Multiple sequence alignment - TraesCS6B01G063900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G063900 chr6B 100.000 3168 0 0 1 3168 42392045 42395212 0.000000e+00 5851.0
1 TraesCS6B01G063900 chr6B 80.624 1796 269 59 429 2176 42006312 42004548 0.000000e+00 1315.0
2 TraesCS6B01G063900 chr6B 81.523 1510 200 43 733 2193 42212263 42210784 0.000000e+00 1170.0
3 TraesCS6B01G063900 chr6B 83.843 916 118 19 1274 2169 42318492 42317587 0.000000e+00 845.0
4 TraesCS6B01G063900 chr6B 83.777 789 82 17 777 1537 42231872 42231102 0.000000e+00 706.0
5 TraesCS6B01G063900 chr6B 85.219 433 51 13 1 426 130326839 130327265 1.750000e-117 433.0
6 TraesCS6B01G063900 chr6B 95.480 177 7 1 2281 2457 624228867 624228692 6.690000e-72 281.0
7 TraesCS6B01G063900 chr6B 93.548 186 11 1 2281 2465 657617424 657617609 3.110000e-70 276.0
8 TraesCS6B01G063900 chr6B 100.000 29 0 0 2460 2488 42227566 42227538 2.000000e-03 54.7
9 TraesCS6B01G063900 chr6A 85.603 1278 142 23 1 1269 24047645 24048889 0.000000e+00 1303.0
10 TraesCS6B01G063900 chr6A 83.837 1423 170 33 776 2168 24031651 24030259 0.000000e+00 1299.0
11 TraesCS6B01G063900 chr6A 82.055 1460 202 36 777 2194 23952611 23951170 0.000000e+00 1190.0
12 TraesCS6B01G063900 chr6A 85.913 1008 107 21 1298 2280 24048958 24049955 0.000000e+00 1042.0
13 TraesCS6B01G063900 chr6A 83.008 871 116 17 1330 2176 23896382 23895520 0.000000e+00 760.0
14 TraesCS6B01G063900 chr6A 85.463 454 54 7 2499 2944 24050000 24050449 2.230000e-126 462.0
15 TraesCS6B01G063900 chr6A 86.752 234 20 9 2934 3165 24050468 24050692 1.890000e-62 250.0
16 TraesCS6B01G063900 chr6A 100.000 29 0 0 2460 2488 23951057 23951029 2.000000e-03 54.7
17 TraesCS6B01G063900 chr6A 100.000 28 0 0 2461 2488 23961955 23961928 6.000000e-03 52.8
18 TraesCS6B01G063900 chr6D 83.705 1436 167 37 760 2169 25880338 25878944 0.000000e+00 1293.0
19 TraesCS6B01G063900 chr6D 82.555 1456 193 36 777 2193 25827834 25826401 0.000000e+00 1225.0
20 TraesCS6B01G063900 chr6D 82.463 1340 186 26 890 2200 25852750 25851431 0.000000e+00 1127.0
21 TraesCS6B01G063900 chr6D 87.046 826 95 10 448 1269 25914425 25915242 0.000000e+00 922.0
22 TraesCS6B01G063900 chr6D 89.265 680 59 7 1605 2280 25915648 25916317 0.000000e+00 839.0
23 TraesCS6B01G063900 chr6D 84.321 861 113 14 1330 2176 25804730 25803878 0.000000e+00 822.0
24 TraesCS6B01G063900 chr6D 86.849 730 47 16 2459 3165 25916308 25917011 0.000000e+00 771.0
25 TraesCS6B01G063900 chr6D 79.575 847 124 34 429 1250 25805661 25804839 7.670000e-156 560.0
26 TraesCS6B01G063900 chr6D 88.703 239 23 3 1298 1536 25915304 25915538 4.000000e-74 289.0
27 TraesCS6B01G063900 chr6D 100.000 29 0 0 2460 2488 25826109 25826081 2.000000e-03 54.7
28 TraesCS6B01G063900 chr7A 80.354 1186 173 42 1022 2169 670947227 670946064 0.000000e+00 845.0
29 TraesCS6B01G063900 chr5B 82.968 411 55 10 1 403 134026270 134025867 1.080000e-94 357.0
30 TraesCS6B01G063900 chr4B 82.512 406 61 10 1 402 588909083 588908684 6.500000e-92 348.0
31 TraesCS6B01G063900 chr4B 82.995 394 52 14 11 398 414269829 414270213 3.030000e-90 342.0
32 TraesCS6B01G063900 chr4B 95.238 189 4 4 2281 2465 666660338 666660151 8.590000e-76 294.0
33 TraesCS6B01G063900 chr4B 94.149 188 6 4 2281 2465 666696962 666696777 6.690000e-72 281.0
34 TraesCS6B01G063900 chr2B 81.971 416 60 14 1 413 134402524 134402927 3.910000e-89 339.0
35 TraesCS6B01G063900 chr2B 95.028 181 7 2 2281 2460 405271695 405271874 1.860000e-72 283.0
36 TraesCS6B01G063900 chr4A 82.108 408 60 9 12 417 568877613 568878009 1.410000e-88 337.0
37 TraesCS6B01G063900 chr5D 80.734 436 76 7 1 434 522762696 522762267 1.820000e-87 333.0
38 TraesCS6B01G063900 chr7D 81.324 423 66 11 1 418 25047958 25047544 6.550000e-87 331.0
39 TraesCS6B01G063900 chr7B 95.506 178 8 0 2283 2460 683466054 683465877 5.170000e-73 285.0
40 TraesCS6B01G063900 chr3B 94.054 185 10 1 2283 2466 168684012 168683828 2.410000e-71 279.0
41 TraesCS6B01G063900 chr3B 94.972 179 8 1 2283 2460 820459636 820459458 2.410000e-71 279.0
42 TraesCS6B01G063900 chr3B 94.475 181 9 1 2281 2460 236494906 236494726 8.650000e-71 278.0
43 TraesCS6B01G063900 chr3B 79.866 149 27 2 2709 2857 655328751 655328606 4.320000e-19 106.0
44 TraesCS6B01G063900 chr3B 77.181 149 29 3 2711 2857 571768105 571767960 7.280000e-12 82.4
45 TraesCS6B01G063900 chr3D 79.195 149 28 2 2709 2857 496173484 496173339 2.010000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G063900 chr6B 42392045 42395212 3167 False 5851.00 5851 100.00000 1 3168 1 chr6B.!!$F1 3167
1 TraesCS6B01G063900 chr6B 42004548 42006312 1764 True 1315.00 1315 80.62400 429 2176 1 chr6B.!!$R1 1747
2 TraesCS6B01G063900 chr6B 42210784 42212263 1479 True 1170.00 1170 81.52300 733 2193 1 chr6B.!!$R2 1460
3 TraesCS6B01G063900 chr6B 42317587 42318492 905 True 845.00 845 83.84300 1274 2169 1 chr6B.!!$R3 895
4 TraesCS6B01G063900 chr6B 42227538 42231872 4334 True 380.35 706 91.88850 777 2488 2 chr6B.!!$R5 1711
5 TraesCS6B01G063900 chr6A 24030259 24031651 1392 True 1299.00 1299 83.83700 776 2168 1 chr6A.!!$R3 1392
6 TraesCS6B01G063900 chr6A 24047645 24050692 3047 False 764.25 1303 85.93275 1 3165 4 chr6A.!!$F1 3164
7 TraesCS6B01G063900 chr6A 23895520 23896382 862 True 760.00 760 83.00800 1330 2176 1 chr6A.!!$R1 846
8 TraesCS6B01G063900 chr6A 23951029 23952611 1582 True 622.35 1190 91.02750 777 2488 2 chr6A.!!$R4 1711
9 TraesCS6B01G063900 chr6D 25878944 25880338 1394 True 1293.00 1293 83.70500 760 2169 1 chr6D.!!$R2 1409
10 TraesCS6B01G063900 chr6D 25851431 25852750 1319 True 1127.00 1127 82.46300 890 2200 1 chr6D.!!$R1 1310
11 TraesCS6B01G063900 chr6D 25914425 25917011 2586 False 705.25 922 87.96575 448 3165 4 chr6D.!!$F1 2717
12 TraesCS6B01G063900 chr6D 25803878 25805661 1783 True 691.00 822 81.94800 429 2176 2 chr6D.!!$R3 1747
13 TraesCS6B01G063900 chr6D 25826081 25827834 1753 True 639.85 1225 91.27750 777 2488 2 chr6D.!!$R4 1711
14 TraesCS6B01G063900 chr7A 670946064 670947227 1163 True 845.00 845 80.35400 1022 2169 1 chr7A.!!$R1 1147

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
75 77 0.439985 CATGTTTCTCGTGACCAGCG 59.560 55.0 0.0 0.0 35.23 5.18 F
1100 1164 0.098200 TCACCGTCGTTCTATGCGAG 59.902 55.0 0.0 0.0 39.14 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1545 1695 0.318955 GCACTGTGCCAAATGTCCAC 60.319 55.0 21.78 0.0 37.42 4.02 R
2410 2869 0.179258 CGCTTTTACACGCTCGTTCC 60.179 55.0 0.00 0.0 0.00 3.62 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
73 75 5.812127 TCATATTCATGTTTCTCGTGACCAG 59.188 40.000 0.00 0.00 41.16 4.00
75 77 0.439985 CATGTTTCTCGTGACCAGCG 59.560 55.000 0.00 0.00 35.23 5.18
159 161 7.428282 TCAATGTTGAAATTTAGTACGAGCA 57.572 32.000 0.00 0.00 33.55 4.26
161 163 7.801315 TCAATGTTGAAATTTAGTACGAGCAAC 59.199 33.333 0.00 0.00 33.55 4.17
162 164 6.854496 TGTTGAAATTTAGTACGAGCAACT 57.146 33.333 13.15 0.00 36.34 3.16
166 168 8.653338 GTTGAAATTTAGTACGAGCAACTGATA 58.347 33.333 0.00 0.00 33.55 2.15
195 197 9.751542 AAATCAATTATTTTGTGTTTACGACCA 57.248 25.926 0.00 0.00 33.91 4.02
197 199 8.563289 TCAATTATTTTGTGTTTACGACCAAC 57.437 30.769 0.00 0.00 0.00 3.77
198 200 8.188799 TCAATTATTTTGTGTTTACGACCAACA 58.811 29.630 0.00 0.00 0.00 3.33
200 202 5.821516 ATTTTGTGTTTACGACCAACAGA 57.178 34.783 0.00 0.00 34.79 3.41
245 247 9.396022 TCTCTCTAAAACTTGTTGAAACTTGAT 57.604 29.630 0.00 0.00 0.00 2.57
248 250 9.573133 CTCTAAAACTTGTTGAAACTTGATTGT 57.427 29.630 0.00 0.00 0.00 2.71
265 267 8.819974 ACTTGATTGTTTTAGATGCAAAAACTG 58.180 29.630 20.28 9.91 43.82 3.16
324 327 5.355350 AGATTTTCTTTCTATTGTGCCCTCG 59.645 40.000 0.00 0.00 0.00 4.63
327 330 1.398390 CTTTCTATTGTGCCCTCGTGC 59.602 52.381 0.00 0.00 0.00 5.34
343 346 2.231964 TCGTGCGGGATTAAACTACTGT 59.768 45.455 0.00 0.00 0.00 3.55
345 348 3.332034 GTGCGGGATTAAACTACTGTGT 58.668 45.455 0.00 0.00 0.00 3.72
347 350 2.676342 GCGGGATTAAACTACTGTGTGG 59.324 50.000 0.00 0.00 0.00 4.17
352 355 5.416947 GGATTAAACTACTGTGTGGATCGT 58.583 41.667 0.00 0.00 0.00 3.73
354 357 5.456548 TTAAACTACTGTGTGGATCGTGA 57.543 39.130 0.00 0.00 0.00 4.35
361 364 1.234821 GTGTGGATCGTGAGGCAAAA 58.765 50.000 0.00 0.00 0.00 2.44
367 370 3.067074 TCGTGAGGCAAAACGAACA 57.933 47.368 6.82 0.00 45.14 3.18
373 376 1.661509 GGCAAAACGAACAGGCAGC 60.662 57.895 0.00 0.00 0.00 5.25
377 380 0.751643 AAAACGAACAGGCAGCAGGT 60.752 50.000 0.00 0.00 0.00 4.00
394 397 1.072159 GTCTTGGCAGGTGAGTGCT 59.928 57.895 0.00 0.00 43.45 4.40
395 398 0.952984 GTCTTGGCAGGTGAGTGCTC 60.953 60.000 0.00 0.00 43.45 4.26
396 399 1.673665 CTTGGCAGGTGAGTGCTCC 60.674 63.158 0.00 0.00 43.45 4.70
427 430 2.534019 CGCCTGCGCATATCCGTTT 61.534 57.895 12.24 0.00 34.03 3.60
449 452 6.636454 TTCCTCCCACTATGAATACACTTT 57.364 37.500 0.00 0.00 0.00 2.66
462 465 6.521162 TGAATACACTTTGAACACTGCTCTA 58.479 36.000 0.00 0.00 0.00 2.43
472 475 4.997395 TGAACACTGCTCTAATGGTTCTTC 59.003 41.667 0.00 0.00 36.50 2.87
480 483 7.500559 ACTGCTCTAATGGTTCTTCAATTATCC 59.499 37.037 0.00 0.00 0.00 2.59
481 484 7.577303 TGCTCTAATGGTTCTTCAATTATCCT 58.423 34.615 0.00 0.00 0.00 3.24
511 516 3.926821 TTCCTTTATGTTCGTTTGCCC 57.073 42.857 0.00 0.00 0.00 5.36
569 578 1.115467 CACGGCCTACATCCTTCTCT 58.885 55.000 0.00 0.00 0.00 3.10
631 649 7.066766 GTGGGCTGAATATGATCTTTATCCATC 59.933 40.741 0.00 0.00 0.00 3.51
648 666 2.019249 CATCAAGATCGGCAACCACAT 58.981 47.619 0.00 0.00 0.00 3.21
649 667 1.452110 TCAAGATCGGCAACCACATG 58.548 50.000 0.00 0.00 0.00 3.21
760 781 5.769662 ACAGATCAGTTTTTGGCATCTACAA 59.230 36.000 0.00 0.00 0.00 2.41
808 841 2.289820 GAGAAAGAAACCACGTGGAACC 59.710 50.000 40.21 25.24 38.94 3.62
827 860 5.048713 GGAACCTGTCATACTTTTCCACAAG 60.049 44.000 0.00 0.00 33.96 3.16
888 931 3.181466 TGCAACTGACAGAAGAGTGCTAA 60.181 43.478 10.08 0.00 34.74 3.09
921 964 3.202001 CGTGCCCGCCATAGTTGG 61.202 66.667 0.00 0.00 46.66 3.77
972 1032 2.997980 TGAAGAACACACTGAGCCAAA 58.002 42.857 0.00 0.00 0.00 3.28
989 1049 6.074544 AGCCAAAGTACGTAGCTAGATAAG 57.925 41.667 4.60 0.00 30.46 1.73
994 1054 7.254017 CCAAAGTACGTAGCTAGATAAGTTTGC 60.254 40.741 11.76 3.99 0.00 3.68
1057 1121 1.519719 CTTGCCCTCTTCCTCCTCG 59.480 63.158 0.00 0.00 0.00 4.63
1083 1147 2.501128 GCGTATGGGCAGCTCTCA 59.499 61.111 0.00 0.00 0.00 3.27
1100 1164 0.098200 TCACCGTCGTTCTATGCGAG 59.902 55.000 0.00 0.00 39.14 5.03
1158 1222 1.153549 GATCAAGGCGCTCCTCGTT 60.154 57.895 7.64 0.00 43.40 3.85
1223 1287 6.844696 TGACTGCTTTGTTCAAGTAAGTAG 57.155 37.500 0.00 0.00 37.55 2.57
1224 1288 5.236478 TGACTGCTTTGTTCAAGTAAGTAGC 59.764 40.000 0.00 0.00 35.75 3.58
1305 1441 5.423015 TCACAGAGAAGGTCAGATTAATGC 58.577 41.667 0.00 0.00 0.00 3.56
1322 1458 9.912634 AGATTAATGCGGGAATTTTGTTATATG 57.087 29.630 0.00 0.00 0.00 1.78
1545 1695 7.388712 CGTTTCTGGTACGTACATAAAATCAG 58.611 38.462 26.02 20.05 34.47 2.90
1552 1703 6.759827 GGTACGTACATAAAATCAGTGGACAT 59.240 38.462 26.02 0.00 0.00 3.06
1554 1705 7.681939 ACGTACATAAAATCAGTGGACATTT 57.318 32.000 0.00 0.00 0.00 2.32
1561 1743 1.608055 TCAGTGGACATTTGGCACAG 58.392 50.000 0.00 0.00 42.39 3.66
1574 1760 2.307363 GCACAGTGCACGTACAAGT 58.693 52.632 21.22 1.87 44.26 3.16
1592 1805 7.219154 CGTACAAGTTTTTAATGCTGACAACAA 59.781 33.333 0.00 0.00 0.00 2.83
1594 1807 7.096551 ACAAGTTTTTAATGCTGACAACAAGT 58.903 30.769 0.00 0.00 0.00 3.16
1595 1808 7.063308 ACAAGTTTTTAATGCTGACAACAAGTG 59.937 33.333 0.00 0.00 0.00 3.16
1596 1809 6.630071 AGTTTTTAATGCTGACAACAAGTGT 58.370 32.000 0.00 0.00 45.74 3.55
1612 1855 2.114616 AGTGTCTTGGATCAGCTAGGG 58.885 52.381 0.00 0.00 0.00 3.53
1697 1940 4.787280 CCGACCTCCCAGCTCCCT 62.787 72.222 0.00 0.00 0.00 4.20
1698 1941 2.685380 CGACCTCCCAGCTCCCTT 60.685 66.667 0.00 0.00 0.00 3.95
1704 1947 1.210722 CCTCCCAGCTCCCTTCTTAAC 59.789 57.143 0.00 0.00 0.00 2.01
1744 1987 2.325761 GCGTTCGACAAGAAGAAGCTA 58.674 47.619 0.00 0.00 39.95 3.32
1746 1989 3.183775 GCGTTCGACAAGAAGAAGCTAAA 59.816 43.478 0.00 0.00 39.95 1.85
1753 1996 0.320697 AGAAGAAGCTAAACCCGCGT 59.679 50.000 4.92 0.00 0.00 6.01
1783 2026 4.444838 TTATCCGGCGCGCACACT 62.445 61.111 34.42 16.67 0.00 3.55
1795 2038 0.101399 CGCACACTATCGGCTTCTCT 59.899 55.000 0.00 0.00 0.00 3.10
1849 2092 3.632080 ACCAACATCGACCCGGCA 61.632 61.111 0.00 0.00 0.00 5.69
2020 2263 2.048222 CTCTTCAACGGCGGCTCA 60.048 61.111 13.24 0.00 0.00 4.26
2116 2359 2.040544 GGGGAACATCACACCGCTG 61.041 63.158 0.00 0.00 34.52 5.18
2200 2451 4.785055 CGTCTCGCCATATATACGTGTTAC 59.215 45.833 0.00 1.48 0.00 2.50
2205 2456 8.126700 TCTCGCCATATATACGTGTTACATATG 58.873 37.037 0.00 0.00 32.02 1.78
2217 2468 5.006844 CGTGTTACATATGGGCGTAAAATGA 59.993 40.000 7.80 0.00 29.82 2.57
2238 2489 3.811497 GAGTGCGTAAAGTTAGGTTGGTT 59.189 43.478 0.00 0.00 0.00 3.67
2240 2491 4.751600 AGTGCGTAAAGTTAGGTTGGTTAC 59.248 41.667 0.00 0.00 0.00 2.50
2241 2492 3.740321 TGCGTAAAGTTAGGTTGGTTACG 59.260 43.478 9.28 9.28 45.98 3.18
2242 2493 3.740832 GCGTAAAGTTAGGTTGGTTACGT 59.259 43.478 13.71 0.00 45.35 3.57
2270 2729 3.748083 AGTAATCACCTAGCATGCATGG 58.252 45.455 27.34 22.13 0.00 3.66
2271 2730 1.325355 AATCACCTAGCATGCATGGC 58.675 50.000 27.34 18.86 0.00 4.40
2272 2731 0.184211 ATCACCTAGCATGCATGGCA 59.816 50.000 27.34 11.43 44.86 4.92
2273 2732 0.464916 TCACCTAGCATGCATGGCAG 60.465 55.000 27.34 16.03 43.65 4.85
2274 2733 0.464916 CACCTAGCATGCATGGCAGA 60.465 55.000 27.34 11.02 43.65 4.26
2275 2734 0.256752 ACCTAGCATGCATGGCAGAA 59.743 50.000 27.34 9.05 43.65 3.02
2276 2735 1.133575 ACCTAGCATGCATGGCAGAAT 60.134 47.619 27.34 7.21 43.65 2.40
2277 2736 2.107031 ACCTAGCATGCATGGCAGAATA 59.893 45.455 27.34 7.89 43.65 1.75
2278 2737 3.151554 CCTAGCATGCATGGCAGAATAA 58.848 45.455 27.34 3.45 43.65 1.40
2279 2738 3.190744 CCTAGCATGCATGGCAGAATAAG 59.809 47.826 27.34 10.89 43.65 1.73
2280 2739 1.340248 AGCATGCATGGCAGAATAAGC 59.660 47.619 27.34 9.39 43.65 3.09
2281 2740 1.929038 GCATGCATGGCAGAATAAGCG 60.929 52.381 27.34 0.00 43.65 4.68
2282 2741 0.956633 ATGCATGGCAGAATAAGCGG 59.043 50.000 0.00 0.00 43.65 5.52
2283 2742 1.008079 GCATGGCAGAATAAGCGGC 60.008 57.895 0.00 0.00 0.00 6.53
2284 2743 1.727511 GCATGGCAGAATAAGCGGCA 61.728 55.000 1.45 0.00 39.74 5.69
2285 2744 0.740149 CATGGCAGAATAAGCGGCAA 59.260 50.000 1.45 0.00 38.82 4.52
2286 2745 1.338973 CATGGCAGAATAAGCGGCAAT 59.661 47.619 1.45 0.00 38.82 3.56
2287 2746 0.740149 TGGCAGAATAAGCGGCAATG 59.260 50.000 1.45 0.00 31.56 2.82
2288 2747 0.595825 GGCAGAATAAGCGGCAATGC 60.596 55.000 1.45 0.00 0.00 3.56
2290 2749 1.603802 GCAGAATAAGCGGCAATGCTA 59.396 47.619 4.82 0.00 46.60 3.49
2291 2750 2.603173 GCAGAATAAGCGGCAATGCTAC 60.603 50.000 4.82 0.00 46.60 3.58
2292 2751 2.613595 CAGAATAAGCGGCAATGCTACA 59.386 45.455 4.82 0.00 46.60 2.74
2293 2752 2.614057 AGAATAAGCGGCAATGCTACAC 59.386 45.455 4.82 0.00 46.60 2.90
2294 2753 0.937304 ATAAGCGGCAATGCTACACG 59.063 50.000 4.82 0.68 46.60 4.49
2295 2754 0.390603 TAAGCGGCAATGCTACACGT 60.391 50.000 4.82 0.00 46.60 4.49
2296 2755 0.390603 AAGCGGCAATGCTACACGTA 60.391 50.000 4.82 0.00 46.60 3.57
2297 2756 1.082117 AGCGGCAATGCTACACGTAC 61.082 55.000 4.82 0.00 45.14 3.67
2298 2757 1.355796 GCGGCAATGCTACACGTACA 61.356 55.000 4.82 0.00 0.00 2.90
2299 2758 1.072391 CGGCAATGCTACACGTACAA 58.928 50.000 4.82 0.00 0.00 2.41
2300 2759 1.461512 CGGCAATGCTACACGTACAAA 59.538 47.619 4.82 0.00 0.00 2.83
2301 2760 2.723618 CGGCAATGCTACACGTACAAAC 60.724 50.000 4.82 0.00 0.00 2.93
2302 2761 2.224549 GGCAATGCTACACGTACAAACA 59.775 45.455 4.82 0.00 0.00 2.83
2303 2762 3.304123 GGCAATGCTACACGTACAAACAA 60.304 43.478 4.82 0.00 0.00 2.83
2304 2763 4.472286 GCAATGCTACACGTACAAACAAT 58.528 39.130 0.00 0.00 0.00 2.71
2305 2764 4.915085 GCAATGCTACACGTACAAACAATT 59.085 37.500 0.00 0.00 0.00 2.32
2306 2765 5.401079 GCAATGCTACACGTACAAACAATTT 59.599 36.000 0.00 0.00 0.00 1.82
2307 2766 6.579292 GCAATGCTACACGTACAAACAATTTA 59.421 34.615 0.00 0.00 0.00 1.40
2308 2767 7.408921 GCAATGCTACACGTACAAACAATTTAC 60.409 37.037 0.00 0.00 0.00 2.01
2309 2768 6.600246 TGCTACACGTACAAACAATTTACA 57.400 33.333 0.00 0.00 0.00 2.41
2310 2769 6.651308 TGCTACACGTACAAACAATTTACAG 58.349 36.000 0.00 0.00 0.00 2.74
2311 2770 6.075280 GCTACACGTACAAACAATTTACAGG 58.925 40.000 0.00 0.00 0.00 4.00
2312 2771 4.851010 ACACGTACAAACAATTTACAGGC 58.149 39.130 0.00 0.00 0.00 4.85
2313 2772 4.577283 ACACGTACAAACAATTTACAGGCT 59.423 37.500 0.00 0.00 0.00 4.58
2314 2773 5.066764 ACACGTACAAACAATTTACAGGCTT 59.933 36.000 0.00 0.00 0.00 4.35
2315 2774 5.974751 CACGTACAAACAATTTACAGGCTTT 59.025 36.000 0.00 0.00 0.00 3.51
2316 2775 6.474102 CACGTACAAACAATTTACAGGCTTTT 59.526 34.615 0.00 0.00 0.00 2.27
2317 2776 7.644551 CACGTACAAACAATTTACAGGCTTTTA 59.355 33.333 0.00 0.00 0.00 1.52
2318 2777 7.644945 ACGTACAAACAATTTACAGGCTTTTAC 59.355 33.333 0.00 0.00 0.00 2.01
2319 2778 7.644551 CGTACAAACAATTTACAGGCTTTTACA 59.355 33.333 0.00 0.00 0.00 2.41
2320 2779 8.964150 GTACAAACAATTTACAGGCTTTTACAG 58.036 33.333 0.00 0.00 0.00 2.74
2321 2780 6.983890 ACAAACAATTTACAGGCTTTTACAGG 59.016 34.615 0.00 0.00 0.00 4.00
2322 2781 6.969993 AACAATTTACAGGCTTTTACAGGA 57.030 33.333 0.00 0.00 0.00 3.86
2323 2782 7.539034 AACAATTTACAGGCTTTTACAGGAT 57.461 32.000 0.00 0.00 0.00 3.24
2324 2783 6.924111 ACAATTTACAGGCTTTTACAGGATG 58.076 36.000 0.00 0.00 46.00 3.51
2325 2784 6.071391 ACAATTTACAGGCTTTTACAGGATGG 60.071 38.462 0.00 0.00 43.62 3.51
2326 2785 4.650972 TTACAGGCTTTTACAGGATGGT 57.349 40.909 0.00 0.00 43.62 3.55
2327 2786 3.525800 ACAGGCTTTTACAGGATGGTT 57.474 42.857 0.00 0.00 43.62 3.67
2328 2787 3.157087 ACAGGCTTTTACAGGATGGTTG 58.843 45.455 0.00 0.00 43.62 3.77
2329 2788 3.181434 ACAGGCTTTTACAGGATGGTTGA 60.181 43.478 0.00 0.00 43.62 3.18
2330 2789 3.191371 CAGGCTTTTACAGGATGGTTGAC 59.809 47.826 0.00 0.00 43.62 3.18
2331 2790 2.492088 GGCTTTTACAGGATGGTTGACC 59.508 50.000 0.00 0.00 43.62 4.02
2332 2791 3.421844 GCTTTTACAGGATGGTTGACCT 58.578 45.455 1.34 0.00 43.62 3.85
2333 2792 3.826729 GCTTTTACAGGATGGTTGACCTT 59.173 43.478 1.34 0.00 43.62 3.50
2334 2793 4.321230 GCTTTTACAGGATGGTTGACCTTG 60.321 45.833 1.34 0.00 43.62 3.61
2335 2794 4.715534 TTTACAGGATGGTTGACCTTGA 57.284 40.909 1.34 0.00 43.62 3.02
2336 2795 4.927267 TTACAGGATGGTTGACCTTGAT 57.073 40.909 1.34 0.00 43.62 2.57
2337 2796 3.814504 ACAGGATGGTTGACCTTGATT 57.185 42.857 1.34 0.00 43.62 2.57
2338 2797 3.424703 ACAGGATGGTTGACCTTGATTG 58.575 45.455 1.34 0.00 43.62 2.67
2339 2798 2.756760 CAGGATGGTTGACCTTGATTGG 59.243 50.000 1.34 0.00 36.82 3.16
2340 2799 2.379907 AGGATGGTTGACCTTGATTGGT 59.620 45.455 1.34 0.00 44.10 3.67
2350 2809 4.927267 ACCTTGATTGGTCAATAGGTGA 57.073 40.909 14.14 0.00 41.74 4.02
2351 2810 4.848357 ACCTTGATTGGTCAATAGGTGAG 58.152 43.478 14.14 2.65 41.74 3.51
2355 2814 4.857251 GGTCAATAGGTGAGCGGG 57.143 61.111 0.00 0.00 44.38 6.13
2356 2815 1.146263 GGTCAATAGGTGAGCGGGG 59.854 63.158 0.00 0.00 44.38 5.73
2357 2816 1.523938 GTCAATAGGTGAGCGGGGC 60.524 63.158 0.00 0.00 36.74 5.80
2358 2817 2.588877 CAATAGGTGAGCGGGGCG 60.589 66.667 0.00 0.00 0.00 6.13
2359 2818 3.861797 AATAGGTGAGCGGGGCGG 61.862 66.667 0.00 0.00 0.00 6.13
2384 2843 2.159179 CCCCCTGAAAATTAGGTGGG 57.841 55.000 0.00 0.00 38.56 4.61
2385 2844 1.643811 CCCCCTGAAAATTAGGTGGGA 59.356 52.381 11.31 0.00 43.24 4.37
2386 2845 2.358195 CCCCCTGAAAATTAGGTGGGAG 60.358 54.545 11.31 0.00 43.24 4.30
2387 2846 2.580783 CCCCTGAAAATTAGGTGGGAGA 59.419 50.000 0.00 0.00 36.90 3.71
2388 2847 3.372025 CCCCTGAAAATTAGGTGGGAGAG 60.372 52.174 0.00 0.00 36.90 3.20
2389 2848 3.523564 CCCTGAAAATTAGGTGGGAGAGA 59.476 47.826 0.00 0.00 36.90 3.10
2390 2849 4.166919 CCCTGAAAATTAGGTGGGAGAGAT 59.833 45.833 0.00 0.00 36.90 2.75
2391 2850 5.340360 CCCTGAAAATTAGGTGGGAGAGATT 60.340 44.000 0.00 0.00 36.90 2.40
2392 2851 6.190587 CCTGAAAATTAGGTGGGAGAGATTT 58.809 40.000 0.00 0.00 0.00 2.17
2393 2852 6.096001 CCTGAAAATTAGGTGGGAGAGATTTG 59.904 42.308 0.00 0.00 0.00 2.32
2394 2853 6.552008 TGAAAATTAGGTGGGAGAGATTTGT 58.448 36.000 0.00 0.00 0.00 2.83
2395 2854 6.434028 TGAAAATTAGGTGGGAGAGATTTGTG 59.566 38.462 0.00 0.00 0.00 3.33
2396 2855 5.779241 AATTAGGTGGGAGAGATTTGTGA 57.221 39.130 0.00 0.00 0.00 3.58
2397 2856 5.983333 ATTAGGTGGGAGAGATTTGTGAT 57.017 39.130 0.00 0.00 0.00 3.06
2398 2857 5.779241 TTAGGTGGGAGAGATTTGTGATT 57.221 39.130 0.00 0.00 0.00 2.57
2399 2858 3.960571 AGGTGGGAGAGATTTGTGATTG 58.039 45.455 0.00 0.00 0.00 2.67
2400 2859 3.019564 GGTGGGAGAGATTTGTGATTGG 58.980 50.000 0.00 0.00 0.00 3.16
2401 2860 3.562176 GGTGGGAGAGATTTGTGATTGGT 60.562 47.826 0.00 0.00 0.00 3.67
2402 2861 4.082125 GTGGGAGAGATTTGTGATTGGTT 58.918 43.478 0.00 0.00 0.00 3.67
2403 2862 4.081406 TGGGAGAGATTTGTGATTGGTTG 58.919 43.478 0.00 0.00 0.00 3.77
2404 2863 4.082125 GGGAGAGATTTGTGATTGGTTGT 58.918 43.478 0.00 0.00 0.00 3.32
2405 2864 4.524328 GGGAGAGATTTGTGATTGGTTGTT 59.476 41.667 0.00 0.00 0.00 2.83
2406 2865 5.710099 GGGAGAGATTTGTGATTGGTTGTTA 59.290 40.000 0.00 0.00 0.00 2.41
2407 2866 6.127897 GGGAGAGATTTGTGATTGGTTGTTAG 60.128 42.308 0.00 0.00 0.00 2.34
2408 2867 6.655003 GGAGAGATTTGTGATTGGTTGTTAGA 59.345 38.462 0.00 0.00 0.00 2.10
2409 2868 7.337942 GGAGAGATTTGTGATTGGTTGTTAGAT 59.662 37.037 0.00 0.00 0.00 1.98
2410 2869 8.048534 AGAGATTTGTGATTGGTTGTTAGATG 57.951 34.615 0.00 0.00 0.00 2.90
2411 2870 7.121759 AGAGATTTGTGATTGGTTGTTAGATGG 59.878 37.037 0.00 0.00 0.00 3.51
2412 2871 6.947733 AGATTTGTGATTGGTTGTTAGATGGA 59.052 34.615 0.00 0.00 0.00 3.41
2413 2872 6.968263 TTTGTGATTGGTTGTTAGATGGAA 57.032 33.333 0.00 0.00 0.00 3.53
2414 2873 5.957842 TGTGATTGGTTGTTAGATGGAAC 57.042 39.130 0.00 0.00 0.00 3.62
2415 2874 4.454161 TGTGATTGGTTGTTAGATGGAACG 59.546 41.667 0.00 0.00 31.59 3.95
2416 2875 4.693566 GTGATTGGTTGTTAGATGGAACGA 59.306 41.667 0.00 0.00 31.59 3.85
2417 2876 4.935205 TGATTGGTTGTTAGATGGAACGAG 59.065 41.667 0.00 0.00 31.59 4.18
2418 2877 2.695359 TGGTTGTTAGATGGAACGAGC 58.305 47.619 0.00 0.00 40.27 5.03
2419 2878 1.659098 GGTTGTTAGATGGAACGAGCG 59.341 52.381 0.00 0.00 32.96 5.03
2420 2879 2.334838 GTTGTTAGATGGAACGAGCGT 58.665 47.619 0.00 0.00 31.59 5.07
2421 2880 1.990799 TGTTAGATGGAACGAGCGTG 58.009 50.000 0.00 0.00 31.59 5.34
2422 2881 1.271379 TGTTAGATGGAACGAGCGTGT 59.729 47.619 0.00 0.00 31.59 4.49
2423 2882 2.488937 TGTTAGATGGAACGAGCGTGTA 59.511 45.455 0.00 0.00 31.59 2.90
2424 2883 3.057386 TGTTAGATGGAACGAGCGTGTAA 60.057 43.478 0.00 0.00 31.59 2.41
2425 2884 2.736144 AGATGGAACGAGCGTGTAAA 57.264 45.000 0.00 0.00 0.00 2.01
2426 2885 3.034721 AGATGGAACGAGCGTGTAAAA 57.965 42.857 0.00 0.00 0.00 1.52
2427 2886 2.993899 AGATGGAACGAGCGTGTAAAAG 59.006 45.455 0.00 0.00 0.00 2.27
2428 2887 0.863144 TGGAACGAGCGTGTAAAAGC 59.137 50.000 0.00 0.00 0.00 3.51
2429 2888 0.179258 GGAACGAGCGTGTAAAAGCG 60.179 55.000 0.00 0.00 38.61 4.68
2430 2889 0.505655 GAACGAGCGTGTAAAAGCGT 59.494 50.000 0.00 0.00 38.61 5.07
2431 2890 0.231279 AACGAGCGTGTAAAAGCGTG 59.769 50.000 0.00 0.00 38.61 5.34
2432 2891 0.872881 ACGAGCGTGTAAAAGCGTGT 60.873 50.000 0.00 0.00 38.61 4.49
2433 2892 1.054574 CGAGCGTGTAAAAGCGTGTA 58.945 50.000 0.00 0.00 38.61 2.90
2434 2893 1.452773 CGAGCGTGTAAAAGCGTGTAA 59.547 47.619 0.00 0.00 38.61 2.41
2435 2894 2.470140 CGAGCGTGTAAAAGCGTGTAAG 60.470 50.000 0.00 0.00 38.61 2.34
2436 2895 2.473984 GAGCGTGTAAAAGCGTGTAAGT 59.526 45.455 0.00 0.00 38.61 2.24
2437 2896 2.473984 AGCGTGTAAAAGCGTGTAAGTC 59.526 45.455 0.00 0.00 38.61 3.01
2438 2897 2.473984 GCGTGTAAAAGCGTGTAAGTCT 59.526 45.455 0.00 0.00 0.00 3.24
2439 2898 3.060070 GCGTGTAAAAGCGTGTAAGTCTT 60.060 43.478 0.00 0.00 0.00 3.01
2440 2899 4.551410 GCGTGTAAAAGCGTGTAAGTCTTT 60.551 41.667 0.00 0.00 0.00 2.52
2441 2900 4.896238 CGTGTAAAAGCGTGTAAGTCTTTG 59.104 41.667 0.00 0.00 31.21 2.77
2442 2901 5.501252 CGTGTAAAAGCGTGTAAGTCTTTGT 60.501 40.000 0.00 0.00 31.21 2.83
2443 2902 6.291743 CGTGTAAAAGCGTGTAAGTCTTTGTA 60.292 38.462 0.00 0.00 31.21 2.41
2444 2903 7.568134 CGTGTAAAAGCGTGTAAGTCTTTGTAT 60.568 37.037 0.00 0.00 31.21 2.29
2445 2904 7.529519 GTGTAAAAGCGTGTAAGTCTTTGTATG 59.470 37.037 0.00 0.00 31.21 2.39
2446 2905 6.613755 AAAAGCGTGTAAGTCTTTGTATGT 57.386 33.333 0.00 0.00 31.21 2.29
2447 2906 5.840940 AAGCGTGTAAGTCTTTGTATGTC 57.159 39.130 0.00 0.00 0.00 3.06
2448 2907 5.135508 AGCGTGTAAGTCTTTGTATGTCT 57.864 39.130 0.00 0.00 0.00 3.41
2449 2908 6.263516 AGCGTGTAAGTCTTTGTATGTCTA 57.736 37.500 0.00 0.00 0.00 2.59
2450 2909 6.323266 AGCGTGTAAGTCTTTGTATGTCTAG 58.677 40.000 0.00 0.00 0.00 2.43
2451 2910 5.004535 GCGTGTAAGTCTTTGTATGTCTAGC 59.995 44.000 0.00 0.00 0.00 3.42
2452 2911 6.090783 CGTGTAAGTCTTTGTATGTCTAGCA 58.909 40.000 0.00 0.00 0.00 3.49
2453 2912 6.752351 CGTGTAAGTCTTTGTATGTCTAGCAT 59.248 38.462 0.00 5.25 41.42 3.79
2454 2913 7.275779 CGTGTAAGTCTTTGTATGTCTAGCATT 59.724 37.037 5.22 0.00 38.94 3.56
2455 2914 8.936864 GTGTAAGTCTTTGTATGTCTAGCATTT 58.063 33.333 5.22 0.00 38.94 2.32
2456 2915 9.502091 TGTAAGTCTTTGTATGTCTAGCATTTT 57.498 29.630 5.22 0.00 38.94 1.82
2494 2955 4.016444 GTTTGGTTCAGATAATGCCTGGA 58.984 43.478 0.00 0.00 32.73 3.86
2495 2956 4.524802 TTGGTTCAGATAATGCCTGGAT 57.475 40.909 0.00 0.00 32.73 3.41
2496 2957 4.524802 TGGTTCAGATAATGCCTGGATT 57.475 40.909 0.00 0.00 32.73 3.01
2497 2958 4.209538 TGGTTCAGATAATGCCTGGATTG 58.790 43.478 0.00 0.00 32.73 2.67
2498 2959 4.079844 TGGTTCAGATAATGCCTGGATTGA 60.080 41.667 0.00 0.00 32.73 2.57
2505 2981 5.370880 AGATAATGCCTGGATTGAGTAACCT 59.629 40.000 0.00 0.00 0.00 3.50
2510 2986 3.561313 GCCTGGATTGAGTAACCTTCCAA 60.561 47.826 0.00 0.00 36.12 3.53
2526 3002 2.696775 TCCAACTCCAGGGTTGTAAGA 58.303 47.619 9.45 0.00 43.36 2.10
2530 3006 4.019681 CCAACTCCAGGGTTGTAAGATACA 60.020 45.833 9.45 0.00 43.36 2.29
2589 3227 4.640201 GCAGTGCTATAATGGAAACCAAGA 59.360 41.667 8.18 0.00 36.95 3.02
2596 3235 6.643770 GCTATAATGGAAACCAAGAATGCATG 59.356 38.462 0.00 0.00 36.95 4.06
2614 3253 4.168760 GCATGGTCTTTTATGCAACACTC 58.831 43.478 0.00 0.00 46.72 3.51
2616 3255 3.472652 TGGTCTTTTATGCAACACTCGT 58.527 40.909 0.00 0.00 0.00 4.18
2778 4129 8.417780 TTTAGTGGTTCAACATCAATTTTGTG 57.582 30.769 0.00 0.00 0.00 3.33
2784 4164 6.144402 GGTTCAACATCAATTTTGTGCTACAG 59.856 38.462 0.00 0.00 0.00 2.74
2796 4176 5.731957 TTGTGCTACAGATACCTTACACA 57.268 39.130 0.00 0.00 35.18 3.72
2870 4846 4.885325 GGGAAGGTAAATAATGCGGAGAAA 59.115 41.667 0.00 0.00 0.00 2.52
2894 4870 2.654079 CGAGCAAGGAGGTGAGGCT 61.654 63.158 0.00 0.00 37.56 4.58
2946 4951 1.265454 GGATTGACCGGAGTGGAGGT 61.265 60.000 9.46 0.00 44.64 3.85
2993 5000 6.425577 AGAGATTAAGACGAGTGTACTGAC 57.574 41.667 0.00 0.00 0.00 3.51
3040 5047 3.009033 ACAACTACCAATAGCAGCCAAGA 59.991 43.478 0.00 0.00 30.75 3.02
3059 5066 8.660435 AGCCAAGAATACTAGAAATAGCCAATA 58.340 33.333 0.00 0.00 0.00 1.90
3068 5075 2.841442 AATAGCCAATAGGTCTCGGC 57.159 50.000 0.00 0.00 45.23 5.54
3078 5085 2.696526 AGGTCTCGGCTCCCATATAA 57.303 50.000 0.00 0.00 0.00 0.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 45 8.729756 TCACGAGAAACATGAATATGAAAACAT 58.270 29.630 0.00 0.00 37.73 2.71
60 62 0.531974 AAAGCGCTGGTCACGAGAAA 60.532 50.000 12.58 0.00 0.00 2.52
73 75 6.531240 TCAAAATGGATCTTATTTGAAAGCGC 59.469 34.615 0.00 0.00 38.45 5.92
222 224 9.573133 ACAATCAAGTTTCAACAAGTTTTAGAG 57.427 29.630 0.00 0.00 0.00 2.43
232 234 7.978414 TGCATCTAAAACAATCAAGTTTCAACA 59.022 29.630 0.00 0.00 40.60 3.33
233 235 8.351495 TGCATCTAAAACAATCAAGTTTCAAC 57.649 30.769 0.00 0.00 40.60 3.18
300 302 5.355350 CGAGGGCACAATAGAAAGAAAATCT 59.645 40.000 0.00 0.00 0.00 2.40
309 311 0.739462 CGCACGAGGGCACAATAGAA 60.739 55.000 0.00 0.00 0.00 2.10
311 313 2.173669 CCGCACGAGGGCACAATAG 61.174 63.158 0.00 0.00 0.00 1.73
324 327 3.124636 CACACAGTAGTTTAATCCCGCAC 59.875 47.826 0.00 0.00 0.00 5.34
327 330 4.196626 TCCACACAGTAGTTTAATCCCG 57.803 45.455 0.00 0.00 0.00 5.14
334 337 3.306088 CCTCACGATCCACACAGTAGTTT 60.306 47.826 0.00 0.00 0.00 2.66
343 346 1.234821 GTTTTGCCTCACGATCCACA 58.765 50.000 0.00 0.00 0.00 4.17
345 348 0.034198 TCGTTTTGCCTCACGATCCA 59.966 50.000 0.00 0.00 40.43 3.41
347 350 1.529438 TGTTCGTTTTGCCTCACGATC 59.471 47.619 2.62 3.31 44.52 3.69
352 355 0.749818 TGCCTGTTCGTTTTGCCTCA 60.750 50.000 0.00 0.00 0.00 3.86
354 357 2.032981 CTGCCTGTTCGTTTTGCCT 58.967 52.632 0.00 0.00 0.00 4.75
361 364 2.031163 GACCTGCTGCCTGTTCGT 59.969 61.111 0.00 0.00 0.00 3.85
365 368 2.433446 CCAAGACCTGCTGCCTGT 59.567 61.111 0.00 0.00 0.00 4.00
367 370 3.564345 CTGCCAAGACCTGCTGCCT 62.564 63.158 0.00 0.00 0.00 4.75
373 376 0.604780 CACTCACCTGCCAAGACCTG 60.605 60.000 0.00 0.00 0.00 4.00
377 380 1.372683 GAGCACTCACCTGCCAAGA 59.627 57.895 0.00 0.00 37.96 3.02
410 413 1.279840 GAAACGGATATGCGCAGGC 59.720 57.895 18.32 7.35 40.52 4.85
420 423 2.759355 TCATAGTGGGAGGAAACGGAT 58.241 47.619 0.00 0.00 0.00 4.18
427 430 5.724370 TCAAAGTGTATTCATAGTGGGAGGA 59.276 40.000 0.00 0.00 0.00 3.71
449 452 4.623932 AGAACCATTAGAGCAGTGTTCA 57.376 40.909 9.82 0.00 35.68 3.18
494 497 1.807742 TCCGGGCAAACGAACATAAAG 59.192 47.619 0.00 0.00 35.47 1.85
500 503 0.312729 ACAATTCCGGGCAAACGAAC 59.687 50.000 0.00 0.00 35.47 3.95
503 506 1.281566 GCAACAATTCCGGGCAAACG 61.282 55.000 0.00 0.00 0.00 3.60
569 578 1.131638 GGTGATAGGACATGGGAGCA 58.868 55.000 0.00 0.00 0.00 4.26
607 625 7.114754 TGATGGATAAAGATCATATTCAGCCC 58.885 38.462 10.73 1.61 33.27 5.19
631 649 0.179156 GCATGTGGTTGCCGATCTTG 60.179 55.000 0.00 0.00 36.60 3.02
669 690 9.236006 GGCATTTGGAGTATATATGTGAGAAAT 57.764 33.333 0.00 0.00 0.00 2.17
672 693 7.315066 TGGCATTTGGAGTATATATGTGAGA 57.685 36.000 0.00 0.00 0.00 3.27
673 694 8.571461 AATGGCATTTGGAGTATATATGTGAG 57.429 34.615 6.96 0.00 0.00 3.51
674 695 8.795513 CAAATGGCATTTGGAGTATATATGTGA 58.204 33.333 34.65 0.00 44.44 3.58
675 696 8.975410 CAAATGGCATTTGGAGTATATATGTG 57.025 34.615 34.65 13.18 44.44 3.21
769 798 5.489792 TTCTCTGGTTGACTAAGAGCAAT 57.510 39.130 8.56 0.00 37.86 3.56
808 841 4.074970 AGGCTTGTGGAAAAGTATGACAG 58.925 43.478 0.00 0.00 0.00 3.51
970 1030 6.471519 CGCAAACTTATCTAGCTACGTACTTT 59.528 38.462 0.00 0.00 0.00 2.66
972 1032 5.295292 TCGCAAACTTATCTAGCTACGTACT 59.705 40.000 0.00 0.00 0.00 2.73
1010 1074 1.274703 CCATGCCCTACAGGTGGAGT 61.275 60.000 0.00 0.00 38.26 3.85
1083 1147 1.028330 TCCTCGCATAGAACGACGGT 61.028 55.000 0.00 0.00 35.35 4.83
1114 1178 3.792047 GCGCACGATCAGCTGCAA 61.792 61.111 9.47 0.00 32.57 4.08
1223 1287 8.812147 ATGTTTGCTTAAAGGTTTAGTTTAGC 57.188 30.769 0.00 0.00 0.00 3.09
1270 1363 8.621286 TGACCTTCTCTGTGAAAAGAAAATTAC 58.379 33.333 0.00 0.00 33.79 1.89
1322 1458 6.238953 CCCGTCACAGCCCTATATATACATAC 60.239 46.154 0.00 0.00 0.00 2.39
1406 1548 1.759299 TAGCCCCGCACCGAGTTAT 60.759 57.895 0.00 0.00 0.00 1.89
1407 1549 2.362760 TAGCCCCGCACCGAGTTA 60.363 61.111 0.00 0.00 0.00 2.24
1447 1589 2.811317 GAGCAGCTCCACGTTCCG 60.811 66.667 11.84 0.00 0.00 4.30
1539 1689 2.964464 TGTGCCAAATGTCCACTGATTT 59.036 40.909 0.00 0.00 0.00 2.17
1545 1695 0.318955 GCACTGTGCCAAATGTCCAC 60.319 55.000 21.78 0.00 37.42 4.02
1552 1703 0.744771 TGTACGTGCACTGTGCCAAA 60.745 50.000 28.17 8.76 44.23 3.28
1554 1705 1.153349 TTGTACGTGCACTGTGCCA 60.153 52.632 28.17 16.22 44.23 4.92
1561 1743 4.973663 AGCATTAAAAACTTGTACGTGCAC 59.026 37.500 5.60 6.82 32.82 4.57
1567 1753 7.979115 TGTTGTCAGCATTAAAAACTTGTAC 57.021 32.000 0.00 0.00 0.00 2.90
1568 1754 8.247562 ACTTGTTGTCAGCATTAAAAACTTGTA 58.752 29.630 0.00 0.00 0.00 2.41
1570 1756 7.063308 ACACTTGTTGTCAGCATTAAAAACTTG 59.937 33.333 0.00 0.00 29.79 3.16
1572 1758 6.630071 ACACTTGTTGTCAGCATTAAAAACT 58.370 32.000 0.00 0.00 29.79 2.66
1592 1805 2.114616 CCCTAGCTGATCCAAGACACT 58.885 52.381 0.00 0.00 0.00 3.55
1594 1807 1.500474 CCCCTAGCTGATCCAAGACA 58.500 55.000 0.00 0.00 0.00 3.41
1595 1808 0.761802 CCCCCTAGCTGATCCAAGAC 59.238 60.000 0.00 0.00 0.00 3.01
1596 1809 3.247424 CCCCCTAGCTGATCCAAGA 57.753 57.895 0.00 0.00 0.00 3.02
1645 1888 2.805353 CTGGCCGTCGTTGAGTCG 60.805 66.667 0.00 0.00 0.00 4.18
1693 1936 1.272807 CGTCCAGGGTTAAGAAGGGA 58.727 55.000 0.00 0.00 0.00 4.20
1718 1961 1.126846 CTTCTTGTCGAACGCCATGAC 59.873 52.381 0.00 0.00 0.00 3.06
1722 1965 1.497991 CTTCTTCTTGTCGAACGCCA 58.502 50.000 0.00 0.00 0.00 5.69
1744 1987 2.280592 GTGAGGTCACGCGGGTTT 60.281 61.111 8.89 0.00 37.10 3.27
1768 2011 4.221422 ATAGTGTGCGCGCCGGAT 62.221 61.111 30.77 14.88 0.00 4.18
1783 2026 0.747255 GGCACTGAGAGAAGCCGATA 59.253 55.000 0.00 0.00 37.41 2.92
1795 2038 1.301716 GCGGAAGTTGAGGCACTGA 60.302 57.895 0.00 0.00 41.55 3.41
1858 2101 2.738521 CAGGTACGCTTGCGCAGT 60.739 61.111 11.31 8.26 35.30 4.40
2110 2353 4.681978 GCGGTTCCAGTCAGCGGT 62.682 66.667 0.00 0.00 35.67 5.68
2200 2451 3.606846 CGCACTCATTTTACGCCCATATG 60.607 47.826 0.00 0.00 0.00 1.78
2205 2456 1.361793 TACGCACTCATTTTACGCCC 58.638 50.000 0.00 0.00 0.00 6.13
2217 2468 3.480505 ACCAACCTAACTTTACGCACT 57.519 42.857 0.00 0.00 0.00 4.40
2240 2491 4.509230 TGCTAGGTGATTACTACGTAGACG 59.491 45.833 28.74 4.04 46.33 4.18
2241 2492 5.998454 TGCTAGGTGATTACTACGTAGAC 57.002 43.478 28.74 15.24 38.25 2.59
2242 2493 5.048921 GCATGCTAGGTGATTACTACGTAGA 60.049 44.000 28.74 8.07 38.25 2.59
2250 2565 2.227388 GCCATGCATGCTAGGTGATTAC 59.773 50.000 21.69 3.13 0.00 1.89
2251 2566 2.158638 TGCCATGCATGCTAGGTGATTA 60.159 45.455 21.69 0.00 31.71 1.75
2254 2569 0.464916 CTGCCATGCATGCTAGGTGA 60.465 55.000 21.69 10.20 38.13 4.02
2257 2572 1.617322 ATTCTGCCATGCATGCTAGG 58.383 50.000 21.69 20.36 38.13 3.02
2270 2729 0.383231 AGCATTGCCGCTTATTCTGC 59.617 50.000 4.70 0.00 39.99 4.26
2271 2730 2.613595 TGTAGCATTGCCGCTTATTCTG 59.386 45.455 4.70 0.00 43.56 3.02
2272 2731 2.614057 GTGTAGCATTGCCGCTTATTCT 59.386 45.455 4.70 0.00 43.56 2.40
2273 2732 2.599848 CGTGTAGCATTGCCGCTTATTC 60.600 50.000 4.70 0.00 43.56 1.75
2274 2733 1.330521 CGTGTAGCATTGCCGCTTATT 59.669 47.619 4.70 0.00 43.56 1.40
2275 2734 0.937304 CGTGTAGCATTGCCGCTTAT 59.063 50.000 4.70 0.00 43.56 1.73
2276 2735 0.390603 ACGTGTAGCATTGCCGCTTA 60.391 50.000 4.70 0.00 43.56 3.09
2277 2736 0.390603 TACGTGTAGCATTGCCGCTT 60.391 50.000 4.70 0.00 43.56 4.68
2278 2737 1.082117 GTACGTGTAGCATTGCCGCT 61.082 55.000 4.70 0.00 46.26 5.52
2279 2738 1.347221 GTACGTGTAGCATTGCCGC 59.653 57.895 4.70 0.00 0.00 6.53
2280 2739 1.072391 TTGTACGTGTAGCATTGCCG 58.928 50.000 4.70 4.23 0.00 5.69
2281 2740 2.224549 TGTTTGTACGTGTAGCATTGCC 59.775 45.455 4.70 0.00 0.00 4.52
2282 2741 3.529634 TGTTTGTACGTGTAGCATTGC 57.470 42.857 0.00 0.00 0.00 3.56
2283 2742 6.984740 AAATTGTTTGTACGTGTAGCATTG 57.015 33.333 0.00 0.00 0.00 2.82
2284 2743 7.640852 TGTAAATTGTTTGTACGTGTAGCATT 58.359 30.769 0.00 0.00 0.00 3.56
2285 2744 7.192148 TGTAAATTGTTTGTACGTGTAGCAT 57.808 32.000 0.00 0.00 0.00 3.79
2286 2745 6.292973 CCTGTAAATTGTTTGTACGTGTAGCA 60.293 38.462 0.00 0.00 0.00 3.49
2287 2746 6.075280 CCTGTAAATTGTTTGTACGTGTAGC 58.925 40.000 0.00 0.00 0.00 3.58
2288 2747 6.073440 AGCCTGTAAATTGTTTGTACGTGTAG 60.073 38.462 0.00 0.00 0.00 2.74
2289 2748 5.759273 AGCCTGTAAATTGTTTGTACGTGTA 59.241 36.000 0.00 0.00 0.00 2.90
2290 2749 4.577283 AGCCTGTAAATTGTTTGTACGTGT 59.423 37.500 0.00 0.00 0.00 4.49
2291 2750 5.103290 AGCCTGTAAATTGTTTGTACGTG 57.897 39.130 0.00 0.00 0.00 4.49
2292 2751 5.761165 AAGCCTGTAAATTGTTTGTACGT 57.239 34.783 0.00 0.00 0.00 3.57
2293 2752 7.644551 TGTAAAAGCCTGTAAATTGTTTGTACG 59.355 33.333 0.00 0.00 0.00 3.67
2294 2753 8.859517 TGTAAAAGCCTGTAAATTGTTTGTAC 57.140 30.769 0.00 0.00 0.00 2.90
2295 2754 8.138712 CCTGTAAAAGCCTGTAAATTGTTTGTA 58.861 33.333 0.00 0.00 0.00 2.41
2296 2755 6.983890 CCTGTAAAAGCCTGTAAATTGTTTGT 59.016 34.615 0.00 0.00 0.00 2.83
2297 2756 7.206687 TCCTGTAAAAGCCTGTAAATTGTTTG 58.793 34.615 0.00 0.00 0.00 2.93
2298 2757 7.354751 TCCTGTAAAAGCCTGTAAATTGTTT 57.645 32.000 0.00 0.00 0.00 2.83
2299 2758 6.969993 TCCTGTAAAAGCCTGTAAATTGTT 57.030 33.333 0.00 0.00 0.00 2.83
2300 2759 6.071391 CCATCCTGTAAAAGCCTGTAAATTGT 60.071 38.462 0.00 0.00 0.00 2.71
2301 2760 6.071391 ACCATCCTGTAAAAGCCTGTAAATTG 60.071 38.462 0.00 0.00 0.00 2.32
2302 2761 6.016555 ACCATCCTGTAAAAGCCTGTAAATT 58.983 36.000 0.00 0.00 0.00 1.82
2303 2762 5.580022 ACCATCCTGTAAAAGCCTGTAAAT 58.420 37.500 0.00 0.00 0.00 1.40
2304 2763 4.993028 ACCATCCTGTAAAAGCCTGTAAA 58.007 39.130 0.00 0.00 0.00 2.01
2305 2764 4.650972 ACCATCCTGTAAAAGCCTGTAA 57.349 40.909 0.00 0.00 0.00 2.41
2306 2765 4.042311 TCAACCATCCTGTAAAAGCCTGTA 59.958 41.667 0.00 0.00 0.00 2.74
2307 2766 3.157087 CAACCATCCTGTAAAAGCCTGT 58.843 45.455 0.00 0.00 0.00 4.00
2308 2767 3.191371 GTCAACCATCCTGTAAAAGCCTG 59.809 47.826 0.00 0.00 0.00 4.85
2309 2768 3.421844 GTCAACCATCCTGTAAAAGCCT 58.578 45.455 0.00 0.00 0.00 4.58
2310 2769 2.492088 GGTCAACCATCCTGTAAAAGCC 59.508 50.000 0.00 0.00 35.64 4.35
2311 2770 3.421844 AGGTCAACCATCCTGTAAAAGC 58.578 45.455 1.33 0.00 38.89 3.51
2312 2771 5.070001 TCAAGGTCAACCATCCTGTAAAAG 58.930 41.667 1.33 0.00 38.89 2.27
2313 2772 5.055265 TCAAGGTCAACCATCCTGTAAAA 57.945 39.130 1.33 0.00 38.89 1.52
2314 2773 4.715534 TCAAGGTCAACCATCCTGTAAA 57.284 40.909 1.33 0.00 38.89 2.01
2315 2774 4.927267 ATCAAGGTCAACCATCCTGTAA 57.073 40.909 1.33 0.00 38.89 2.41
2316 2775 4.567537 CCAATCAAGGTCAACCATCCTGTA 60.568 45.833 1.33 0.00 38.89 2.74
2317 2776 3.424703 CAATCAAGGTCAACCATCCTGT 58.575 45.455 1.33 0.00 38.89 4.00
2318 2777 2.756760 CCAATCAAGGTCAACCATCCTG 59.243 50.000 1.33 0.00 38.89 3.86
2319 2778 2.379907 ACCAATCAAGGTCAACCATCCT 59.620 45.455 1.33 0.00 37.28 3.24
2320 2779 2.807676 ACCAATCAAGGTCAACCATCC 58.192 47.619 1.33 0.00 37.28 3.51
2333 2792 2.419990 CCGCTCACCTATTGACCAATCA 60.420 50.000 0.00 0.00 32.50 2.57
2334 2793 2.213499 CCGCTCACCTATTGACCAATC 58.787 52.381 0.00 0.00 32.50 2.67
2335 2794 1.134098 CCCGCTCACCTATTGACCAAT 60.134 52.381 0.64 0.64 34.93 3.16
2336 2795 0.251916 CCCGCTCACCTATTGACCAA 59.748 55.000 0.00 0.00 0.00 3.67
2337 2796 1.622607 CCCCGCTCACCTATTGACCA 61.623 60.000 0.00 0.00 0.00 4.02
2338 2797 1.146263 CCCCGCTCACCTATTGACC 59.854 63.158 0.00 0.00 0.00 4.02
2339 2798 1.523938 GCCCCGCTCACCTATTGAC 60.524 63.158 0.00 0.00 0.00 3.18
2340 2799 2.908015 GCCCCGCTCACCTATTGA 59.092 61.111 0.00 0.00 0.00 2.57
2341 2800 2.588877 CGCCCCGCTCACCTATTG 60.589 66.667 0.00 0.00 0.00 1.90
2342 2801 3.861797 CCGCCCCGCTCACCTATT 61.862 66.667 0.00 0.00 0.00 1.73
2366 2825 2.580783 TCTCCCACCTAATTTTCAGGGG 59.419 50.000 0.00 0.00 37.51 4.79
2367 2826 3.523564 TCTCTCCCACCTAATTTTCAGGG 59.476 47.826 0.00 0.00 37.51 4.45
2368 2827 4.844349 TCTCTCCCACCTAATTTTCAGG 57.156 45.455 0.00 0.00 39.25 3.86
2369 2828 6.660949 ACAAATCTCTCCCACCTAATTTTCAG 59.339 38.462 0.00 0.00 0.00 3.02
2370 2829 6.434028 CACAAATCTCTCCCACCTAATTTTCA 59.566 38.462 0.00 0.00 0.00 2.69
2371 2830 6.659242 TCACAAATCTCTCCCACCTAATTTTC 59.341 38.462 0.00 0.00 0.00 2.29
2372 2831 6.552008 TCACAAATCTCTCCCACCTAATTTT 58.448 36.000 0.00 0.00 0.00 1.82
2373 2832 6.139679 TCACAAATCTCTCCCACCTAATTT 57.860 37.500 0.00 0.00 0.00 1.82
2374 2833 5.779241 TCACAAATCTCTCCCACCTAATT 57.221 39.130 0.00 0.00 0.00 1.40
2375 2834 5.983333 ATCACAAATCTCTCCCACCTAAT 57.017 39.130 0.00 0.00 0.00 1.73
2376 2835 5.500234 CAATCACAAATCTCTCCCACCTAA 58.500 41.667 0.00 0.00 0.00 2.69
2377 2836 4.080356 CCAATCACAAATCTCTCCCACCTA 60.080 45.833 0.00 0.00 0.00 3.08
2378 2837 3.308688 CCAATCACAAATCTCTCCCACCT 60.309 47.826 0.00 0.00 0.00 4.00
2379 2838 3.019564 CCAATCACAAATCTCTCCCACC 58.980 50.000 0.00 0.00 0.00 4.61
2380 2839 3.690460 ACCAATCACAAATCTCTCCCAC 58.310 45.455 0.00 0.00 0.00 4.61
2381 2840 4.081406 CAACCAATCACAAATCTCTCCCA 58.919 43.478 0.00 0.00 0.00 4.37
2382 2841 4.082125 ACAACCAATCACAAATCTCTCCC 58.918 43.478 0.00 0.00 0.00 4.30
2383 2842 5.712152 AACAACCAATCACAAATCTCTCC 57.288 39.130 0.00 0.00 0.00 3.71
2384 2843 7.672983 TCTAACAACCAATCACAAATCTCTC 57.327 36.000 0.00 0.00 0.00 3.20
2385 2844 7.121759 CCATCTAACAACCAATCACAAATCTCT 59.878 37.037 0.00 0.00 0.00 3.10
2386 2845 7.121168 TCCATCTAACAACCAATCACAAATCTC 59.879 37.037 0.00 0.00 0.00 2.75
2387 2846 6.947733 TCCATCTAACAACCAATCACAAATCT 59.052 34.615 0.00 0.00 0.00 2.40
2388 2847 7.156876 TCCATCTAACAACCAATCACAAATC 57.843 36.000 0.00 0.00 0.00 2.17
2389 2848 7.378181 GTTCCATCTAACAACCAATCACAAAT 58.622 34.615 0.00 0.00 0.00 2.32
2390 2849 6.514212 CGTTCCATCTAACAACCAATCACAAA 60.514 38.462 0.00 0.00 0.00 2.83
2391 2850 5.049060 CGTTCCATCTAACAACCAATCACAA 60.049 40.000 0.00 0.00 0.00 3.33
2392 2851 4.454161 CGTTCCATCTAACAACCAATCACA 59.546 41.667 0.00 0.00 0.00 3.58
2393 2852 4.693566 TCGTTCCATCTAACAACCAATCAC 59.306 41.667 0.00 0.00 0.00 3.06
2394 2853 4.900684 TCGTTCCATCTAACAACCAATCA 58.099 39.130 0.00 0.00 0.00 2.57
2395 2854 4.201822 GCTCGTTCCATCTAACAACCAATC 60.202 45.833 0.00 0.00 0.00 2.67
2396 2855 3.689649 GCTCGTTCCATCTAACAACCAAT 59.310 43.478 0.00 0.00 0.00 3.16
2397 2856 3.071479 GCTCGTTCCATCTAACAACCAA 58.929 45.455 0.00 0.00 0.00 3.67
2398 2857 2.695359 GCTCGTTCCATCTAACAACCA 58.305 47.619 0.00 0.00 0.00 3.67
2399 2858 1.659098 CGCTCGTTCCATCTAACAACC 59.341 52.381 0.00 0.00 0.00 3.77
2400 2859 2.092211 CACGCTCGTTCCATCTAACAAC 59.908 50.000 0.00 0.00 0.00 3.32
2401 2860 2.288579 ACACGCTCGTTCCATCTAACAA 60.289 45.455 0.00 0.00 0.00 2.83
2402 2861 1.271379 ACACGCTCGTTCCATCTAACA 59.729 47.619 0.00 0.00 0.00 2.41
2403 2862 1.992170 ACACGCTCGTTCCATCTAAC 58.008 50.000 0.00 0.00 0.00 2.34
2404 2863 3.853831 TTACACGCTCGTTCCATCTAA 57.146 42.857 0.00 0.00 0.00 2.10
2405 2864 3.853831 TTTACACGCTCGTTCCATCTA 57.146 42.857 0.00 0.00 0.00 1.98
2406 2865 2.736144 TTTACACGCTCGTTCCATCT 57.264 45.000 0.00 0.00 0.00 2.90
2407 2866 2.474032 GCTTTTACACGCTCGTTCCATC 60.474 50.000 0.00 0.00 0.00 3.51
2408 2867 1.463444 GCTTTTACACGCTCGTTCCAT 59.537 47.619 0.00 0.00 0.00 3.41
2409 2868 0.863144 GCTTTTACACGCTCGTTCCA 59.137 50.000 0.00 0.00 0.00 3.53
2410 2869 0.179258 CGCTTTTACACGCTCGTTCC 60.179 55.000 0.00 0.00 0.00 3.62
2411 2870 0.505655 ACGCTTTTACACGCTCGTTC 59.494 50.000 0.00 0.00 0.00 3.95
2412 2871 0.231279 CACGCTTTTACACGCTCGTT 59.769 50.000 0.00 0.00 0.00 3.85
2413 2872 0.872881 ACACGCTTTTACACGCTCGT 60.873 50.000 0.00 0.00 0.00 4.18
2414 2873 1.054574 TACACGCTTTTACACGCTCG 58.945 50.000 0.00 0.00 0.00 5.03
2415 2874 2.473984 ACTTACACGCTTTTACACGCTC 59.526 45.455 0.00 0.00 0.00 5.03
2416 2875 2.473984 GACTTACACGCTTTTACACGCT 59.526 45.455 0.00 0.00 0.00 5.07
2417 2876 2.473984 AGACTTACACGCTTTTACACGC 59.526 45.455 0.00 0.00 0.00 5.34
2418 2877 4.703899 AAGACTTACACGCTTTTACACG 57.296 40.909 0.00 0.00 0.00 4.49
2419 2878 5.803118 ACAAAGACTTACACGCTTTTACAC 58.197 37.500 0.00 0.00 30.00 2.90
2420 2879 7.225145 ACATACAAAGACTTACACGCTTTTACA 59.775 33.333 0.00 0.00 30.00 2.41
2421 2880 7.570161 ACATACAAAGACTTACACGCTTTTAC 58.430 34.615 0.00 0.00 30.00 2.01
2422 2881 7.654520 AGACATACAAAGACTTACACGCTTTTA 59.345 33.333 0.00 0.00 30.00 1.52
2423 2882 6.482308 AGACATACAAAGACTTACACGCTTTT 59.518 34.615 0.00 0.00 30.00 2.27
2424 2883 5.989777 AGACATACAAAGACTTACACGCTTT 59.010 36.000 0.00 0.00 32.46 3.51
2425 2884 5.539048 AGACATACAAAGACTTACACGCTT 58.461 37.500 0.00 0.00 0.00 4.68
2426 2885 5.135508 AGACATACAAAGACTTACACGCT 57.864 39.130 0.00 0.00 0.00 5.07
2427 2886 5.004535 GCTAGACATACAAAGACTTACACGC 59.995 44.000 0.00 0.00 0.00 5.34
2428 2887 6.090783 TGCTAGACATACAAAGACTTACACG 58.909 40.000 0.00 0.00 0.00 4.49
2429 2888 8.480643 AATGCTAGACATACAAAGACTTACAC 57.519 34.615 0.00 0.00 38.34 2.90
2430 2889 9.502091 AAAATGCTAGACATACAAAGACTTACA 57.498 29.630 0.00 0.00 38.34 2.41
2433 2892 7.809806 GCAAAAATGCTAGACATACAAAGACTT 59.190 33.333 0.00 0.00 38.34 3.01
2434 2893 7.040478 TGCAAAAATGCTAGACATACAAAGACT 60.040 33.333 0.00 0.00 38.34 3.24
2435 2894 7.083858 TGCAAAAATGCTAGACATACAAAGAC 58.916 34.615 0.00 0.00 38.34 3.01
2436 2895 7.174772 TCTGCAAAAATGCTAGACATACAAAGA 59.825 33.333 0.00 0.00 38.34 2.52
2437 2896 7.307694 TCTGCAAAAATGCTAGACATACAAAG 58.692 34.615 0.00 0.00 38.34 2.77
2438 2897 7.213216 TCTGCAAAAATGCTAGACATACAAA 57.787 32.000 0.00 0.00 38.34 2.83
2439 2898 6.816134 TCTGCAAAAATGCTAGACATACAA 57.184 33.333 0.00 0.00 38.34 2.41
2440 2899 6.816134 TTCTGCAAAAATGCTAGACATACA 57.184 33.333 0.00 0.00 38.34 2.29
2441 2900 9.443283 CTTATTCTGCAAAAATGCTAGACATAC 57.557 33.333 0.00 0.00 38.34 2.39
2442 2901 9.394767 TCTTATTCTGCAAAAATGCTAGACATA 57.605 29.630 0.00 3.32 38.34 2.29
2443 2902 8.284945 TCTTATTCTGCAAAAATGCTAGACAT 57.715 30.769 0.00 0.00 42.30 3.06
2444 2903 7.627088 GCTCTTATTCTGCAAAAATGCTAGACA 60.627 37.037 0.00 0.00 35.49 3.41
2445 2904 6.690528 GCTCTTATTCTGCAAAAATGCTAGAC 59.309 38.462 0.00 0.00 35.49 2.59
2446 2905 6.183360 GGCTCTTATTCTGCAAAAATGCTAGA 60.183 38.462 0.00 1.43 35.49 2.43
2447 2906 5.975939 GGCTCTTATTCTGCAAAAATGCTAG 59.024 40.000 2.22 0.00 35.49 3.42
2448 2907 5.449041 CGGCTCTTATTCTGCAAAAATGCTA 60.449 40.000 2.22 0.00 35.49 3.49
2449 2908 4.676196 CGGCTCTTATTCTGCAAAAATGCT 60.676 41.667 2.22 0.00 35.49 3.79
2450 2909 3.549070 CGGCTCTTATTCTGCAAAAATGC 59.451 43.478 4.62 0.00 0.00 3.56
2451 2910 4.737054 ACGGCTCTTATTCTGCAAAAATG 58.263 39.130 4.62 0.00 0.00 2.32
2452 2911 5.391312 AACGGCTCTTATTCTGCAAAAAT 57.609 34.783 0.00 0.00 0.00 1.82
2453 2912 4.846779 AACGGCTCTTATTCTGCAAAAA 57.153 36.364 0.00 0.00 0.00 1.94
2454 2913 4.545610 CAAACGGCTCTTATTCTGCAAAA 58.454 39.130 0.00 0.00 0.00 2.44
2455 2914 3.057596 CCAAACGGCTCTTATTCTGCAAA 60.058 43.478 0.00 0.00 0.00 3.68
2456 2915 2.487762 CCAAACGGCTCTTATTCTGCAA 59.512 45.455 0.00 0.00 0.00 4.08
2457 2916 2.083774 CCAAACGGCTCTTATTCTGCA 58.916 47.619 0.00 0.00 0.00 4.41
2494 2955 4.263506 CCTGGAGTTGGAAGGTTACTCAAT 60.264 45.833 0.00 0.00 39.98 2.57
2495 2956 3.072476 CCTGGAGTTGGAAGGTTACTCAA 59.928 47.826 0.00 0.00 39.98 3.02
2496 2957 2.637872 CCTGGAGTTGGAAGGTTACTCA 59.362 50.000 0.00 0.00 39.98 3.41
2497 2958 2.027100 CCCTGGAGTTGGAAGGTTACTC 60.027 54.545 0.00 0.00 38.02 2.59
2498 2959 1.985895 CCCTGGAGTTGGAAGGTTACT 59.014 52.381 0.00 0.00 0.00 2.24
2510 2986 4.384208 GCATGTATCTTACAACCCTGGAGT 60.384 45.833 0.00 0.00 42.76 3.85
2530 3006 6.015095 TCGGAGATACTTACATGATGAAGCAT 60.015 38.462 0.00 0.00 0.00 3.79
2548 3024 1.273327 TGCATGCATACGATCGGAGAT 59.727 47.619 18.46 6.83 45.12 2.75
2549 3025 0.673437 TGCATGCATACGATCGGAGA 59.327 50.000 18.46 4.47 45.75 3.71
2596 3235 3.250040 ACACGAGTGTTGCATAAAAGACC 59.750 43.478 2.62 0.00 41.83 3.85
2614 3253 2.661504 TTTGTCGCAAATCTCACACG 57.338 45.000 1.63 0.00 0.00 4.49
2616 3255 3.376859 ACAGTTTTGTCGCAAATCTCACA 59.623 39.130 10.80 0.00 29.46 3.58
2685 3330 0.391597 AACCAAAGAGTCGCCTCGAA 59.608 50.000 0.00 0.00 42.86 3.71
2687 3332 2.074547 TAAACCAAAGAGTCGCCTCG 57.925 50.000 0.00 0.00 42.86 4.63
2689 3334 5.784578 AAAATTAAACCAAAGAGTCGCCT 57.215 34.783 0.00 0.00 0.00 5.52
2692 3337 8.718734 AGCTAGTAAAATTAAACCAAAGAGTCG 58.281 33.333 0.00 0.00 0.00 4.18
2739 4090 8.967664 TGAACCACTAAAATATGTATACACCC 57.032 34.615 7.96 0.00 0.00 4.61
2771 4122 7.119262 GTGTGTAAGGTATCTGTAGCACAAAAT 59.881 37.037 0.00 0.00 37.36 1.82
2778 4129 4.081862 TGGTGTGTGTAAGGTATCTGTAGC 60.082 45.833 0.00 0.00 0.00 3.58
2784 4164 9.826574 TTTAGAATATGGTGTGTGTAAGGTATC 57.173 33.333 0.00 0.00 0.00 2.24
2823 4203 6.725834 CCCTGCCCATACCTAAATGAAATTAT 59.274 38.462 0.00 0.00 33.67 1.28
2870 4846 3.600388 CTCACCTCCTTGCTCGTATTTT 58.400 45.455 0.00 0.00 0.00 1.82
2874 4850 1.605058 GCCTCACCTCCTTGCTCGTA 61.605 60.000 0.00 0.00 0.00 3.43
2894 4870 1.679977 CGTCTCCTCCCACCGGTTA 60.680 63.158 2.97 0.00 0.00 2.85
2946 4951 0.464870 TTGGGGAGTTCGTTTCGTCA 59.535 50.000 0.00 0.00 0.00 4.35
2993 5000 2.426738 TGATTCATAAAAGGGGCTTGCG 59.573 45.455 0.00 0.00 0.00 4.85
3040 5047 8.524487 CGAGACCTATTGGCTATTTCTAGTATT 58.476 37.037 0.00 0.00 36.63 1.89
3059 5066 2.696526 TTATATGGGAGCCGAGACCT 57.303 50.000 0.00 0.00 0.00 3.85
3068 5075 3.057969 TCAGGCGCAATTATATGGGAG 57.942 47.619 10.83 0.00 35.42 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.