Multiple sequence alignment - TraesCS6B01G064600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G064600 chr6B 100.000 7055 0 0 1 7055 42772718 42779772 0.000000e+00 13029.0
1 TraesCS6B01G064600 chr6B 90.305 1867 111 26 1 1859 42745539 42747343 0.000000e+00 2381.0
2 TraesCS6B01G064600 chr6B 99.164 718 3 3 3181 3895 483607437 483606720 0.000000e+00 1290.0
3 TraesCS6B01G064600 chr6B 99.289 703 3 2 3181 3881 157885005 157884303 0.000000e+00 1269.0
4 TraesCS6B01G064600 chr6B 98.605 717 7 3 3181 3895 171199479 171200194 0.000000e+00 1266.0
5 TraesCS6B01G064600 chr6B 98.187 717 10 3 3181 3895 567855627 567854912 0.000000e+00 1249.0
6 TraesCS6B01G064600 chr6B 88.122 985 96 13 1939 2912 42747340 42748314 0.000000e+00 1151.0
7 TraesCS6B01G064600 chr6B 94.474 742 34 5 5461 6199 42750236 42750973 0.000000e+00 1136.0
8 TraesCS6B01G064600 chr6B 87.304 827 69 18 4040 4857 42748650 42749449 0.000000e+00 913.0
9 TraesCS6B01G064600 chr6B 84.570 337 30 2 4840 5175 42749492 42749807 1.480000e-81 315.0
10 TraesCS6B01G064600 chr6B 98.901 91 1 0 1855 1945 628895947 628895857 5.660000e-36 163.0
11 TraesCS6B01G064600 chr6B 86.585 82 7 2 5740 5819 43353933 43354012 3.510000e-13 87.9
12 TraesCS6B01G064600 chrUn 90.642 1870 131 20 1 1859 93796412 93798248 0.000000e+00 2444.0
13 TraesCS6B01G064600 chrUn 90.747 951 79 7 5451 6398 93801156 93802100 0.000000e+00 1260.0
14 TraesCS6B01G064600 chrUn 89.355 667 41 13 4040 4695 93799559 93800206 0.000000e+00 811.0
15 TraesCS6B01G064600 chrUn 83.308 665 78 19 2037 2698 93798338 93798972 3.670000e-162 582.0
16 TraesCS6B01G064600 chrUn 86.056 502 59 6 4681 5175 93800289 93800786 4.850000e-146 529.0
17 TraesCS6B01G064600 chrUn 82.409 523 56 17 6544 7055 93802259 93802756 2.350000e-114 424.0
18 TraesCS6B01G064600 chrUn 90.351 228 19 2 2686 2912 93798990 93799215 5.350000e-76 296.0
19 TraesCS6B01G064600 chrUn 88.966 145 9 4 3902 4046 93799355 93799492 9.410000e-39 172.0
20 TraesCS6B01G064600 chrUn 90.756 119 11 0 2910 3028 19227818 19227936 7.320000e-35 159.0
21 TraesCS6B01G064600 chr6A 88.552 1878 148 23 1 1859 24325959 24327788 0.000000e+00 2215.0
22 TraesCS6B01G064600 chr6A 91.282 952 69 10 5451 6398 24331287 24332228 0.000000e+00 1286.0
23 TraesCS6B01G064600 chr6A 89.530 659 47 11 4040 4695 24329032 24329671 0.000000e+00 815.0
24 TraesCS6B01G064600 chr6A 87.090 488 53 7 2430 2912 24328243 24328725 1.730000e-150 544.0
25 TraesCS6B01G064600 chr6A 86.519 497 62 3 4681 5175 24329755 24330248 6.220000e-150 542.0
26 TraesCS6B01G064600 chr6A 82.672 479 39 16 6428 6902 24332315 24332753 1.110000e-102 385.0
27 TraesCS6B01G064600 chr6A 92.727 110 7 1 2905 3014 454677965 454678073 2.630000e-34 158.0
28 TraesCS6B01G064600 chr7B 99.028 720 4 3 3179 3895 680660174 680660893 0.000000e+00 1288.0
29 TraesCS6B01G064600 chr7B 98.326 717 9 3 3181 3895 429272455 429273170 0.000000e+00 1254.0
30 TraesCS6B01G064600 chr3B 99.024 717 5 2 3181 3895 558087700 558086984 0.000000e+00 1284.0
31 TraesCS6B01G064600 chr3B 79.267 709 105 24 1133 1816 782635779 782636470 2.320000e-124 457.0
32 TraesCS6B01G064600 chr3B 76.842 760 116 38 4118 4867 782637763 782638472 2.400000e-99 374.0
33 TraesCS6B01G064600 chr3B 79.167 528 70 24 2380 2903 782636907 782637398 5.280000e-86 329.0
34 TraesCS6B01G064600 chr3B 75.549 364 76 11 5462 5824 782639056 782639407 4.380000e-37 167.0
35 TraesCS6B01G064600 chr2B 98.747 718 7 2 3180 3895 214714578 214713861 0.000000e+00 1275.0
36 TraesCS6B01G064600 chr1A 97.762 715 13 3 3184 3895 10814166 10813452 0.000000e+00 1229.0
37 TraesCS6B01G064600 chr3D 79.887 706 104 21 1133 1817 585925425 585926113 3.830000e-132 483.0
38 TraesCS6B01G064600 chr3D 77.546 766 102 45 4118 4867 585927526 585928237 1.430000e-106 398.0
39 TraesCS6B01G064600 chr3D 79.740 538 68 23 2380 2912 585926552 585927053 1.130000e-92 351.0
40 TraesCS6B01G064600 chr3D 90.351 114 11 0 2910 3023 105453186 105453073 4.410000e-32 150.0
41 TraesCS6B01G064600 chr6D 97.938 97 1 1 1847 1943 248004096 248004001 4.380000e-37 167.0
42 TraesCS6B01G064600 chr6D 95.960 99 3 1 1853 1950 142141251 142141153 7.320000e-35 159.0
43 TraesCS6B01G064600 chr6D 95.960 99 3 1 1858 1955 468902040 468901942 7.320000e-35 159.0
44 TraesCS6B01G064600 chr2D 92.308 117 8 1 2904 3020 192181591 192181476 1.570000e-36 165.0
45 TraesCS6B01G064600 chr2D 91.818 110 9 0 2910 3019 388818757 388818866 3.410000e-33 154.0
46 TraesCS6B01G064600 chr5A 97.849 93 2 0 1851 1943 324692659 324692567 2.040000e-35 161.0
47 TraesCS6B01G064600 chr5A 93.396 106 3 4 1858 1962 306880971 306880869 3.410000e-33 154.0
48 TraesCS6B01G064600 chr7A 95.050 101 3 2 1847 1946 425782375 425782276 2.630000e-34 158.0
49 TraesCS6B01G064600 chr7A 89.256 121 10 3 2899 3018 532704944 532705062 1.590000e-31 148.0
50 TraesCS6B01G064600 chr7A 90.265 113 10 1 1839 1951 44739835 44739946 5.700000e-31 147.0
51 TraesCS6B01G064600 chr4B 93.396 106 7 0 2909 3014 411629573 411629678 2.630000e-34 158.0
52 TraesCS6B01G064600 chr2A 93.333 105 7 0 2910 3014 205917830 205917934 9.480000e-34 156.0
53 TraesCS6B01G064600 chr5D 89.916 119 12 0 2910 3028 472997434 472997552 3.410000e-33 154.0
54 TraesCS6B01G064600 chr4D 91.818 110 6 3 1856 1962 80976628 80976519 4.410000e-32 150.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G064600 chr6B 42772718 42779772 7054 False 13029.000000 13029 100.000000 1 7055 1 chr6B.!!$F1 7054
1 TraesCS6B01G064600 chr6B 483606720 483607437 717 True 1290.000000 1290 99.164000 3181 3895 1 chr6B.!!$R2 714
2 TraesCS6B01G064600 chr6B 157884303 157885005 702 True 1269.000000 1269 99.289000 3181 3881 1 chr6B.!!$R1 700
3 TraesCS6B01G064600 chr6B 171199479 171200194 715 False 1266.000000 1266 98.605000 3181 3895 1 chr6B.!!$F3 714
4 TraesCS6B01G064600 chr6B 567854912 567855627 715 True 1249.000000 1249 98.187000 3181 3895 1 chr6B.!!$R3 714
5 TraesCS6B01G064600 chr6B 42745539 42750973 5434 False 1179.200000 2381 88.955000 1 6199 5 chr6B.!!$F4 6198
6 TraesCS6B01G064600 chrUn 93796412 93802756 6344 False 814.750000 2444 87.729250 1 7055 8 chrUn.!!$F2 7054
7 TraesCS6B01G064600 chr6A 24325959 24332753 6794 False 964.500000 2215 87.607500 1 6902 6 chr6A.!!$F2 6901
8 TraesCS6B01G064600 chr7B 680660174 680660893 719 False 1288.000000 1288 99.028000 3179 3895 1 chr7B.!!$F2 716
9 TraesCS6B01G064600 chr7B 429272455 429273170 715 False 1254.000000 1254 98.326000 3181 3895 1 chr7B.!!$F1 714
10 TraesCS6B01G064600 chr3B 558086984 558087700 716 True 1284.000000 1284 99.024000 3181 3895 1 chr3B.!!$R1 714
11 TraesCS6B01G064600 chr3B 782635779 782639407 3628 False 331.750000 457 77.706250 1133 5824 4 chr3B.!!$F1 4691
12 TraesCS6B01G064600 chr2B 214713861 214714578 717 True 1275.000000 1275 98.747000 3180 3895 1 chr2B.!!$R1 715
13 TraesCS6B01G064600 chr1A 10813452 10814166 714 True 1229.000000 1229 97.762000 3184 3895 1 chr1A.!!$R1 711
14 TraesCS6B01G064600 chr3D 585925425 585928237 2812 False 410.666667 483 79.057667 1133 4867 3 chr3D.!!$F1 3734

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
434 436 0.030908 GCTAGGATTCGACGTGGGAG 59.969 60.0 0.00 0.0 0.00 4.30 F
626 640 0.035343 AGATCTCCCGTCGTCTGACA 60.035 55.0 8.73 0.0 45.80 3.58 F
1230 1260 0.177141 TCTATGTGGGCTGTTACCGC 59.823 55.0 0.00 0.0 38.95 5.68 F
2953 3138 0.530744 TCGCTCAAACGGATGTAGCT 59.469 50.0 0.00 0.0 0.00 3.32 F
3906 4154 0.500178 CGCGATGCTGACTGTATTCG 59.500 55.0 0.00 0.0 0.00 3.34 F
5781 7428 0.109532 TCCTGGCGTGATTGGTTTCA 59.890 50.0 0.00 0.0 0.00 2.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1537 1588 0.549469 ACCCTTGGGAGAAACGTTGT 59.451 50.000 13.39 0.00 0.0 3.32 R
1725 1781 1.069978 CAAACAAAATGAAGGCGGGGT 59.930 47.619 0.00 0.00 0.0 4.95 R
3117 3303 0.034670 GGCCAGACTGCTCTTTCCAT 60.035 55.000 0.00 0.00 0.0 3.41 R
4805 5483 0.180642 AGCAGCTCACCATGGATCAG 59.819 55.000 21.47 11.66 0.0 2.90 R
5788 7435 0.172578 TCCGTTCCATAGACAGTGCG 59.827 55.000 0.00 0.00 0.0 5.34 R
6889 8627 0.179145 CCCGAACGAACGCTCAGTAT 60.179 55.000 0.00 0.00 0.0 2.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
138 139 6.403049 ACATCAACCGACTATAACATCACAA 58.597 36.000 0.00 0.00 0.00 3.33
189 190 2.089349 GCTCCACGAACGAGACTGC 61.089 63.158 0.14 0.00 0.00 4.40
276 277 1.486211 TCGACATCCTCCTTCCCTTC 58.514 55.000 0.00 0.00 0.00 3.46
285 286 1.486726 CTCCTTCCCTTCTACGGCATT 59.513 52.381 0.00 0.00 0.00 3.56
294 295 4.201950 CCCTTCTACGGCATTGATTTTCTG 60.202 45.833 0.00 0.00 0.00 3.02
305 306 4.419522 TTGATTTTCTGCCTAAACGCTC 57.580 40.909 0.00 0.00 0.00 5.03
313 314 3.436704 TCTGCCTAAACGCTCTGAAATTG 59.563 43.478 0.00 0.00 0.00 2.32
315 316 3.818210 TGCCTAAACGCTCTGAAATTGAA 59.182 39.130 0.00 0.00 0.00 2.69
321 322 2.755103 ACGCTCTGAAATTGAAATCCCC 59.245 45.455 0.00 0.00 0.00 4.81
382 384 0.108138 TTTTGTTGGTGGTTTGGGCG 60.108 50.000 0.00 0.00 0.00 6.13
434 436 0.030908 GCTAGGATTCGACGTGGGAG 59.969 60.000 0.00 0.00 0.00 4.30
449 451 1.169034 GGGAGCCCATCTCAAATCGC 61.169 60.000 0.00 0.00 43.70 4.58
588 602 3.461773 CACTCCTCCGCCGTCCAT 61.462 66.667 0.00 0.00 0.00 3.41
613 627 1.807495 CGGCGGTTCCCCTAGATCTC 61.807 65.000 0.00 0.00 0.00 2.75
621 635 0.890090 CCCCTAGATCTCCCGTCGTC 60.890 65.000 0.00 0.00 0.00 4.20
622 636 0.108963 CCCTAGATCTCCCGTCGTCT 59.891 60.000 0.00 0.00 0.00 4.18
623 637 1.231221 CCTAGATCTCCCGTCGTCTG 58.769 60.000 0.00 0.00 0.00 3.51
624 638 1.202663 CCTAGATCTCCCGTCGTCTGA 60.203 57.143 0.00 0.00 0.00 3.27
625 639 1.868498 CTAGATCTCCCGTCGTCTGAC 59.132 57.143 0.00 0.00 41.91 3.51
626 640 0.035343 AGATCTCCCGTCGTCTGACA 60.035 55.000 8.73 0.00 45.80 3.58
628 642 0.608308 ATCTCCCGTCGTCTGACACA 60.608 55.000 8.73 0.00 45.80 3.72
630 644 1.228033 TCCCGTCGTCTGACACAGA 60.228 57.895 8.73 0.00 45.80 3.41
761 776 1.333347 CGACGACGGTGATCTGAGATC 60.333 57.143 15.36 15.36 35.72 2.75
762 777 1.944024 GACGACGGTGATCTGAGATCT 59.056 52.381 21.83 0.00 0.00 2.75
770 785 5.105877 ACGGTGATCTGAGATCTTTTCGTTA 60.106 40.000 21.83 0.00 0.00 3.18
805 820 5.221402 GGAAGCTTAATTAGGTAGGCGTAGT 60.221 44.000 0.00 0.00 33.29 2.73
806 821 6.015940 GGAAGCTTAATTAGGTAGGCGTAGTA 60.016 42.308 0.00 0.00 33.29 1.82
807 822 6.572167 AGCTTAATTAGGTAGGCGTAGTAG 57.428 41.667 0.00 0.00 31.69 2.57
854 870 2.037641 ACCAAGCTGGAATTTTGCTTCC 59.962 45.455 8.91 0.00 44.04 3.46
872 888 4.271049 GCTTCCGAATTTCTGATTCATCGA 59.729 41.667 7.91 0.00 32.38 3.59
915 931 0.398318 GGAACAGGGCACTCTGTCTT 59.602 55.000 3.12 0.00 46.17 3.01
916 932 1.517242 GAACAGGGCACTCTGTCTTG 58.483 55.000 3.12 0.00 46.17 3.02
930 946 1.486310 TGTCTTGACTGAAGCACCTGT 59.514 47.619 2.35 0.00 0.00 4.00
1052 1068 3.676873 GCCCTTGCTGGTATGTTCATTTG 60.677 47.826 0.00 0.00 33.53 2.32
1058 1075 4.158384 GCTGGTATGTTCATTTGTTGACG 58.842 43.478 0.00 0.00 32.84 4.35
1061 1078 6.176975 TGGTATGTTCATTTGTTGACGATC 57.823 37.500 0.00 0.00 32.84 3.69
1102 1132 2.159627 CGCCTGATTTGCTAGTTCGTTT 59.840 45.455 0.00 0.00 0.00 3.60
1103 1133 3.492313 GCCTGATTTGCTAGTTCGTTTG 58.508 45.455 0.00 0.00 0.00 2.93
1104 1134 3.058224 GCCTGATTTGCTAGTTCGTTTGT 60.058 43.478 0.00 0.00 0.00 2.83
1105 1135 4.153475 GCCTGATTTGCTAGTTCGTTTGTA 59.847 41.667 0.00 0.00 0.00 2.41
1106 1136 5.671329 GCCTGATTTGCTAGTTCGTTTGTAG 60.671 44.000 0.00 0.00 0.00 2.74
1107 1137 5.408604 CCTGATTTGCTAGTTCGTTTGTAGT 59.591 40.000 0.00 0.00 0.00 2.73
1108 1138 6.401153 CCTGATTTGCTAGTTCGTTTGTAGTC 60.401 42.308 0.00 0.00 0.00 2.59
1109 1139 5.407387 TGATTTGCTAGTTCGTTTGTAGTCC 59.593 40.000 0.00 0.00 0.00 3.85
1110 1140 4.325028 TTGCTAGTTCGTTTGTAGTCCA 57.675 40.909 0.00 0.00 0.00 4.02
1111 1141 3.645884 TGCTAGTTCGTTTGTAGTCCAC 58.354 45.455 0.00 0.00 0.00 4.02
1112 1142 3.068448 TGCTAGTTCGTTTGTAGTCCACA 59.932 43.478 0.00 0.00 34.51 4.17
1113 1143 4.243270 GCTAGTTCGTTTGTAGTCCACAT 58.757 43.478 0.00 0.00 36.90 3.21
1114 1144 4.689345 GCTAGTTCGTTTGTAGTCCACATT 59.311 41.667 0.00 0.00 36.90 2.71
1139 1169 2.727798 GTGTTTGATGACATTGTGCAGC 59.272 45.455 0.00 0.00 0.00 5.25
1230 1260 0.177141 TCTATGTGGGCTGTTACCGC 59.823 55.000 0.00 0.00 38.95 5.68
1233 1263 1.836999 ATGTGGGCTGTTACCGCTCA 61.837 55.000 0.00 0.00 39.24 4.26
1290 1324 6.352016 TCCCTCTATCTATTCTGTCAATGC 57.648 41.667 0.00 0.00 0.00 3.56
1351 1402 6.348050 GCATATGGCTCTGCTCAACTTATTAC 60.348 42.308 4.56 0.00 40.25 1.89
1536 1587 1.269723 CATCGCCGCTCTCTGGTAATA 59.730 52.381 0.00 0.00 0.00 0.98
1537 1588 1.395635 TCGCCGCTCTCTGGTAATAA 58.604 50.000 0.00 0.00 0.00 1.40
1554 1605 5.106436 GGTAATAACAACGTTTCTCCCAAGG 60.106 44.000 0.00 0.00 0.00 3.61
1666 1722 5.622770 TTCCTTCCATAAAGCGTTTTCTC 57.377 39.130 0.00 0.00 33.29 2.87
1725 1781 4.081365 TGCTCCGTATTTCCACTGTATGAA 60.081 41.667 0.00 0.00 0.00 2.57
1761 1817 2.687425 TGTTTGCTGCTCACTTGCTTTA 59.313 40.909 0.00 0.00 0.00 1.85
1820 1885 9.515226 ACTGCAAAATTCCTATTACTAGTTTGA 57.485 29.630 0.00 0.00 0.00 2.69
1835 1900 7.642082 ACTAGTTTGATATACTCACGGACTT 57.358 36.000 0.00 0.00 32.17 3.01
1864 1929 6.080969 TCTGTTTCATCTCTAGTACTCCCT 57.919 41.667 0.00 0.00 0.00 4.20
1865 1930 6.123651 TCTGTTTCATCTCTAGTACTCCCTC 58.876 44.000 0.00 0.00 0.00 4.30
1866 1931 6.069323 TCTGTTTCATCTCTAGTACTCCCTCT 60.069 42.308 0.00 0.00 0.00 3.69
1867 1932 5.888724 TGTTTCATCTCTAGTACTCCCTCTG 59.111 44.000 0.00 0.00 0.00 3.35
1868 1933 5.718801 TTCATCTCTAGTACTCCCTCTGT 57.281 43.478 0.00 0.00 0.00 3.41
1869 1934 6.826632 TTCATCTCTAGTACTCCCTCTGTA 57.173 41.667 0.00 0.00 0.00 2.74
1870 1935 6.826632 TCATCTCTAGTACTCCCTCTGTAA 57.173 41.667 0.00 0.00 0.00 2.41
1871 1936 7.209340 TCATCTCTAGTACTCCCTCTGTAAA 57.791 40.000 0.00 0.00 0.00 2.01
1872 1937 7.055378 TCATCTCTAGTACTCCCTCTGTAAAC 58.945 42.308 0.00 0.00 0.00 2.01
1873 1938 6.639590 TCTCTAGTACTCCCTCTGTAAACT 57.360 41.667 0.00 0.00 0.00 2.66
1874 1939 7.746243 TCTCTAGTACTCCCTCTGTAAACTA 57.254 40.000 0.00 0.00 0.00 2.24
1875 1940 8.155620 TCTCTAGTACTCCCTCTGTAAACTAA 57.844 38.462 0.00 0.00 0.00 2.24
1876 1941 8.780003 TCTCTAGTACTCCCTCTGTAAACTAAT 58.220 37.037 0.00 0.00 0.00 1.73
1884 1949 8.862085 ACTCCCTCTGTAAACTAATATAAGAGC 58.138 37.037 0.00 0.00 0.00 4.09
1885 1950 7.883217 TCCCTCTGTAAACTAATATAAGAGCG 58.117 38.462 0.00 0.00 0.00 5.03
1886 1951 7.504911 TCCCTCTGTAAACTAATATAAGAGCGT 59.495 37.037 0.00 0.00 0.00 5.07
1887 1952 8.142551 CCCTCTGTAAACTAATATAAGAGCGTT 58.857 37.037 0.00 0.00 0.00 4.84
1888 1953 9.530633 CCTCTGTAAACTAATATAAGAGCGTTT 57.469 33.333 0.00 0.00 0.00 3.60
1933 1998 9.669353 TCTAAACGCTCTTATATTAGTTTACGG 57.331 33.333 0.00 0.00 34.29 4.02
1934 1999 9.669353 CTAAACGCTCTTATATTAGTTTACGGA 57.331 33.333 0.00 0.00 34.29 4.69
1935 2000 8.571461 AAACGCTCTTATATTAGTTTACGGAG 57.429 34.615 0.00 0.00 31.14 4.63
1936 2001 6.675987 ACGCTCTTATATTAGTTTACGGAGG 58.324 40.000 0.00 0.00 0.00 4.30
1937 2002 6.091437 CGCTCTTATATTAGTTTACGGAGGG 58.909 44.000 0.00 0.00 0.00 4.30
1938 2003 6.072286 CGCTCTTATATTAGTTTACGGAGGGA 60.072 42.308 0.00 0.00 34.63 4.20
1939 2004 7.314393 GCTCTTATATTAGTTTACGGAGGGAG 58.686 42.308 0.00 0.00 0.00 4.30
1940 2005 7.039853 GCTCTTATATTAGTTTACGGAGGGAGT 60.040 40.741 0.00 0.00 0.00 3.85
1941 2006 9.512588 CTCTTATATTAGTTTACGGAGGGAGTA 57.487 37.037 0.00 0.00 0.00 2.59
1946 2011 7.672122 ATTAGTTTACGGAGGGAGTATTTCT 57.328 36.000 0.00 0.00 0.00 2.52
1947 2012 8.773033 ATTAGTTTACGGAGGGAGTATTTCTA 57.227 34.615 0.00 0.00 0.00 2.10
1948 2013 8.593945 TTAGTTTACGGAGGGAGTATTTCTAA 57.406 34.615 0.00 0.00 0.00 2.10
1949 2014 7.110043 AGTTTACGGAGGGAGTATTTCTAAG 57.890 40.000 0.00 0.00 0.00 2.18
1950 2015 6.666980 AGTTTACGGAGGGAGTATTTCTAAGT 59.333 38.462 0.00 0.00 0.00 2.24
1956 2021 6.239345 CGGAGGGAGTATTTCTAAGTTGCTAT 60.239 42.308 0.00 0.00 0.00 2.97
2006 2081 3.763057 ACCAAGAGTCCAAATACCCAAC 58.237 45.455 0.00 0.00 0.00 3.77
2015 2090 8.116026 AGAGTCCAAATACCCAACTATTGATTT 58.884 33.333 0.00 0.00 0.00 2.17
2016 2091 8.066612 AGTCCAAATACCCAACTATTGATTTG 57.933 34.615 0.00 0.00 34.63 2.32
2019 2094 7.671819 TCCAAATACCCAACTATTGATTTGTCA 59.328 33.333 10.68 0.00 33.77 3.58
2054 2129 4.328169 GGCTTCAATAAAATTCAGCACTGC 59.672 41.667 0.00 0.00 0.00 4.40
2181 2323 8.856103 GGGTAATTTACTGGCATGTAAACATAT 58.144 33.333 18.12 11.06 42.72 1.78
2182 2324 9.677567 GGTAATTTACTGGCATGTAAACATATG 57.322 33.333 18.12 0.00 42.72 1.78
2202 2347 9.376075 ACATATGTTTTTGTGACAATGTTTCAA 57.624 25.926 1.41 0.00 31.23 2.69
2238 2383 6.016276 GTGTCATTTTTCTTGGTGTACTGGAT 60.016 38.462 0.00 0.00 0.00 3.41
2240 2385 7.721842 TGTCATTTTTCTTGGTGTACTGGATTA 59.278 33.333 0.00 0.00 0.00 1.75
2247 2392 7.260387 TCTTGGTGTACTGGATTATGGTTAA 57.740 36.000 0.00 0.00 0.00 2.01
2254 2399 7.704899 GTGTACTGGATTATGGTTAAATTTGCC 59.295 37.037 0.00 3.90 0.00 4.52
2280 2425 2.222007 TGCGATGCTTTTGTTGCTTT 57.778 40.000 0.00 0.00 0.00 3.51
2340 2487 5.957771 ACTTCAGCCTTACCATATCTGAA 57.042 39.130 0.00 0.00 40.28 3.02
2369 2517 3.837213 ACAATTGCGACTTCTTGATGG 57.163 42.857 5.05 0.00 0.00 3.51
2372 2520 4.154195 ACAATTGCGACTTCTTGATGGTAC 59.846 41.667 5.05 0.00 0.00 3.34
2423 2571 5.990668 TCCCCTTTATAAGCTTGACTCTTC 58.009 41.667 9.86 0.00 0.00 2.87
2445 2593 6.872628 TCAGTCTTGATGATGATTTATGCC 57.127 37.500 0.00 0.00 0.00 4.40
2451 2599 8.242053 GTCTTGATGATGATTTATGCCCATTAG 58.758 37.037 0.00 0.00 0.00 1.73
2526 2674 5.644188 TCAATCCCAGGATTTTTCTTCTGT 58.356 37.500 9.26 0.00 42.30 3.41
2599 2747 4.910195 TGCATTCTGTATTCAGGTCTGTT 58.090 39.130 0.00 0.00 41.59 3.16
2653 2802 7.309377 GCATTGCTAGAATAATTATGGGCTGAA 60.309 37.037 0.16 0.00 0.00 3.02
2667 2816 4.922206 TGGGCTGAAGTCTTCATAAACAT 58.078 39.130 15.60 0.00 39.30 2.71
2671 2820 6.767902 GGGCTGAAGTCTTCATAAACATGATA 59.232 38.462 15.60 0.00 39.30 2.15
2756 2935 3.035363 TGGCGGTATTCTCTTGGTATGA 58.965 45.455 0.00 0.00 0.00 2.15
2780 2959 7.923414 AGTTCACTCAAAGTTTGTAAAGAGT 57.077 32.000 15.08 8.10 36.84 3.24
2816 2998 7.542025 ACATTCCTATTTTCTGTCATTCTTGC 58.458 34.615 0.00 0.00 0.00 4.01
2839 3021 5.287035 GCAAACCTCTTTCATTATTTCAGCG 59.713 40.000 0.00 0.00 0.00 5.18
2841 3023 6.817765 AACCTCTTTCATTATTTCAGCGAA 57.182 33.333 0.00 0.00 0.00 4.70
2864 3047 9.140286 CGAACTACATATTTTCTCTTTCTCACA 57.860 33.333 0.00 0.00 0.00 3.58
2912 3097 6.575162 TGTCGAGCATGACATATATGTACT 57.425 37.500 18.28 12.84 43.62 2.73
2913 3098 6.612306 TGTCGAGCATGACATATATGTACTC 58.388 40.000 18.28 18.52 43.62 2.59
2914 3099 6.030849 GTCGAGCATGACATATATGTACTCC 58.969 44.000 18.28 6.82 41.95 3.85
2915 3100 5.125578 TCGAGCATGACATATATGTACTCCC 59.874 44.000 18.28 6.46 41.95 4.30
2916 3101 5.126222 CGAGCATGACATATATGTACTCCCT 59.874 44.000 18.28 10.84 41.95 4.20
2917 3102 6.537453 AGCATGACATATATGTACTCCCTC 57.463 41.667 18.28 5.08 41.95 4.30
2918 3103 5.423610 AGCATGACATATATGTACTCCCTCC 59.576 44.000 18.28 4.38 41.95 4.30
2919 3104 5.679894 GCATGACATATATGTACTCCCTCCG 60.680 48.000 18.28 2.00 41.95 4.63
2920 3105 5.251182 TGACATATATGTACTCCCTCCGA 57.749 43.478 18.28 0.00 41.95 4.55
2921 3106 5.827756 TGACATATATGTACTCCCTCCGAT 58.172 41.667 18.28 0.00 41.95 4.18
2922 3107 5.886474 TGACATATATGTACTCCCTCCGATC 59.114 44.000 18.28 2.34 41.95 3.69
2923 3108 5.202004 ACATATATGTACTCCCTCCGATCC 58.798 45.833 16.85 0.00 39.68 3.36
2924 3109 3.827817 ATATGTACTCCCTCCGATCCA 57.172 47.619 0.00 0.00 0.00 3.41
2925 3110 2.704190 ATGTACTCCCTCCGATCCAT 57.296 50.000 0.00 0.00 0.00 3.41
2926 3111 3.827817 ATGTACTCCCTCCGATCCATA 57.172 47.619 0.00 0.00 0.00 2.74
2927 3112 3.827817 TGTACTCCCTCCGATCCATAT 57.172 47.619 0.00 0.00 0.00 1.78
2928 3113 4.127918 TGTACTCCCTCCGATCCATATT 57.872 45.455 0.00 0.00 0.00 1.28
2929 3114 5.265290 TGTACTCCCTCCGATCCATATTA 57.735 43.478 0.00 0.00 0.00 0.98
2930 3115 5.262009 TGTACTCCCTCCGATCCATATTAG 58.738 45.833 0.00 0.00 0.00 1.73
2931 3116 4.405756 ACTCCCTCCGATCCATATTAGT 57.594 45.455 0.00 0.00 0.00 2.24
2932 3117 4.753186 ACTCCCTCCGATCCATATTAGTT 58.247 43.478 0.00 0.00 0.00 2.24
2933 3118 4.528596 ACTCCCTCCGATCCATATTAGTTG 59.471 45.833 0.00 0.00 0.00 3.16
2934 3119 4.489737 TCCCTCCGATCCATATTAGTTGT 58.510 43.478 0.00 0.00 0.00 3.32
2935 3120 4.527038 TCCCTCCGATCCATATTAGTTGTC 59.473 45.833 0.00 0.00 0.00 3.18
2936 3121 4.486090 CCTCCGATCCATATTAGTTGTCG 58.514 47.826 0.00 0.00 0.00 4.35
2937 3122 3.909430 TCCGATCCATATTAGTTGTCGC 58.091 45.455 0.00 0.00 0.00 5.19
2938 3123 3.572682 TCCGATCCATATTAGTTGTCGCT 59.427 43.478 0.00 0.00 0.00 4.93
2939 3124 3.921021 CCGATCCATATTAGTTGTCGCTC 59.079 47.826 0.00 0.00 0.00 5.03
2940 3125 4.546570 CGATCCATATTAGTTGTCGCTCA 58.453 43.478 0.00 0.00 0.00 4.26
2941 3126 4.982295 CGATCCATATTAGTTGTCGCTCAA 59.018 41.667 0.00 0.00 0.00 3.02
2942 3127 5.462068 CGATCCATATTAGTTGTCGCTCAAA 59.538 40.000 0.00 0.00 37.81 2.69
2943 3128 6.562270 CGATCCATATTAGTTGTCGCTCAAAC 60.562 42.308 0.00 0.00 37.81 2.93
2944 3129 4.565166 TCCATATTAGTTGTCGCTCAAACG 59.435 41.667 0.00 0.00 37.81 3.60
2945 3130 4.260212 CCATATTAGTTGTCGCTCAAACGG 60.260 45.833 0.00 0.00 37.81 4.44
2946 3131 2.512485 TTAGTTGTCGCTCAAACGGA 57.488 45.000 0.00 0.00 37.81 4.69
2947 3132 2.736144 TAGTTGTCGCTCAAACGGAT 57.264 45.000 0.00 0.00 37.81 4.18
2948 3133 1.148310 AGTTGTCGCTCAAACGGATG 58.852 50.000 0.00 0.00 37.81 3.51
2949 3134 0.865769 GTTGTCGCTCAAACGGATGT 59.134 50.000 0.00 0.00 37.81 3.06
2950 3135 2.063266 GTTGTCGCTCAAACGGATGTA 58.937 47.619 0.00 0.00 37.81 2.29
2951 3136 1.990799 TGTCGCTCAAACGGATGTAG 58.009 50.000 0.00 0.00 0.00 2.74
2952 3137 0.645868 GTCGCTCAAACGGATGTAGC 59.354 55.000 0.00 0.00 0.00 3.58
2953 3138 0.530744 TCGCTCAAACGGATGTAGCT 59.469 50.000 0.00 0.00 0.00 3.32
2954 3139 1.746787 TCGCTCAAACGGATGTAGCTA 59.253 47.619 0.00 0.00 0.00 3.32
2955 3140 2.120232 CGCTCAAACGGATGTAGCTAG 58.880 52.381 0.00 0.00 0.00 3.42
2956 3141 1.861575 GCTCAAACGGATGTAGCTAGC 59.138 52.381 6.62 6.62 0.00 3.42
2957 3142 2.738643 GCTCAAACGGATGTAGCTAGCA 60.739 50.000 18.83 0.00 0.00 3.49
2958 3143 2.860735 CTCAAACGGATGTAGCTAGCAC 59.139 50.000 18.83 13.33 0.00 4.40
2959 3144 2.496070 TCAAACGGATGTAGCTAGCACT 59.504 45.455 18.83 0.00 0.00 4.40
2960 3145 2.586258 AACGGATGTAGCTAGCACTG 57.414 50.000 18.83 9.82 0.00 3.66
2961 3146 1.763968 ACGGATGTAGCTAGCACTGA 58.236 50.000 18.83 0.00 0.00 3.41
2962 3147 2.100197 ACGGATGTAGCTAGCACTGAA 58.900 47.619 18.83 0.00 0.00 3.02
2963 3148 2.496070 ACGGATGTAGCTAGCACTGAAA 59.504 45.455 18.83 0.00 0.00 2.69
2964 3149 3.133003 ACGGATGTAGCTAGCACTGAAAT 59.867 43.478 18.83 0.00 0.00 2.17
2965 3150 4.341235 ACGGATGTAGCTAGCACTGAAATA 59.659 41.667 18.83 0.00 0.00 1.40
2966 3151 5.011125 ACGGATGTAGCTAGCACTGAAATAT 59.989 40.000 18.83 1.93 0.00 1.28
2967 3152 5.347093 CGGATGTAGCTAGCACTGAAATATG 59.653 44.000 18.83 0.00 0.00 1.78
2968 3153 6.226787 GGATGTAGCTAGCACTGAAATATGT 58.773 40.000 18.83 0.00 0.00 2.29
2969 3154 6.367422 GGATGTAGCTAGCACTGAAATATGTC 59.633 42.308 18.83 1.58 0.00 3.06
2970 3155 6.471233 TGTAGCTAGCACTGAAATATGTCT 57.529 37.500 18.83 0.00 0.00 3.41
2971 3156 7.582667 TGTAGCTAGCACTGAAATATGTCTA 57.417 36.000 18.83 0.00 0.00 2.59
2972 3157 7.652727 TGTAGCTAGCACTGAAATATGTCTAG 58.347 38.462 18.83 0.00 0.00 2.43
2973 3158 6.968263 AGCTAGCACTGAAATATGTCTAGA 57.032 37.500 18.83 0.00 30.54 2.43
2974 3159 7.537596 AGCTAGCACTGAAATATGTCTAGAT 57.462 36.000 18.83 0.00 30.54 1.98
2975 3160 8.642935 AGCTAGCACTGAAATATGTCTAGATA 57.357 34.615 18.83 0.00 30.54 1.98
2976 3161 8.519526 AGCTAGCACTGAAATATGTCTAGATAC 58.480 37.037 18.83 0.00 30.54 2.24
2977 3162 8.300286 GCTAGCACTGAAATATGTCTAGATACA 58.700 37.037 10.63 0.00 30.54 2.29
2980 3165 8.310382 AGCACTGAAATATGTCTAGATACATCC 58.690 37.037 0.00 0.00 40.52 3.51
2981 3166 8.090831 GCACTGAAATATGTCTAGATACATCCA 58.909 37.037 0.00 0.00 40.52 3.41
2988 3173 9.664332 AATATGTCTAGATACATCCATTTGAGC 57.336 33.333 0.00 0.00 40.52 4.26
2989 3174 6.484364 TGTCTAGATACATCCATTTGAGCA 57.516 37.500 0.00 0.00 0.00 4.26
2990 3175 6.888105 TGTCTAGATACATCCATTTGAGCAA 58.112 36.000 0.00 0.00 0.00 3.91
2991 3176 6.763135 TGTCTAGATACATCCATTTGAGCAAC 59.237 38.462 0.00 0.00 0.00 4.17
2992 3177 6.763135 GTCTAGATACATCCATTTGAGCAACA 59.237 38.462 0.00 0.00 0.00 3.33
2993 3178 7.280876 GTCTAGATACATCCATTTGAGCAACAA 59.719 37.037 0.00 0.00 36.65 2.83
2994 3179 6.446781 AGATACATCCATTTGAGCAACAAG 57.553 37.500 0.00 0.00 39.77 3.16
2995 3180 5.948162 AGATACATCCATTTGAGCAACAAGT 59.052 36.000 0.00 0.00 39.77 3.16
2996 3181 7.112122 AGATACATCCATTTGAGCAACAAGTA 58.888 34.615 0.00 0.00 39.77 2.24
2997 3182 7.611467 AGATACATCCATTTGAGCAACAAGTAA 59.389 33.333 0.00 0.00 39.77 2.24
2998 3183 6.594788 ACATCCATTTGAGCAACAAGTAAT 57.405 33.333 0.00 0.00 39.77 1.89
2999 3184 7.701539 ACATCCATTTGAGCAACAAGTAATA 57.298 32.000 0.00 0.00 39.77 0.98
3000 3185 8.297470 ACATCCATTTGAGCAACAAGTAATAT 57.703 30.769 0.00 0.00 39.77 1.28
3001 3186 8.192774 ACATCCATTTGAGCAACAAGTAATATG 58.807 33.333 0.00 0.00 39.77 1.78
3002 3187 7.099266 TCCATTTGAGCAACAAGTAATATGG 57.901 36.000 13.37 13.37 40.44 2.74
3003 3188 6.889177 TCCATTTGAGCAACAAGTAATATGGA 59.111 34.615 16.07 16.07 43.06 3.41
3004 3189 7.560991 TCCATTTGAGCAACAAGTAATATGGAT 59.439 33.333 16.07 0.00 41.73 3.41
3005 3190 7.864379 CCATTTGAGCAACAAGTAATATGGATC 59.136 37.037 13.92 0.00 41.04 3.36
3006 3191 7.936496 TTTGAGCAACAAGTAATATGGATCA 57.064 32.000 0.00 0.00 39.77 2.92
3007 3192 7.558161 TTGAGCAACAAGTAATATGGATCAG 57.442 36.000 0.00 0.00 34.20 2.90
3008 3193 6.888105 TGAGCAACAAGTAATATGGATCAGA 58.112 36.000 0.00 0.00 0.00 3.27
3009 3194 6.988580 TGAGCAACAAGTAATATGGATCAGAG 59.011 38.462 0.00 0.00 0.00 3.35
3010 3195 6.294473 AGCAACAAGTAATATGGATCAGAGG 58.706 40.000 0.00 0.00 0.00 3.69
3011 3196 5.471456 GCAACAAGTAATATGGATCAGAGGG 59.529 44.000 0.00 0.00 0.00 4.30
3012 3197 6.688922 GCAACAAGTAATATGGATCAGAGGGA 60.689 42.308 0.00 0.00 0.00 4.20
3013 3198 6.678568 ACAAGTAATATGGATCAGAGGGAG 57.321 41.667 0.00 0.00 0.00 4.30
3014 3199 5.012561 ACAAGTAATATGGATCAGAGGGAGC 59.987 44.000 0.00 0.00 0.00 4.70
3015 3200 4.756564 AGTAATATGGATCAGAGGGAGCA 58.243 43.478 0.00 0.00 32.12 4.26
3016 3201 4.530161 AGTAATATGGATCAGAGGGAGCAC 59.470 45.833 0.00 0.00 32.12 4.40
3030 3215 7.283127 TCAGAGGGAGCACAATAAATACAATTC 59.717 37.037 0.00 0.00 0.00 2.17
3031 3216 7.067372 CAGAGGGAGCACAATAAATACAATTCA 59.933 37.037 0.00 0.00 0.00 2.57
3033 3218 7.547227 AGGGAGCACAATAAATACAATTCAAC 58.453 34.615 0.00 0.00 0.00 3.18
3066 3252 9.431690 AGCATGACATGTATGTAGGATAGATAT 57.568 33.333 16.62 0.00 41.95 1.63
3067 3253 9.473640 GCATGACATGTATGTAGGATAGATATG 57.526 37.037 16.62 0.00 41.95 1.78
3114 3300 7.606349 AGAATTTTAGCTAGCCTTTCTTTTGG 58.394 34.615 12.13 0.00 0.00 3.28
3123 3309 4.535526 GCCTTTCTTTTGGCTATGGAAA 57.464 40.909 0.00 0.00 45.26 3.13
3124 3310 4.498241 GCCTTTCTTTTGGCTATGGAAAG 58.502 43.478 12.99 12.99 45.26 2.62
3125 3311 4.220602 GCCTTTCTTTTGGCTATGGAAAGA 59.779 41.667 17.93 6.46 45.26 2.52
3126 3312 5.623141 GCCTTTCTTTTGGCTATGGAAAGAG 60.623 44.000 17.93 12.32 45.26 2.85
3127 3313 5.391312 TTTCTTTTGGCTATGGAAAGAGC 57.609 39.130 0.00 0.00 39.67 4.09
3128 3314 4.032960 TCTTTTGGCTATGGAAAGAGCA 57.967 40.909 0.00 0.00 40.64 4.26
3129 3315 4.012374 TCTTTTGGCTATGGAAAGAGCAG 58.988 43.478 0.00 0.00 40.64 4.24
3130 3316 3.439857 TTTGGCTATGGAAAGAGCAGT 57.560 42.857 0.00 0.00 40.64 4.40
3131 3317 2.698855 TGGCTATGGAAAGAGCAGTC 57.301 50.000 0.00 0.00 40.64 3.51
3132 3318 2.191400 TGGCTATGGAAAGAGCAGTCT 58.809 47.619 0.00 0.00 40.64 3.24
3133 3319 2.093288 TGGCTATGGAAAGAGCAGTCTG 60.093 50.000 0.00 0.00 40.64 3.51
3191 3433 5.856126 TGCTGACTGTATTACCGAAAAAG 57.144 39.130 0.00 0.00 0.00 2.27
3194 3436 5.231702 TGACTGTATTACCGAAAAAGGGT 57.768 39.130 0.00 0.00 41.62 4.34
3353 3598 3.206957 GGCGCCCACCGGAAATAC 61.207 66.667 18.11 0.00 37.44 1.89
3905 4153 0.855349 CCGCGATGCTGACTGTATTC 59.145 55.000 8.23 0.00 0.00 1.75
3906 4154 0.500178 CGCGATGCTGACTGTATTCG 59.500 55.000 0.00 0.00 0.00 3.34
3947 4195 8.583296 CATCTCTAGTGATTGGACTTATCATCA 58.417 37.037 4.54 0.00 34.75 3.07
3978 4228 7.873505 GCGTCCCTCTTCTCTTTATACAATTAT 59.126 37.037 0.00 0.00 0.00 1.28
4019 4269 7.959689 AACTCACTAAATGCATAGCAGATAG 57.040 36.000 0.00 10.46 43.65 2.08
4021 4271 7.504403 ACTCACTAAATGCATAGCAGATAGTT 58.496 34.615 0.00 0.00 43.65 2.24
4049 4514 8.477256 TCTTGTCCTTGTTTTCATGATTTTCTT 58.523 29.630 0.00 0.00 0.00 2.52
4068 4533 8.665643 TTTTCTTGATTTCAGTTCCGTACTTA 57.334 30.769 0.00 0.00 33.85 2.24
4077 4542 6.476243 TCAGTTCCGTACTTAAGCAAAATC 57.524 37.500 1.29 0.00 33.85 2.17
4104 4576 3.053991 CCCACTGTTGGTATGGTATTGGA 60.054 47.826 0.00 0.00 42.10 3.53
4154 4626 3.014623 AGTATGTAGTCTGCGCTGTACA 58.985 45.455 16.37 16.37 0.00 2.90
4159 4631 0.603065 AGTCTGCGCTGTACACATCA 59.397 50.000 9.73 0.00 0.00 3.07
4190 4662 7.928706 GCAAGTAGTATTGAACTGTGATCCTAT 59.071 37.037 0.00 0.00 39.39 2.57
4191 4663 9.469807 CAAGTAGTATTGAACTGTGATCCTATC 57.530 37.037 0.00 0.00 39.39 2.08
4192 4664 8.184304 AGTAGTATTGAACTGTGATCCTATCC 57.816 38.462 0.00 0.00 39.39 2.59
4193 4665 8.007742 AGTAGTATTGAACTGTGATCCTATCCT 58.992 37.037 0.00 0.00 39.39 3.24
4194 4666 9.298250 GTAGTATTGAACTGTGATCCTATCCTA 57.702 37.037 0.00 0.00 39.39 2.94
4211 4683 5.730296 ATCCTACTATCTCGTGAATTGGG 57.270 43.478 0.00 0.00 0.00 4.12
4218 4690 7.787725 ACTATCTCGTGAATTGGGTAATTTC 57.212 36.000 0.00 0.00 36.66 2.17
4241 4713 7.237920 TCGAAAGTTCAACTTGTTTACTACC 57.762 36.000 2.78 0.00 38.66 3.18
4300 4773 6.756074 TGTGCATGCCTTATAAAAATGTTAGC 59.244 34.615 16.68 0.00 0.00 3.09
4333 4806 0.533531 TCAGTCCTGTTGCTGCAGTG 60.534 55.000 16.64 2.00 34.84 3.66
4397 4875 4.662468 TTGTTTTGTAATGGCTGCTCAA 57.338 36.364 0.00 0.00 0.00 3.02
4410 4888 4.139786 GGCTGCTCAATTCCTCATCAATA 58.860 43.478 0.00 0.00 0.00 1.90
4505 4987 5.250313 TCATTTGATGCCCCAATAAAGGTTT 59.750 36.000 0.00 0.00 0.00 3.27
4514 4996 5.675538 CCCCAATAAAGGTTTGTGTTTTCA 58.324 37.500 0.00 0.00 0.00 2.69
4533 5015 8.559536 TGTTTTCACTCAGTGTATTCAATCTTC 58.440 33.333 4.28 0.00 34.79 2.87
4535 5017 8.908786 TTTCACTCAGTGTATTCAATCTTCTT 57.091 30.769 4.28 0.00 34.79 2.52
4537 5019 8.908786 TCACTCAGTGTATTCAATCTTCTTTT 57.091 30.769 4.28 0.00 34.79 2.27
4551 5033 9.730705 TCAATCTTCTTTTATCTCTGACATTGT 57.269 29.630 0.00 0.00 0.00 2.71
4554 5036 8.553459 TCTTCTTTTATCTCTGACATTGTTCC 57.447 34.615 0.00 0.00 0.00 3.62
4555 5037 8.156820 TCTTCTTTTATCTCTGACATTGTTCCA 58.843 33.333 0.00 0.00 0.00 3.53
4565 5047 9.513906 TCTCTGACATTGTTCCATTTTATTACA 57.486 29.630 0.00 0.00 0.00 2.41
4621 5103 8.090788 TCTATTTGTAGCTTCTATTTCCCACT 57.909 34.615 0.00 0.00 0.00 4.00
4696 5373 6.539173 ACCAGGTTAGTGATAAACATGTTGA 58.461 36.000 12.82 4.62 37.02 3.18
4698 5375 6.128007 CCAGGTTAGTGATAAACATGTTGACC 60.128 42.308 12.82 4.58 37.02 4.02
4715 5392 6.969366 TGTTGACCAGTTTTGTCTCATATTG 58.031 36.000 0.00 0.00 33.83 1.90
4734 5412 9.971922 TCATATTGTAGTGATACTTGAGTGATG 57.028 33.333 0.00 0.00 0.00 3.07
4759 5437 3.809279 GGATTTGCTTTTCTGGTTTGTGG 59.191 43.478 0.00 0.00 0.00 4.17
4775 5453 6.722129 TGGTTTGTGGTTTAATAGTAATGCCT 59.278 34.615 5.90 0.00 0.00 4.75
4797 5475 5.159273 TGCCACATTATGAGTGACAACTA 57.841 39.130 0.00 0.00 39.30 2.24
4805 5483 9.587772 ACATTATGAGTGACAACTATGTTCTAC 57.412 33.333 0.00 0.00 40.74 2.59
4811 5489 6.868622 AGTGACAACTATGTTCTACTGATCC 58.131 40.000 0.00 0.00 40.74 3.36
4836 5514 2.165437 GTGAGCTGCTAGTCTAACTGCT 59.835 50.000 12.84 12.84 40.70 4.24
4920 5721 9.971922 AGATTCTGTATTTTTCTTGAAAACAGG 57.028 29.630 18.41 7.46 39.87 4.00
4970 5771 2.932614 GTGACATGCTAGGCTGTTGTAG 59.067 50.000 0.00 0.00 0.00 2.74
5001 5802 1.156736 GACCGGTTCCATGTTCACTG 58.843 55.000 9.42 0.00 0.00 3.66
5076 5878 3.407698 TGTGTCATTCGTTGCCAATACT 58.592 40.909 0.00 0.00 0.00 2.12
5153 5956 8.276325 GCAGAAAGTAATTATGATTGGACTACG 58.724 37.037 0.00 0.00 31.78 3.51
5154 5957 9.529325 CAGAAAGTAATTATGATTGGACTACGA 57.471 33.333 0.00 0.00 31.78 3.43
5161 5964 4.553330 ATGATTGGACTACGACCAGTTT 57.447 40.909 0.00 0.00 38.70 2.66
5164 5967 4.020573 TGATTGGACTACGACCAGTTTCAT 60.021 41.667 0.00 0.00 38.70 2.57
5226 6066 7.265673 ACTGTATAATGACCATGTACACTGTC 58.734 38.462 16.10 16.10 0.00 3.51
5230 6070 7.849804 ATAATGACCATGTACACTGTCTTTC 57.150 36.000 21.25 5.66 0.00 2.62
5231 6071 4.681074 TGACCATGTACACTGTCTTTCA 57.319 40.909 20.96 6.60 0.00 2.69
5248 6088 9.438291 CTGTCTTTCAGTTACAAACTTACAATG 57.562 33.333 0.00 0.00 40.46 2.82
5249 6089 8.402472 TGTCTTTCAGTTACAAACTTACAATGG 58.598 33.333 0.00 0.00 40.46 3.16
5250 6090 8.617809 GTCTTTCAGTTACAAACTTACAATGGA 58.382 33.333 0.00 0.00 40.46 3.41
5257 6097 7.230510 AGTTACAAACTTACAATGGATGCTTGA 59.769 33.333 2.10 0.00 39.04 3.02
5265 6105 7.933033 ACTTACAATGGATGCTTGATTTTTGTT 59.067 29.630 4.03 0.00 0.00 2.83
5268 6108 6.203338 ACAATGGATGCTTGATTTTTGTTGAC 59.797 34.615 4.03 0.00 0.00 3.18
5284 6127 9.589461 TTTTTGTTGACCCCAATAACTAGATTA 57.411 29.630 0.00 0.00 33.95 1.75
5360 6967 9.773328 CATACATGTTCAGTATAACCAAAACAG 57.227 33.333 2.30 0.00 31.32 3.16
5407 7014 9.875691 AAATCAAATATTTTCCCTAAGCAGTTC 57.124 29.630 0.00 0.00 0.00 3.01
5408 7015 8.829373 ATCAAATATTTTCCCTAAGCAGTTCT 57.171 30.769 0.00 0.00 0.00 3.01
5409 7016 8.281212 TCAAATATTTTCCCTAAGCAGTTCTC 57.719 34.615 0.00 0.00 0.00 2.87
5410 7017 8.109634 TCAAATATTTTCCCTAAGCAGTTCTCT 58.890 33.333 0.00 0.00 0.00 3.10
5411 7018 8.743714 CAAATATTTTCCCTAAGCAGTTCTCTT 58.256 33.333 0.00 0.00 0.00 2.85
5415 7022 4.054359 TCCCTAAGCAGTTCTCTTCTCT 57.946 45.455 0.00 0.00 0.00 3.10
5419 7028 6.670027 TCCCTAAGCAGTTCTCTTCTCTATTT 59.330 38.462 0.00 0.00 0.00 1.40
5446 7055 0.520404 CTGAAAACGCATGCAGAGCT 59.480 50.000 19.57 0.00 0.00 4.09
5448 7057 0.179179 GAAAACGCATGCAGAGCTCC 60.179 55.000 19.57 0.00 0.00 4.70
5450 7059 2.753009 AAACGCATGCAGAGCTCCCA 62.753 55.000 19.57 8.71 0.00 4.37
5451 7060 2.203167 CGCATGCAGAGCTCCCAT 60.203 61.111 19.57 10.82 0.00 4.00
5452 7061 2.543802 CGCATGCAGAGCTCCCATG 61.544 63.158 27.91 27.91 39.38 3.66
5454 7063 0.179037 GCATGCAGAGCTCCCATGTA 60.179 55.000 30.17 16.99 38.79 2.29
5455 7064 1.590932 CATGCAGAGCTCCCATGTAC 58.409 55.000 25.62 6.17 33.46 2.90
5456 7065 1.134310 CATGCAGAGCTCCCATGTACA 60.134 52.381 25.62 0.00 33.46 2.90
5583 7227 1.208535 CTGGGATACACAGCGGGTTTA 59.791 52.381 0.00 0.00 39.74 2.01
5638 7282 1.359848 CGCGCAGGTCAGTTCTATTT 58.640 50.000 8.75 0.00 0.00 1.40
5734 7381 6.491714 TCCTCTTCCTTCTATTTCTGATGG 57.508 41.667 0.00 0.00 0.00 3.51
5737 7384 7.791766 TCCTCTTCCTTCTATTTCTGATGGTAT 59.208 37.037 0.00 0.00 32.56 2.73
5781 7428 0.109532 TCCTGGCGTGATTGGTTTCA 59.890 50.000 0.00 0.00 0.00 2.69
5788 7435 1.791555 CGTGATTGGTTTCATCGCTGC 60.792 52.381 0.00 0.00 0.00 5.25
5807 7454 0.172578 CGCACTGTCTATGGAACGGA 59.827 55.000 0.00 0.00 0.00 4.69
5827 7474 4.505556 CGGAGAAGTAAAGCCGGTAATTAC 59.494 45.833 7.09 7.09 40.08 1.89
5895 7543 5.067674 TGTCCCATGTTCTTCTTTGTTTCAG 59.932 40.000 0.00 0.00 0.00 3.02
5950 7598 0.944386 TCAAAACTGCGAGGCTTGTC 59.056 50.000 3.19 0.00 0.00 3.18
5954 7602 0.601311 AACTGCGAGGCTTGTCTGTC 60.601 55.000 3.19 0.00 0.00 3.51
6098 7749 5.938710 CAGGTCTTTTTAGTTAGGGGAAGAC 59.061 44.000 5.69 5.69 41.18 3.01
6141 7792 3.370104 AGACCGGATGATCTCAAGAACT 58.630 45.455 9.46 0.00 0.00 3.01
6207 7860 6.371809 TTGATGTCTGTTTGGTTGTAGAAC 57.628 37.500 0.00 0.00 0.00 3.01
6216 7869 7.504238 TCTGTTTGGTTGTAGAACATGGTAAAT 59.496 33.333 5.00 0.00 33.31 1.40
6218 7871 7.285629 TGTTTGGTTGTAGAACATGGTAAATGA 59.714 33.333 5.00 0.00 33.27 2.57
6221 7874 6.653320 TGGTTGTAGAACATGGTAAATGAGAC 59.347 38.462 5.00 0.00 33.27 3.36
6296 7949 1.203050 ACATGGTTTTACCTGCTGCCT 60.203 47.619 0.00 0.00 39.58 4.75
6352 8005 2.761767 TGATGGTGGCATCAAGGAATTG 59.238 45.455 3.70 0.00 38.50 2.32
6354 8007 3.448093 TGGTGGCATCAAGGAATTGTA 57.552 42.857 0.00 0.00 0.00 2.41
6358 8011 3.953612 GTGGCATCAAGGAATTGTATGGA 59.046 43.478 0.00 0.00 0.00 3.41
6371 8024 8.890472 AGGAATTGTATGGACCTTATTATAGCA 58.110 33.333 0.00 0.00 0.00 3.49
6372 8025 9.686683 GGAATTGTATGGACCTTATTATAGCAT 57.313 33.333 0.00 0.00 0.00 3.79
6414 8101 7.384524 TCTAGATTCCAGTTGGATCATCATT 57.615 36.000 12.89 0.22 44.98 2.57
6482 8217 1.432514 GTGCTGTGAAGCGAATCTGA 58.567 50.000 0.00 0.00 37.69 3.27
6483 8218 1.127582 GTGCTGTGAAGCGAATCTGAC 59.872 52.381 0.00 0.00 37.69 3.51
6484 8219 1.001293 TGCTGTGAAGCGAATCTGACT 59.999 47.619 0.00 0.00 37.69 3.41
6485 8220 1.658095 GCTGTGAAGCGAATCTGACTC 59.342 52.381 0.00 0.00 0.00 3.36
6486 8221 1.916651 CTGTGAAGCGAATCTGACTCG 59.083 52.381 3.88 3.88 39.33 4.18
6487 8222 1.269723 TGTGAAGCGAATCTGACTCGT 59.730 47.619 10.34 0.00 38.57 4.18
6488 8223 1.651138 GTGAAGCGAATCTGACTCGTG 59.349 52.381 10.34 0.00 38.57 4.35
6489 8224 1.539827 TGAAGCGAATCTGACTCGTGA 59.460 47.619 10.34 0.00 38.57 4.35
6490 8225 2.030274 TGAAGCGAATCTGACTCGTGAA 60.030 45.455 10.34 0.00 38.57 3.18
6491 8226 1.983972 AGCGAATCTGACTCGTGAAC 58.016 50.000 10.34 0.00 38.57 3.18
6492 8227 0.635731 GCGAATCTGACTCGTGAACG 59.364 55.000 10.34 0.00 38.57 3.95
6493 8228 1.260206 CGAATCTGACTCGTGAACGG 58.740 55.000 0.00 0.00 40.29 4.44
6494 8229 1.401148 CGAATCTGACTCGTGAACGGT 60.401 52.381 0.00 0.00 40.29 4.83
6495 8230 2.673833 GAATCTGACTCGTGAACGGTT 58.326 47.619 2.59 0.00 40.29 4.44
6496 8231 2.349297 ATCTGACTCGTGAACGGTTC 57.651 50.000 13.86 13.86 40.29 3.62
6505 8240 3.176728 TGAACGGTTCACTGCCAAA 57.823 47.368 19.07 0.00 34.08 3.28
6532 8267 1.137404 CATTTCTGCCTTTCCCGCG 59.863 57.895 0.00 0.00 0.00 6.46
6533 8268 2.700773 ATTTCTGCCTTTCCCGCGC 61.701 57.895 0.00 0.00 0.00 6.86
6548 8283 2.507102 CGCGTGCTTCTGGTCGAT 60.507 61.111 0.00 0.00 0.00 3.59
6581 8316 1.526041 GATGAGAGCAAGCATAGCGTG 59.474 52.381 0.54 0.54 40.71 5.34
6604 8339 1.953686 TGAAAAGAACGGAGGGCAAAG 59.046 47.619 0.00 0.00 0.00 2.77
6605 8340 1.954382 GAAAAGAACGGAGGGCAAAGT 59.046 47.619 0.00 0.00 0.00 2.66
6652 8387 4.164413 GGCCCAGACCTAAAAATAGAGAGT 59.836 45.833 0.00 0.00 0.00 3.24
6659 8394 9.454859 CAGACCTAAAAATAGAGAGTTGGATTT 57.545 33.333 0.00 0.00 0.00 2.17
6660 8395 9.454859 AGACCTAAAAATAGAGAGTTGGATTTG 57.545 33.333 0.00 0.00 0.00 2.32
6662 8397 9.232473 ACCTAAAAATAGAGAGTTGGATTTGAC 57.768 33.333 0.00 0.00 0.00 3.18
6663 8398 9.231297 CCTAAAAATAGAGAGTTGGATTTGACA 57.769 33.333 0.00 0.00 0.00 3.58
6666 8401 6.690194 AATAGAGAGTTGGATTTGACATGC 57.310 37.500 0.00 0.00 0.00 4.06
6669 8404 5.809001 AGAGAGTTGGATTTGACATGCTTA 58.191 37.500 0.00 0.00 0.00 3.09
6717 8452 4.946784 AGTGTGCCATTCGATAAAAGTC 57.053 40.909 0.00 0.00 0.00 3.01
6722 8457 3.369756 TGCCATTCGATAAAAGTCACGTC 59.630 43.478 0.00 0.00 0.00 4.34
6739 8474 3.477090 CACGTCAAATGTGTGTCGTTTTC 59.523 43.478 0.00 0.00 33.54 2.29
6750 8485 5.870433 TGTGTGTCGTTTTCTCAAACTCTAA 59.130 36.000 0.00 0.00 40.31 2.10
6773 8509 4.592485 AAATGAACGTATGGGTTTGCAA 57.408 36.364 0.00 0.00 0.00 4.08
6774 8510 4.592485 AATGAACGTATGGGTTTGCAAA 57.408 36.364 8.05 8.05 0.00 3.68
6783 8519 8.911918 ACGTATGGGTTTGCAAATATTCTATA 57.088 30.769 16.21 10.08 0.00 1.31
6806 8542 2.965831 ACTCTCCTGTGAGCAACTAACA 59.034 45.455 0.00 0.00 38.58 2.41
6822 8558 5.526506 ACTAACAAACGAGTACTCCTTGT 57.473 39.130 23.10 23.10 39.65 3.16
6830 8566 0.178903 AGTACTCCTTGTGGGGCTCA 60.179 55.000 0.00 0.00 37.32 4.26
6859 8597 0.679640 TATTTTGGGTGGGCAGAGCG 60.680 55.000 0.00 0.00 0.00 5.03
6860 8598 2.713531 ATTTTGGGTGGGCAGAGCGT 62.714 55.000 0.00 0.00 0.00 5.07
6881 8619 4.415150 CTCAGCCGCCACCACCAT 62.415 66.667 0.00 0.00 0.00 3.55
6889 8627 2.281414 CCACCACCATGTGTCGCA 60.281 61.111 0.00 0.00 34.35 5.10
6891 8629 0.392327 CCACCACCATGTGTCGCATA 60.392 55.000 0.00 0.00 35.74 3.14
6897 8635 0.933097 CCATGTGTCGCATACTGAGC 59.067 55.000 0.00 0.00 35.74 4.26
6911 8649 0.099968 CTGAGCGTTCGTTCGGGATA 59.900 55.000 9.41 0.00 0.00 2.59
6914 8652 2.358582 TGAGCGTTCGTTCGGGATATTA 59.641 45.455 4.83 0.00 0.00 0.98
6917 8655 5.125100 AGCGTTCGTTCGGGATATTATTA 57.875 39.130 4.56 0.00 0.00 0.98
6919 8657 6.161381 AGCGTTCGTTCGGGATATTATTATT 58.839 36.000 4.56 0.00 0.00 1.40
6920 8658 7.315142 AGCGTTCGTTCGGGATATTATTATTA 58.685 34.615 4.56 0.00 0.00 0.98
6921 8659 7.977853 AGCGTTCGTTCGGGATATTATTATTAT 59.022 33.333 4.56 0.00 0.00 1.28
6922 8660 8.598075 GCGTTCGTTCGGGATATTATTATTATT 58.402 33.333 4.56 0.00 0.00 1.40
6983 8734 3.744238 TTTTTGCTGGTTTTCCCTAGC 57.256 42.857 0.00 0.00 39.73 3.42
7001 8752 5.247337 CCCTAGCTTTTGGACCCAATAAAAA 59.753 40.000 1.88 0.00 35.70 1.94
7005 8756 7.744087 AGCTTTTGGACCCAATAAAAATTTC 57.256 32.000 1.88 0.00 35.70 2.17
7006 8757 7.286313 AGCTTTTGGACCCAATAAAAATTTCA 58.714 30.769 1.88 0.00 35.70 2.69
7013 8764 9.114952 TGGACCCAATAAAAATTTCAAAGAAAC 57.885 29.630 0.00 0.00 0.00 2.78
7029 8782 7.746929 TCAAAGAAACAAATTTTGCACGAAAT 58.253 26.923 9.04 0.00 33.10 2.17
7031 8784 8.932963 CAAAGAAACAAATTTTGCACGAAATAC 58.067 29.630 9.04 0.00 0.00 1.89
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
138 139 5.590818 TGTTCTATCTCCTTCCTACTGGTT 58.409 41.667 0.00 0.00 34.23 3.67
285 286 3.436704 CAGAGCGTTTAGGCAGAAAATCA 59.563 43.478 0.00 0.00 34.64 2.57
294 295 4.419522 TTCAATTTCAGAGCGTTTAGGC 57.580 40.909 0.00 0.00 0.00 3.93
305 306 6.155049 ACTTGGTATGGGGATTTCAATTTCAG 59.845 38.462 0.00 0.00 0.00 3.02
313 314 4.278419 GCACATACTTGGTATGGGGATTTC 59.722 45.833 17.90 1.87 46.48 2.17
315 316 3.436470 GGCACATACTTGGTATGGGGATT 60.436 47.826 17.90 0.00 46.48 3.01
434 436 2.546494 CCCGCGATTTGAGATGGGC 61.546 63.158 8.23 0.00 0.00 5.36
449 451 0.106318 ACTACTAGTAGCCCCACCCG 60.106 60.000 26.54 4.37 36.66 5.28
606 620 1.208776 TGTCAGACGACGGGAGATCTA 59.791 52.381 0.00 0.00 45.80 1.98
613 627 0.179161 GATCTGTGTCAGACGACGGG 60.179 60.000 0.00 0.00 43.63 5.28
621 635 1.226802 CGGCCGAGATCTGTGTCAG 60.227 63.158 24.07 0.00 0.00 3.51
622 636 1.037579 ATCGGCCGAGATCTGTGTCA 61.038 55.000 33.87 5.48 0.00 3.58
623 637 0.318275 GATCGGCCGAGATCTGTGTC 60.318 60.000 33.87 19.17 42.68 3.67
624 638 1.736586 GATCGGCCGAGATCTGTGT 59.263 57.895 33.87 14.26 42.68 3.72
625 639 4.643733 GATCGGCCGAGATCTGTG 57.356 61.111 33.87 0.00 42.68 3.66
630 644 1.254284 GGATGGAGATCGGCCGAGAT 61.254 60.000 33.87 23.85 0.00 2.75
717 732 1.135746 GGTCCGACACTCGTGAACTAG 60.136 57.143 3.74 0.00 38.40 2.57
743 758 2.045561 AGATCTCAGATCACCGTCGT 57.954 50.000 17.27 0.00 0.00 4.34
805 820 4.822350 CACTAGGATGAAGATCACCGTCTA 59.178 45.833 0.00 0.00 0.00 2.59
806 821 3.634448 CACTAGGATGAAGATCACCGTCT 59.366 47.826 0.00 0.00 0.00 4.18
807 822 3.381908 ACACTAGGATGAAGATCACCGTC 59.618 47.826 0.00 0.00 0.00 4.79
811 826 4.399004 AGCACACTAGGATGAAGATCAC 57.601 45.455 0.00 0.00 0.00 3.06
812 827 4.342378 GGTAGCACACTAGGATGAAGATCA 59.658 45.833 0.00 0.00 0.00 2.92
814 829 4.290093 TGGTAGCACACTAGGATGAAGAT 58.710 43.478 0.00 0.00 0.00 2.40
817 832 3.369471 GCTTGGTAGCACACTAGGATGAA 60.369 47.826 0.00 0.00 46.95 2.57
848 864 4.034394 CGATGAATCAGAAATTCGGAAGCA 59.966 41.667 0.00 2.36 0.00 3.91
854 870 6.075728 GCAAACATCGATGAATCAGAAATTCG 60.076 38.462 31.33 2.95 0.00 3.34
872 888 2.629617 CTGGAAAAGGGTGAGCAAACAT 59.370 45.455 0.00 0.00 0.00 2.71
930 946 3.960102 CCCCTTTATTGCCAAAGATAGCA 59.040 43.478 4.59 0.00 37.66 3.49
1052 1068 4.330074 CAGGTTGATAACTGGATCGTCAAC 59.670 45.833 7.75 7.75 44.74 3.18
1058 1075 3.209410 CAGGCAGGTTGATAACTGGATC 58.791 50.000 0.00 0.00 35.30 3.36
1061 1078 2.359900 GACAGGCAGGTTGATAACTGG 58.640 52.381 0.00 0.00 35.30 4.00
1110 1140 6.643360 CACAATGTCATCAAACACATGAATGT 59.357 34.615 0.00 0.00 42.84 2.71
1111 1141 6.400621 GCACAATGTCATCAAACACATGAATG 60.401 38.462 0.00 0.00 33.38 2.67
1112 1142 5.636121 GCACAATGTCATCAAACACATGAAT 59.364 36.000 0.00 0.00 33.38 2.57
1113 1143 4.983538 GCACAATGTCATCAAACACATGAA 59.016 37.500 0.00 0.00 33.38 2.57
1114 1144 4.037684 TGCACAATGTCATCAAACACATGA 59.962 37.500 0.00 0.00 33.38 3.07
1266 1298 6.556495 AGCATTGACAGAATAGATAGAGGGAA 59.444 38.462 0.00 0.00 0.00 3.97
1290 1324 7.491696 GTGTCAGCCTAGGTTAACAACTTATAG 59.508 40.741 11.31 0.15 0.00 1.31
1351 1402 7.117812 TGCATAAGAAGAAACGGAAAGAGTTAG 59.882 37.037 0.00 0.00 0.00 2.34
1536 1587 1.064240 ACCCTTGGGAGAAACGTTGTT 60.064 47.619 13.39 0.00 0.00 2.83
1537 1588 0.549469 ACCCTTGGGAGAAACGTTGT 59.451 50.000 13.39 0.00 0.00 3.32
1640 1696 2.359900 ACGCTTTATGGAAGGAAGCAG 58.640 47.619 7.90 3.72 44.49 4.24
1725 1781 1.069978 CAAACAAAATGAAGGCGGGGT 59.930 47.619 0.00 0.00 0.00 4.95
1761 1817 3.036819 TGAGCTTCAGGATGTAGAGCAT 58.963 45.455 0.00 0.00 39.02 3.79
1824 1889 7.383687 TGAAACAGAATATAAAGTCCGTGAGT 58.616 34.615 0.00 0.00 0.00 3.41
1859 1924 8.024285 CGCTCTTATATTAGTTTACAGAGGGAG 58.976 40.741 4.76 0.00 40.49 4.30
1861 1926 7.659186 ACGCTCTTATATTAGTTTACAGAGGG 58.341 38.462 8.36 8.36 42.53 4.30
1907 1972 9.669353 CCGTAAACTAATATAAGAGCGTTTAGA 57.331 33.333 0.00 0.00 30.36 2.10
1908 1973 9.669353 TCCGTAAACTAATATAAGAGCGTTTAG 57.331 33.333 0.00 0.00 30.36 1.85
1909 1974 9.669353 CTCCGTAAACTAATATAAGAGCGTTTA 57.331 33.333 0.00 0.00 0.00 2.01
1910 1975 7.650903 CCTCCGTAAACTAATATAAGAGCGTTT 59.349 37.037 0.00 0.00 0.00 3.60
1911 1976 7.144000 CCTCCGTAAACTAATATAAGAGCGTT 58.856 38.462 0.00 0.00 0.00 4.84
1912 1977 6.294397 CCCTCCGTAAACTAATATAAGAGCGT 60.294 42.308 0.00 0.00 0.00 5.07
1913 1978 6.072286 TCCCTCCGTAAACTAATATAAGAGCG 60.072 42.308 0.00 0.00 0.00 5.03
1914 1979 7.039853 ACTCCCTCCGTAAACTAATATAAGAGC 60.040 40.741 0.00 0.00 0.00 4.09
1915 1980 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
1920 1985 9.377238 AGAAATACTCCCTCCGTAAACTAATAT 57.623 33.333 0.00 0.00 0.00 1.28
1921 1986 8.773033 AGAAATACTCCCTCCGTAAACTAATA 57.227 34.615 0.00 0.00 0.00 0.98
1922 1987 7.672122 AGAAATACTCCCTCCGTAAACTAAT 57.328 36.000 0.00 0.00 0.00 1.73
1923 1988 8.593945 TTAGAAATACTCCCTCCGTAAACTAA 57.406 34.615 0.00 0.00 0.00 2.24
1924 1989 7.836183 ACTTAGAAATACTCCCTCCGTAAACTA 59.164 37.037 0.00 0.00 0.00 2.24
1925 1990 6.666980 ACTTAGAAATACTCCCTCCGTAAACT 59.333 38.462 0.00 0.00 0.00 2.66
1926 1991 6.871844 ACTTAGAAATACTCCCTCCGTAAAC 58.128 40.000 0.00 0.00 0.00 2.01
1927 1992 7.325694 CAACTTAGAAATACTCCCTCCGTAAA 58.674 38.462 0.00 0.00 0.00 2.01
1928 1993 6.628844 GCAACTTAGAAATACTCCCTCCGTAA 60.629 42.308 0.00 0.00 0.00 3.18
1929 1994 5.163478 GCAACTTAGAAATACTCCCTCCGTA 60.163 44.000 0.00 0.00 0.00 4.02
1930 1995 4.382793 GCAACTTAGAAATACTCCCTCCGT 60.383 45.833 0.00 0.00 0.00 4.69
1931 1996 4.120589 GCAACTTAGAAATACTCCCTCCG 58.879 47.826 0.00 0.00 0.00 4.63
1932 1997 5.360649 AGCAACTTAGAAATACTCCCTCC 57.639 43.478 0.00 0.00 0.00 4.30
1947 2012 9.751542 GACTTGACAGTGTATATATAGCAACTT 57.248 33.333 0.00 0.00 31.22 2.66
1948 2013 8.076781 CGACTTGACAGTGTATATATAGCAACT 58.923 37.037 0.00 0.00 31.22 3.16
1949 2014 7.861372 ACGACTTGACAGTGTATATATAGCAAC 59.139 37.037 0.00 0.00 31.22 4.17
1950 2015 7.937649 ACGACTTGACAGTGTATATATAGCAA 58.062 34.615 0.00 0.00 31.22 3.91
1956 2021 7.646526 GCACATTACGACTTGACAGTGTATATA 59.353 37.037 0.00 0.00 31.22 0.86
1968 2041 4.688879 TCTTGGTTAGCACATTACGACTTG 59.311 41.667 0.00 0.00 0.00 3.16
1969 2042 4.890088 TCTTGGTTAGCACATTACGACTT 58.110 39.130 0.00 0.00 0.00 3.01
2006 2081 9.778993 CCTGTTCAAGTTATGACAAATCAATAG 57.221 33.333 0.00 0.00 38.69 1.73
2015 2090 4.713553 TGAAGCCTGTTCAAGTTATGACA 58.286 39.130 0.00 0.00 37.92 3.58
2016 2091 5.689383 TTGAAGCCTGTTCAAGTTATGAC 57.311 39.130 0.00 0.00 37.92 3.06
2054 2129 3.402628 ACTACTGGTGTACAAAGGCAG 57.597 47.619 0.00 3.53 0.00 4.85
2095 2170 5.120830 GCCAGAATACAGTACAGACAGTTTG 59.879 44.000 0.00 0.00 0.00 2.93
2163 2305 8.580720 ACAAAAACATATGTTTACATGCCAGTA 58.419 29.630 29.18 0.00 46.47 2.74
2181 2323 8.315391 TCAATTGAAACATTGTCACAAAAACA 57.685 26.923 5.45 0.00 0.00 2.83
2202 2347 6.455360 AGAAAAATGACACGCCATATCAAT 57.545 33.333 0.00 0.00 0.00 2.57
2238 2383 7.148507 CGCAAATCTTGGCAAATTTAACCATAA 60.149 33.333 11.74 5.29 32.39 1.90
2240 2385 5.122082 CGCAAATCTTGGCAAATTTAACCAT 59.878 36.000 11.74 0.00 32.39 3.55
2247 2392 2.674357 GCATCGCAAATCTTGGCAAATT 59.326 40.909 0.00 1.81 0.00 1.82
2254 2399 4.694177 CAACAAAAGCATCGCAAATCTTG 58.306 39.130 0.00 0.00 0.00 3.02
2280 2425 9.868277 CCAGGTAAAACTCATATTATTGCAAAA 57.132 29.630 1.71 0.00 0.00 2.44
2311 2458 8.664079 AGATATGGTAAGGCTGAAGTTAATGAT 58.336 33.333 0.00 0.00 0.00 2.45
2313 2460 7.933577 TCAGATATGGTAAGGCTGAAGTTAATG 59.066 37.037 0.00 0.00 33.11 1.90
2340 2487 5.167845 AGAAGTCGCAATTGTTTGTGTTTT 58.832 33.333 7.40 0.00 42.66 2.43
2393 2541 6.717084 GTCAAGCTTATAAAGGGGAATAGCAT 59.283 38.462 0.00 0.00 0.00 3.79
2423 2571 5.533528 TGGGCATAAATCATCATCAAGACTG 59.466 40.000 0.00 0.00 0.00 3.51
2445 2593 4.214971 AGCGCTGAAATATGAAGCTAATGG 59.785 41.667 10.39 0.00 34.72 3.16
2451 2599 2.097007 CGAGAGCGCTGAAATATGAAGC 60.097 50.000 18.48 0.00 0.00 3.86
2667 2816 8.893563 ATAAAAACAGGGAGGAAAACATATCA 57.106 30.769 0.00 0.00 0.00 2.15
2671 2820 7.670364 CAAGATAAAAACAGGGAGGAAAACAT 58.330 34.615 0.00 0.00 0.00 2.71
2682 2831 6.152661 TCAATACCCTGCAAGATAAAAACAGG 59.847 38.462 0.00 0.00 46.10 4.00
2683 2832 7.121168 TCTCAATACCCTGCAAGATAAAAACAG 59.879 37.037 0.00 0.00 34.07 3.16
2702 2881 8.835550 ATGATCCTAGTGATAGCATCTCAATA 57.164 34.615 0.00 0.00 32.41 1.90
2756 2935 7.923414 ACTCTTTACAAACTTTGAGTGAACT 57.077 32.000 8.55 0.00 34.09 3.01
2791 2970 7.177216 TGCAAGAATGACAGAAAATAGGAATGT 59.823 33.333 0.00 0.00 0.00 2.71
2792 2971 7.541162 TGCAAGAATGACAGAAAATAGGAATG 58.459 34.615 0.00 0.00 0.00 2.67
2807 2986 6.409524 AATGAAAGAGGTTTGCAAGAATGA 57.590 33.333 0.00 0.00 0.00 2.57
2808 2987 8.767478 AATAATGAAAGAGGTTTGCAAGAATG 57.233 30.769 0.00 0.00 0.00 2.67
2809 2988 9.428097 GAAATAATGAAAGAGGTTTGCAAGAAT 57.572 29.630 0.00 0.00 0.00 2.40
2816 2998 6.611381 TCGCTGAAATAATGAAAGAGGTTTG 58.389 36.000 0.00 0.00 0.00 2.93
2868 3051 8.201464 TCGACAAAGTAAGGATTATGATAGCAA 58.799 33.333 0.00 0.00 30.46 3.91
2892 3077 5.126222 AGGGAGTACATATATGTCATGCTCG 59.874 44.000 21.49 0.00 41.97 5.03
2912 3097 4.489737 ACAACTAATATGGATCGGAGGGA 58.510 43.478 0.00 0.00 0.00 4.20
2913 3098 4.618460 CGACAACTAATATGGATCGGAGGG 60.618 50.000 0.00 0.00 0.00 4.30
2914 3099 4.486090 CGACAACTAATATGGATCGGAGG 58.514 47.826 0.00 0.00 0.00 4.30
2915 3100 3.921021 GCGACAACTAATATGGATCGGAG 59.079 47.826 0.00 0.00 0.00 4.63
2916 3101 3.572682 AGCGACAACTAATATGGATCGGA 59.427 43.478 0.00 0.00 0.00 4.55
2917 3102 3.914312 AGCGACAACTAATATGGATCGG 58.086 45.455 0.00 0.00 0.00 4.18
2918 3103 4.546570 TGAGCGACAACTAATATGGATCG 58.453 43.478 0.00 0.00 0.00 3.69
2919 3104 6.562270 CGTTTGAGCGACAACTAATATGGATC 60.562 42.308 0.00 0.00 38.29 3.36
2920 3105 5.234329 CGTTTGAGCGACAACTAATATGGAT 59.766 40.000 0.00 0.00 38.29 3.41
2921 3106 4.565166 CGTTTGAGCGACAACTAATATGGA 59.435 41.667 0.00 0.00 38.29 3.41
2922 3107 4.260212 CCGTTTGAGCGACAACTAATATGG 60.260 45.833 0.00 0.00 38.29 2.74
2923 3108 4.565166 TCCGTTTGAGCGACAACTAATATG 59.435 41.667 0.00 0.00 38.29 1.78
2924 3109 4.751060 TCCGTTTGAGCGACAACTAATAT 58.249 39.130 0.00 0.00 38.29 1.28
2925 3110 4.177165 TCCGTTTGAGCGACAACTAATA 57.823 40.909 0.00 0.00 38.29 0.98
2926 3111 3.034721 TCCGTTTGAGCGACAACTAAT 57.965 42.857 0.00 0.00 38.29 1.73
2927 3112 2.512485 TCCGTTTGAGCGACAACTAA 57.488 45.000 0.00 0.00 38.29 2.24
2928 3113 2.288579 ACATCCGTTTGAGCGACAACTA 60.289 45.455 0.00 0.00 38.29 2.24
2929 3114 1.148310 CATCCGTTTGAGCGACAACT 58.852 50.000 0.00 0.00 38.29 3.16
2930 3115 0.865769 ACATCCGTTTGAGCGACAAC 59.134 50.000 0.00 0.00 38.29 3.32
2931 3116 2.333926 CTACATCCGTTTGAGCGACAA 58.666 47.619 0.00 0.00 36.65 3.18
2932 3117 1.990799 CTACATCCGTTTGAGCGACA 58.009 50.000 0.00 0.00 0.00 4.35
2933 3118 0.645868 GCTACATCCGTTTGAGCGAC 59.354 55.000 0.00 0.00 0.00 5.19
2934 3119 0.530744 AGCTACATCCGTTTGAGCGA 59.469 50.000 0.00 0.00 38.20 4.93
2935 3120 2.120232 CTAGCTACATCCGTTTGAGCG 58.880 52.381 0.00 0.00 38.20 5.03
2936 3121 1.861575 GCTAGCTACATCCGTTTGAGC 59.138 52.381 7.70 0.00 0.00 4.26
2937 3122 2.860735 GTGCTAGCTACATCCGTTTGAG 59.139 50.000 17.23 0.00 0.00 3.02
2938 3123 2.496070 AGTGCTAGCTACATCCGTTTGA 59.504 45.455 17.23 0.00 0.00 2.69
2939 3124 2.604914 CAGTGCTAGCTACATCCGTTTG 59.395 50.000 17.23 1.93 0.00 2.93
2940 3125 2.496070 TCAGTGCTAGCTACATCCGTTT 59.504 45.455 17.23 0.00 0.00 3.60
2941 3126 2.100197 TCAGTGCTAGCTACATCCGTT 58.900 47.619 17.23 0.00 0.00 4.44
2942 3127 1.763968 TCAGTGCTAGCTACATCCGT 58.236 50.000 17.23 0.00 0.00 4.69
2943 3128 2.871182 TTCAGTGCTAGCTACATCCG 57.129 50.000 17.23 3.66 0.00 4.18
2944 3129 6.226787 ACATATTTCAGTGCTAGCTACATCC 58.773 40.000 17.23 0.00 0.00 3.51
2945 3130 7.151308 AGACATATTTCAGTGCTAGCTACATC 58.849 38.462 17.23 1.66 0.00 3.06
2946 3131 7.060383 AGACATATTTCAGTGCTAGCTACAT 57.940 36.000 17.23 5.01 0.00 2.29
2947 3132 6.471233 AGACATATTTCAGTGCTAGCTACA 57.529 37.500 17.23 0.00 0.00 2.74
2948 3133 7.877003 TCTAGACATATTTCAGTGCTAGCTAC 58.123 38.462 17.23 12.27 0.00 3.58
2949 3134 8.642935 ATCTAGACATATTTCAGTGCTAGCTA 57.357 34.615 17.23 0.00 0.00 3.32
2950 3135 6.968263 TCTAGACATATTTCAGTGCTAGCT 57.032 37.500 17.23 0.00 0.00 3.32
2951 3136 8.300286 TGTATCTAGACATATTTCAGTGCTAGC 58.700 37.037 8.10 8.10 0.00 3.42
2954 3139 8.310382 GGATGTATCTAGACATATTTCAGTGCT 58.690 37.037 0.00 0.00 40.18 4.40
2955 3140 8.090831 TGGATGTATCTAGACATATTTCAGTGC 58.909 37.037 0.00 0.00 40.18 4.40
2962 3147 9.664332 GCTCAAATGGATGTATCTAGACATATT 57.336 33.333 0.00 0.00 40.18 1.28
2963 3148 8.819845 TGCTCAAATGGATGTATCTAGACATAT 58.180 33.333 0.00 0.00 40.18 1.78
2964 3149 8.193953 TGCTCAAATGGATGTATCTAGACATA 57.806 34.615 0.00 0.00 40.18 2.29
2965 3150 7.071069 TGCTCAAATGGATGTATCTAGACAT 57.929 36.000 0.00 0.00 42.82 3.06
2966 3151 6.484364 TGCTCAAATGGATGTATCTAGACA 57.516 37.500 0.00 0.00 0.00 3.41
2967 3152 6.763135 TGTTGCTCAAATGGATGTATCTAGAC 59.237 38.462 0.00 0.00 0.00 2.59
2968 3153 6.888105 TGTTGCTCAAATGGATGTATCTAGA 58.112 36.000 0.00 0.00 0.00 2.43
2969 3154 7.281774 ACTTGTTGCTCAAATGGATGTATCTAG 59.718 37.037 0.00 0.00 35.48 2.43
2970 3155 7.112122 ACTTGTTGCTCAAATGGATGTATCTA 58.888 34.615 0.00 0.00 35.48 1.98
2971 3156 5.948162 ACTTGTTGCTCAAATGGATGTATCT 59.052 36.000 0.00 0.00 35.48 1.98
2972 3157 6.199937 ACTTGTTGCTCAAATGGATGTATC 57.800 37.500 0.00 0.00 35.48 2.24
2973 3158 7.701539 TTACTTGTTGCTCAAATGGATGTAT 57.298 32.000 0.00 0.00 35.48 2.29
2974 3159 7.701539 ATTACTTGTTGCTCAAATGGATGTA 57.298 32.000 0.00 0.00 35.48 2.29
2975 3160 6.594788 ATTACTTGTTGCTCAAATGGATGT 57.405 33.333 0.00 0.00 35.48 3.06
2976 3161 7.650504 CCATATTACTTGTTGCTCAAATGGATG 59.349 37.037 12.87 6.78 39.71 3.51
2977 3162 7.560991 TCCATATTACTTGTTGCTCAAATGGAT 59.439 33.333 15.03 2.89 40.51 3.41
2978 3163 6.889177 TCCATATTACTTGTTGCTCAAATGGA 59.111 34.615 15.03 15.03 41.85 3.41
2979 3164 7.099266 TCCATATTACTTGTTGCTCAAATGG 57.901 36.000 12.37 12.37 39.17 3.16
2980 3165 8.407832 TGATCCATATTACTTGTTGCTCAAATG 58.592 33.333 0.00 0.00 35.48 2.32
2981 3166 8.523915 TGATCCATATTACTTGTTGCTCAAAT 57.476 30.769 0.00 0.00 35.48 2.32
2982 3167 7.828717 TCTGATCCATATTACTTGTTGCTCAAA 59.171 33.333 0.00 0.00 35.48 2.69
2983 3168 7.337938 TCTGATCCATATTACTTGTTGCTCAA 58.662 34.615 0.00 0.00 34.61 3.02
2984 3169 6.888105 TCTGATCCATATTACTTGTTGCTCA 58.112 36.000 0.00 0.00 0.00 4.26
2985 3170 6.426328 CCTCTGATCCATATTACTTGTTGCTC 59.574 42.308 0.00 0.00 0.00 4.26
2986 3171 6.294473 CCTCTGATCCATATTACTTGTTGCT 58.706 40.000 0.00 0.00 0.00 3.91
2987 3172 5.471456 CCCTCTGATCCATATTACTTGTTGC 59.529 44.000 0.00 0.00 0.00 4.17
2988 3173 6.830912 TCCCTCTGATCCATATTACTTGTTG 58.169 40.000 0.00 0.00 0.00 3.33
2989 3174 6.465035 GCTCCCTCTGATCCATATTACTTGTT 60.465 42.308 0.00 0.00 0.00 2.83
2990 3175 5.012561 GCTCCCTCTGATCCATATTACTTGT 59.987 44.000 0.00 0.00 0.00 3.16
2991 3176 5.012458 TGCTCCCTCTGATCCATATTACTTG 59.988 44.000 0.00 0.00 0.00 3.16
2992 3177 5.012561 GTGCTCCCTCTGATCCATATTACTT 59.987 44.000 0.00 0.00 0.00 2.24
2993 3178 4.530161 GTGCTCCCTCTGATCCATATTACT 59.470 45.833 0.00 0.00 0.00 2.24
2994 3179 4.284490 TGTGCTCCCTCTGATCCATATTAC 59.716 45.833 0.00 0.00 0.00 1.89
2995 3180 4.492646 TGTGCTCCCTCTGATCCATATTA 58.507 43.478 0.00 0.00 0.00 0.98
2996 3181 3.321039 TGTGCTCCCTCTGATCCATATT 58.679 45.455 0.00 0.00 0.00 1.28
2997 3182 2.981921 TGTGCTCCCTCTGATCCATAT 58.018 47.619 0.00 0.00 0.00 1.78
2998 3183 2.477104 TGTGCTCCCTCTGATCCATA 57.523 50.000 0.00 0.00 0.00 2.74
2999 3184 1.588239 TTGTGCTCCCTCTGATCCAT 58.412 50.000 0.00 0.00 0.00 3.41
3000 3185 1.588239 ATTGTGCTCCCTCTGATCCA 58.412 50.000 0.00 0.00 0.00 3.41
3001 3186 3.845781 TTATTGTGCTCCCTCTGATCC 57.154 47.619 0.00 0.00 0.00 3.36
3002 3187 6.291377 TGTATTTATTGTGCTCCCTCTGATC 58.709 40.000 0.00 0.00 0.00 2.92
3003 3188 6.252599 TGTATTTATTGTGCTCCCTCTGAT 57.747 37.500 0.00 0.00 0.00 2.90
3004 3189 5.692115 TGTATTTATTGTGCTCCCTCTGA 57.308 39.130 0.00 0.00 0.00 3.27
3005 3190 6.949352 ATTGTATTTATTGTGCTCCCTCTG 57.051 37.500 0.00 0.00 0.00 3.35
3006 3191 7.118723 TGAATTGTATTTATTGTGCTCCCTCT 58.881 34.615 0.00 0.00 0.00 3.69
3007 3192 7.333528 TGAATTGTATTTATTGTGCTCCCTC 57.666 36.000 0.00 0.00 0.00 4.30
3008 3193 7.397192 AGTTGAATTGTATTTATTGTGCTCCCT 59.603 33.333 0.00 0.00 0.00 4.20
3009 3194 7.547227 AGTTGAATTGTATTTATTGTGCTCCC 58.453 34.615 0.00 0.00 0.00 4.30
3033 3218 9.710900 TCCTACATACATGTCATGCTAATTTAG 57.289 33.333 12.91 10.01 41.97 1.85
3038 3223 8.650143 TCTATCCTACATACATGTCATGCTAA 57.350 34.615 12.91 0.00 41.97 3.09
3066 3252 7.795047 TCTAGAATATCAGCCACTTCAAATCA 58.205 34.615 0.00 0.00 0.00 2.57
3067 3253 8.668510 TTCTAGAATATCAGCCACTTCAAATC 57.331 34.615 0.00 0.00 0.00 2.17
3114 3300 2.559440 CCAGACTGCTCTTTCCATAGC 58.441 52.381 0.00 0.00 39.25 2.97
3115 3301 2.559440 GCCAGACTGCTCTTTCCATAG 58.441 52.381 0.00 0.00 0.00 2.23
3116 3302 1.210478 GGCCAGACTGCTCTTTCCATA 59.790 52.381 0.00 0.00 0.00 2.74
3117 3303 0.034670 GGCCAGACTGCTCTTTCCAT 60.035 55.000 0.00 0.00 0.00 3.41
3118 3304 1.376466 GGCCAGACTGCTCTTTCCA 59.624 57.895 0.00 0.00 0.00 3.53
3119 3305 1.743252 CGGCCAGACTGCTCTTTCC 60.743 63.158 2.24 0.00 0.00 3.13
3120 3306 1.004440 ACGGCCAGACTGCTCTTTC 60.004 57.895 2.24 0.00 0.00 2.62
3121 3307 1.004440 GACGGCCAGACTGCTCTTT 60.004 57.895 2.24 0.00 0.00 2.52
3122 3308 1.476007 AAGACGGCCAGACTGCTCTT 61.476 55.000 2.24 0.00 0.00 2.85
3123 3309 1.476007 AAAGACGGCCAGACTGCTCT 61.476 55.000 2.24 0.00 0.00 4.09
3124 3310 1.004440 AAAGACGGCCAGACTGCTC 60.004 57.895 2.24 0.00 0.00 4.26
3125 3311 1.004440 GAAAGACGGCCAGACTGCT 60.004 57.895 2.24 0.00 0.00 4.24
3126 3312 0.246635 TAGAAAGACGGCCAGACTGC 59.753 55.000 2.24 0.00 0.00 4.40
3127 3313 1.134965 CCTAGAAAGACGGCCAGACTG 60.135 57.143 2.24 0.00 0.00 3.51
3128 3314 1.187087 CCTAGAAAGACGGCCAGACT 58.813 55.000 2.24 0.00 0.00 3.24
3129 3315 1.183549 TCCTAGAAAGACGGCCAGAC 58.816 55.000 2.24 0.00 0.00 3.51
3130 3316 1.933021 TTCCTAGAAAGACGGCCAGA 58.067 50.000 2.24 0.00 0.00 3.86
3131 3317 2.622436 CTTTCCTAGAAAGACGGCCAG 58.378 52.381 10.86 0.00 0.00 4.85
3132 3318 1.338769 GCTTTCCTAGAAAGACGGCCA 60.339 52.381 18.75 0.00 0.00 5.36
3133 3319 1.338769 TGCTTTCCTAGAAAGACGGCC 60.339 52.381 18.75 0.00 0.00 6.13
3176 3418 5.963176 GGAAACCCTTTTTCGGTAATACA 57.037 39.130 0.00 0.00 31.69 2.29
3194 3436 1.075698 TGGAATACAAAGCGGGGGAAA 59.924 47.619 0.00 0.00 0.00 3.13
3353 3598 0.037303 AGCCTTGGTCTGTGGTGATG 59.963 55.000 0.00 0.00 0.00 3.07
3895 4143 1.134175 TGCAGATCGCGAATACAGTCA 59.866 47.619 15.24 2.11 46.97 3.41
3896 4144 1.783711 CTGCAGATCGCGAATACAGTC 59.216 52.381 15.24 4.68 46.97 3.51
3897 4145 1.135139 ACTGCAGATCGCGAATACAGT 59.865 47.619 23.35 23.31 46.97 3.55
3898 4146 1.845266 ACTGCAGATCGCGAATACAG 58.155 50.000 23.35 20.00 46.97 2.74
3899 4147 2.293677 AACTGCAGATCGCGAATACA 57.706 45.000 23.35 8.64 46.97 2.29
3900 4148 2.847254 GCAAACTGCAGATCGCGAATAC 60.847 50.000 23.35 8.13 46.97 1.89
3947 4195 4.762289 AAAGAGAAGAGGGACGCAATAT 57.238 40.909 0.00 0.00 0.00 1.28
3987 4237 8.756864 GCTATGCATTTAGTGAGTTACTAGAAC 58.243 37.037 3.54 0.00 42.57 3.01
3994 4244 8.642432 ACTATCTGCTATGCATTTAGTGAGTTA 58.358 33.333 3.54 0.00 38.13 2.24
3996 4246 7.060383 ACTATCTGCTATGCATTTAGTGAGT 57.940 36.000 3.54 6.43 38.13 3.41
4019 4269 8.424274 AATCATGAAAACAAGGACAAGAAAAC 57.576 30.769 0.00 0.00 0.00 2.43
4021 4271 9.097257 GAAAATCATGAAAACAAGGACAAGAAA 57.903 29.630 0.00 0.00 0.00 2.52
4049 4514 5.543714 TGCTTAAGTACGGAACTGAAATCA 58.456 37.500 4.02 0.00 38.88 2.57
4055 4520 5.313623 CGATTTTGCTTAAGTACGGAACTG 58.686 41.667 4.02 0.00 38.88 3.16
4056 4521 4.390909 CCGATTTTGCTTAAGTACGGAACT 59.609 41.667 12.92 0.00 41.30 3.01
4104 4576 3.877508 GGCAATCGTGGATAGTTAGCTTT 59.122 43.478 0.00 0.00 0.00 3.51
4154 4626 6.239217 TCAATACTACTTGCCAGATGATGT 57.761 37.500 0.00 0.00 0.00 3.06
4159 4631 5.877012 CACAGTTCAATACTACTTGCCAGAT 59.123 40.000 0.00 0.00 34.56 2.90
4190 4662 4.543689 ACCCAATTCACGAGATAGTAGGA 58.456 43.478 0.00 0.00 0.00 2.94
4191 4663 4.939052 ACCCAATTCACGAGATAGTAGG 57.061 45.455 0.00 0.00 0.00 3.18
4192 4664 8.888579 AAATTACCCAATTCACGAGATAGTAG 57.111 34.615 0.00 0.00 33.09 2.57
4193 4665 7.650504 CGAAATTACCCAATTCACGAGATAGTA 59.349 37.037 0.00 0.00 36.67 1.82
4194 4666 6.479001 CGAAATTACCCAATTCACGAGATAGT 59.521 38.462 0.00 0.00 36.67 2.12
4218 4690 7.242914 AGGTAGTAAACAAGTTGAACTTTCG 57.757 36.000 8.03 0.72 36.03 3.46
4241 4713 6.115446 TGGAAAAGCTGTGGATATCAGTAAG 58.885 40.000 4.83 0.00 35.60 2.34
4300 4773 5.243981 ACAGGACTGATGAAATGACTGAAG 58.756 41.667 6.29 0.00 0.00 3.02
4313 4786 0.399454 ACTGCAGCAACAGGACTGAT 59.601 50.000 15.27 0.00 42.21 2.90
4333 4806 5.220710 AGGATTCAGTGACAGTATATGGC 57.779 43.478 0.00 0.00 37.50 4.40
4397 4875 4.600547 TCCAGCCTGATATTGATGAGGAAT 59.399 41.667 0.00 0.00 38.69 3.01
4505 4987 6.993786 TTGAATACACTGAGTGAAAACACA 57.006 33.333 20.97 8.44 36.96 3.72
4528 5010 9.171877 GGAACAATGTCAGAGATAAAAGAAGAT 57.828 33.333 0.00 0.00 0.00 2.40
4594 5076 8.831550 GTGGGAAATAGAAGCTACAAATAGAAG 58.168 37.037 0.00 0.00 0.00 2.85
4636 5118 2.130193 AGGCCAAGCATAGAGAATGGA 58.870 47.619 5.01 0.00 35.99 3.41
4639 5121 2.243221 ACCAAGGCCAAGCATAGAGAAT 59.757 45.455 5.01 0.00 0.00 2.40
4696 5373 7.450074 TCACTACAATATGAGACAAAACTGGT 58.550 34.615 0.00 0.00 0.00 4.00
4715 5392 5.046529 CCAGCATCACTCAAGTATCACTAC 58.953 45.833 0.00 0.00 0.00 2.73
4724 5401 2.753452 AGCAAATCCAGCATCACTCAAG 59.247 45.455 0.00 0.00 0.00 3.02
4734 5412 3.391506 AACCAGAAAAGCAAATCCAGC 57.608 42.857 0.00 0.00 0.00 4.85
4759 5437 5.828299 TGTGGCAGGCATTACTATTAAAC 57.172 39.130 0.00 0.00 0.00 2.01
4775 5453 4.019792 AGTTGTCACTCATAATGTGGCA 57.980 40.909 0.00 0.00 46.48 4.92
4797 5475 4.444022 GCTCACCATGGATCAGTAGAACAT 60.444 45.833 21.47 0.00 0.00 2.71
4805 5483 0.180642 AGCAGCTCACCATGGATCAG 59.819 55.000 21.47 11.66 0.00 2.90
4811 5489 3.131933 AGTTAGACTAGCAGCTCACCATG 59.868 47.826 0.00 0.00 0.00 3.66
4920 5721 5.915196 GTCTGAACAGGTAATTGTTGCTTTC 59.085 40.000 1.93 0.00 41.15 2.62
4970 5771 0.536460 AACCGGTCATGTGGTGGAAC 60.536 55.000 8.04 0.00 38.82 3.62
5096 5898 7.181665 ACTGCATACCTACAATCCTGATATCAT 59.818 37.037 5.72 0.00 0.00 2.45
5199 6039 8.924303 ACAGTGTACATGGTCATTATACAGTAT 58.076 33.333 0.00 0.00 30.19 2.12
5202 6042 7.492524 AGACAGTGTACATGGTCATTATACAG 58.507 38.462 23.48 0.00 32.79 2.74
5226 6066 9.398170 CATCCATTGTAAGTTTGTAACTGAAAG 57.602 33.333 0.00 0.00 41.91 2.62
5230 6070 6.913170 AGCATCCATTGTAAGTTTGTAACTG 58.087 36.000 0.00 0.00 41.91 3.16
5231 6071 7.230510 TCAAGCATCCATTGTAAGTTTGTAACT 59.769 33.333 0.00 0.00 45.46 2.24
5232 6072 7.367285 TCAAGCATCCATTGTAAGTTTGTAAC 58.633 34.615 0.00 0.00 0.00 2.50
5234 6074 7.701539 ATCAAGCATCCATTGTAAGTTTGTA 57.298 32.000 0.00 0.00 0.00 2.41
5235 6075 6.594788 ATCAAGCATCCATTGTAAGTTTGT 57.405 33.333 0.00 0.00 0.00 2.83
5236 6076 7.894376 AAATCAAGCATCCATTGTAAGTTTG 57.106 32.000 0.00 0.00 0.00 2.93
5237 6077 8.776470 CAAAAATCAAGCATCCATTGTAAGTTT 58.224 29.630 0.00 0.00 0.00 2.66
5239 6079 7.444299 ACAAAAATCAAGCATCCATTGTAAGT 58.556 30.769 0.00 0.00 0.00 2.24
5240 6080 7.894376 ACAAAAATCAAGCATCCATTGTAAG 57.106 32.000 0.00 0.00 0.00 2.34
5241 6081 7.930325 TCAACAAAAATCAAGCATCCATTGTAA 59.070 29.630 0.00 0.00 0.00 2.41
5243 6083 6.203338 GTCAACAAAAATCAAGCATCCATTGT 59.797 34.615 0.00 0.00 0.00 2.71
5244 6084 6.347888 GGTCAACAAAAATCAAGCATCCATTG 60.348 38.462 0.00 0.00 0.00 2.82
5245 6085 5.702209 GGTCAACAAAAATCAAGCATCCATT 59.298 36.000 0.00 0.00 0.00 3.16
5246 6086 5.240121 GGTCAACAAAAATCAAGCATCCAT 58.760 37.500 0.00 0.00 0.00 3.41
5247 6087 4.502950 GGGTCAACAAAAATCAAGCATCCA 60.503 41.667 0.00 0.00 0.00 3.41
5248 6088 3.996363 GGGTCAACAAAAATCAAGCATCC 59.004 43.478 0.00 0.00 0.00 3.51
5249 6089 3.996363 GGGGTCAACAAAAATCAAGCATC 59.004 43.478 0.00 0.00 0.00 3.91
5250 6090 3.390639 TGGGGTCAACAAAAATCAAGCAT 59.609 39.130 0.00 0.00 0.00 3.79
5257 6097 8.664669 ATCTAGTTATTGGGGTCAACAAAAAT 57.335 30.769 0.00 0.00 35.48 1.82
5265 6105 9.983024 TTTGATTTAATCTAGTTATTGGGGTCA 57.017 29.630 6.50 0.00 0.00 4.02
5284 6127 8.911965 AGCATTTTAACCAACCAAATTTGATTT 58.088 25.926 19.86 9.19 0.00 2.17
5302 6242 7.725818 TGCATCATTTCAACAAAGCATTTTA 57.274 28.000 0.00 0.00 35.03 1.52
5309 6249 9.361315 TGATTCTAATGCATCATTTCAACAAAG 57.639 29.630 0.00 0.00 35.54 2.77
5338 6279 7.447374 TCCTGTTTTGGTTATACTGAACATG 57.553 36.000 0.00 0.00 0.00 3.21
5358 6965 2.813754 TCGCATCAAAAACCTCTTCCTG 59.186 45.455 0.00 0.00 0.00 3.86
5360 6967 2.552315 TGTCGCATCAAAAACCTCTTCC 59.448 45.455 0.00 0.00 0.00 3.46
5391 6998 5.308237 AGAGAAGAGAACTGCTTAGGGAAAA 59.692 40.000 0.00 0.00 31.04 2.29
5435 7044 0.179037 TACATGGGAGCTCTGCATGC 60.179 55.000 14.64 11.82 0.00 4.06
5583 7227 8.559536 CAGTTCATCACAACTATTGTTACTGTT 58.440 33.333 8.01 0.00 43.23 3.16
5656 7300 5.712917 AGGGGATATAGAGAACGACAAGATC 59.287 44.000 0.00 0.00 0.00 2.75
5788 7435 0.172578 TCCGTTCCATAGACAGTGCG 59.827 55.000 0.00 0.00 0.00 5.34
5807 7454 3.867493 GCGTAATTACCGGCTTTACTTCT 59.133 43.478 10.01 0.00 0.00 2.85
5827 7474 1.998315 CTGATCAGAGGTGAACAAGCG 59.002 52.381 18.34 0.00 35.26 4.68
5895 7543 7.670009 AGCTATGATATGATCAGAAACAAGC 57.330 36.000 0.09 12.09 43.53 4.01
5950 7598 5.334414 GGCAATGTAAAACAGTCAGAGACAG 60.334 44.000 0.00 0.00 34.60 3.51
5954 7602 4.614535 GCTGGCAATGTAAAACAGTCAGAG 60.615 45.833 5.41 0.00 0.00 3.35
6098 7749 2.276732 TGAAACTCCTCCTTTGGCTG 57.723 50.000 0.00 0.00 0.00 4.85
6141 7792 7.500227 GGTTCTATGATGTGAATGGATTTCTCA 59.500 37.037 0.00 0.00 40.88 3.27
6177 7830 7.330262 ACAACCAAACAGACATCAATTTTCTT 58.670 30.769 0.00 0.00 0.00 2.52
6178 7831 6.877236 ACAACCAAACAGACATCAATTTTCT 58.123 32.000 0.00 0.00 0.00 2.52
6186 7839 6.373779 CATGTTCTACAACCAAACAGACATC 58.626 40.000 0.00 0.00 36.44 3.06
6189 7842 4.578928 ACCATGTTCTACAACCAAACAGAC 59.421 41.667 0.00 0.00 36.44 3.51
6207 7860 5.882557 AGCAACTAAGGTCTCATTTACCATG 59.117 40.000 0.00 0.00 39.64 3.66
6216 7869 3.451178 GTCCCATAGCAACTAAGGTCTCA 59.549 47.826 0.00 0.00 0.00 3.27
6218 7871 3.725634 AGTCCCATAGCAACTAAGGTCT 58.274 45.455 0.00 0.00 0.00 3.85
6221 7874 2.945668 GCAAGTCCCATAGCAACTAAGG 59.054 50.000 0.00 0.00 0.00 2.69
6282 7935 1.909700 CTGGAAGGCAGCAGGTAAAA 58.090 50.000 0.00 0.00 0.00 1.52
6296 7949 4.096382 GTGTGAGAAAACAGAAAGCTGGAA 59.904 41.667 0.00 0.00 46.60 3.53
6303 7956 3.869065 AGTCGGTGTGAGAAAACAGAAA 58.131 40.909 0.00 0.00 0.00 2.52
6336 7989 3.953612 TCCATACAATTCCTTGATGCCAC 59.046 43.478 0.00 0.00 36.20 5.01
6369 8022 8.988934 TCTAGAAAATGTCACCGAATATAATGC 58.011 33.333 0.00 0.00 0.00 3.56
6414 8101 5.338871 CCCTTGATACAGCCCAAGTTTACTA 60.339 44.000 0.00 0.00 38.39 1.82
6466 8201 1.916651 CGAGTCAGATTCGCTTCACAG 59.083 52.381 1.97 0.00 0.00 3.66
6487 8222 1.021202 CTTTGGCAGTGAACCGTTCA 58.979 50.000 9.99 9.99 37.33 3.18
6488 8223 1.002792 GACTTTGGCAGTGAACCGTTC 60.003 52.381 4.18 4.18 35.01 3.95
6489 8224 1.021968 GACTTTGGCAGTGAACCGTT 58.978 50.000 0.00 0.00 35.01 4.44
6490 8225 1.157870 CGACTTTGGCAGTGAACCGT 61.158 55.000 0.00 0.00 35.01 4.83
6491 8226 1.569493 CGACTTTGGCAGTGAACCG 59.431 57.895 0.00 0.00 35.01 4.44
6492 8227 1.166531 AGCGACTTTGGCAGTGAACC 61.167 55.000 0.00 0.00 35.01 3.62
6493 8228 0.040958 CAGCGACTTTGGCAGTGAAC 60.041 55.000 0.00 0.00 35.01 3.18
6494 8229 1.165907 CCAGCGACTTTGGCAGTGAA 61.166 55.000 0.00 0.00 35.01 3.18
6495 8230 1.597854 CCAGCGACTTTGGCAGTGA 60.598 57.895 0.00 0.00 35.01 3.41
6496 8231 2.949106 CCAGCGACTTTGGCAGTG 59.051 61.111 0.00 0.00 35.01 3.66
6503 8238 0.242017 GCAGAAATGCCAGCGACTTT 59.758 50.000 0.00 0.00 0.00 2.66
6505 8240 3.583383 GCAGAAATGCCAGCGACT 58.417 55.556 0.00 0.00 0.00 4.18
6532 8267 0.737715 AAGATCGACCAGAAGCACGC 60.738 55.000 0.00 0.00 0.00 5.34
6533 8268 2.186076 GTAAGATCGACCAGAAGCACG 58.814 52.381 0.00 0.00 0.00 5.34
6537 8272 3.436496 GTTCGGTAAGATCGACCAGAAG 58.564 50.000 17.06 4.16 36.72 2.85
6538 8273 2.165030 GGTTCGGTAAGATCGACCAGAA 59.835 50.000 17.06 16.37 36.72 3.02
6548 8283 2.427453 GCTCTCATCTGGTTCGGTAAGA 59.573 50.000 0.00 0.00 0.00 2.10
6581 8316 1.095600 GCCCTCCGTTCTTTTCATCC 58.904 55.000 0.00 0.00 0.00 3.51
6604 8339 5.049405 CACCTGTCATTCTACTTTGGACAAC 60.049 44.000 0.00 0.00 37.96 3.32
6605 8340 5.063204 CACCTGTCATTCTACTTTGGACAA 58.937 41.667 0.00 0.00 37.96 3.18
6652 8387 6.566141 CATGTCATAAGCATGTCAAATCCAA 58.434 36.000 0.00 0.00 38.96 3.53
6660 8395 4.579454 AATGGCATGTCATAAGCATGTC 57.421 40.909 14.32 3.28 45.93 3.06
6662 8397 6.422701 CCTTTAAATGGCATGTCATAAGCATG 59.577 38.462 14.32 3.00 44.62 4.06
6663 8398 6.518493 CCTTTAAATGGCATGTCATAAGCAT 58.482 36.000 14.32 0.00 0.00 3.79
6664 8399 5.904941 CCTTTAAATGGCATGTCATAAGCA 58.095 37.500 14.32 0.00 0.00 3.91
6717 8452 2.730183 AACGACACACATTTGACGTG 57.270 45.000 0.00 0.00 40.32 4.49
6722 8457 5.799936 AGTTTGAGAAAACGACACACATTTG 59.200 36.000 0.00 0.00 37.71 2.32
6750 8485 4.950050 TGCAAACCCATACGTTCATTTTT 58.050 34.783 0.00 0.00 0.00 1.94
6773 8509 8.928448 TGCTCACAGGAGAGTTTATAGAATATT 58.072 33.333 0.00 0.00 44.26 1.28
6774 8510 8.484214 TGCTCACAGGAGAGTTTATAGAATAT 57.516 34.615 0.00 0.00 44.26 1.28
6783 8519 4.141711 TGTTAGTTGCTCACAGGAGAGTTT 60.142 41.667 0.00 0.00 44.26 2.66
6788 8524 3.059597 CGTTTGTTAGTTGCTCACAGGAG 60.060 47.826 0.00 0.00 44.33 3.69
6806 8542 1.346722 CCCCACAAGGAGTACTCGTTT 59.653 52.381 24.44 14.94 38.24 3.60
6822 8558 1.505151 TAACCCTTGCATGAGCCCCA 61.505 55.000 0.00 0.00 41.13 4.96
6830 8566 2.571202 CCACCCAAAATAACCCTTGCAT 59.429 45.455 0.00 0.00 0.00 3.96
6874 8612 0.613260 AGTATGCGACACATGGTGGT 59.387 50.000 0.00 0.00 40.06 4.16
6889 8627 0.179145 CCCGAACGAACGCTCAGTAT 60.179 55.000 0.00 0.00 0.00 2.12
6891 8629 1.874345 ATCCCGAACGAACGCTCAGT 61.874 55.000 0.00 0.00 0.00 3.41
6965 8703 2.675658 AGCTAGGGAAAACCAGCAAA 57.324 45.000 0.00 0.00 42.35 3.68
6966 8704 2.675658 AAGCTAGGGAAAACCAGCAA 57.324 45.000 0.00 0.00 42.35 3.91
6967 8705 2.627699 CAAAAGCTAGGGAAAACCAGCA 59.372 45.455 0.00 0.00 42.35 4.41
6968 8706 2.029020 CCAAAAGCTAGGGAAAACCAGC 60.029 50.000 0.00 0.00 43.89 4.85
6969 8707 3.255888 GTCCAAAAGCTAGGGAAAACCAG 59.744 47.826 2.77 0.00 43.89 4.00
6983 8734 9.949174 CTTTGAAATTTTTATTGGGTCCAAAAG 57.051 29.630 6.52 0.00 39.55 2.27
7001 8752 7.746929 TCGTGCAAAATTTGTTTCTTTGAAAT 58.253 26.923 7.60 0.00 32.87 2.17
7005 8756 7.951706 ATTTCGTGCAAAATTTGTTTCTTTG 57.048 28.000 7.60 0.00 33.99 2.77
7006 8757 8.660373 TGTATTTCGTGCAAAATTTGTTTCTTT 58.340 25.926 7.60 0.00 31.50 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.