4.878397 AGGACATTAATTAGAGTGCACAGC 59.122 41.667 21.04 10.72 0.00 4.40
793 846 8.668510 ATTAGGACATTAATTAGAGTGCACAG 57.331 34.615 21.04 0.00 0.00 3.66
845 898 6.058183 AGTGTAGAAGATTCCACCAATATGC 58.942 40.000 0.00 0.00 0.00 3.14
868 921 7.484641 CACATTTGTCAATGGTTCGGTTTATAG 59.515 37.037 0.31 0.00 43.82 1.31
875 928 3.641437 ACACATTTGTCAATGGTTCGG 57.359 42.857 0.31 0.00 43.82 4.30
876 929 5.964887 AAAACACATTTGTCAATGGTTCG 57.035 34.783 0.31 0.00 43.82 3.95
899 952 7.326968 TCAAATAACCAAATCATATGTGCGA 57.673 32.000 1.90 0.00 0.00 5.10
900 953 9.844790 ATATCAAATAACCAAATCATATGTGCG 57.155 29.630 1.90 0.00 0.00 5.34
927 980 4.727507 ATCAAGCACGTTCTAGATGACT 57.272 40.909 0.00 0.00 0.00 3.41
933 986 5.796935 CCAAATCAAATCAAGCACGTTCTAG 59.203 40.000 0.00 0.00 0.00 2.43
935 988 4.037923 ACCAAATCAAATCAAGCACGTTCT 59.962 37.500 0.00 0.00 0.00 3.01
964 1017 5.020795 GGTAAGGAATTTTGAAGGGCCTTA 58.979 41.667 20.97 3.35 37.05 2.69
968 1021 3.832490 ACTGGTAAGGAATTTTGAAGGGC 59.168 43.478 0.00 0.00 0.00 5.19
1023 1079 1.682854 TGGTACGACGAGAACTTGGTT 59.317 47.619 0.00 0.00 0.00 3.67
1089 1145 2.436824 GGGTTGAGGAAGAGGCGC 60.437 66.667 0.00 0.00 0.00 6.53
1111 1167 2.600470 GGTGGAAACAGGGGTGGC 60.600 66.667 0.00 0.00 44.46 5.01
1207 1263 3.160748 GAGGCTGGAGAGGAGGGC 61.161 72.222 0.00 0.00 0.00 5.19
1728 1801 2.818132 CTCGCCACCATCTCCTCC 59.182 66.667 0.00 0.00 0.00 4.30
1758 1831 1.663695 CGTAAATGGCGGAATCCAGT 58.336 50.000 0.00 0.00 39.89 4.00
1849 1925 0.250234 TCAGCCTGAATGTCCCTTCG 59.750 55.000 0.00 0.00 0.00 3.79
1905 1981 0.808125 CTAGATCGCCCTCATCCTCG 59.192 60.000 0.00 0.00 0.00 4.63
1921 1997 1.596260 CACCGTGAATGCAGCATCTAG 59.404 52.381 8.77 0.87 0.00 2.43
1936 2012 1.746615 GCATGTCATCCAGCACCGT 60.747 57.895 0.00 0.00 0.00 4.83
1944 2020 2.165030 CCCACTTTTCTGCATGTCATCC 59.835 50.000 0.00 0.00 0.00 3.51
1959 2035 0.896940 CATCTGCCTTGCACCCACTT 60.897 55.000 0.00 0.00 33.79 3.16
1983 2059 5.650266 CCCAGCAACCAATGTGTTATAACTA 59.350 40.000 16.33 6.41 0.00 2.24
1995 2071 2.576832 GCACAGCCCAGCAACCAAT 61.577 57.895 0.00 0.00 0.00 3.16
2034 2110 1.879380 TCCTCAACCAACTCATTTGCG 59.121 47.619 0.00 0.00 33.34 4.85
2124 2200 3.508840 GCTTCATGGAACGCCCCG 61.509 66.667 0.00 0.00 0.00 5.73
2133 2209 3.119245 CCAAAACCTGATCTGCTTCATGG 60.119 47.826 0.00 0.00 0.00 3.66
2196 2272 1.806542 CCCTGAATGAACTTGGTCACG 59.193 52.381 0.00 0.00 0.00 4.35
2378 2454 5.901853 TCAAGTATCCAGAGATCCAGTCAAT 59.098 40.000 0.00 0.00 33.67 2.57
2493 2569 5.432885 AACCTGAATTGTGTAGGAAAACG 57.567 39.130 0.00 0.00 35.55 3.60
2504 2580 6.014840 TCGAGGTAAGAACTAACCTGAATTGT 60.015 38.462 0.00 0.00 46.22 2.71
2527 2603 9.103048 GTGAACAATAACATTAACAGAACTTCG 57.897 33.333 0.00 0.00 0.00 3.79
2549 2625 2.106338 TCCAGCTGTTCTTCATGGTGAA 59.894 45.455 13.81 0.00 34.79 3.18
2553 2629 2.082231 CTGTCCAGCTGTTCTTCATGG 58.918 52.381 13.81 0.00 0.00 3.66
2556 2632 1.423584 TCCTGTCCAGCTGTTCTTCA 58.576 50.000 13.81 3.48 0.00 3.02
2557 2633 2.027745 TGATCCTGTCCAGCTGTTCTTC 60.028 50.000 13.81 1.03 0.00 2.87
2558 2634 1.980765 TGATCCTGTCCAGCTGTTCTT 59.019 47.619 13.81 0.00 0.00 2.52
2559 2635 1.649321 TGATCCTGTCCAGCTGTTCT 58.351 50.000 13.81 0.00 0.00 3.01
2560 2636 2.479566 TTGATCCTGTCCAGCTGTTC 57.520 50.000 13.81 5.71 0.00 3.18
2561 2637 2.373169 TCTTTGATCCTGTCCAGCTGTT 59.627 45.455 13.81 0.00 0.00 3.16
2562 2638 1.980765 TCTTTGATCCTGTCCAGCTGT 59.019 47.619 13.81 0.00 0.00 4.40
2563 2639 2.775911 TCTTTGATCCTGTCCAGCTG 57.224 50.000 6.78 6.78 0.00 4.24
2564 2640 4.293494 TCTATCTTTGATCCTGTCCAGCT 58.707 43.478 0.00 0.00 0.00 4.24
2565 2641 4.679373 TCTATCTTTGATCCTGTCCAGC 57.321 45.455 0.00 0.00 0.00 4.85
2566 2642 5.306419 TCCATCTATCTTTGATCCTGTCCAG 59.694 44.000 0.00 0.00 0.00 3.86
2567 2643 5.218959 TCCATCTATCTTTGATCCTGTCCA 58.781 41.667 0.00 0.00 0.00 4.02
2649 2728 2.289631 TGCCAATATACTCCCATCTGCG 60.290 50.000 0.00 0.00 0.00 5.18
2657 2736 7.219484 AGCATTTGTATTGCCAATATACTCC 57.781 36.000 0.00 0.00 41.06 3.85
2679 2758 7.054751 AGGGTTTCTATAACCTTGTATGAAGC 58.945 38.462 6.64 0.00 40.15 3.86
2727 2806 3.442977 GCATGCCATTATTCAGAGGATCC 59.557 47.826 6.36 2.48 33.66 3.36
2731 2810 5.708697 TCATAAGCATGCCATTATTCAGAGG 59.291 40.000 15.66 0.74 31.73 3.69
2741 2820 7.014905 ACAACATTATCTTCATAAGCATGCCAT 59.985 33.333 15.66 6.44 31.73 4.40
2744 2823 8.638685 AAACAACATTATCTTCATAAGCATGC 57.361 30.769 10.51 10.51 31.73 4.06
2772 2852 9.897744 TGTGATTCAATAAAAGAACAAGATGTC 57.102 29.630 0.00 0.00 0.00 3.06
2777 2858 9.681692 TCACATGTGATTCAATAAAAGAACAAG 57.318 29.630 24.56 0.00 34.14 3.16
2799 2880 6.371548 GGTATTTAGAAGAGCACAATGTCACA 59.628 38.462 0.00 0.00 0.00 3.58
2859 2940 3.769844 ACATGGAGTTCCTGTAGTGTAGG 59.230 47.826 0.00 0.00 36.82 3.18
2870 2951 6.515272 ACATATTTGTTCACATGGAGTTCC 57.485 37.500 0.00 0.00 29.55 3.62
2875 2956 9.056005 GCTTCTATACATATTTGTTCACATGGA 57.944 33.333 0.00 0.00 37.28 3.41
2946 3027 4.998051 CCCCCTAATTAATGTGTAGCCAT 58.002 43.478 0.00 0.00 0.00 4.40
2967 3048 7.438160 GGCATTTGCTAATTCTTGTAAATACCC 59.562 37.037 2.12 0.00 41.70 3.69
2969 3050 8.925161 TGGCATTTGCTAATTCTTGTAAATAC 57.075 30.769 2.12 0.00 41.70 1.89
3024 3106 3.743911 CCATACGACTGTTGCACTTGTAA 59.256 43.478 0.00 0.00 0.00 2.41
3025 3107 3.322369 CCATACGACTGTTGCACTTGTA 58.678 45.455 0.00 0.00 0.00 2.41
3112 3213 2.614057 GGAGATGGAAGCGGTAAACATG 59.386 50.000 3.76 0.00 0.00 3.21
3122 3223 0.034670 AAGGCACAGGAGATGGAAGC 60.035 55.000 0.00 0.00 0.00 3.86
3124 3225 2.421952 GCATAAGGCACAGGAGATGGAA 60.422 50.000 0.00 0.00 43.97 3.53
3139 3240 4.157289 AGAGCTGATTTTGTGTGGCATAAG 59.843 41.667 0.00 0.00 0.00 1.73
3140 3241 4.081406 AGAGCTGATTTTGTGTGGCATAA 58.919 39.130 0.00 0.00 0.00 1.90
3142 3243 2.230508 CAGAGCTGATTTTGTGTGGCAT 59.769 45.455 0.00 0.00 0.00 4.40
3181 3282 1.533033 TGTCAAGTCCAGGCTCCGA 60.533 57.895 0.00 0.00 0.00 4.55
3195 3296 3.698289 AGATAAACGGGAGAGACTGTCA 58.302 45.455 10.88 0.00 0.00 3.58
3225 3326 3.072915 ACAACCTTCATGATGACACCTGA 59.927 43.478 10.07 0.00 0.00 3.86
3327 3443 4.015084 CTCCACTTGCCTGAAGATTCATT 58.985 43.478 0.00 0.00 36.46 2.57
3329 3445 2.877300 GCTCCACTTGCCTGAAGATTCA 60.877 50.000 0.00 0.00 35.42 2.57
3332 3449 0.694771 TGCTCCACTTGCCTGAAGAT 59.305 50.000 0.00 0.00 35.42 2.40
3355 3472 2.747855 GCCGGCAGTCAGGGAAAG 60.748 66.667 24.80 0.00 0.00 2.62
3357 3474 3.329542 GATGCCGGCAGTCAGGGAA 62.330 63.158 35.36 7.66 0.00 3.97
3365 3482 4.766970 CTTCCTAGATGCCGGCAG 57.233 61.111 35.36 20.73 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.