Multiple sequence alignment - TraesCS6B01G064400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G064400 chr6B 100.000 2621 0 0 1 2621 42549166 42551786 0.000000e+00 4841.0
1 TraesCS6B01G064400 chr6B 87.642 615 64 10 1722 2327 651031115 651031726 0.000000e+00 704.0
2 TraesCS6B01G064400 chr6B 85.596 604 33 22 1 554 42600559 42601158 3.760000e-163 584.0
3 TraesCS6B01G064400 chr6B 95.745 141 6 0 2390 2530 18747324 18747464 7.300000e-56 228.0
4 TraesCS6B01G064400 chr6B 94.545 55 2 1 2552 2606 10758261 10758314 1.670000e-12 84.2
5 TraesCS6B01G064400 chr3D 88.998 609 55 6 1726 2327 416829864 416829261 0.000000e+00 743.0
6 TraesCS6B01G064400 chr3D 88.399 612 61 7 1722 2327 508766242 508766849 0.000000e+00 728.0
7 TraesCS6B01G064400 chr3D 86.341 615 74 5 1722 2326 489376718 489376104 0.000000e+00 662.0
8 TraesCS6B01G064400 chr3D 95.035 141 7 0 2390 2530 147095901 147096041 3.400000e-54 222.0
9 TraesCS6B01G064400 chr3D 92.647 68 4 1 2555 2621 416829173 416829106 2.150000e-16 97.1
10 TraesCS6B01G064400 chr3D 92.857 56 4 0 2555 2610 7509065 7509010 6.010000e-12 82.4
11 TraesCS6B01G064400 chr3D 89.831 59 6 0 1037 1095 579614504 579614562 2.800000e-10 76.8
12 TraesCS6B01G064400 chr2B 88.725 612 62 5 1722 2327 4507172 4507782 0.000000e+00 741.0
13 TraesCS6B01G064400 chr5D 87.296 614 65 9 1722 2327 453017161 453017769 0.000000e+00 689.0
14 TraesCS6B01G064400 chr5D 95.035 141 7 0 2390 2530 6262163 6262303 3.400000e-54 222.0
15 TraesCS6B01G064400 chr5D 92.647 68 4 1 2555 2621 558844540 558844473 2.150000e-16 97.1
16 TraesCS6B01G064400 chr5B 87.377 610 62 10 1726 2327 683013473 683012871 0.000000e+00 686.0
17 TraesCS6B01G064400 chr5B 95.070 142 5 2 2390 2530 688995780 688995920 3.400000e-54 222.0
18 TraesCS6B01G064400 chr5B 95.455 66 2 1 2557 2621 683012807 683012742 1.280000e-18 104.0
19 TraesCS6B01G064400 chr7B 87.007 608 76 3 1722 2326 55604211 55603604 0.000000e+00 682.0
20 TraesCS6B01G064400 chr7B 96.000 50 2 0 2555 2604 708502759 708502710 6.010000e-12 82.4
21 TraesCS6B01G064400 chr7B 94.118 51 2 1 2552 2602 159658403 159658452 2.800000e-10 76.8
22 TraesCS6B01G064400 chr7D 86.855 601 65 10 1722 2309 622328521 622329120 0.000000e+00 660.0
23 TraesCS6B01G064400 chr6A 89.015 528 32 8 1 503 24173253 24173779 4.760000e-177 630.0
24 TraesCS6B01G064400 chr6A 96.815 314 10 0 1310 1623 24181378 24181691 2.310000e-145 525.0
25 TraesCS6B01G064400 chr6A 86.854 213 13 5 492 701 24174916 24175116 9.440000e-55 224.0
26 TraesCS6B01G064400 chr6A 82.900 269 18 10 1618 1860 24186529 24186795 1.580000e-52 217.0
27 TraesCS6B01G064400 chr6A 82.632 190 15 10 702 874 24181047 24181235 4.520000e-33 152.0
28 TraesCS6B01G064400 chr6A 100.000 28 0 0 875 902 24181255 24181282 5.000000e-03 52.8
29 TraesCS6B01G064400 chr6D 84.580 655 48 18 708 1314 443550779 443551428 3.730000e-168 601.0
30 TraesCS6B01G064400 chr6D 84.139 662 45 22 708 1314 443344900 443345556 1.050000e-163 586.0
31 TraesCS6B01G064400 chr6D 83.837 662 47 22 708 1314 443449068 443449724 2.260000e-160 575.0
32 TraesCS6B01G064400 chr6D 93.671 316 16 4 1294 1607 443345906 443346219 1.100000e-128 470.0
33 TraesCS6B01G064400 chr6D 93.671 316 16 4 1294 1607 443450074 443450387 1.100000e-128 470.0
34 TraesCS6B01G064400 chr6D 93.671 316 16 4 1294 1607 443551778 443552091 1.100000e-128 470.0
35 TraesCS6B01G064400 chr6D 81.489 470 53 14 875 1314 448507102 448507567 3.210000e-94 355.0
36 TraesCS6B01G064400 chr6D 81.301 246 42 4 141 384 7283969 7284212 2.060000e-46 196.0
37 TraesCS6B01G064400 chr2D 96.403 139 5 0 2393 2531 135988266 135988128 2.030000e-56 230.0
38 TraesCS6B01G064400 chr2D 93.548 62 4 0 2552 2613 639526589 639526528 2.780000e-15 93.5
39 TraesCS6B01G064400 chr3B 95.745 141 6 0 2390 2530 101907403 101907543 7.300000e-56 228.0
40 TraesCS6B01G064400 chr3B 78.776 245 50 2 141 384 804168680 804168437 2.090000e-36 163.0
41 TraesCS6B01G064400 chr3B 86.154 65 9 0 1037 1101 735131539 735131475 1.300000e-08 71.3
42 TraesCS6B01G064400 chr3A 95.745 141 6 0 2390 2530 655987822 655987962 7.300000e-56 228.0
43 TraesCS6B01G064400 chr3A 81.720 93 17 0 1003 1095 714758258 714758350 7.780000e-11 78.7
44 TraesCS6B01G064400 chrUn 95.070 142 6 1 2390 2530 414538300 414538441 3.400000e-54 222.0
45 TraesCS6B01G064400 chrUn 83.333 204 30 4 141 342 76213984 76213783 4.450000e-43 185.0
46 TraesCS6B01G064400 chrUn 83.333 204 30 4 141 342 300460885 300460684 4.450000e-43 185.0
47 TraesCS6B01G064400 chr4A 95.070 142 6 1 2390 2530 309477577 309477718 3.400000e-54 222.0
48 TraesCS6B01G064400 chr2A 76.735 245 55 2 141 384 765174860 765175103 4.550000e-28 135.0
49 TraesCS6B01G064400 chr4B 76.068 234 54 2 141 373 647664364 647664596 1.270000e-23 121.0
50 TraesCS6B01G064400 chr4B 93.220 59 4 0 2552 2610 659175452 659175510 1.290000e-13 87.9
51 TraesCS6B01G064400 chr5A 79.874 159 32 0 215 373 687281055 687281213 1.650000e-22 117.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G064400 chr6B 42549166 42551786 2620 False 4841.000000 4841 100.0000 1 2621 1 chr6B.!!$F3 2620
1 TraesCS6B01G064400 chr6B 651031115 651031726 611 False 704.000000 704 87.6420 1722 2327 1 chr6B.!!$F5 605
2 TraesCS6B01G064400 chr6B 42600559 42601158 599 False 584.000000 584 85.5960 1 554 1 chr6B.!!$F4 553
3 TraesCS6B01G064400 chr3D 508766242 508766849 607 False 728.000000 728 88.3990 1722 2327 1 chr3D.!!$F2 605
4 TraesCS6B01G064400 chr3D 489376104 489376718 614 True 662.000000 662 86.3410 1722 2326 1 chr3D.!!$R2 604
5 TraesCS6B01G064400 chr3D 416829106 416829864 758 True 420.050000 743 90.8225 1726 2621 2 chr3D.!!$R3 895
6 TraesCS6B01G064400 chr2B 4507172 4507782 610 False 741.000000 741 88.7250 1722 2327 1 chr2B.!!$F1 605
7 TraesCS6B01G064400 chr5D 453017161 453017769 608 False 689.000000 689 87.2960 1722 2327 1 chr5D.!!$F2 605
8 TraesCS6B01G064400 chr5B 683012742 683013473 731 True 395.000000 686 91.4160 1726 2621 2 chr5B.!!$R1 895
9 TraesCS6B01G064400 chr7B 55603604 55604211 607 True 682.000000 682 87.0070 1722 2326 1 chr7B.!!$R1 604
10 TraesCS6B01G064400 chr7D 622328521 622329120 599 False 660.000000 660 86.8550 1722 2309 1 chr7D.!!$F1 587
11 TraesCS6B01G064400 chr6A 24173253 24175116 1863 False 427.000000 630 87.9345 1 701 2 chr6A.!!$F2 700
12 TraesCS6B01G064400 chr6A 24181047 24181691 644 False 243.266667 525 93.1490 702 1623 3 chr6A.!!$F3 921
13 TraesCS6B01G064400 chr6D 443550779 443552091 1312 False 535.500000 601 89.1255 708 1607 2 chr6D.!!$F5 899
14 TraesCS6B01G064400 chr6D 443344900 443346219 1319 False 528.000000 586 88.9050 708 1607 2 chr6D.!!$F3 899
15 TraesCS6B01G064400 chr6D 443449068 443450387 1319 False 522.500000 575 88.7540 708 1607 2 chr6D.!!$F4 899

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
356 386 0.810648 TCATTTGATGCCCGCTCAAC 59.189 50.0 2.41 0.0 32.57 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1656 3296 0.042431 ACTCATCCTCCAGGCTCAGT 59.958 55.0 0.0 0.0 34.44 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
124 128 7.255277 GCTAGGAAATGTTCTTTGAGTTTGTCT 60.255 37.037 0.00 0.00 0.00 3.41
125 129 7.410120 AGGAAATGTTCTTTGAGTTTGTCTT 57.590 32.000 0.00 0.00 0.00 3.01
173 202 8.958506 GGATAGTAAACTACTGAGAAGTCTTCA 58.041 37.037 14.97 0.00 39.81 3.02
188 217 1.352017 TCTTCAGATGCCAGGCTTTCA 59.648 47.619 14.15 0.00 0.00 2.69
192 221 2.025605 TCAGATGCCAGGCTTTCAAGAT 60.026 45.455 14.15 0.00 0.00 2.40
235 264 1.808945 CAAAATCGCTCTTCAGCCTGT 59.191 47.619 0.00 0.00 43.56 4.00
350 380 4.898829 TGATAAGTTCATTTGATGCCCG 57.101 40.909 0.00 0.00 0.00 6.13
356 386 0.810648 TCATTTGATGCCCGCTCAAC 59.189 50.000 2.41 0.00 32.57 3.18
387 439 2.022934 TCAGCCGCATTTGCATAATGA 58.977 42.857 19.34 0.00 42.21 2.57
412 464 4.705110 CATCACTTGATGGGGGTACATA 57.295 45.455 10.87 0.00 46.09 2.29
417 469 4.821805 CACTTGATGGGGGTACATAATGAC 59.178 45.833 0.00 0.00 0.00 3.06
508 1708 2.616001 GGTGACGGGCCATTAGTGTTTA 60.616 50.000 4.39 0.00 0.00 2.01
509 1709 2.676342 GTGACGGGCCATTAGTGTTTAG 59.324 50.000 4.39 0.00 0.00 1.85
510 1710 2.568062 TGACGGGCCATTAGTGTTTAGA 59.432 45.455 4.39 0.00 0.00 2.10
527 1730 2.522836 AGATGAGGCGCTCAATAGTG 57.477 50.000 7.64 0.00 44.04 2.74
565 1768 1.557832 ACTTCCACCGGCAAATAGCTA 59.442 47.619 0.00 0.00 44.79 3.32
567 1770 1.200519 TCCACCGGCAAATAGCTACT 58.799 50.000 0.00 0.00 44.79 2.57
568 1771 2.390696 TCCACCGGCAAATAGCTACTA 58.609 47.619 0.00 0.00 44.79 1.82
570 1773 2.102588 CCACCGGCAAATAGCTACTACT 59.897 50.000 0.00 0.00 44.79 2.57
571 1774 3.381949 CACCGGCAAATAGCTACTACTC 58.618 50.000 0.00 0.00 44.79 2.59
572 1775 2.364647 ACCGGCAAATAGCTACTACTCC 59.635 50.000 0.00 0.00 44.79 3.85
573 1776 2.364324 CCGGCAAATAGCTACTACTCCA 59.636 50.000 0.00 0.00 44.79 3.86
574 1777 3.381949 CGGCAAATAGCTACTACTCCAC 58.618 50.000 0.00 0.00 44.79 4.02
575 1778 3.181479 CGGCAAATAGCTACTACTCCACA 60.181 47.826 0.00 0.00 44.79 4.17
576 1779 4.501571 CGGCAAATAGCTACTACTCCACAT 60.502 45.833 0.00 0.00 44.79 3.21
577 1780 5.368989 GGCAAATAGCTACTACTCCACATT 58.631 41.667 0.00 0.00 44.79 2.71
619 1822 3.503748 CCCTCACAAACTTGATTCACTCC 59.496 47.826 0.00 0.00 0.00 3.85
642 1845 2.278332 AAAAACAGTCCAGCTCTCCC 57.722 50.000 0.00 0.00 0.00 4.30
649 1852 3.478274 CCAGCTCTCCCAGGGCTC 61.478 72.222 0.00 0.00 33.74 4.70
674 1877 3.575630 TCGAGCTTAGCAACTGTAACTG 58.424 45.455 7.07 0.00 0.00 3.16
705 1908 9.121658 CCCTAGAATAAAATTCTCTTTACCCAC 57.878 37.037 5.46 0.00 0.00 4.61
752 1958 5.023533 TCCTTCTCGGATACAAATTCCTG 57.976 43.478 0.00 0.00 36.69 3.86
753 1959 4.469945 TCCTTCTCGGATACAAATTCCTGT 59.530 41.667 0.00 0.00 36.69 4.00
864 2086 7.874528 GGTTCAACCTCATTCAATTCAAAGATT 59.125 33.333 0.00 0.00 34.73 2.40
933 2182 3.130160 CTCGCCCAAAGCAGGAGC 61.130 66.667 0.00 0.00 44.04 4.70
974 2231 2.418910 CCCCGTCTCATCTGCGAGT 61.419 63.158 0.00 0.00 34.46 4.18
987 2244 2.266627 GCGAGTACCCGATCCCGAT 61.267 63.158 0.00 0.00 38.22 4.18
989 2246 1.289380 GAGTACCCGATCCCGATGC 59.711 63.158 0.00 0.00 38.22 3.91
997 2254 3.916392 GATCCCGATGCGTAGGCCG 62.916 68.421 4.72 2.03 38.85 6.13
1001 2258 1.594293 CCGATGCGTAGGCCGAAAT 60.594 57.895 4.72 0.00 39.56 2.17
1002 2259 1.564622 CGATGCGTAGGCCGAAATG 59.435 57.895 4.72 0.00 39.56 2.32
1162 2432 3.737559 TCTACTACTTCCCCAACGGTA 57.262 47.619 0.00 0.00 0.00 4.02
1209 2479 2.335316 TCTTCTCCCTCGAGCTAGAC 57.665 55.000 6.99 0.00 35.94 2.59
1217 2487 1.334599 CCTCGAGCTAGACGAAGATGC 60.335 57.143 6.99 0.00 39.23 3.91
1221 2491 0.397816 AGCTAGACGAAGATGCCCCT 60.398 55.000 0.00 0.00 0.00 4.79
1225 2495 1.817099 GACGAAGATGCCCCTGCTG 60.817 63.158 0.00 0.00 38.71 4.41
1242 2512 3.712907 GCGGTGAAGGCCCAGGTA 61.713 66.667 0.00 0.00 0.00 3.08
1246 2516 1.615919 CGGTGAAGGCCCAGGTAAAAT 60.616 52.381 0.00 0.00 0.00 1.82
1274 2544 4.507916 CGGCGAGGAGGAGGAGGA 62.508 72.222 0.00 0.00 0.00 3.71
1275 2545 2.520741 GGCGAGGAGGAGGAGGAG 60.521 72.222 0.00 0.00 0.00 3.69
1276 2546 2.520741 GCGAGGAGGAGGAGGAGG 60.521 72.222 0.00 0.00 0.00 4.30
1277 2547 2.520741 CGAGGAGGAGGAGGAGGC 60.521 72.222 0.00 0.00 0.00 4.70
1278 2548 3.024217 GAGGAGGAGGAGGAGGCT 58.976 66.667 0.00 0.00 0.00 4.58
1623 3263 3.961408 GCCACCTGTTAGAGGAATAGAGA 59.039 47.826 1.26 0.00 46.33 3.10
1624 3264 4.038642 GCCACCTGTTAGAGGAATAGAGAG 59.961 50.000 1.26 0.00 46.33 3.20
1625 3265 4.586841 CCACCTGTTAGAGGAATAGAGAGG 59.413 50.000 1.26 0.00 46.33 3.69
1626 3266 5.450453 CACCTGTTAGAGGAATAGAGAGGA 58.550 45.833 1.26 0.00 46.33 3.71
1627 3267 5.894393 CACCTGTTAGAGGAATAGAGAGGAA 59.106 44.000 1.26 0.00 46.33 3.36
1628 3268 6.553100 CACCTGTTAGAGGAATAGAGAGGAAT 59.447 42.308 1.26 0.00 46.33 3.01
1629 3269 6.553100 ACCTGTTAGAGGAATAGAGAGGAATG 59.447 42.308 1.26 0.00 46.33 2.67
1630 3270 6.780031 CCTGTTAGAGGAATAGAGAGGAATGA 59.220 42.308 0.00 0.00 46.33 2.57
1631 3271 7.454380 CCTGTTAGAGGAATAGAGAGGAATGAT 59.546 40.741 0.00 0.00 46.33 2.45
1632 3272 8.789767 TGTTAGAGGAATAGAGAGGAATGATT 57.210 34.615 0.00 0.00 0.00 2.57
1633 3273 8.646004 TGTTAGAGGAATAGAGAGGAATGATTG 58.354 37.037 0.00 0.00 0.00 2.67
1634 3274 6.684897 AGAGGAATAGAGAGGAATGATTGG 57.315 41.667 0.00 0.00 0.00 3.16
1635 3275 6.149616 AGAGGAATAGAGAGGAATGATTGGT 58.850 40.000 0.00 0.00 0.00 3.67
1636 3276 6.043012 AGAGGAATAGAGAGGAATGATTGGTG 59.957 42.308 0.00 0.00 0.00 4.17
1637 3277 5.669447 AGGAATAGAGAGGAATGATTGGTGT 59.331 40.000 0.00 0.00 0.00 4.16
1638 3278 6.846505 AGGAATAGAGAGGAATGATTGGTGTA 59.153 38.462 0.00 0.00 0.00 2.90
1639 3279 7.348274 AGGAATAGAGAGGAATGATTGGTGTAA 59.652 37.037 0.00 0.00 0.00 2.41
1640 3280 8.160106 GGAATAGAGAGGAATGATTGGTGTAAT 58.840 37.037 0.00 0.00 0.00 1.89
1641 3281 8.915057 AATAGAGAGGAATGATTGGTGTAATG 57.085 34.615 0.00 0.00 0.00 1.90
1642 3282 5.128919 AGAGAGGAATGATTGGTGTAATGC 58.871 41.667 0.00 0.00 0.00 3.56
1643 3283 3.879295 AGAGGAATGATTGGTGTAATGCG 59.121 43.478 0.00 0.00 0.00 4.73
1644 3284 3.620488 AGGAATGATTGGTGTAATGCGT 58.380 40.909 0.00 0.00 0.00 5.24
1645 3285 4.016444 AGGAATGATTGGTGTAATGCGTT 58.984 39.130 0.00 0.00 0.00 4.84
1646 3286 4.104776 GGAATGATTGGTGTAATGCGTTG 58.895 43.478 0.08 0.00 0.00 4.10
1647 3287 3.781079 ATGATTGGTGTAATGCGTTGG 57.219 42.857 0.08 0.00 0.00 3.77
1648 3288 2.784347 TGATTGGTGTAATGCGTTGGA 58.216 42.857 0.08 0.00 0.00 3.53
1649 3289 3.351740 TGATTGGTGTAATGCGTTGGAT 58.648 40.909 0.08 0.00 0.00 3.41
1650 3290 4.518249 TGATTGGTGTAATGCGTTGGATA 58.482 39.130 0.08 0.00 0.00 2.59
1651 3291 4.944317 TGATTGGTGTAATGCGTTGGATAA 59.056 37.500 0.08 0.00 0.00 1.75
1652 3292 5.592282 TGATTGGTGTAATGCGTTGGATAAT 59.408 36.000 0.08 0.00 0.00 1.28
1653 3293 6.768381 TGATTGGTGTAATGCGTTGGATAATA 59.232 34.615 0.08 0.00 0.00 0.98
1654 3294 7.446931 TGATTGGTGTAATGCGTTGGATAATAT 59.553 33.333 0.08 0.00 0.00 1.28
1655 3295 7.575414 TTGGTGTAATGCGTTGGATAATATT 57.425 32.000 0.08 0.00 0.00 1.28
1656 3296 8.678593 TTGGTGTAATGCGTTGGATAATATTA 57.321 30.769 0.08 0.00 0.00 0.98
1657 3297 8.090250 TGGTGTAATGCGTTGGATAATATTAC 57.910 34.615 0.08 0.00 33.72 1.89
1658 3298 7.934665 TGGTGTAATGCGTTGGATAATATTACT 59.065 33.333 0.08 0.00 34.06 2.24
1659 3299 8.227791 GGTGTAATGCGTTGGATAATATTACTG 58.772 37.037 0.08 0.00 34.06 2.74
1660 3300 8.984764 GTGTAATGCGTTGGATAATATTACTGA 58.015 33.333 0.08 0.00 34.06 3.41
1661 3301 9.203421 TGTAATGCGTTGGATAATATTACTGAG 57.797 33.333 0.08 0.00 34.06 3.35
1662 3302 6.727824 ATGCGTTGGATAATATTACTGAGC 57.272 37.500 0.00 0.75 0.00 4.26
1663 3303 4.994852 TGCGTTGGATAATATTACTGAGCC 59.005 41.667 0.00 0.00 0.00 4.70
1664 3304 5.221641 TGCGTTGGATAATATTACTGAGCCT 60.222 40.000 0.00 0.00 0.00 4.58
1665 3305 5.120830 GCGTTGGATAATATTACTGAGCCTG 59.879 44.000 0.00 0.00 0.00 4.85
1666 3306 5.639506 CGTTGGATAATATTACTGAGCCTGG 59.360 44.000 0.00 0.00 0.00 4.45
1667 3307 6.518369 CGTTGGATAATATTACTGAGCCTGGA 60.518 42.308 0.00 0.00 0.00 3.86
1668 3308 6.611613 TGGATAATATTACTGAGCCTGGAG 57.388 41.667 0.00 0.00 0.00 3.86
1669 3309 5.485353 TGGATAATATTACTGAGCCTGGAGG 59.515 44.000 0.00 0.00 38.53 4.30
1670 3310 5.721960 GGATAATATTACTGAGCCTGGAGGA 59.278 44.000 0.00 0.00 37.39 3.71
1671 3311 6.385467 GGATAATATTACTGAGCCTGGAGGAT 59.615 42.308 0.00 0.00 37.39 3.24
1672 3312 5.495926 AATATTACTGAGCCTGGAGGATG 57.504 43.478 0.00 0.00 37.39 3.51
1673 3313 2.550277 TTACTGAGCCTGGAGGATGA 57.450 50.000 0.00 0.00 37.39 2.92
1674 3314 2.079170 TACTGAGCCTGGAGGATGAG 57.921 55.000 0.00 0.00 40.71 2.90
1675 3315 0.042431 ACTGAGCCTGGAGGATGAGT 59.958 55.000 0.00 0.00 43.05 3.41
1676 3316 1.289231 ACTGAGCCTGGAGGATGAGTA 59.711 52.381 0.78 0.00 45.87 2.59
1677 3317 2.090831 ACTGAGCCTGGAGGATGAGTAT 60.091 50.000 0.78 0.00 45.87 2.12
1678 3318 3.141083 ACTGAGCCTGGAGGATGAGTATA 59.859 47.826 0.78 0.00 45.87 1.47
1679 3319 4.202770 ACTGAGCCTGGAGGATGAGTATAT 60.203 45.833 0.78 0.00 45.87 0.86
1680 3320 5.015710 ACTGAGCCTGGAGGATGAGTATATA 59.984 44.000 0.78 0.00 45.87 0.86
1681 3321 6.097439 TGAGCCTGGAGGATGAGTATATAT 57.903 41.667 0.00 0.00 37.39 0.86
1682 3322 6.506661 TGAGCCTGGAGGATGAGTATATATT 58.493 40.000 0.00 0.00 37.39 1.28
1683 3323 6.382282 TGAGCCTGGAGGATGAGTATATATTG 59.618 42.308 0.00 0.00 37.39 1.90
1684 3324 6.506661 AGCCTGGAGGATGAGTATATATTGA 58.493 40.000 0.00 0.00 37.39 2.57
1685 3325 6.382570 AGCCTGGAGGATGAGTATATATTGAC 59.617 42.308 0.00 0.00 37.39 3.18
1686 3326 6.155221 GCCTGGAGGATGAGTATATATTGACA 59.845 42.308 0.00 0.00 37.39 3.58
1687 3327 7.551585 CCTGGAGGATGAGTATATATTGACAC 58.448 42.308 0.00 0.00 37.39 3.67
1688 3328 7.398618 CCTGGAGGATGAGTATATATTGACACT 59.601 40.741 0.00 0.00 37.39 3.55
1689 3329 9.467796 CTGGAGGATGAGTATATATTGACACTA 57.532 37.037 0.00 0.00 0.00 2.74
1690 3330 9.467796 TGGAGGATGAGTATATATTGACACTAG 57.532 37.037 0.00 0.00 0.00 2.57
1691 3331 9.469097 GGAGGATGAGTATATATTGACACTAGT 57.531 37.037 0.00 0.00 0.00 2.57
1705 3345 7.484993 TTGACACTAGTAGTAAAATAGGGCA 57.515 36.000 1.57 0.00 0.00 5.36
1706 3346 7.670605 TGACACTAGTAGTAAAATAGGGCAT 57.329 36.000 1.57 0.00 0.00 4.40
1707 3347 8.086143 TGACACTAGTAGTAAAATAGGGCATT 57.914 34.615 1.57 0.00 0.00 3.56
1708 3348 7.985184 TGACACTAGTAGTAAAATAGGGCATTG 59.015 37.037 1.57 0.00 0.00 2.82
1709 3349 7.280356 ACACTAGTAGTAAAATAGGGCATTGG 58.720 38.462 1.57 0.00 0.00 3.16
1710 3350 7.092578 ACACTAGTAGTAAAATAGGGCATTGGT 60.093 37.037 1.57 0.00 0.00 3.67
1711 3351 7.441458 CACTAGTAGTAAAATAGGGCATTGGTC 59.559 40.741 1.57 0.00 0.00 4.02
1712 3352 5.691896 AGTAGTAAAATAGGGCATTGGTCC 58.308 41.667 0.00 0.00 39.90 4.46
1718 3358 2.440980 GGGCATTGGTCCTGGCTC 60.441 66.667 4.88 0.00 39.05 4.70
1719 3359 2.440980 GGCATTGGTCCTGGCTCC 60.441 66.667 0.00 0.00 36.34 4.70
1720 3360 2.440980 GCATTGGTCCTGGCTCCC 60.441 66.667 5.54 0.00 0.00 4.30
1791 3432 4.624364 CACGTGGCTGCTGTGGGA 62.624 66.667 7.95 0.00 0.00 4.37
1793 3434 4.624364 CGTGGCTGCTGTGGGACA 62.624 66.667 0.00 0.00 0.00 4.02
1806 3447 1.390926 GGGACACCCAGGTAGGAGA 59.609 63.158 1.54 0.00 44.65 3.71
1808 3449 1.625508 GGGACACCCAGGTAGGAGAAT 60.626 57.143 1.54 0.00 44.65 2.40
1846 3488 2.732844 ACACCAACCGGGACTAAAAA 57.267 45.000 6.32 0.00 41.15 1.94
1848 3490 2.092267 ACACCAACCGGGACTAAAAAGT 60.092 45.455 6.32 0.00 41.15 2.66
1852 3494 3.404899 CAACCGGGACTAAAAAGTAGCA 58.595 45.455 6.32 0.00 0.00 3.49
1922 3575 1.203137 AGGGTTTTGGAGGGTTTAGGC 60.203 52.381 0.00 0.00 0.00 3.93
1940 3593 6.811253 TTAGGCGTTTCATATTGTGTTTCT 57.189 33.333 0.00 0.00 0.00 2.52
2177 3852 9.788960 ATAGTACACGTTCATGCATATATACAG 57.211 33.333 0.00 0.00 0.00 2.74
2189 3864 9.091784 CATGCATATATACAGTGTAACATCTCC 57.908 37.037 7.16 0.00 41.43 3.71
2322 4000 1.202371 CGTATGCGAGCCTTTGGTAGA 60.202 52.381 0.00 0.00 41.33 2.59
2411 4129 2.911819 TCCCGATTTCGAAATGTTGC 57.088 45.000 27.27 12.04 43.02 4.17
2412 4130 2.155279 TCCCGATTTCGAAATGTTGCA 58.845 42.857 27.27 5.23 43.02 4.08
2413 4131 2.554462 TCCCGATTTCGAAATGTTGCAA 59.446 40.909 27.27 0.00 43.02 4.08
2414 4132 3.004839 TCCCGATTTCGAAATGTTGCAAA 59.995 39.130 27.27 4.28 43.02 3.68
2415 4133 3.364621 CCCGATTTCGAAATGTTGCAAAG 59.635 43.478 27.27 8.22 43.02 2.77
2416 4134 3.181541 CCGATTTCGAAATGTTGCAAAGC 60.182 43.478 27.27 8.94 43.02 3.51
2417 4135 3.181541 CGATTTCGAAATGTTGCAAAGCC 60.182 43.478 27.27 8.25 43.02 4.35
2418 4136 3.451141 TTTCGAAATGTTGCAAAGCCT 57.549 38.095 6.47 0.00 0.00 4.58
2419 4137 2.420628 TCGAAATGTTGCAAAGCCTG 57.579 45.000 0.00 0.00 0.00 4.85
2420 4138 1.000385 TCGAAATGTTGCAAAGCCTGG 60.000 47.619 0.00 0.00 0.00 4.45
2421 4139 1.799544 GAAATGTTGCAAAGCCTGGG 58.200 50.000 0.00 0.00 0.00 4.45
2422 4140 0.397564 AAATGTTGCAAAGCCTGGGG 59.602 50.000 0.00 0.00 0.00 4.96
2423 4141 0.763986 AATGTTGCAAAGCCTGGGGT 60.764 50.000 0.00 0.00 0.00 4.95
2424 4142 0.114168 ATGTTGCAAAGCCTGGGGTA 59.886 50.000 0.00 0.00 0.00 3.69
2425 4143 0.539438 TGTTGCAAAGCCTGGGGTAG 60.539 55.000 0.00 0.00 0.00 3.18
2426 4144 0.251165 GTTGCAAAGCCTGGGGTAGA 60.251 55.000 0.00 0.00 0.00 2.59
2427 4145 0.480690 TTGCAAAGCCTGGGGTAGAA 59.519 50.000 0.00 0.00 0.00 2.10
2428 4146 0.480690 TGCAAAGCCTGGGGTAGAAA 59.519 50.000 0.00 0.00 0.00 2.52
2429 4147 1.133325 TGCAAAGCCTGGGGTAGAAAA 60.133 47.619 0.00 0.00 0.00 2.29
2430 4148 1.967779 GCAAAGCCTGGGGTAGAAAAA 59.032 47.619 0.00 0.00 0.00 1.94
2453 4171 6.783708 AAAGGAAGAAATGTTGTGGTTACA 57.216 33.333 0.00 0.00 34.31 2.41
2454 4172 6.391227 AAGGAAGAAATGTTGTGGTTACAG 57.609 37.500 0.00 0.00 38.23 2.74
2455 4173 4.827284 AGGAAGAAATGTTGTGGTTACAGG 59.173 41.667 0.00 0.00 38.23 4.00
2456 4174 4.825085 GGAAGAAATGTTGTGGTTACAGGA 59.175 41.667 0.00 0.00 38.23 3.86
2457 4175 5.476945 GGAAGAAATGTTGTGGTTACAGGAT 59.523 40.000 0.00 0.00 38.23 3.24
2458 4176 5.964958 AGAAATGTTGTGGTTACAGGATG 57.035 39.130 0.00 0.00 46.00 3.51
2459 4177 4.218417 AGAAATGTTGTGGTTACAGGATGC 59.782 41.667 0.00 0.00 42.53 3.91
2460 4178 2.647683 TGTTGTGGTTACAGGATGCA 57.352 45.000 0.00 0.00 42.53 3.96
2461 4179 2.937519 TGTTGTGGTTACAGGATGCAA 58.062 42.857 0.00 0.00 42.53 4.08
2462 4180 3.495331 TGTTGTGGTTACAGGATGCAAT 58.505 40.909 0.00 0.00 42.53 3.56
2463 4181 3.894427 TGTTGTGGTTACAGGATGCAATT 59.106 39.130 0.00 0.00 42.53 2.32
2464 4182 4.343526 TGTTGTGGTTACAGGATGCAATTT 59.656 37.500 0.00 0.00 42.53 1.82
2465 4183 4.782019 TGTGGTTACAGGATGCAATTTC 57.218 40.909 0.00 0.00 42.53 2.17
2466 4184 3.509575 TGTGGTTACAGGATGCAATTTCC 59.490 43.478 0.00 0.00 42.53 3.13
2467 4185 3.763897 GTGGTTACAGGATGCAATTTCCT 59.236 43.478 1.25 1.25 44.60 3.36
2468 4186 4.016444 TGGTTACAGGATGCAATTTCCTC 58.984 43.478 4.28 0.00 41.78 3.71
2469 4187 4.263905 TGGTTACAGGATGCAATTTCCTCT 60.264 41.667 4.28 0.00 41.78 3.69
2470 4188 4.706962 GGTTACAGGATGCAATTTCCTCTT 59.293 41.667 4.28 0.00 41.78 2.85
2471 4189 5.185828 GGTTACAGGATGCAATTTCCTCTTT 59.814 40.000 4.28 0.00 41.78 2.52
2472 4190 4.796038 ACAGGATGCAATTTCCTCTTTG 57.204 40.909 4.28 0.00 41.78 2.77
2473 4191 4.410099 ACAGGATGCAATTTCCTCTTTGA 58.590 39.130 4.28 0.00 41.78 2.69
2474 4192 4.834496 ACAGGATGCAATTTCCTCTTTGAA 59.166 37.500 4.28 0.00 41.78 2.69
2475 4193 5.482878 ACAGGATGCAATTTCCTCTTTGAAT 59.517 36.000 4.28 0.00 41.78 2.57
2476 4194 6.664816 ACAGGATGCAATTTCCTCTTTGAATA 59.335 34.615 4.28 0.00 41.78 1.75
2477 4195 7.178983 ACAGGATGCAATTTCCTCTTTGAATAA 59.821 33.333 4.28 0.00 41.78 1.40
2478 4196 8.036575 CAGGATGCAATTTCCTCTTTGAATAAA 58.963 33.333 4.28 0.00 41.78 1.40
2479 4197 8.037166 AGGATGCAATTTCCTCTTTGAATAAAC 58.963 33.333 1.25 0.00 39.46 2.01
2480 4198 7.278646 GGATGCAATTTCCTCTTTGAATAAACC 59.721 37.037 0.00 0.00 0.00 3.27
2481 4199 7.301868 TGCAATTTCCTCTTTGAATAAACCT 57.698 32.000 0.00 0.00 0.00 3.50
2482 4200 7.378181 TGCAATTTCCTCTTTGAATAAACCTC 58.622 34.615 0.00 0.00 0.00 3.85
2483 4201 6.528072 GCAATTTCCTCTTTGAATAAACCTCG 59.472 38.462 0.00 0.00 0.00 4.63
2484 4202 7.593825 CAATTTCCTCTTTGAATAAACCTCGT 58.406 34.615 0.00 0.00 0.00 4.18
2485 4203 8.726988 CAATTTCCTCTTTGAATAAACCTCGTA 58.273 33.333 0.00 0.00 0.00 3.43
2486 4204 8.857694 ATTTCCTCTTTGAATAAACCTCGTAA 57.142 30.769 0.00 0.00 0.00 3.18
2487 4205 8.857694 TTTCCTCTTTGAATAAACCTCGTAAT 57.142 30.769 0.00 0.00 0.00 1.89
2488 4206 8.488651 TTCCTCTTTGAATAAACCTCGTAATC 57.511 34.615 0.00 0.00 0.00 1.75
2489 4207 6.755141 TCCTCTTTGAATAAACCTCGTAATCG 59.245 38.462 0.00 0.00 38.55 3.34
2490 4208 6.534079 CCTCTTTGAATAAACCTCGTAATCGT 59.466 38.462 0.00 0.00 38.33 3.73
2491 4209 7.703621 CCTCTTTGAATAAACCTCGTAATCGTA 59.296 37.037 0.00 0.00 38.33 3.43
2492 4210 8.984891 TCTTTGAATAAACCTCGTAATCGTAA 57.015 30.769 0.00 0.00 38.33 3.18
2493 4211 9.421806 TCTTTGAATAAACCTCGTAATCGTAAA 57.578 29.630 0.00 0.00 38.33 2.01
2515 4233 4.350368 AAAATGGGGTTTTTAGTGCTGG 57.650 40.909 0.00 0.00 36.65 4.85
2516 4234 1.937191 ATGGGGTTTTTAGTGCTGGG 58.063 50.000 0.00 0.00 0.00 4.45
2517 4235 0.830023 TGGGGTTTTTAGTGCTGGGC 60.830 55.000 0.00 0.00 0.00 5.36
2518 4236 1.541310 GGGGTTTTTAGTGCTGGGCC 61.541 60.000 0.00 0.00 0.00 5.80
2519 4237 0.541998 GGGTTTTTAGTGCTGGGCCT 60.542 55.000 4.53 0.00 0.00 5.19
2520 4238 1.272258 GGGTTTTTAGTGCTGGGCCTA 60.272 52.381 4.53 0.00 0.00 3.93
2521 4239 2.092323 GGTTTTTAGTGCTGGGCCTAG 58.908 52.381 12.68 12.68 0.00 3.02
2522 4240 1.472878 GTTTTTAGTGCTGGGCCTAGC 59.527 52.381 32.63 32.63 43.95 3.42
2528 4246 4.743018 GCTGGGCCTAGCAAAAGA 57.257 55.556 34.00 0.00 43.17 2.52
2529 4247 2.486796 GCTGGGCCTAGCAAAAGAG 58.513 57.895 34.00 0.00 43.17 2.85
2530 4248 1.661498 GCTGGGCCTAGCAAAAGAGC 61.661 60.000 34.00 6.59 43.17 4.09
2532 4250 0.405585 TGGGCCTAGCAAAAGAGCTT 59.594 50.000 4.53 0.00 43.70 3.74
2533 4251 1.098869 GGGCCTAGCAAAAGAGCTTC 58.901 55.000 0.84 0.00 43.70 3.86
2534 4252 1.614317 GGGCCTAGCAAAAGAGCTTCA 60.614 52.381 0.84 0.00 43.70 3.02
2535 4253 1.742268 GGCCTAGCAAAAGAGCTTCAG 59.258 52.381 0.00 0.00 43.70 3.02
2536 4254 1.742268 GCCTAGCAAAAGAGCTTCAGG 59.258 52.381 0.00 0.00 43.70 3.86
2537 4255 2.616510 GCCTAGCAAAAGAGCTTCAGGA 60.617 50.000 8.54 0.00 43.70 3.86
2538 4256 3.006247 CCTAGCAAAAGAGCTTCAGGAC 58.994 50.000 0.00 0.00 43.70 3.85
2539 4257 2.645838 AGCAAAAGAGCTTCAGGACA 57.354 45.000 0.00 0.00 43.70 4.02
2540 4258 3.151912 AGCAAAAGAGCTTCAGGACAT 57.848 42.857 0.00 0.00 43.70 3.06
2541 4259 3.494332 AGCAAAAGAGCTTCAGGACATT 58.506 40.909 0.00 0.00 43.70 2.71
2542 4260 4.655963 AGCAAAAGAGCTTCAGGACATTA 58.344 39.130 0.00 0.00 43.70 1.90
2543 4261 5.259632 AGCAAAAGAGCTTCAGGACATTAT 58.740 37.500 0.00 0.00 43.70 1.28
2544 4262 5.713861 AGCAAAAGAGCTTCAGGACATTATT 59.286 36.000 0.00 0.00 43.70 1.40
2545 4263 5.803967 GCAAAAGAGCTTCAGGACATTATTG 59.196 40.000 0.00 0.00 0.00 1.90
2546 4264 5.573337 AAAGAGCTTCAGGACATTATTGC 57.427 39.130 0.00 0.00 0.00 3.56
2547 4265 4.226427 AGAGCTTCAGGACATTATTGCA 57.774 40.909 0.00 0.00 0.00 4.08
2548 4266 4.592942 AGAGCTTCAGGACATTATTGCAA 58.407 39.130 0.00 0.00 0.00 4.08
2549 4267 5.198965 AGAGCTTCAGGACATTATTGCAAT 58.801 37.500 17.56 17.56 0.00 3.56
2550 4268 5.655532 AGAGCTTCAGGACATTATTGCAATT 59.344 36.000 18.75 0.00 0.00 2.32
2551 4269 5.899299 AGCTTCAGGACATTATTGCAATTC 58.101 37.500 18.75 8.78 0.00 2.17
2552 4270 5.655532 AGCTTCAGGACATTATTGCAATTCT 59.344 36.000 18.75 2.22 0.00 2.40
2553 4271 6.154021 AGCTTCAGGACATTATTGCAATTCTT 59.846 34.615 18.75 2.25 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 1.859302 TTTGAAGTGTGTTTGCCCCT 58.141 45.000 0.00 0.00 0.00 4.79
74 78 2.092375 AGAGGTACTTTATGCTTGCCCC 60.092 50.000 0.00 0.00 41.55 5.80
124 128 3.111853 ACTTGCGAGTCACATCTTCAA 57.888 42.857 0.00 0.00 0.00 2.69
125 129 2.802247 CAACTTGCGAGTCACATCTTCA 59.198 45.455 7.17 0.00 34.21 3.02
173 202 2.822707 ATCTTGAAAGCCTGGCATCT 57.177 45.000 22.65 3.94 0.00 2.90
188 217 3.424703 AGTGCATTTGTGCCAGTATCTT 58.575 40.909 0.00 0.00 0.00 2.40
192 221 3.133141 TGTAGTGCATTTGTGCCAGTA 57.867 42.857 0.00 0.00 0.00 2.74
235 264 3.265737 ACACTTGCCAATGAGGTATACCA 59.734 43.478 23.87 4.43 40.61 3.25
266 296 2.765689 TGTGGGATTTGGAGGTTTGT 57.234 45.000 0.00 0.00 0.00 2.83
372 402 3.148026 TGTGGTCATTATGCAAATGCG 57.852 42.857 13.50 0.00 45.83 4.73
387 439 0.332632 CCCCCATCAAGTGATGTGGT 59.667 55.000 17.99 0.00 45.05 4.16
412 464 6.817765 AACGACACAAAAGATATGGTCATT 57.182 33.333 0.00 0.00 0.00 2.57
417 469 7.581476 ACAAGTAAACGACACAAAAGATATGG 58.419 34.615 0.00 0.00 0.00 2.74
508 1708 1.539929 GCACTATTGAGCGCCTCATCT 60.540 52.381 2.29 1.19 40.39 2.90
509 1709 0.864455 GCACTATTGAGCGCCTCATC 59.136 55.000 2.29 0.00 40.39 2.92
510 1710 0.467384 AGCACTATTGAGCGCCTCAT 59.533 50.000 2.29 0.00 40.39 2.90
527 1730 2.508526 AGTTCTGGGATTGTGAACAGC 58.491 47.619 0.00 0.00 41.56 4.40
565 1768 1.346395 TCGCAACCAATGTGGAGTAGT 59.654 47.619 0.18 0.00 40.96 2.73
567 1770 2.746904 CAATCGCAACCAATGTGGAGTA 59.253 45.455 0.18 0.00 40.96 2.59
568 1771 1.541147 CAATCGCAACCAATGTGGAGT 59.459 47.619 0.18 0.00 40.96 3.85
570 1773 1.902938 TCAATCGCAACCAATGTGGA 58.097 45.000 0.18 0.00 40.96 4.02
571 1774 2.945447 ATCAATCGCAACCAATGTGG 57.055 45.000 0.00 0.00 45.02 4.17
572 1775 5.594724 AAAAATCAATCGCAACCAATGTG 57.405 34.783 0.00 0.00 41.04 3.21
599 1802 3.187227 CCGGAGTGAATCAAGTTTGTGAG 59.813 47.826 0.00 0.00 0.00 3.51
649 1852 1.203928 CAGTTGCTAAGCTCGATCGG 58.796 55.000 16.41 7.26 0.00 4.18
658 1861 5.531287 AGGGAAAACAGTTACAGTTGCTAAG 59.469 40.000 0.00 0.00 0.00 2.18
713 1916 9.458727 CCGAGAAGGATACCTACAGTATTATTA 57.541 37.037 0.00 0.00 41.94 0.98
716 1919 7.083062 TCCGAGAAGGATACCTACAGTATTA 57.917 40.000 0.00 0.00 45.98 0.98
752 1958 6.749578 GTCTAAGTCGGTTTAGGTTAGCTTAC 59.250 42.308 0.00 0.00 32.66 2.34
753 1959 6.434028 TGTCTAAGTCGGTTTAGGTTAGCTTA 59.566 38.462 0.00 0.00 32.66 3.09
820 2042 0.173708 CCTGTGTTCGGCTAGAGGTC 59.826 60.000 0.00 0.00 0.00 3.85
864 2086 6.092955 ACAACTGTGACGTATTCTTCCTAA 57.907 37.500 0.00 0.00 0.00 2.69
916 2165 3.130160 GCTCCTGCTTTGGGCGAG 61.130 66.667 0.00 0.00 45.43 5.03
933 2182 2.127496 CGTCGTTTGCTGCTGCTG 60.127 61.111 17.00 0.77 40.48 4.41
954 2203 4.899239 CGCAGATGAGACGGGGCC 62.899 72.222 0.00 0.00 0.00 5.80
956 2205 1.101635 TACTCGCAGATGAGACGGGG 61.102 60.000 0.00 0.00 39.35 5.73
957 2206 0.029567 GTACTCGCAGATGAGACGGG 59.970 60.000 0.00 0.00 39.35 5.28
958 2207 0.029567 GGTACTCGCAGATGAGACGG 59.970 60.000 0.00 0.00 39.35 4.79
960 2209 0.029567 CGGGTACTCGCAGATGAGAC 59.970 60.000 0.21 0.00 39.35 3.36
964 2213 0.039074 GGATCGGGTACTCGCAGATG 60.039 60.000 11.17 0.00 33.89 2.90
965 2214 1.179814 GGGATCGGGTACTCGCAGAT 61.180 60.000 11.17 0.00 33.89 2.90
966 2215 1.826921 GGGATCGGGTACTCGCAGA 60.827 63.158 11.17 0.00 0.00 4.26
967 2216 2.728817 GGGATCGGGTACTCGCAG 59.271 66.667 11.17 0.00 0.00 5.18
974 2231 1.228215 TACGCATCGGGATCGGGTA 60.228 57.895 0.00 0.00 36.95 3.69
987 2244 0.739462 CAGACATTTCGGCCTACGCA 60.739 55.000 0.00 0.00 43.86 5.24
989 2246 0.739462 TGCAGACATTTCGGCCTACG 60.739 55.000 0.00 0.00 41.86 3.51
997 2254 2.547211 CGATGGAGGATGCAGACATTTC 59.453 50.000 0.00 0.00 42.42 2.17
1001 2258 0.461548 GACGATGGAGGATGCAGACA 59.538 55.000 0.00 0.00 42.42 3.41
1002 2259 0.596083 CGACGATGGAGGATGCAGAC 60.596 60.000 0.00 0.00 42.42 3.51
1045 2315 0.534427 TAGTCGCGGATCGTGAGGAT 60.534 55.000 6.13 0.00 46.84 3.24
1047 2317 1.009900 GTAGTCGCGGATCGTGAGG 60.010 63.158 6.13 0.00 46.84 3.86
1104 2374 2.158755 ACCAACTGTGAAGGGAACAGAG 60.159 50.000 10.35 0.00 46.55 3.35
1168 2438 2.027169 GTAATCCGCGACCTCCGG 59.973 66.667 8.23 0.00 46.88 5.14
1190 2460 1.473610 CGTCTAGCTCGAGGGAGAAGA 60.474 57.143 15.58 0.00 43.27 2.87
1209 2479 3.207669 GCAGCAGGGGCATCTTCG 61.208 66.667 0.00 0.00 44.61 3.79
1225 2495 2.757980 TTTACCTGGGCCTTCACCGC 62.758 60.000 4.53 0.00 0.00 5.68
1242 2512 0.855995 CGCCGGCGAAACAAAATTTT 59.144 45.000 44.86 0.00 42.83 1.82
1394 3033 2.430921 GCTGACACGTGACCTCGG 60.431 66.667 25.01 15.51 34.94 4.63
1623 3263 3.620488 ACGCATTACACCAATCATTCCT 58.380 40.909 0.00 0.00 0.00 3.36
1624 3264 4.104776 CAACGCATTACACCAATCATTCC 58.895 43.478 0.00 0.00 0.00 3.01
1625 3265 4.104776 CCAACGCATTACACCAATCATTC 58.895 43.478 0.00 0.00 0.00 2.67
1626 3266 3.761218 TCCAACGCATTACACCAATCATT 59.239 39.130 0.00 0.00 0.00 2.57
1627 3267 3.351740 TCCAACGCATTACACCAATCAT 58.648 40.909 0.00 0.00 0.00 2.45
1628 3268 2.784347 TCCAACGCATTACACCAATCA 58.216 42.857 0.00 0.00 0.00 2.57
1629 3269 5.493133 TTATCCAACGCATTACACCAATC 57.507 39.130 0.00 0.00 0.00 2.67
1630 3270 7.759489 ATATTATCCAACGCATTACACCAAT 57.241 32.000 0.00 0.00 0.00 3.16
1631 3271 7.575414 AATATTATCCAACGCATTACACCAA 57.425 32.000 0.00 0.00 0.00 3.67
1632 3272 7.934665 AGTAATATTATCCAACGCATTACACCA 59.065 33.333 0.00 0.00 33.39 4.17
1633 3273 8.227791 CAGTAATATTATCCAACGCATTACACC 58.772 37.037 0.00 0.00 33.39 4.16
1634 3274 8.984764 TCAGTAATATTATCCAACGCATTACAC 58.015 33.333 0.00 0.00 33.39 2.90
1635 3275 9.203421 CTCAGTAATATTATCCAACGCATTACA 57.797 33.333 0.00 0.00 33.39 2.41
1636 3276 8.169268 GCTCAGTAATATTATCCAACGCATTAC 58.831 37.037 0.00 0.00 31.88 1.89
1637 3277 7.333423 GGCTCAGTAATATTATCCAACGCATTA 59.667 37.037 0.00 0.00 0.00 1.90
1638 3278 6.149474 GGCTCAGTAATATTATCCAACGCATT 59.851 38.462 0.00 0.00 0.00 3.56
1639 3279 5.643777 GGCTCAGTAATATTATCCAACGCAT 59.356 40.000 0.00 0.00 0.00 4.73
1640 3280 4.994852 GGCTCAGTAATATTATCCAACGCA 59.005 41.667 0.00 0.00 0.00 5.24
1641 3281 5.120830 CAGGCTCAGTAATATTATCCAACGC 59.879 44.000 0.00 0.00 0.00 4.84
1642 3282 5.639506 CCAGGCTCAGTAATATTATCCAACG 59.360 44.000 0.00 0.00 0.00 4.10
1643 3283 6.769512 TCCAGGCTCAGTAATATTATCCAAC 58.230 40.000 0.00 0.00 0.00 3.77
1644 3284 6.013379 CCTCCAGGCTCAGTAATATTATCCAA 60.013 42.308 0.00 0.00 0.00 3.53
1645 3285 5.485353 CCTCCAGGCTCAGTAATATTATCCA 59.515 44.000 0.00 0.00 0.00 3.41
1646 3286 5.721960 TCCTCCAGGCTCAGTAATATTATCC 59.278 44.000 0.00 0.00 34.44 2.59
1647 3287 6.859112 TCCTCCAGGCTCAGTAATATTATC 57.141 41.667 0.00 0.00 34.44 1.75
1648 3288 6.962311 TCATCCTCCAGGCTCAGTAATATTAT 59.038 38.462 0.00 0.00 34.44 1.28
1649 3289 6.322931 TCATCCTCCAGGCTCAGTAATATTA 58.677 40.000 0.00 0.00 34.44 0.98
1650 3290 5.158141 TCATCCTCCAGGCTCAGTAATATT 58.842 41.667 0.00 0.00 34.44 1.28
1651 3291 4.756564 TCATCCTCCAGGCTCAGTAATAT 58.243 43.478 0.00 0.00 34.44 1.28
1652 3292 4.155709 CTCATCCTCCAGGCTCAGTAATA 58.844 47.826 0.00 0.00 34.44 0.98
1653 3293 2.971330 CTCATCCTCCAGGCTCAGTAAT 59.029 50.000 0.00 0.00 34.44 1.89
1654 3294 2.292521 ACTCATCCTCCAGGCTCAGTAA 60.293 50.000 0.00 0.00 34.44 2.24
1655 3295 1.289231 ACTCATCCTCCAGGCTCAGTA 59.711 52.381 0.00 0.00 34.44 2.74
1656 3296 0.042431 ACTCATCCTCCAGGCTCAGT 59.958 55.000 0.00 0.00 34.44 3.41
1657 3297 2.079170 TACTCATCCTCCAGGCTCAG 57.921 55.000 0.00 0.00 34.44 3.35
1658 3298 2.783379 ATACTCATCCTCCAGGCTCA 57.217 50.000 0.00 0.00 34.44 4.26
1659 3299 6.609212 TCAATATATACTCATCCTCCAGGCTC 59.391 42.308 0.00 0.00 34.44 4.70
1660 3300 6.382570 GTCAATATATACTCATCCTCCAGGCT 59.617 42.308 0.00 0.00 34.44 4.58
1661 3301 6.155221 TGTCAATATATACTCATCCTCCAGGC 59.845 42.308 0.00 0.00 34.44 4.85
1662 3302 7.398618 AGTGTCAATATATACTCATCCTCCAGG 59.601 40.741 0.00 0.00 0.00 4.45
1663 3303 8.359875 AGTGTCAATATATACTCATCCTCCAG 57.640 38.462 0.00 0.00 0.00 3.86
1664 3304 9.467796 CTAGTGTCAATATATACTCATCCTCCA 57.532 37.037 0.00 0.00 0.00 3.86
1665 3305 9.469097 ACTAGTGTCAATATATACTCATCCTCC 57.531 37.037 0.00 0.00 0.00 4.30
1679 3319 9.204337 TGCCCTATTTTACTACTAGTGTCAATA 57.796 33.333 5.39 7.44 0.00 1.90
1680 3320 8.086143 TGCCCTATTTTACTACTAGTGTCAAT 57.914 34.615 5.39 6.78 0.00 2.57
1681 3321 7.484993 TGCCCTATTTTACTACTAGTGTCAA 57.515 36.000 5.39 0.00 0.00 3.18
1682 3322 7.670605 ATGCCCTATTTTACTACTAGTGTCA 57.329 36.000 5.39 0.00 0.00 3.58
1683 3323 7.441458 CCAATGCCCTATTTTACTACTAGTGTC 59.559 40.741 5.39 0.00 0.00 3.67
1684 3324 7.092578 ACCAATGCCCTATTTTACTACTAGTGT 60.093 37.037 5.39 4.48 0.00 3.55
1685 3325 7.280356 ACCAATGCCCTATTTTACTACTAGTG 58.720 38.462 5.39 0.00 0.00 2.74
1686 3326 7.419865 GGACCAATGCCCTATTTTACTACTAGT 60.420 40.741 0.00 0.00 0.00 2.57
1687 3327 6.935208 GGACCAATGCCCTATTTTACTACTAG 59.065 42.308 0.00 0.00 0.00 2.57
1688 3328 6.618196 AGGACCAATGCCCTATTTTACTACTA 59.382 38.462 0.00 0.00 0.00 1.82
1689 3329 5.432060 AGGACCAATGCCCTATTTTACTACT 59.568 40.000 0.00 0.00 0.00 2.57
1690 3330 5.531287 CAGGACCAATGCCCTATTTTACTAC 59.469 44.000 0.00 0.00 0.00 2.73
1691 3331 5.398581 CCAGGACCAATGCCCTATTTTACTA 60.399 44.000 0.00 0.00 0.00 1.82
1692 3332 4.536765 CAGGACCAATGCCCTATTTTACT 58.463 43.478 0.00 0.00 0.00 2.24
1693 3333 3.636764 CCAGGACCAATGCCCTATTTTAC 59.363 47.826 0.00 0.00 0.00 2.01
1694 3334 3.909732 CCAGGACCAATGCCCTATTTTA 58.090 45.455 0.00 0.00 0.00 1.52
1695 3335 2.750814 CCAGGACCAATGCCCTATTTT 58.249 47.619 0.00 0.00 0.00 1.82
1696 3336 1.689258 GCCAGGACCAATGCCCTATTT 60.689 52.381 0.00 0.00 0.00 1.40
1697 3337 0.106015 GCCAGGACCAATGCCCTATT 60.106 55.000 0.00 0.00 0.00 1.73
1698 3338 0.995675 AGCCAGGACCAATGCCCTAT 60.996 55.000 0.00 0.00 0.00 2.57
1699 3339 1.619363 AGCCAGGACCAATGCCCTA 60.619 57.895 0.00 0.00 0.00 3.53
1700 3340 2.943265 AGCCAGGACCAATGCCCT 60.943 61.111 0.00 0.00 0.00 5.19
1701 3341 2.440980 GAGCCAGGACCAATGCCC 60.441 66.667 0.00 0.00 0.00 5.36
1702 3342 2.440980 GGAGCCAGGACCAATGCC 60.441 66.667 0.00 0.00 0.00 4.40
1703 3343 2.440980 GGGAGCCAGGACCAATGC 60.441 66.667 0.00 0.00 0.00 3.56
1704 3344 0.682209 CTTGGGAGCCAGGACCAATG 60.682 60.000 10.21 3.42 42.82 2.82
1705 3345 1.693640 CTTGGGAGCCAGGACCAAT 59.306 57.895 10.21 0.00 42.82 3.16
1706 3346 2.538141 CCTTGGGAGCCAGGACCAA 61.538 63.158 9.58 9.58 41.66 3.67
1707 3347 2.935481 CCTTGGGAGCCAGGACCA 60.935 66.667 0.00 0.00 31.89 4.02
1708 3348 4.432741 GCCTTGGGAGCCAGGACC 62.433 72.222 0.00 0.00 31.89 4.46
1715 3355 2.432174 AAAGTGGAGGCCTTGGGAGC 62.432 60.000 6.77 0.00 0.00 4.70
1716 3356 0.113190 AAAAGTGGAGGCCTTGGGAG 59.887 55.000 6.77 0.00 0.00 4.30
1717 3357 1.354368 CTAAAAGTGGAGGCCTTGGGA 59.646 52.381 6.77 0.00 0.00 4.37
1718 3358 1.075536 ACTAAAAGTGGAGGCCTTGGG 59.924 52.381 6.77 0.00 0.00 4.12
1719 3359 2.437413 GACTAAAAGTGGAGGCCTTGG 58.563 52.381 6.77 0.00 0.00 3.61
1720 3360 2.437413 GGACTAAAAGTGGAGGCCTTG 58.563 52.381 6.77 0.00 37.93 3.61
1727 3367 1.770061 ACAACCGGGACTAAAAGTGGA 59.230 47.619 6.32 0.00 0.00 4.02
1791 3432 2.950990 AGATTCTCCTACCTGGGTGT 57.049 50.000 2.07 0.00 36.20 4.16
1793 3434 4.961585 ACTAAAGATTCTCCTACCTGGGT 58.038 43.478 0.00 0.00 36.20 4.51
1806 3447 4.041938 TGTTACCAACCGGGACTAAAGATT 59.958 41.667 6.32 0.00 41.15 2.40
1808 3449 2.971330 TGTTACCAACCGGGACTAAAGA 59.029 45.455 6.32 0.00 41.15 2.52
1846 3488 0.600255 GGTGCTGACGTGTTGCTACT 60.600 55.000 0.00 0.00 0.00 2.57
1848 3490 0.599991 CAGGTGCTGACGTGTTGCTA 60.600 55.000 0.00 0.00 33.99 3.49
1852 3494 2.591715 GGCAGGTGCTGACGTGTT 60.592 61.111 0.00 0.00 39.67 3.32
1895 3547 1.148236 CCCTCCAAAACCCTAAACCCA 59.852 52.381 0.00 0.00 0.00 4.51
1922 3575 5.880054 AGGGAGAAACACAATATGAAACG 57.120 39.130 0.00 0.00 0.00 3.60
1940 3593 9.541143 GAATGATAAACACAAAAAGAAAAGGGA 57.459 29.630 0.00 0.00 0.00 4.20
2177 3852 3.890147 AGGGATCGTAGGAGATGTTACAC 59.110 47.826 0.00 0.00 0.00 2.90
2385 4103 8.612619 GCAACATTTCGAAATCGGGATATATAT 58.387 33.333 20.31 0.00 40.29 0.86
2386 4104 7.604545 TGCAACATTTCGAAATCGGGATATATA 59.395 33.333 20.31 0.00 40.29 0.86
2387 4105 6.429692 TGCAACATTTCGAAATCGGGATATAT 59.570 34.615 20.31 0.00 40.29 0.86
2388 4106 5.760743 TGCAACATTTCGAAATCGGGATATA 59.239 36.000 20.31 0.76 40.29 0.86
2389 4107 4.578516 TGCAACATTTCGAAATCGGGATAT 59.421 37.500 20.31 0.00 40.29 1.63
2390 4108 3.942115 TGCAACATTTCGAAATCGGGATA 59.058 39.130 20.31 3.66 40.29 2.59
2391 4109 2.752354 TGCAACATTTCGAAATCGGGAT 59.248 40.909 20.31 2.27 40.29 3.85
2392 4110 2.155279 TGCAACATTTCGAAATCGGGA 58.845 42.857 20.31 11.01 40.29 5.14
2393 4111 2.627863 TGCAACATTTCGAAATCGGG 57.372 45.000 20.31 12.12 40.29 5.14
2394 4112 3.181541 GCTTTGCAACATTTCGAAATCGG 60.182 43.478 20.31 12.81 40.29 4.18
2395 4113 3.181541 GGCTTTGCAACATTTCGAAATCG 60.182 43.478 20.31 16.94 41.45 3.34
2396 4114 3.989817 AGGCTTTGCAACATTTCGAAATC 59.010 39.130 20.31 10.02 0.00 2.17
2397 4115 3.742369 CAGGCTTTGCAACATTTCGAAAT 59.258 39.130 17.60 17.60 0.00 2.17
2398 4116 3.122297 CAGGCTTTGCAACATTTCGAAA 58.878 40.909 13.91 13.91 0.00 3.46
2399 4117 2.545532 CCAGGCTTTGCAACATTTCGAA 60.546 45.455 0.00 0.00 0.00 3.71
2400 4118 1.000385 CCAGGCTTTGCAACATTTCGA 60.000 47.619 0.00 0.00 0.00 3.71
2401 4119 1.421382 CCAGGCTTTGCAACATTTCG 58.579 50.000 0.00 0.00 0.00 3.46
2402 4120 1.608801 CCCCAGGCTTTGCAACATTTC 60.609 52.381 0.00 0.00 0.00 2.17
2403 4121 0.397564 CCCCAGGCTTTGCAACATTT 59.602 50.000 0.00 0.00 0.00 2.32
2404 4122 0.763986 ACCCCAGGCTTTGCAACATT 60.764 50.000 0.00 0.00 0.00 2.71
2405 4123 0.114168 TACCCCAGGCTTTGCAACAT 59.886 50.000 0.00 0.00 0.00 2.71
2406 4124 0.539438 CTACCCCAGGCTTTGCAACA 60.539 55.000 0.00 0.00 0.00 3.33
2407 4125 0.251165 TCTACCCCAGGCTTTGCAAC 60.251 55.000 0.00 0.00 0.00 4.17
2408 4126 0.480690 TTCTACCCCAGGCTTTGCAA 59.519 50.000 0.00 0.00 0.00 4.08
2409 4127 0.480690 TTTCTACCCCAGGCTTTGCA 59.519 50.000 0.00 0.00 0.00 4.08
2410 4128 1.627864 TTTTCTACCCCAGGCTTTGC 58.372 50.000 0.00 0.00 0.00 3.68
2428 4146 7.616313 TGTAACCACAACATTTCTTCCTTTTT 58.384 30.769 0.00 0.00 0.00 1.94
2429 4147 7.176589 TGTAACCACAACATTTCTTCCTTTT 57.823 32.000 0.00 0.00 0.00 2.27
2430 4148 6.183360 CCTGTAACCACAACATTTCTTCCTTT 60.183 38.462 0.00 0.00 33.22 3.11
2431 4149 5.301805 CCTGTAACCACAACATTTCTTCCTT 59.698 40.000 0.00 0.00 33.22 3.36
2432 4150 4.827284 CCTGTAACCACAACATTTCTTCCT 59.173 41.667 0.00 0.00 33.22 3.36
2433 4151 4.825085 TCCTGTAACCACAACATTTCTTCC 59.175 41.667 0.00 0.00 33.22 3.46
2434 4152 6.381801 CATCCTGTAACCACAACATTTCTTC 58.618 40.000 0.00 0.00 33.22 2.87
2435 4153 5.278957 GCATCCTGTAACCACAACATTTCTT 60.279 40.000 0.00 0.00 33.22 2.52
2436 4154 4.218417 GCATCCTGTAACCACAACATTTCT 59.782 41.667 0.00 0.00 33.22 2.52
2437 4155 4.022416 TGCATCCTGTAACCACAACATTTC 60.022 41.667 0.00 0.00 33.22 2.17
2438 4156 3.894427 TGCATCCTGTAACCACAACATTT 59.106 39.130 0.00 0.00 33.22 2.32
2439 4157 3.495331 TGCATCCTGTAACCACAACATT 58.505 40.909 0.00 0.00 33.22 2.71
2440 4158 3.153369 TGCATCCTGTAACCACAACAT 57.847 42.857 0.00 0.00 33.22 2.71
2441 4159 2.647683 TGCATCCTGTAACCACAACA 57.352 45.000 0.00 0.00 33.22 3.33
2442 4160 4.519540 AATTGCATCCTGTAACCACAAC 57.480 40.909 0.00 0.00 33.22 3.32
2443 4161 4.021544 GGAAATTGCATCCTGTAACCACAA 60.022 41.667 0.00 0.00 33.22 3.33
2444 4162 3.509575 GGAAATTGCATCCTGTAACCACA 59.490 43.478 0.00 0.00 33.98 4.17
2445 4163 3.763897 AGGAAATTGCATCCTGTAACCAC 59.236 43.478 6.55 0.00 45.60 4.16
2446 4164 4.046286 AGGAAATTGCATCCTGTAACCA 57.954 40.909 6.55 0.00 45.60 3.67
2454 4172 7.278646 GGTTTATTCAAAGAGGAAATTGCATCC 59.721 37.037 0.00 0.00 37.22 3.51
2455 4173 8.037166 AGGTTTATTCAAAGAGGAAATTGCATC 58.963 33.333 0.00 0.00 0.00 3.91
2456 4174 7.910584 AGGTTTATTCAAAGAGGAAATTGCAT 58.089 30.769 0.00 0.00 0.00 3.96
2457 4175 7.301868 AGGTTTATTCAAAGAGGAAATTGCA 57.698 32.000 0.00 0.00 0.00 4.08
2458 4176 6.528072 CGAGGTTTATTCAAAGAGGAAATTGC 59.472 38.462 0.00 0.00 0.00 3.56
2459 4177 7.593825 ACGAGGTTTATTCAAAGAGGAAATTG 58.406 34.615 0.00 0.00 0.00 2.32
2460 4178 7.761038 ACGAGGTTTATTCAAAGAGGAAATT 57.239 32.000 0.00 0.00 0.00 1.82
2461 4179 8.857694 TTACGAGGTTTATTCAAAGAGGAAAT 57.142 30.769 0.00 0.00 0.00 2.17
2462 4180 8.857694 ATTACGAGGTTTATTCAAAGAGGAAA 57.142 30.769 0.00 0.00 0.00 3.13
2463 4181 7.277098 CGATTACGAGGTTTATTCAAAGAGGAA 59.723 37.037 0.00 0.00 42.66 3.36
2464 4182 6.755141 CGATTACGAGGTTTATTCAAAGAGGA 59.245 38.462 0.00 0.00 42.66 3.71
2465 4183 6.534079 ACGATTACGAGGTTTATTCAAAGAGG 59.466 38.462 0.00 0.00 42.66 3.69
2466 4184 7.521509 ACGATTACGAGGTTTATTCAAAGAG 57.478 36.000 0.00 0.00 42.66 2.85
2467 4185 8.984891 TTACGATTACGAGGTTTATTCAAAGA 57.015 30.769 0.00 0.00 42.66 2.52
2494 4212 3.072330 CCCAGCACTAAAAACCCCATTTT 59.928 43.478 0.00 0.00 42.55 1.82
2495 4213 2.637382 CCCAGCACTAAAAACCCCATTT 59.363 45.455 0.00 0.00 0.00 2.32
2496 4214 2.256306 CCCAGCACTAAAAACCCCATT 58.744 47.619 0.00 0.00 0.00 3.16
2497 4215 1.937191 CCCAGCACTAAAAACCCCAT 58.063 50.000 0.00 0.00 0.00 4.00
2498 4216 0.830023 GCCCAGCACTAAAAACCCCA 60.830 55.000 0.00 0.00 0.00 4.96
2499 4217 1.541310 GGCCCAGCACTAAAAACCCC 61.541 60.000 0.00 0.00 0.00 4.95
2500 4218 0.541998 AGGCCCAGCACTAAAAACCC 60.542 55.000 0.00 0.00 0.00 4.11
2501 4219 2.092323 CTAGGCCCAGCACTAAAAACC 58.908 52.381 0.00 0.00 0.00 3.27
2502 4220 1.472878 GCTAGGCCCAGCACTAAAAAC 59.527 52.381 19.09 0.00 41.40 2.43
2503 4221 1.074727 TGCTAGGCCCAGCACTAAAAA 59.925 47.619 22.80 0.00 46.41 1.94
2504 4222 0.695924 TGCTAGGCCCAGCACTAAAA 59.304 50.000 22.80 0.00 46.41 1.52
2505 4223 2.382526 TGCTAGGCCCAGCACTAAA 58.617 52.632 22.80 0.00 46.41 1.85
2506 4224 4.145436 TGCTAGGCCCAGCACTAA 57.855 55.556 22.80 0.00 46.41 2.24
2511 4229 1.661498 GCTCTTTTGCTAGGCCCAGC 61.661 60.000 17.13 17.13 42.15 4.85
2512 4230 0.034670 AGCTCTTTTGCTAGGCCCAG 60.035 55.000 0.00 0.00 42.10 4.45
2513 4231 0.405585 AAGCTCTTTTGCTAGGCCCA 59.594 50.000 0.00 0.00 43.24 5.36
2514 4232 1.098869 GAAGCTCTTTTGCTAGGCCC 58.901 55.000 0.00 0.00 43.24 5.80
2515 4233 1.742268 CTGAAGCTCTTTTGCTAGGCC 59.258 52.381 0.00 0.00 43.24 5.19
2516 4234 1.742268 CCTGAAGCTCTTTTGCTAGGC 59.258 52.381 0.00 0.00 43.24 3.93
2517 4235 3.006247 GTCCTGAAGCTCTTTTGCTAGG 58.994 50.000 0.00 0.00 43.24 3.02
2518 4236 3.668447 TGTCCTGAAGCTCTTTTGCTAG 58.332 45.455 0.00 0.00 43.24 3.42
2519 4237 3.769739 TGTCCTGAAGCTCTTTTGCTA 57.230 42.857 0.00 0.00 43.24 3.49
2520 4238 2.645838 TGTCCTGAAGCTCTTTTGCT 57.354 45.000 0.00 0.00 46.40 3.91
2521 4239 3.930634 AATGTCCTGAAGCTCTTTTGC 57.069 42.857 0.00 0.00 0.00 3.68
2522 4240 5.803967 GCAATAATGTCCTGAAGCTCTTTTG 59.196 40.000 0.00 0.00 0.00 2.44
2523 4241 5.477984 TGCAATAATGTCCTGAAGCTCTTTT 59.522 36.000 0.00 0.00 0.00 2.27
2524 4242 5.012239 TGCAATAATGTCCTGAAGCTCTTT 58.988 37.500 0.00 0.00 0.00 2.52
2525 4243 4.592942 TGCAATAATGTCCTGAAGCTCTT 58.407 39.130 0.00 0.00 0.00 2.85
2526 4244 4.226427 TGCAATAATGTCCTGAAGCTCT 57.774 40.909 0.00 0.00 0.00 4.09
2527 4245 4.970662 TTGCAATAATGTCCTGAAGCTC 57.029 40.909 0.00 0.00 0.00 4.09
2528 4246 5.655532 AGAATTGCAATAATGTCCTGAAGCT 59.344 36.000 13.39 0.00 0.00 3.74
2529 4247 5.899299 AGAATTGCAATAATGTCCTGAAGC 58.101 37.500 13.39 0.00 0.00 3.86
2530 4248 9.294030 GTTAAGAATTGCAATAATGTCCTGAAG 57.706 33.333 13.39 0.00 0.00 3.02
2531 4249 8.801299 TGTTAAGAATTGCAATAATGTCCTGAA 58.199 29.630 13.39 0.83 0.00 3.02
2532 4250 8.243426 GTGTTAAGAATTGCAATAATGTCCTGA 58.757 33.333 13.39 0.00 0.00 3.86
2533 4251 8.028354 TGTGTTAAGAATTGCAATAATGTCCTG 58.972 33.333 13.39 0.00 0.00 3.86
2534 4252 8.121305 TGTGTTAAGAATTGCAATAATGTCCT 57.879 30.769 13.39 0.00 0.00 3.85
2535 4253 8.755696 TTGTGTTAAGAATTGCAATAATGTCC 57.244 30.769 13.39 0.96 0.00 4.02
2541 4259 9.368674 CCATCAATTGTGTTAAGAATTGCAATA 57.631 29.630 13.39 0.00 43.40 1.90
2542 4260 7.879160 ACCATCAATTGTGTTAAGAATTGCAAT 59.121 29.630 5.99 5.99 43.40 3.56
2543 4261 7.215789 ACCATCAATTGTGTTAAGAATTGCAA 58.784 30.769 0.00 0.00 43.40 4.08
2544 4262 6.757237 ACCATCAATTGTGTTAAGAATTGCA 58.243 32.000 5.13 0.00 43.40 4.08
2545 4263 8.755696 TTACCATCAATTGTGTTAAGAATTGC 57.244 30.769 5.13 0.00 43.40 3.56


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.