Multiple sequence alignment - TraesCS6B01G063200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G063200 chr6B 100.000 3201 0 0 1 3201 41984608 41987808 0.000000e+00 5912.0
1 TraesCS6B01G063200 chr6B 97.940 534 11 0 1 534 156681566 156681033 0.000000e+00 926.0
2 TraesCS6B01G063200 chr6B 99.038 416 4 0 527 942 156667580 156667165 0.000000e+00 747.0
3 TraesCS6B01G063200 chr6B 83.333 120 20 0 1981 2100 317546796 317546915 9.390000e-21 111.0
4 TraesCS6B01G063200 chr3A 99.682 942 3 0 1 942 264769169 264768228 0.000000e+00 1724.0
5 TraesCS6B01G063200 chr3A 88.435 147 14 2 2683 2828 64810035 64809891 1.180000e-39 174.0
6 TraesCS6B01G063200 chr3A 88.889 117 11 1 3007 3123 64991315 64991429 3.330000e-30 143.0
7 TraesCS6B01G063200 chr4A 98.514 942 14 0 1 942 24508844 24509785 0.000000e+00 1663.0
8 TraesCS6B01G063200 chr7B 90.562 943 87 2 1 942 692184107 692185048 0.000000e+00 1247.0
9 TraesCS6B01G063200 chr7B 85.684 943 133 2 1 942 706779999 706779058 0.000000e+00 992.0
10 TraesCS6B01G063200 chr7B 86.364 396 54 0 1 396 52590061 52590456 1.760000e-117 433.0
11 TraesCS6B01G063200 chr7B 95.652 69 1 2 439 506 52590522 52590455 3.380000e-20 110.0
12 TraesCS6B01G063200 chr7B 77.037 135 29 2 2682 2815 739951998 739952131 3.420000e-10 76.8
13 TraesCS6B01G063200 chr7B 100.000 29 0 0 2351 2379 578960154 578960182 2.000000e-03 54.7
14 TraesCS6B01G063200 chr3B 85.896 943 131 2 1 942 182353645 182352704 0.000000e+00 1003.0
15 TraesCS6B01G063200 chr3B 87.417 604 41 20 1976 2559 586145349 586145937 0.000000e+00 662.0
16 TraesCS6B01G063200 chr3B 96.893 354 10 1 2588 2940 586145921 586146274 2.750000e-165 592.0
17 TraesCS6B01G063200 chr3B 93.333 240 8 6 2969 3201 586146269 586146507 6.570000e-92 348.0
18 TraesCS6B01G063200 chr3B 89.744 156 14 1 2969 3124 84433210 84433363 7.000000e-47 198.0
19 TraesCS6B01G063200 chr3B 93.333 75 5 0 1196 1270 754617131 754617205 9.390000e-21 111.0
20 TraesCS6B01G063200 chr1B 87.776 769 94 0 1 769 584497905 584498673 0.000000e+00 900.0
21 TraesCS6B01G063200 chr1B 99.052 422 4 0 1 422 493725330 493724909 0.000000e+00 758.0
22 TraesCS6B01G063200 chr5A 95.862 435 11 3 2514 2943 626092735 626092303 0.000000e+00 697.0
23 TraesCS6B01G063200 chr5A 90.133 375 19 3 1982 2339 626106230 626105857 3.740000e-129 472.0
24 TraesCS6B01G063200 chr5A 93.970 199 8 3 2324 2522 626098310 626098116 6.710000e-77 298.0
25 TraesCS6B01G063200 chr5A 91.038 212 7 4 2969 3169 626092312 626092102 3.150000e-70 276.0
26 TraesCS6B01G063200 chr5A 89.302 215 20 2 1976 2190 573664924 573665135 1.890000e-67 267.0
27 TraesCS6B01G063200 chr5A 94.444 36 0 2 2351 2386 120306103 120306070 2.000000e-03 54.7
28 TraesCS6B01G063200 chr1A 81.763 828 131 15 17 837 517323870 517324684 0.000000e+00 675.0
29 TraesCS6B01G063200 chr6A 81.761 636 73 20 1280 1885 23882988 23882366 2.870000e-135 492.0
30 TraesCS6B01G063200 chr1D 93.333 255 10 3 2536 2790 114661489 114661736 1.400000e-98 370.0
31 TraesCS6B01G063200 chr1D 90.706 269 24 1 1990 2257 114660878 114661146 1.090000e-94 357.0
32 TraesCS6B01G063200 chr1D 96.732 153 5 0 2969 3121 114661850 114662002 4.100000e-64 255.0
33 TraesCS6B01G063200 chr1D 97.619 126 2 1 2819 2943 114661734 114661859 6.950000e-52 215.0
34 TraesCS6B01G063200 chr1D 95.370 108 4 1 2320 2427 114661338 114661444 1.530000e-38 171.0
35 TraesCS6B01G063200 chr5B 81.013 395 68 7 549 939 678869915 678869524 1.120000e-79 307.0
36 TraesCS6B01G063200 chr6D 88.341 223 26 0 1754 1976 25767547 25767769 5.260000e-68 268.0
37 TraesCS6B01G063200 chr3D 86.192 239 30 2 1979 2217 978218 977983 4.100000e-64 255.0
38 TraesCS6B01G063200 chr3D 87.705 122 13 1 3003 3124 53612386 53612505 1.200000e-29 141.0
39 TraesCS6B01G063200 chr3D 82.203 118 21 0 1153 1270 566058102 566058219 5.650000e-18 102.0
40 TraesCS6B01G063200 chr4D 80.000 160 28 4 1982 2140 309296202 309296046 7.260000e-22 115.0
41 TraesCS6B01G063200 chr7A 100.000 29 0 0 2351 2379 220979943 220979971 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G063200 chr6B 41984608 41987808 3200 False 5912.0 5912 100.000000 1 3201 1 chr6B.!!$F1 3200
1 TraesCS6B01G063200 chr6B 156681033 156681566 533 True 926.0 926 97.940000 1 534 1 chr6B.!!$R2 533
2 TraesCS6B01G063200 chr3A 264768228 264769169 941 True 1724.0 1724 99.682000 1 942 1 chr3A.!!$R2 941
3 TraesCS6B01G063200 chr4A 24508844 24509785 941 False 1663.0 1663 98.514000 1 942 1 chr4A.!!$F1 941
4 TraesCS6B01G063200 chr7B 692184107 692185048 941 False 1247.0 1247 90.562000 1 942 1 chr7B.!!$F3 941
5 TraesCS6B01G063200 chr7B 706779058 706779999 941 True 992.0 992 85.684000 1 942 1 chr7B.!!$R2 941
6 TraesCS6B01G063200 chr3B 182352704 182353645 941 True 1003.0 1003 85.896000 1 942 1 chr3B.!!$R1 941
7 TraesCS6B01G063200 chr3B 586145349 586146507 1158 False 534.0 662 92.547667 1976 3201 3 chr3B.!!$F3 1225
8 TraesCS6B01G063200 chr1B 584497905 584498673 768 False 900.0 900 87.776000 1 769 1 chr1B.!!$F1 768
9 TraesCS6B01G063200 chr5A 626092102 626092735 633 True 486.5 697 93.450000 2514 3169 2 chr5A.!!$R4 655
10 TraesCS6B01G063200 chr1A 517323870 517324684 814 False 675.0 675 81.763000 17 837 1 chr1A.!!$F1 820
11 TraesCS6B01G063200 chr6A 23882366 23882988 622 True 492.0 492 81.761000 1280 1885 1 chr6A.!!$R1 605
12 TraesCS6B01G063200 chr1D 114660878 114662002 1124 False 273.6 370 94.752000 1990 3121 5 chr1D.!!$F1 1131

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
976 980 0.179001 ACCCAAAGCCACACCTACAC 60.179 55.0 0.0 0.0 0.00 2.90 F
1041 1045 0.033109 AAATGGACTAAGCCCAGCCC 60.033 55.0 0.0 0.0 37.08 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1958 1991 0.036010 CCTTCACGCTGGACCTTGAT 60.036 55.0 0.0 0.0 0.0 2.57 R
2956 3137 0.179127 TCTTGCTCTTGATCTCGCCG 60.179 55.0 0.0 0.0 0.0 6.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
942 946 5.872617 TGATACACCGAGTAACCAAGAATTG 59.127 40.000 0.00 0.00 40.30 2.32
943 947 4.081322 ACACCGAGTAACCAAGAATTGT 57.919 40.909 0.00 0.00 46.99 2.71
944 948 4.457466 ACACCGAGTAACCAAGAATTGTT 58.543 39.130 0.00 0.00 46.99 2.83
945 949 4.885325 ACACCGAGTAACCAAGAATTGTTT 59.115 37.500 0.00 0.00 46.99 2.83
946 950 5.358725 ACACCGAGTAACCAAGAATTGTTTT 59.641 36.000 0.00 0.00 46.99 2.43
947 951 6.127563 ACACCGAGTAACCAAGAATTGTTTTT 60.128 34.615 0.00 0.00 46.99 1.94
966 970 1.989706 TTTGAGTGGTACCCAAAGCC 58.010 50.000 10.07 0.00 34.18 4.35
967 971 0.847373 TTGAGTGGTACCCAAAGCCA 59.153 50.000 10.07 0.00 34.18 4.75
970 974 4.911901 TGGTACCCAAAGCCACAC 57.088 55.556 10.07 0.00 0.00 3.82
971 975 1.151908 TGGTACCCAAAGCCACACC 59.848 57.895 10.07 0.00 0.00 4.16
972 976 1.357272 TGGTACCCAAAGCCACACCT 61.357 55.000 10.07 0.00 0.00 4.00
973 977 0.694196 GGTACCCAAAGCCACACCTA 59.306 55.000 0.00 0.00 0.00 3.08
974 978 1.612462 GGTACCCAAAGCCACACCTAC 60.612 57.143 0.00 0.00 0.00 3.18
975 979 1.072648 GTACCCAAAGCCACACCTACA 59.927 52.381 0.00 0.00 0.00 2.74
976 980 0.179001 ACCCAAAGCCACACCTACAC 60.179 55.000 0.00 0.00 0.00 2.90
977 981 0.179004 CCCAAAGCCACACCTACACA 60.179 55.000 0.00 0.00 0.00 3.72
978 982 1.238439 CCAAAGCCACACCTACACAG 58.762 55.000 0.00 0.00 0.00 3.66
979 983 1.202758 CCAAAGCCACACCTACACAGA 60.203 52.381 0.00 0.00 0.00 3.41
980 984 2.571212 CAAAGCCACACCTACACAGAA 58.429 47.619 0.00 0.00 0.00 3.02
981 985 2.948979 CAAAGCCACACCTACACAGAAA 59.051 45.455 0.00 0.00 0.00 2.52
982 986 3.508845 AAGCCACACCTACACAGAAAT 57.491 42.857 0.00 0.00 0.00 2.17
983 987 4.634012 AAGCCACACCTACACAGAAATA 57.366 40.909 0.00 0.00 0.00 1.40
984 988 4.207891 AGCCACACCTACACAGAAATAG 57.792 45.455 0.00 0.00 0.00 1.73
985 989 3.838317 AGCCACACCTACACAGAAATAGA 59.162 43.478 0.00 0.00 0.00 1.98
986 990 4.081420 AGCCACACCTACACAGAAATAGAG 60.081 45.833 0.00 0.00 0.00 2.43
987 991 4.759782 CCACACCTACACAGAAATAGAGG 58.240 47.826 0.00 0.00 0.00 3.69
988 992 4.184629 CACACCTACACAGAAATAGAGGC 58.815 47.826 0.00 0.00 0.00 4.70
989 993 3.119101 ACACCTACACAGAAATAGAGGCG 60.119 47.826 0.00 0.00 0.00 5.52
990 994 3.130516 CACCTACACAGAAATAGAGGCGA 59.869 47.826 0.00 0.00 0.00 5.54
991 995 3.381908 ACCTACACAGAAATAGAGGCGAG 59.618 47.826 0.00 0.00 0.00 5.03
992 996 2.301577 ACACAGAAATAGAGGCGAGC 57.698 50.000 0.00 0.00 0.00 5.03
993 997 1.134670 ACACAGAAATAGAGGCGAGCC 60.135 52.381 5.89 5.89 0.00 4.70
994 998 0.466124 ACAGAAATAGAGGCGAGCCC 59.534 55.000 10.95 2.51 36.58 5.19
995 999 0.465705 CAGAAATAGAGGCGAGCCCA 59.534 55.000 10.95 0.00 36.58 5.36
996 1000 0.755686 AGAAATAGAGGCGAGCCCAG 59.244 55.000 10.95 0.00 36.58 4.45
997 1001 0.882484 GAAATAGAGGCGAGCCCAGC 60.882 60.000 10.95 0.79 36.58 4.85
1004 1008 4.770874 GCGAGCCCAGCCCGTTTA 62.771 66.667 0.00 0.00 0.00 2.01
1005 1009 2.046700 CGAGCCCAGCCCGTTTAA 60.047 61.111 0.00 0.00 0.00 1.52
1006 1010 2.106683 CGAGCCCAGCCCGTTTAAG 61.107 63.158 0.00 0.00 0.00 1.85
1007 1011 1.002502 GAGCCCAGCCCGTTTAAGT 60.003 57.895 0.00 0.00 0.00 2.24
1008 1012 1.002502 AGCCCAGCCCGTTTAAGTC 60.003 57.895 0.00 0.00 0.00 3.01
1009 1013 1.002502 GCCCAGCCCGTTTAAGTCT 60.003 57.895 0.00 0.00 0.00 3.24
1010 1014 0.608308 GCCCAGCCCGTTTAAGTCTT 60.608 55.000 0.00 0.00 0.00 3.01
1011 1015 1.450025 CCCAGCCCGTTTAAGTCTTC 58.550 55.000 0.00 0.00 0.00 2.87
1012 1016 1.076332 CCAGCCCGTTTAAGTCTTCG 58.924 55.000 0.00 0.00 0.00 3.79
1013 1017 1.337447 CCAGCCCGTTTAAGTCTTCGA 60.337 52.381 0.00 0.00 0.00 3.71
1014 1018 2.618053 CAGCCCGTTTAAGTCTTCGAT 58.382 47.619 0.00 0.00 0.00 3.59
1015 1019 2.603560 CAGCCCGTTTAAGTCTTCGATC 59.396 50.000 0.00 0.00 0.00 3.69
1016 1020 2.496470 AGCCCGTTTAAGTCTTCGATCT 59.504 45.455 0.00 0.00 0.00 2.75
1017 1021 2.603560 GCCCGTTTAAGTCTTCGATCTG 59.396 50.000 0.00 0.00 0.00 2.90
1018 1022 3.846360 CCCGTTTAAGTCTTCGATCTGT 58.154 45.455 0.00 0.00 0.00 3.41
1019 1023 4.243270 CCCGTTTAAGTCTTCGATCTGTT 58.757 43.478 0.00 0.00 0.00 3.16
1020 1024 4.326548 CCCGTTTAAGTCTTCGATCTGTTC 59.673 45.833 0.00 0.00 0.00 3.18
1034 1038 5.396750 GATCTGTTCGAAATGGACTAAGC 57.603 43.478 0.00 0.00 0.00 3.09
1035 1039 3.596214 TCTGTTCGAAATGGACTAAGCC 58.404 45.455 0.00 0.00 0.00 4.35
1036 1040 2.678336 CTGTTCGAAATGGACTAAGCCC 59.322 50.000 0.00 0.00 0.00 5.19
1037 1041 2.039216 TGTTCGAAATGGACTAAGCCCA 59.961 45.455 0.00 0.00 38.19 5.36
1038 1042 2.678336 GTTCGAAATGGACTAAGCCCAG 59.322 50.000 0.00 0.00 37.08 4.45
1039 1043 1.017387 CGAAATGGACTAAGCCCAGC 58.983 55.000 0.00 0.00 37.08 4.85
1040 1044 1.393603 GAAATGGACTAAGCCCAGCC 58.606 55.000 0.00 0.00 37.08 4.85
1041 1045 0.033109 AAATGGACTAAGCCCAGCCC 60.033 55.000 0.00 0.00 37.08 5.19
1042 1046 1.214305 AATGGACTAAGCCCAGCCCA 61.214 55.000 0.00 0.00 37.08 5.36
1043 1047 1.214305 ATGGACTAAGCCCAGCCCAA 61.214 55.000 0.00 0.00 37.08 4.12
1044 1048 1.382629 GGACTAAGCCCAGCCCAAA 59.617 57.895 0.00 0.00 0.00 3.28
1045 1049 0.033109 GGACTAAGCCCAGCCCAAAT 60.033 55.000 0.00 0.00 0.00 2.32
1046 1050 1.106285 GACTAAGCCCAGCCCAAATG 58.894 55.000 0.00 0.00 0.00 2.32
1047 1051 0.972471 ACTAAGCCCAGCCCAAATGC 60.972 55.000 0.00 0.00 0.00 3.56
1048 1052 2.008268 CTAAGCCCAGCCCAAATGCG 62.008 60.000 0.00 0.00 36.02 4.73
1049 1053 2.779742 TAAGCCCAGCCCAAATGCGT 62.780 55.000 0.00 0.00 36.02 5.24
1050 1054 3.694538 GCCCAGCCCAAATGCGTT 61.695 61.111 0.00 0.00 36.02 4.84
1051 1055 2.573340 CCCAGCCCAAATGCGTTC 59.427 61.111 0.00 0.00 36.02 3.95
1052 1056 2.573340 CCAGCCCAAATGCGTTCC 59.427 61.111 0.00 0.00 36.02 3.62
1053 1057 1.978617 CCAGCCCAAATGCGTTCCT 60.979 57.895 0.00 0.00 36.02 3.36
1054 1058 0.679640 CCAGCCCAAATGCGTTCCTA 60.680 55.000 0.00 0.00 36.02 2.94
1055 1059 1.392589 CAGCCCAAATGCGTTCCTAT 58.607 50.000 0.00 0.00 36.02 2.57
1056 1060 1.750778 CAGCCCAAATGCGTTCCTATT 59.249 47.619 0.00 0.00 36.02 1.73
1057 1061 1.750778 AGCCCAAATGCGTTCCTATTG 59.249 47.619 0.00 0.00 36.02 1.90
1058 1062 1.476488 GCCCAAATGCGTTCCTATTGT 59.524 47.619 0.00 0.00 0.00 2.71
1059 1063 2.094234 GCCCAAATGCGTTCCTATTGTT 60.094 45.455 0.00 0.00 0.00 2.83
1060 1064 3.769536 CCCAAATGCGTTCCTATTGTTC 58.230 45.455 0.00 0.00 0.00 3.18
1061 1065 3.428862 CCCAAATGCGTTCCTATTGTTCC 60.429 47.826 0.00 0.00 0.00 3.62
1062 1066 3.428862 CCAAATGCGTTCCTATTGTTCCC 60.429 47.826 0.00 0.00 0.00 3.97
1063 1067 3.366052 AATGCGTTCCTATTGTTCCCT 57.634 42.857 0.00 0.00 0.00 4.20
1064 1068 2.871096 TGCGTTCCTATTGTTCCCTT 57.129 45.000 0.00 0.00 0.00 3.95
1065 1069 2.706890 TGCGTTCCTATTGTTCCCTTC 58.293 47.619 0.00 0.00 0.00 3.46
1066 1070 2.014857 GCGTTCCTATTGTTCCCTTCC 58.985 52.381 0.00 0.00 0.00 3.46
1067 1071 2.277084 CGTTCCTATTGTTCCCTTCCG 58.723 52.381 0.00 0.00 0.00 4.30
1068 1072 2.014857 GTTCCTATTGTTCCCTTCCGC 58.985 52.381 0.00 0.00 0.00 5.54
1069 1073 0.177141 TCCTATTGTTCCCTTCCGCG 59.823 55.000 0.00 0.00 0.00 6.46
1070 1074 0.177141 CCTATTGTTCCCTTCCGCGA 59.823 55.000 8.23 0.00 0.00 5.87
1071 1075 1.571919 CTATTGTTCCCTTCCGCGAG 58.428 55.000 8.23 0.00 0.00 5.03
1072 1076 1.136305 CTATTGTTCCCTTCCGCGAGA 59.864 52.381 8.23 0.00 0.00 4.04
1073 1077 0.108138 ATTGTTCCCTTCCGCGAGAG 60.108 55.000 8.23 4.45 0.00 3.20
1074 1078 1.183030 TTGTTCCCTTCCGCGAGAGA 61.183 55.000 8.23 0.00 0.00 3.10
1075 1079 1.139947 GTTCCCTTCCGCGAGAGAG 59.860 63.158 8.23 0.00 0.00 3.20
1076 1080 2.711922 TTCCCTTCCGCGAGAGAGC 61.712 63.158 8.23 0.00 0.00 4.09
1077 1081 3.452786 CCCTTCCGCGAGAGAGCA 61.453 66.667 8.23 0.00 36.85 4.26
1078 1082 2.573869 CCTTCCGCGAGAGAGCAA 59.426 61.111 8.23 0.00 36.85 3.91
1079 1083 1.079819 CCTTCCGCGAGAGAGCAAA 60.080 57.895 8.23 0.00 36.85 3.68
1080 1084 0.670546 CCTTCCGCGAGAGAGCAAAA 60.671 55.000 8.23 0.00 36.85 2.44
1081 1085 0.440371 CTTCCGCGAGAGAGCAAAAC 59.560 55.000 8.23 0.00 36.85 2.43
1082 1086 0.949105 TTCCGCGAGAGAGCAAAACC 60.949 55.000 8.23 0.00 36.85 3.27
1083 1087 1.374758 CCGCGAGAGAGCAAAACCT 60.375 57.895 8.23 0.00 36.85 3.50
1084 1088 0.108804 CCGCGAGAGAGCAAAACCTA 60.109 55.000 8.23 0.00 36.85 3.08
1085 1089 0.992802 CGCGAGAGAGCAAAACCTAC 59.007 55.000 0.00 0.00 36.85 3.18
1086 1090 1.360820 GCGAGAGAGCAAAACCTACC 58.639 55.000 0.00 0.00 37.05 3.18
1087 1091 1.630148 CGAGAGAGCAAAACCTACCG 58.370 55.000 0.00 0.00 0.00 4.02
1088 1092 1.360820 GAGAGAGCAAAACCTACCGC 58.639 55.000 0.00 0.00 0.00 5.68
1089 1093 0.036294 AGAGAGCAAAACCTACCGCC 60.036 55.000 0.00 0.00 0.00 6.13
1090 1094 1.359459 GAGAGCAAAACCTACCGCCG 61.359 60.000 0.00 0.00 0.00 6.46
1091 1095 3.035576 GAGCAAAACCTACCGCCGC 62.036 63.158 0.00 0.00 0.00 6.53
1092 1096 4.111016 GCAAAACCTACCGCCGCC 62.111 66.667 0.00 0.00 0.00 6.13
1093 1097 3.795342 CAAAACCTACCGCCGCCG 61.795 66.667 0.00 0.00 0.00 6.46
1111 1115 4.778415 CCGTCACCTCACGCTCCG 62.778 72.222 0.00 0.00 38.52 4.63
1113 1117 4.057428 GTCACCTCACGCTCCGCT 62.057 66.667 0.00 0.00 0.00 5.52
1114 1118 3.749064 TCACCTCACGCTCCGCTC 61.749 66.667 0.00 0.00 0.00 5.03
1115 1119 4.803426 CACCTCACGCTCCGCTCC 62.803 72.222 0.00 0.00 0.00 4.70
1117 1121 4.504916 CCTCACGCTCCGCTCCTG 62.505 72.222 0.00 0.00 0.00 3.86
1118 1122 4.504916 CTCACGCTCCGCTCCTGG 62.505 72.222 0.00 0.00 0.00 4.45
1127 1131 4.271816 CGCTCCTGGGACGGATCG 62.272 72.222 0.00 0.00 36.31 3.69
1128 1132 2.833582 GCTCCTGGGACGGATCGA 60.834 66.667 0.00 0.00 36.31 3.59
1129 1133 2.851071 GCTCCTGGGACGGATCGAG 61.851 68.421 0.00 0.00 36.31 4.04
1130 1134 2.123854 TCCTGGGACGGATCGAGG 60.124 66.667 0.00 0.00 36.31 4.63
1131 1135 3.227276 CCTGGGACGGATCGAGGG 61.227 72.222 0.00 0.00 36.31 4.30
1132 1136 3.917760 CTGGGACGGATCGAGGGC 61.918 72.222 0.00 0.00 36.31 5.19
1133 1137 4.458829 TGGGACGGATCGAGGGCT 62.459 66.667 0.00 0.00 0.00 5.19
1134 1138 3.607661 GGGACGGATCGAGGGCTC 61.608 72.222 0.00 0.00 0.00 4.70
1135 1139 3.607661 GGACGGATCGAGGGCTCC 61.608 72.222 0.00 0.00 0.00 4.70
1136 1140 3.607661 GACGGATCGAGGGCTCCC 61.608 72.222 0.00 0.00 0.00 4.30
1137 1141 4.458829 ACGGATCGAGGGCTCCCA 62.459 66.667 7.82 0.00 38.92 4.37
1138 1142 3.610669 CGGATCGAGGGCTCCCAG 61.611 72.222 7.82 0.99 38.92 4.45
1139 1143 3.934962 GGATCGAGGGCTCCCAGC 61.935 72.222 7.82 0.00 41.46 4.85
1211 1215 2.835431 CGGCCTCCCAGACGAGAT 60.835 66.667 0.00 0.00 30.97 2.75
1212 1216 2.851071 CGGCCTCCCAGACGAGATC 61.851 68.421 0.00 0.00 30.97 2.75
1213 1217 1.758514 GGCCTCCCAGACGAGATCA 60.759 63.158 0.00 0.00 30.97 2.92
1214 1218 1.439644 GCCTCCCAGACGAGATCAC 59.560 63.158 0.00 0.00 30.97 3.06
1215 1219 2.022240 GCCTCCCAGACGAGATCACC 62.022 65.000 0.00 0.00 30.97 4.02
1216 1220 0.684479 CCTCCCAGACGAGATCACCA 60.684 60.000 0.00 0.00 30.97 4.17
1217 1221 0.457851 CTCCCAGACGAGATCACCAC 59.542 60.000 0.00 0.00 30.97 4.16
1218 1222 0.970937 TCCCAGACGAGATCACCACC 60.971 60.000 0.00 0.00 0.00 4.61
1219 1223 0.972983 CCCAGACGAGATCACCACCT 60.973 60.000 0.00 0.00 0.00 4.00
1220 1224 0.174389 CCAGACGAGATCACCACCTG 59.826 60.000 0.00 0.00 0.00 4.00
1221 1225 0.174389 CAGACGAGATCACCACCTGG 59.826 60.000 0.00 0.00 42.17 4.45
1222 1226 0.972983 AGACGAGATCACCACCTGGG 60.973 60.000 0.00 0.00 44.81 4.45
1223 1227 0.970937 GACGAGATCACCACCTGGGA 60.971 60.000 0.00 0.00 41.15 4.37
1224 1228 0.972983 ACGAGATCACCACCTGGGAG 60.973 60.000 0.00 0.00 41.15 4.30
1225 1229 0.684479 CGAGATCACCACCTGGGAGA 60.684 60.000 0.00 0.00 40.74 3.71
1228 1232 2.936823 ATCACCACCTGGGAGATCC 58.063 57.895 0.00 0.00 42.56 3.36
1229 1233 0.344790 ATCACCACCTGGGAGATCCT 59.655 55.000 0.00 0.00 42.56 3.24
1230 1234 0.325671 TCACCACCTGGGAGATCCTC 60.326 60.000 0.00 0.00 41.15 3.71
1231 1235 1.381872 ACCACCTGGGAGATCCTCG 60.382 63.158 0.00 0.00 41.15 4.63
1232 1236 1.381872 CCACCTGGGAGATCCTCGT 60.382 63.158 0.00 0.00 40.01 4.18
1233 1237 1.680522 CCACCTGGGAGATCCTCGTG 61.681 65.000 0.00 3.25 40.01 4.35
1234 1238 2.060980 ACCTGGGAGATCCTCGTGC 61.061 63.158 0.00 0.00 36.20 5.34
1235 1239 2.415010 CTGGGAGATCCTCGTGCG 59.585 66.667 0.00 0.00 36.20 5.34
1236 1240 3.781770 CTGGGAGATCCTCGTGCGC 62.782 68.421 0.00 0.00 36.20 6.09
1237 1241 4.593864 GGGAGATCCTCGTGCGCC 62.594 72.222 4.18 0.00 35.95 6.53
1238 1242 3.532155 GGAGATCCTCGTGCGCCT 61.532 66.667 4.18 0.00 0.00 5.52
1239 1243 2.279120 GAGATCCTCGTGCGCCTG 60.279 66.667 4.18 0.00 0.00 4.85
1240 1244 4.521062 AGATCCTCGTGCGCCTGC 62.521 66.667 4.18 0.00 43.20 4.85
1320 1324 3.742248 CTCCCTCCCCCTCCTCGAC 62.742 73.684 0.00 0.00 0.00 4.20
1345 1349 1.300233 GACCGCCATAGCCTCTTCG 60.300 63.158 0.00 0.00 34.57 3.79
1350 1354 0.882484 GCCATAGCCTCTTCGCCTTC 60.882 60.000 0.00 0.00 0.00 3.46
1353 1357 0.386113 ATAGCCTCTTCGCCTTCGAC 59.614 55.000 0.00 0.00 45.43 4.20
1356 1360 1.446272 CCTCTTCGCCTTCGACCAC 60.446 63.158 0.00 0.00 45.43 4.16
1389 1393 2.435059 GAGCAGCTCCAACCCGTC 60.435 66.667 11.84 0.00 0.00 4.79
1435 1451 3.069318 ACGGCCTCCTCGTCCTTC 61.069 66.667 0.00 0.00 35.87 3.46
1448 1464 1.197721 CGTCCTTCACAATCTTGGCAC 59.802 52.381 0.00 0.00 0.00 5.01
1450 1466 0.109597 CCTTCACAATCTTGGCACGC 60.110 55.000 0.00 0.00 0.00 5.34
1464 1480 2.760385 ACGCCTGGCCTCTCCTAC 60.760 66.667 14.12 0.00 35.26 3.18
1481 1497 0.539986 TACTCCATCTTCAACCCGGC 59.460 55.000 0.00 0.00 0.00 6.13
1500 1520 2.361357 ACTCGCCAGTACGCCTCT 60.361 61.111 0.00 0.00 0.00 3.69
1502 1522 2.045242 TCGCCAGTACGCCTCTCT 60.045 61.111 0.00 0.00 0.00 3.10
1511 1531 4.551388 CAGTACGCCTCTCTATGATTTCC 58.449 47.826 0.00 0.00 0.00 3.13
1517 1537 3.397482 CCTCTCTATGATTTCCGGCTTG 58.603 50.000 0.00 0.00 0.00 4.01
1531 1551 1.550072 CGGCTTGGAAATGTTGGGAAT 59.450 47.619 0.00 0.00 0.00 3.01
1536 1556 4.620567 GCTTGGAAATGTTGGGAATGTACC 60.621 45.833 0.00 0.00 0.00 3.34
1551 1571 2.355986 TACCAGCACCGCCCTACAG 61.356 63.158 0.00 0.00 0.00 2.74
1572 1592 2.117910 GCGAAGGCGAGTACAGAATAC 58.882 52.381 0.00 0.00 40.82 1.89
1592 1612 9.220767 AGAATACTGTACCTGAAAGATGAAAAC 57.779 33.333 0.00 0.00 34.07 2.43
1612 1632 4.394712 GGCACCCTGCTGCTACGT 62.395 66.667 0.00 0.00 44.28 3.57
1613 1633 2.358737 GCACCCTGCTGCTACGTT 60.359 61.111 0.00 0.00 40.96 3.99
1618 1638 0.517316 CCCTGCTGCTACGTTTTCAC 59.483 55.000 0.00 0.00 0.00 3.18
1657 1690 4.554036 GAGGCTCATCGGGGGCAC 62.554 72.222 10.25 0.00 0.00 5.01
1664 1697 1.889105 CATCGGGGGCACGAAGATG 60.889 63.158 7.58 5.94 46.92 2.90
1666 1699 4.096003 CGGGGGCACGAAGATGGT 62.096 66.667 0.00 0.00 35.47 3.55
1667 1700 2.355115 GGGGGCACGAAGATGGTT 59.645 61.111 0.00 0.00 0.00 3.67
1675 1708 3.125316 GGCACGAAGATGGTTTAACTGAG 59.875 47.826 0.00 0.00 0.00 3.35
1677 1710 3.125316 CACGAAGATGGTTTAACTGAGGC 59.875 47.826 0.00 0.00 0.00 4.70
1681 1714 0.679960 ATGGTTTAACTGAGGCGGCC 60.680 55.000 12.11 12.11 0.00 6.13
1719 1752 3.304721 GCATTGGCACCCACAGCA 61.305 61.111 0.00 0.00 40.72 4.41
1721 1754 1.290955 CATTGGCACCCACAGCAAG 59.709 57.895 0.00 0.00 30.78 4.01
1727 1760 1.310933 GCACCCACAGCAAGATGAGG 61.311 60.000 0.00 0.00 0.00 3.86
1730 1763 0.742281 CCCACAGCAAGATGAGGACG 60.742 60.000 3.33 0.00 33.17 4.79
1731 1764 1.364626 CCACAGCAAGATGAGGACGC 61.365 60.000 0.00 0.00 33.17 5.19
1735 1768 1.023513 AGCAAGATGAGGACGCAAGC 61.024 55.000 0.00 0.00 45.62 4.01
1746 1779 0.230769 GACGCAAGCGACATGATAGC 59.769 55.000 22.30 1.31 42.83 2.97
1776 1809 4.351938 CACGGCCGAGTCGTTCCA 62.352 66.667 35.90 0.00 42.79 3.53
1800 1833 4.143363 GCGTGCGCCGTTTACTCC 62.143 66.667 17.38 0.00 39.32 3.85
1848 1881 0.599728 GAGATGGATGGAGTGCTCGC 60.600 60.000 0.00 0.00 0.00 5.03
1850 1883 3.451556 ATGGATGGAGTGCTCGCCG 62.452 63.158 4.06 0.00 36.30 6.46
1862 1895 0.179145 GCTCGCCGTGTCTAGCTTTA 60.179 55.000 0.00 0.00 32.18 1.85
1866 1899 2.164827 TCGCCGTGTCTAGCTTTAATGA 59.835 45.455 0.00 0.00 0.00 2.57
1871 1904 3.796717 CGTGTCTAGCTTTAATGATGCGA 59.203 43.478 0.00 0.00 33.86 5.10
1879 1912 3.302480 GCTTTAATGATGCGACGTCGATT 60.302 43.478 39.74 29.22 43.02 3.34
1885 1918 2.787129 TGATGCGACGTCGATTATTGAC 59.213 45.455 39.74 20.07 43.02 3.18
1886 1919 2.265647 TGCGACGTCGATTATTGACA 57.734 45.000 39.74 22.41 43.02 3.58
1887 1920 2.804647 TGCGACGTCGATTATTGACAT 58.195 42.857 39.74 0.00 43.02 3.06
1888 1921 2.787129 TGCGACGTCGATTATTGACATC 59.213 45.455 39.74 18.13 43.02 3.06
1889 1922 2.153247 GCGACGTCGATTATTGACATCC 59.847 50.000 39.74 14.40 43.02 3.51
1890 1923 2.400735 CGACGTCGATTATTGACATCCG 59.599 50.000 33.35 0.00 43.02 4.18
1891 1924 2.724690 GACGTCGATTATTGACATCCGG 59.275 50.000 12.51 0.00 36.11 5.14
1892 1925 2.359848 ACGTCGATTATTGACATCCGGA 59.640 45.455 6.61 6.61 36.11 5.14
1893 1926 3.005472 ACGTCGATTATTGACATCCGGAT 59.995 43.478 12.38 12.38 36.11 4.18
1894 1927 3.364920 CGTCGATTATTGACATCCGGATG 59.635 47.826 37.23 37.23 44.15 3.51
1895 1928 3.123621 GTCGATTATTGACATCCGGATGC 59.876 47.826 38.44 30.28 42.39 3.91
1896 1929 3.006859 TCGATTATTGACATCCGGATGCT 59.993 43.478 38.44 26.88 42.39 3.79
1897 1930 3.124128 CGATTATTGACATCCGGATGCTG 59.876 47.826 38.44 21.91 42.39 4.41
1898 1931 1.882912 TATTGACATCCGGATGCTGC 58.117 50.000 38.44 28.29 42.39 5.25
1899 1932 0.107066 ATTGACATCCGGATGCTGCA 60.107 50.000 38.44 30.20 42.39 4.41
1900 1933 1.026182 TTGACATCCGGATGCTGCAC 61.026 55.000 38.44 24.91 42.39 4.57
1901 1934 2.512286 ACATCCGGATGCTGCACG 60.512 61.111 38.44 17.99 42.39 5.34
1905 1938 4.529219 CCGGATGCTGCACGGCTA 62.529 66.667 17.06 0.00 41.23 3.93
1906 1939 2.280389 CGGATGCTGCACGGCTAT 60.280 61.111 3.57 0.00 0.00 2.97
1907 1940 2.601398 CGGATGCTGCACGGCTATG 61.601 63.158 3.57 0.00 0.00 2.23
1908 1941 1.227645 GGATGCTGCACGGCTATGA 60.228 57.895 3.57 0.00 0.00 2.15
1909 1942 0.815213 GGATGCTGCACGGCTATGAA 60.815 55.000 3.57 0.00 0.00 2.57
1910 1943 1.016627 GATGCTGCACGGCTATGAAA 58.983 50.000 3.57 0.00 0.00 2.69
1911 1944 1.003116 GATGCTGCACGGCTATGAAAG 60.003 52.381 3.57 0.00 0.00 2.62
1936 1969 4.043037 GGTATGGACCTTCAAGTACTCG 57.957 50.000 0.00 0.00 43.16 4.18
1937 1970 3.181478 GGTATGGACCTTCAAGTACTCGG 60.181 52.174 0.00 0.00 43.16 4.63
1938 1971 2.005370 TGGACCTTCAAGTACTCGGT 57.995 50.000 0.00 0.57 0.00 4.69
1939 1972 2.322658 TGGACCTTCAAGTACTCGGTT 58.677 47.619 0.00 0.00 0.00 4.44
1940 1973 3.499338 TGGACCTTCAAGTACTCGGTTA 58.501 45.455 0.00 0.00 0.00 2.85
1941 1974 3.896888 TGGACCTTCAAGTACTCGGTTAA 59.103 43.478 0.00 0.00 0.00 2.01
1942 1975 4.344679 TGGACCTTCAAGTACTCGGTTAAA 59.655 41.667 0.00 0.00 0.00 1.52
1943 1976 5.012354 TGGACCTTCAAGTACTCGGTTAAAT 59.988 40.000 0.00 0.00 0.00 1.40
1944 1977 5.936372 GGACCTTCAAGTACTCGGTTAAATT 59.064 40.000 0.00 0.00 0.00 1.82
1945 1978 6.128363 GGACCTTCAAGTACTCGGTTAAATTG 60.128 42.308 0.00 0.00 0.00 2.32
1946 1979 5.180680 ACCTTCAAGTACTCGGTTAAATTGC 59.819 40.000 0.00 0.00 0.00 3.56
1947 1980 5.391629 CCTTCAAGTACTCGGTTAAATTGCC 60.392 44.000 0.00 0.00 0.00 4.52
1952 1985 3.279183 CGGTTAAATTGCCGGCCA 58.721 55.556 26.77 15.07 43.85 5.36
1953 1986 1.153920 CGGTTAAATTGCCGGCCAC 60.154 57.895 26.77 10.54 43.85 5.01
1954 1987 1.153920 GGTTAAATTGCCGGCCACG 60.154 57.895 26.77 0.00 40.55 4.94
1964 1997 2.819595 CGGCCACGGACATCAAGG 60.820 66.667 2.24 0.00 36.18 3.61
1965 1998 2.351276 GGCCACGGACATCAAGGT 59.649 61.111 0.00 0.00 0.00 3.50
1966 1999 1.745489 GGCCACGGACATCAAGGTC 60.745 63.158 0.00 0.00 37.06 3.85
1973 2006 2.460330 GACATCAAGGTCCAGCGTG 58.540 57.895 0.00 0.00 0.00 5.34
1974 2007 0.037326 GACATCAAGGTCCAGCGTGA 60.037 55.000 0.00 0.00 0.00 4.35
1975 2008 0.396435 ACATCAAGGTCCAGCGTGAA 59.604 50.000 0.00 0.00 0.00 3.18
1976 2009 1.081892 CATCAAGGTCCAGCGTGAAG 58.918 55.000 0.00 0.00 0.00 3.02
1977 2010 0.036010 ATCAAGGTCCAGCGTGAAGG 60.036 55.000 0.00 0.00 0.00 3.46
1978 2011 1.118965 TCAAGGTCCAGCGTGAAGGA 61.119 55.000 0.00 0.00 0.00 3.36
1979 2012 0.250295 CAAGGTCCAGCGTGAAGGAA 60.250 55.000 0.00 0.00 35.29 3.36
1980 2013 0.472471 AAGGTCCAGCGTGAAGGAAA 59.528 50.000 0.00 0.00 35.29 3.13
1981 2014 0.472471 AGGTCCAGCGTGAAGGAAAA 59.528 50.000 0.00 0.00 35.29 2.29
1993 2026 6.255887 AGCGTGAAGGAAAAGAGATAAATACG 59.744 38.462 0.00 0.00 0.00 3.06
1997 2030 8.756864 GTGAAGGAAAAGAGATAAATACGCTAG 58.243 37.037 0.00 0.00 0.00 3.42
2037 2070 4.482386 GTCAAAGCACGATACAGTCACTA 58.518 43.478 0.00 0.00 0.00 2.74
2045 2078 5.577164 GCACGATACAGTCACTAAACTTCAT 59.423 40.000 0.00 0.00 0.00 2.57
2074 2107 4.084537 GCTCAATACGGTCATGAAATACGG 60.085 45.833 0.00 0.00 0.00 4.02
2106 2139 5.128008 TGATTATACGGTCACTGGTTCATCA 59.872 40.000 0.00 0.00 0.00 3.07
2125 2158 9.571810 GTTCATCATAGAGCTCTGTATTCTATG 57.428 37.037 26.78 18.55 46.18 2.23
2217 2251 9.744468 AGCTGTCGAAATAAACAAATAAAAAGT 57.256 25.926 0.00 0.00 0.00 2.66
2239 2273 2.396590 AATCTAAACGCACGGGTGAT 57.603 45.000 4.58 0.00 0.00 3.06
2290 2340 3.684788 CACTTGAGCCAATACGTTTAGCT 59.315 43.478 0.00 0.00 36.25 3.32
2293 2343 3.670625 TGAGCCAATACGTTTAGCTGTT 58.329 40.909 7.94 0.00 32.97 3.16
2294 2344 4.823157 TGAGCCAATACGTTTAGCTGTTA 58.177 39.130 7.94 0.00 32.97 2.41
2295 2345 4.628333 TGAGCCAATACGTTTAGCTGTTAC 59.372 41.667 7.94 0.00 32.97 2.50
2297 2347 4.868734 AGCCAATACGTTTAGCTGTTACTC 59.131 41.667 0.00 0.00 31.23 2.59
2299 2349 5.416947 CCAATACGTTTAGCTGTTACTCCT 58.583 41.667 0.00 0.00 0.00 3.69
2300 2350 6.567050 CCAATACGTTTAGCTGTTACTCCTA 58.433 40.000 0.00 0.00 0.00 2.94
2301 2351 6.474751 CCAATACGTTTAGCTGTTACTCCTAC 59.525 42.308 0.00 0.00 0.00 3.18
2303 2353 5.458041 ACGTTTAGCTGTTACTCCTACAA 57.542 39.130 0.00 0.00 0.00 2.41
2304 2354 5.225642 ACGTTTAGCTGTTACTCCTACAAC 58.774 41.667 0.00 0.00 0.00 3.32
2306 2356 5.924825 CGTTTAGCTGTTACTCCTACAACTT 59.075 40.000 0.00 0.00 0.00 2.66
2307 2357 7.086376 CGTTTAGCTGTTACTCCTACAACTTA 58.914 38.462 0.00 0.00 0.00 2.24
2308 2358 7.758528 CGTTTAGCTGTTACTCCTACAACTTAT 59.241 37.037 0.00 0.00 0.00 1.73
2312 2362 7.649973 AGCTGTTACTCCTACAACTTATATCG 58.350 38.462 0.00 0.00 0.00 2.92
2313 2363 6.862090 GCTGTTACTCCTACAACTTATATCGG 59.138 42.308 0.00 0.00 0.00 4.18
2398 2570 2.760634 TACTCGGATGCATGTGTTGT 57.239 45.000 2.46 0.00 0.00 3.32
2399 2571 1.159285 ACTCGGATGCATGTGTTGTG 58.841 50.000 2.46 0.00 0.00 3.33
2448 2620 3.771577 AACCAAGTCACCCTAGTCTTG 57.228 47.619 0.00 0.00 37.57 3.02
2460 2632 1.949847 TAGTCTTGAGGAGCTGCCGC 61.950 60.000 0.00 0.01 43.43 6.53
2475 2647 2.332514 CGCCCACTTGTGCACTTG 59.667 61.111 19.41 12.84 0.00 3.16
2485 2657 3.279116 TGCACTTGGTGAGCACGC 61.279 61.111 1.57 0.00 37.35 5.34
2486 2658 4.374702 GCACTTGGTGAGCACGCG 62.375 66.667 3.53 3.53 35.23 6.01
2654 2830 8.319143 TGAGCATATTGTGATGATGAATACAG 57.681 34.615 0.00 0.00 0.00 2.74
2685 2861 5.186992 TGAGAGTTACATTACTTAGCTGGCA 59.813 40.000 0.00 0.00 0.00 4.92
2939 3120 0.528017 ATCAAGAGCGACTCGAGCAA 59.472 50.000 13.61 0.00 35.36 3.91
2940 3121 0.313987 TCAAGAGCGACTCGAGCAAA 59.686 50.000 13.61 0.00 35.36 3.68
2941 3122 0.436531 CAAGAGCGACTCGAGCAAAC 59.563 55.000 13.61 0.00 35.36 2.93
2942 3123 0.315568 AAGAGCGACTCGAGCAAACT 59.684 50.000 13.61 4.85 35.36 2.66
2943 3124 0.315568 AGAGCGACTCGAGCAAACTT 59.684 50.000 13.61 0.00 35.36 2.66
2944 3125 0.436531 GAGCGACTCGAGCAAACTTG 59.563 55.000 13.61 0.00 37.01 3.16
2945 3126 0.249489 AGCGACTCGAGCAAACTTGT 60.249 50.000 13.61 0.00 37.01 3.16
2946 3127 0.161870 GCGACTCGAGCAAACTTGTC 59.838 55.000 13.61 0.00 34.19 3.18
2947 3128 1.487482 CGACTCGAGCAAACTTGTCA 58.513 50.000 13.61 0.00 0.00 3.58
2948 3129 1.858458 CGACTCGAGCAAACTTGTCAA 59.142 47.619 13.61 0.00 0.00 3.18
2949 3130 2.097202 CGACTCGAGCAAACTTGTCAAG 60.097 50.000 13.61 11.17 0.00 3.02
2950 3131 1.599542 ACTCGAGCAAACTTGTCAAGC 59.400 47.619 13.61 0.00 0.00 4.01
2951 3132 0.944386 TCGAGCAAACTTGTCAAGCC 59.056 50.000 12.66 0.00 0.00 4.35
2952 3133 0.384725 CGAGCAAACTTGTCAAGCCG 60.385 55.000 12.66 2.61 0.00 5.52
2953 3134 0.944386 GAGCAAACTTGTCAAGCCGA 59.056 50.000 12.66 0.00 0.00 5.54
2954 3135 1.333619 GAGCAAACTTGTCAAGCCGAA 59.666 47.619 12.66 0.00 0.00 4.30
2955 3136 1.334869 AGCAAACTTGTCAAGCCGAAG 59.665 47.619 12.66 0.31 0.00 3.79
2956 3137 1.758783 CAAACTTGTCAAGCCGAAGC 58.241 50.000 12.66 0.00 40.32 3.86
2957 3138 0.307760 AAACTTGTCAAGCCGAAGCG 59.692 50.000 12.66 0.00 46.67 4.68
2967 3148 2.202743 CCGAAGCGGCGAGATCAA 60.203 61.111 12.98 0.00 41.17 2.57
2968 3149 2.233654 CCGAAGCGGCGAGATCAAG 61.234 63.158 12.98 0.00 41.17 3.02
2969 3150 1.226688 CGAAGCGGCGAGATCAAGA 60.227 57.895 12.98 0.00 0.00 3.02
2970 3151 1.205485 CGAAGCGGCGAGATCAAGAG 61.205 60.000 12.98 0.00 0.00 2.85
2971 3152 1.486644 GAAGCGGCGAGATCAAGAGC 61.487 60.000 12.98 0.00 0.00 4.09
2972 3153 2.202797 GCGGCGAGATCAAGAGCA 60.203 61.111 12.98 0.00 0.00 4.26
3106 3287 2.625906 CACACACGCAGGAACACG 59.374 61.111 0.00 0.00 36.26 4.49
3191 3383 2.345041 CACAAATGCAACACACACACAC 59.655 45.455 0.00 0.00 0.00 3.82
3193 3385 2.991866 CAAATGCAACACACACACACAA 59.008 40.909 0.00 0.00 0.00 3.33
3197 3389 1.718711 GCAACACACACACACAAACAC 59.281 47.619 0.00 0.00 0.00 3.32
3198 3390 2.860194 GCAACACACACACACAAACACA 60.860 45.455 0.00 0.00 0.00 3.72
3199 3391 2.697431 ACACACACACACAAACACAC 57.303 45.000 0.00 0.00 0.00 3.82
3200 3392 1.950216 ACACACACACACAAACACACA 59.050 42.857 0.00 0.00 0.00 3.72
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
955 959 1.072648 TGTAGGTGTGGCTTTGGGTAC 59.927 52.381 0.00 0.00 0.00 3.34
956 960 1.072648 GTGTAGGTGTGGCTTTGGGTA 59.927 52.381 0.00 0.00 0.00 3.69
957 961 0.179001 GTGTAGGTGTGGCTTTGGGT 60.179 55.000 0.00 0.00 0.00 4.51
958 962 0.179004 TGTGTAGGTGTGGCTTTGGG 60.179 55.000 0.00 0.00 0.00 4.12
959 963 1.202758 TCTGTGTAGGTGTGGCTTTGG 60.203 52.381 0.00 0.00 0.00 3.28
960 964 2.254546 TCTGTGTAGGTGTGGCTTTG 57.745 50.000 0.00 0.00 0.00 2.77
961 965 3.290948 TTTCTGTGTAGGTGTGGCTTT 57.709 42.857 0.00 0.00 0.00 3.51
962 966 3.508845 ATTTCTGTGTAGGTGTGGCTT 57.491 42.857 0.00 0.00 0.00 4.35
963 967 3.838317 TCTATTTCTGTGTAGGTGTGGCT 59.162 43.478 0.00 0.00 0.00 4.75
964 968 4.184629 CTCTATTTCTGTGTAGGTGTGGC 58.815 47.826 0.00 0.00 0.00 5.01
965 969 4.759782 CCTCTATTTCTGTGTAGGTGTGG 58.240 47.826 0.00 0.00 0.00 4.17
966 970 4.184629 GCCTCTATTTCTGTGTAGGTGTG 58.815 47.826 0.00 0.00 0.00 3.82
967 971 3.119101 CGCCTCTATTTCTGTGTAGGTGT 60.119 47.826 0.00 0.00 31.49 4.16
968 972 3.130516 TCGCCTCTATTTCTGTGTAGGTG 59.869 47.826 0.00 0.00 36.24 4.00
969 973 3.362706 TCGCCTCTATTTCTGTGTAGGT 58.637 45.455 0.00 0.00 0.00 3.08
970 974 3.797184 GCTCGCCTCTATTTCTGTGTAGG 60.797 52.174 0.00 0.00 0.00 3.18
971 975 3.376540 GCTCGCCTCTATTTCTGTGTAG 58.623 50.000 0.00 0.00 0.00 2.74
972 976 2.100916 GGCTCGCCTCTATTTCTGTGTA 59.899 50.000 0.00 0.00 0.00 2.90
973 977 1.134670 GGCTCGCCTCTATTTCTGTGT 60.135 52.381 0.00 0.00 0.00 3.72
974 978 1.576356 GGCTCGCCTCTATTTCTGTG 58.424 55.000 0.00 0.00 0.00 3.66
975 979 0.466124 GGGCTCGCCTCTATTTCTGT 59.534 55.000 8.00 0.00 36.10 3.41
976 980 0.465705 TGGGCTCGCCTCTATTTCTG 59.534 55.000 8.00 0.00 36.10 3.02
977 981 0.755686 CTGGGCTCGCCTCTATTTCT 59.244 55.000 8.00 0.00 36.10 2.52
978 982 0.882484 GCTGGGCTCGCCTCTATTTC 60.882 60.000 8.00 0.00 36.10 2.17
979 983 1.147153 GCTGGGCTCGCCTCTATTT 59.853 57.895 8.00 0.00 36.10 1.40
980 984 2.812619 GGCTGGGCTCGCCTCTATT 61.813 63.158 11.56 0.00 44.17 1.73
981 985 3.237741 GGCTGGGCTCGCCTCTAT 61.238 66.667 11.56 0.00 44.17 1.98
989 993 1.002502 ACTTAAACGGGCTGGGCTC 60.003 57.895 0.00 0.00 0.00 4.70
990 994 1.002502 GACTTAAACGGGCTGGGCT 60.003 57.895 0.00 0.00 0.00 5.19
991 995 0.608308 AAGACTTAAACGGGCTGGGC 60.608 55.000 0.00 0.00 0.00 5.36
992 996 1.450025 GAAGACTTAAACGGGCTGGG 58.550 55.000 0.00 0.00 0.00 4.45
993 997 1.076332 CGAAGACTTAAACGGGCTGG 58.924 55.000 0.00 0.00 0.00 4.85
994 998 2.074547 TCGAAGACTTAAACGGGCTG 57.925 50.000 0.00 0.00 0.00 4.85
995 999 2.496470 AGATCGAAGACTTAAACGGGCT 59.504 45.455 0.00 0.00 42.51 5.19
996 1000 2.603560 CAGATCGAAGACTTAAACGGGC 59.396 50.000 0.00 0.00 42.51 6.13
997 1001 3.846360 ACAGATCGAAGACTTAAACGGG 58.154 45.455 0.00 0.00 42.51 5.28
998 1002 5.437383 GAACAGATCGAAGACTTAAACGG 57.563 43.478 0.00 0.00 42.51 4.44
1012 1016 4.271291 GGCTTAGTCCATTTCGAACAGATC 59.729 45.833 0.00 0.00 0.00 2.75
1013 1017 4.192317 GGCTTAGTCCATTTCGAACAGAT 58.808 43.478 0.00 0.00 0.00 2.90
1014 1018 3.596214 GGCTTAGTCCATTTCGAACAGA 58.404 45.455 0.00 0.00 0.00 3.41
1015 1019 2.678336 GGGCTTAGTCCATTTCGAACAG 59.322 50.000 0.00 0.00 0.00 3.16
1016 1020 2.039216 TGGGCTTAGTCCATTTCGAACA 59.961 45.455 0.00 0.00 29.54 3.18
1017 1021 2.678336 CTGGGCTTAGTCCATTTCGAAC 59.322 50.000 5.84 0.00 36.42 3.95
1018 1022 2.939640 GCTGGGCTTAGTCCATTTCGAA 60.940 50.000 5.84 0.00 36.42 3.71
1019 1023 1.406887 GCTGGGCTTAGTCCATTTCGA 60.407 52.381 5.84 0.00 36.42 3.71
1020 1024 1.017387 GCTGGGCTTAGTCCATTTCG 58.983 55.000 5.84 0.00 36.42 3.46
1021 1025 1.393603 GGCTGGGCTTAGTCCATTTC 58.606 55.000 5.84 0.00 36.42 2.17
1022 1026 0.033109 GGGCTGGGCTTAGTCCATTT 60.033 55.000 5.84 0.00 42.13 2.32
1023 1027 1.214305 TGGGCTGGGCTTAGTCCATT 61.214 55.000 5.84 0.00 46.98 3.16
1024 1028 1.619363 TGGGCTGGGCTTAGTCCAT 60.619 57.895 5.84 0.00 46.98 3.41
1026 1030 0.033109 ATTTGGGCTGGGCTTAGTCC 60.033 55.000 0.00 0.00 42.88 3.85
1027 1031 1.106285 CATTTGGGCTGGGCTTAGTC 58.894 55.000 0.00 0.00 0.00 2.59
1028 1032 0.972471 GCATTTGGGCTGGGCTTAGT 60.972 55.000 0.00 0.00 0.00 2.24
1029 1033 1.818555 GCATTTGGGCTGGGCTTAG 59.181 57.895 0.00 0.00 0.00 2.18
1030 1034 2.051518 CGCATTTGGGCTGGGCTTA 61.052 57.895 0.00 0.00 0.00 3.09
1031 1035 3.384532 CGCATTTGGGCTGGGCTT 61.385 61.111 0.00 0.00 0.00 4.35
1032 1036 4.684134 ACGCATTTGGGCTGGGCT 62.684 61.111 0.00 0.00 0.00 5.19
1033 1037 3.647649 GAACGCATTTGGGCTGGGC 62.648 63.158 0.00 0.00 0.00 5.36
1034 1038 2.573340 GAACGCATTTGGGCTGGG 59.427 61.111 0.00 0.00 0.00 4.45
1035 1039 0.679640 TAGGAACGCATTTGGGCTGG 60.680 55.000 0.00 0.00 0.00 4.85
1036 1040 1.392589 ATAGGAACGCATTTGGGCTG 58.607 50.000 0.00 0.00 0.00 4.85
1037 1041 1.750778 CAATAGGAACGCATTTGGGCT 59.249 47.619 0.00 0.00 0.00 5.19
1038 1042 1.476488 ACAATAGGAACGCATTTGGGC 59.524 47.619 0.00 0.00 0.00 5.36
1039 1043 3.428862 GGAACAATAGGAACGCATTTGGG 60.429 47.826 0.00 0.00 0.00 4.12
1040 1044 3.428862 GGGAACAATAGGAACGCATTTGG 60.429 47.826 0.00 0.00 0.00 3.28
1041 1045 3.443681 AGGGAACAATAGGAACGCATTTG 59.556 43.478 0.00 0.00 0.00 2.32
1042 1046 3.697166 AGGGAACAATAGGAACGCATTT 58.303 40.909 0.00 0.00 0.00 2.32
1043 1047 3.366052 AGGGAACAATAGGAACGCATT 57.634 42.857 0.00 0.00 0.00 3.56
1044 1048 3.279434 GAAGGGAACAATAGGAACGCAT 58.721 45.455 0.00 0.00 0.00 4.73
1045 1049 2.617021 GGAAGGGAACAATAGGAACGCA 60.617 50.000 0.00 0.00 0.00 5.24
1046 1050 2.014857 GGAAGGGAACAATAGGAACGC 58.985 52.381 0.00 0.00 0.00 4.84
1047 1051 2.277084 CGGAAGGGAACAATAGGAACG 58.723 52.381 0.00 0.00 0.00 3.95
1048 1052 2.014857 GCGGAAGGGAACAATAGGAAC 58.985 52.381 0.00 0.00 0.00 3.62
1049 1053 2.413310 GCGGAAGGGAACAATAGGAA 57.587 50.000 0.00 0.00 0.00 3.36
1060 1064 2.507110 TTTGCTCTCTCGCGGAAGGG 62.507 60.000 6.13 5.07 46.71 3.95
1061 1065 0.670546 TTTTGCTCTCTCGCGGAAGG 60.671 55.000 6.13 0.00 0.00 3.46
1062 1066 0.440371 GTTTTGCTCTCTCGCGGAAG 59.560 55.000 6.13 4.04 0.00 3.46
1063 1067 0.949105 GGTTTTGCTCTCTCGCGGAA 60.949 55.000 6.13 0.00 0.00 4.30
1064 1068 1.374252 GGTTTTGCTCTCTCGCGGA 60.374 57.895 6.13 1.01 0.00 5.54
1065 1069 0.108804 TAGGTTTTGCTCTCTCGCGG 60.109 55.000 6.13 0.00 0.00 6.46
1066 1070 0.992802 GTAGGTTTTGCTCTCTCGCG 59.007 55.000 0.00 0.00 0.00 5.87
1067 1071 1.360820 GGTAGGTTTTGCTCTCTCGC 58.639 55.000 0.00 0.00 0.00 5.03
1068 1072 1.630148 CGGTAGGTTTTGCTCTCTCG 58.370 55.000 0.00 0.00 0.00 4.04
1069 1073 1.360820 GCGGTAGGTTTTGCTCTCTC 58.639 55.000 0.00 0.00 0.00 3.20
1070 1074 0.036294 GGCGGTAGGTTTTGCTCTCT 60.036 55.000 0.00 0.00 0.00 3.10
1071 1075 1.359459 CGGCGGTAGGTTTTGCTCTC 61.359 60.000 0.00 0.00 0.00 3.20
1072 1076 1.375523 CGGCGGTAGGTTTTGCTCT 60.376 57.895 0.00 0.00 0.00 4.09
1073 1077 3.035576 GCGGCGGTAGGTTTTGCTC 62.036 63.158 9.78 0.00 0.00 4.26
1074 1078 3.053896 GCGGCGGTAGGTTTTGCT 61.054 61.111 9.78 0.00 0.00 3.91
1075 1079 4.111016 GGCGGCGGTAGGTTTTGC 62.111 66.667 9.78 0.00 0.00 3.68
1076 1080 3.795342 CGGCGGCGGTAGGTTTTG 61.795 66.667 25.36 0.00 0.00 2.44
1094 1098 4.778415 CGGAGCGTGAGGTGACGG 62.778 72.222 0.00 0.00 45.11 4.79
1109 1113 3.917760 GATCCGTCCCAGGAGCGG 61.918 72.222 16.75 16.75 44.55 5.52
1111 1115 2.833582 TCGATCCGTCCCAGGAGC 60.834 66.667 0.00 0.00 44.55 4.70
1112 1116 2.196925 CCTCGATCCGTCCCAGGAG 61.197 68.421 0.00 0.00 44.55 3.69
1113 1117 2.123854 CCTCGATCCGTCCCAGGA 60.124 66.667 0.00 0.00 45.54 3.86
1114 1118 3.227276 CCCTCGATCCGTCCCAGG 61.227 72.222 0.00 0.00 0.00 4.45
1115 1119 3.917760 GCCCTCGATCCGTCCCAG 61.918 72.222 0.00 0.00 0.00 4.45
1116 1120 4.458829 AGCCCTCGATCCGTCCCA 62.459 66.667 0.00 0.00 0.00 4.37
1117 1121 3.607661 GAGCCCTCGATCCGTCCC 61.608 72.222 0.00 0.00 0.00 4.46
1118 1122 3.607661 GGAGCCCTCGATCCGTCC 61.608 72.222 0.00 0.00 0.00 4.79
1119 1123 3.607661 GGGAGCCCTCGATCCGTC 61.608 72.222 0.00 0.00 36.38 4.79
1120 1124 4.458829 TGGGAGCCCTCGATCCGT 62.459 66.667 7.16 0.00 36.38 4.69
1121 1125 3.610669 CTGGGAGCCCTCGATCCG 61.611 72.222 7.16 0.00 36.38 4.18
1122 1126 3.934962 GCTGGGAGCCCTCGATCC 61.935 72.222 7.16 0.00 34.48 3.36
1194 1198 2.835431 ATCTCGTCTGGGAGGCCG 60.835 66.667 0.00 0.00 34.74 6.13
1195 1199 1.758514 TGATCTCGTCTGGGAGGCC 60.759 63.158 0.00 0.00 34.74 5.19
1196 1200 1.439644 GTGATCTCGTCTGGGAGGC 59.560 63.158 0.00 0.00 34.74 4.70
1197 1201 0.684479 TGGTGATCTCGTCTGGGAGG 60.684 60.000 0.00 0.00 34.74 4.30
1198 1202 0.457851 GTGGTGATCTCGTCTGGGAG 59.542 60.000 0.00 0.00 35.32 4.30
1199 1203 0.970937 GGTGGTGATCTCGTCTGGGA 60.971 60.000 0.00 0.00 0.00 4.37
1200 1204 0.972983 AGGTGGTGATCTCGTCTGGG 60.973 60.000 0.00 0.00 0.00 4.45
1201 1205 0.174389 CAGGTGGTGATCTCGTCTGG 59.826 60.000 0.00 0.00 0.00 3.86
1202 1206 0.174389 CCAGGTGGTGATCTCGTCTG 59.826 60.000 0.00 0.00 0.00 3.51
1203 1207 0.972983 CCCAGGTGGTGATCTCGTCT 60.973 60.000 0.00 0.00 0.00 4.18
1204 1208 0.970937 TCCCAGGTGGTGATCTCGTC 60.971 60.000 0.00 0.00 34.77 4.20
1205 1209 0.972983 CTCCCAGGTGGTGATCTCGT 60.973 60.000 0.00 0.00 34.77 4.18
1206 1210 0.684479 TCTCCCAGGTGGTGATCTCG 60.684 60.000 0.00 0.00 31.71 4.04
1207 1211 1.799933 ATCTCCCAGGTGGTGATCTC 58.200 55.000 0.00 0.00 42.39 2.75
1211 1215 0.325671 GAGGATCTCCCAGGTGGTGA 60.326 60.000 0.00 0.00 40.75 4.02
1212 1216 1.680522 CGAGGATCTCCCAGGTGGTG 61.681 65.000 0.00 0.00 37.41 4.17
1213 1217 1.381872 CGAGGATCTCCCAGGTGGT 60.382 63.158 0.00 0.00 37.41 4.16
1214 1218 1.381872 ACGAGGATCTCCCAGGTGG 60.382 63.158 0.00 0.00 37.41 4.61
1215 1219 1.819229 CACGAGGATCTCCCAGGTG 59.181 63.158 0.00 0.00 37.41 4.00
1216 1220 2.060980 GCACGAGGATCTCCCAGGT 61.061 63.158 0.00 0.00 37.41 4.00
1217 1221 2.818132 GCACGAGGATCTCCCAGG 59.182 66.667 0.00 0.00 37.41 4.45
1218 1222 2.415010 CGCACGAGGATCTCCCAG 59.585 66.667 0.00 0.00 37.41 4.45
1219 1223 3.838271 GCGCACGAGGATCTCCCA 61.838 66.667 0.30 0.00 37.41 4.37
1220 1224 4.593864 GGCGCACGAGGATCTCCC 62.594 72.222 10.83 0.00 36.42 4.30
1221 1225 3.532155 AGGCGCACGAGGATCTCC 61.532 66.667 10.83 0.00 0.00 3.71
1222 1226 2.279120 CAGGCGCACGAGGATCTC 60.279 66.667 10.83 0.00 0.00 2.75
1223 1227 4.521062 GCAGGCGCACGAGGATCT 62.521 66.667 10.83 0.00 38.36 2.75
1300 1304 4.890306 GAGGAGGGGGAGGGAGGC 62.890 77.778 0.00 0.00 0.00 4.70
1302 1306 3.430497 TCGAGGAGGGGGAGGGAG 61.430 72.222 0.00 0.00 0.00 4.30
1312 1316 4.477975 GTCGGTGCCGTCGAGGAG 62.478 72.222 6.70 0.00 45.00 3.69
1372 1376 2.435059 GACGGGTTGGAGCTGCTC 60.435 66.667 21.17 21.17 0.00 4.26
1373 1377 4.379243 CGACGGGTTGGAGCTGCT 62.379 66.667 6.82 0.00 0.00 4.24
1400 1404 4.803426 CGCAGGAGTCGGACAGCC 62.803 72.222 11.27 11.06 0.00 4.85
1401 1405 3.749064 TCGCAGGAGTCGGACAGC 61.749 66.667 11.27 7.72 0.00 4.40
1403 1407 3.733960 CGTCGCAGGAGTCGGACA 61.734 66.667 11.27 0.00 0.00 4.02
1422 1438 1.827969 AGATTGTGAAGGACGAGGAGG 59.172 52.381 0.00 0.00 0.00 4.30
1428 1444 1.197721 GTGCCAAGATTGTGAAGGACG 59.802 52.381 0.00 0.00 0.00 4.79
1435 1451 1.210931 CAGGCGTGCCAAGATTGTG 59.789 57.895 14.29 0.00 38.92 3.33
1448 1464 2.443016 AGTAGGAGAGGCCAGGCG 60.443 66.667 5.01 0.00 40.02 5.52
1450 1466 0.105246 ATGGAGTAGGAGAGGCCAGG 60.105 60.000 5.01 0.00 40.02 4.45
1460 1476 1.139058 CCGGGTTGAAGATGGAGTAGG 59.861 57.143 0.00 0.00 0.00 3.18
1464 1480 1.452108 GGCCGGGTTGAAGATGGAG 60.452 63.158 2.18 0.00 0.00 3.86
1490 1506 3.253677 CGGAAATCATAGAGAGGCGTACT 59.746 47.826 0.00 0.00 0.00 2.73
1491 1507 3.566523 CGGAAATCATAGAGAGGCGTAC 58.433 50.000 0.00 0.00 0.00 3.67
1496 1516 3.397482 CAAGCCGGAAATCATAGAGAGG 58.603 50.000 5.05 0.00 0.00 3.69
1511 1531 0.965439 TTCCCAACATTTCCAAGCCG 59.035 50.000 0.00 0.00 0.00 5.52
1517 1537 3.119137 GCTGGTACATTCCCAACATTTCC 60.119 47.826 0.00 0.00 38.20 3.13
1520 1540 2.825532 GTGCTGGTACATTCCCAACATT 59.174 45.455 0.00 0.00 38.20 2.71
1526 1546 2.112815 GCGGTGCTGGTACATTCCC 61.113 63.158 0.00 0.00 38.20 3.97
1531 1551 2.284039 TAGGGCGGTGCTGGTACA 60.284 61.111 0.00 0.00 0.00 2.90
1551 1571 0.179108 ATTCTGTACTCGCCTTCGCC 60.179 55.000 0.00 0.00 35.26 5.54
1572 1592 4.154195 CGGGTTTTCATCTTTCAGGTACAG 59.846 45.833 0.00 0.00 0.00 2.74
1584 1604 1.304134 AGGGTGCCGGGTTTTCATC 60.304 57.895 2.18 0.00 0.00 2.92
1606 1626 1.607148 AGCCCAAAGTGAAAACGTAGC 59.393 47.619 0.00 0.00 0.00 3.58
1608 1628 2.223745 GGAGCCCAAAGTGAAAACGTA 58.776 47.619 0.00 0.00 0.00 3.57
1609 1629 1.029681 GGAGCCCAAAGTGAAAACGT 58.970 50.000 0.00 0.00 0.00 3.99
1611 1631 1.001706 GACGGAGCCCAAAGTGAAAAC 60.002 52.381 0.00 0.00 0.00 2.43
1612 1632 1.314730 GACGGAGCCCAAAGTGAAAA 58.685 50.000 0.00 0.00 0.00 2.29
1613 1633 0.536460 GGACGGAGCCCAAAGTGAAA 60.536 55.000 0.00 0.00 0.00 2.69
1618 1638 2.747855 GCTGGACGGAGCCCAAAG 60.748 66.667 0.00 0.00 32.53 2.77
1644 1664 2.032860 ATCTTCGTGCCCCCGATGAG 62.033 60.000 10.36 0.00 42.07 2.90
1650 1670 0.034863 TAAACCATCTTCGTGCCCCC 60.035 55.000 0.00 0.00 0.00 5.40
1657 1690 2.348666 CGCCTCAGTTAAACCATCTTCG 59.651 50.000 0.00 0.00 0.00 3.79
1664 1697 2.396157 CGGCCGCCTCAGTTAAACC 61.396 63.158 14.67 0.00 0.00 3.27
1666 1699 1.375013 GACGGCCGCCTCAGTTAAA 60.375 57.895 28.58 0.00 0.00 1.52
1667 1700 2.263540 GACGGCCGCCTCAGTTAA 59.736 61.111 28.58 0.00 0.00 2.01
1677 1710 2.819595 CATGAACCAGGACGGCCG 60.820 66.667 26.86 26.86 39.03 6.13
1681 1714 1.586154 GGCAACCATGAACCAGGACG 61.586 60.000 0.00 0.00 0.00 4.79
1690 1723 2.278849 CCAATGCAGGCAACCATGA 58.721 52.632 0.00 0.00 37.17 3.07
1709 1742 0.325933 TCCTCATCTTGCTGTGGGTG 59.674 55.000 0.00 0.00 31.99 4.61
1719 1752 0.737715 GTCGCTTGCGTCCTCATCTT 60.738 55.000 14.70 0.00 0.00 2.40
1721 1754 0.807667 ATGTCGCTTGCGTCCTCATC 60.808 55.000 14.70 0.23 0.00 2.92
1727 1760 0.230769 GCTATCATGTCGCTTGCGTC 59.769 55.000 14.70 9.92 0.00 5.19
1730 1763 1.154205 ACCGCTATCATGTCGCTTGC 61.154 55.000 0.00 0.00 0.00 4.01
1731 1764 0.578683 CACCGCTATCATGTCGCTTG 59.421 55.000 0.00 0.00 0.00 4.01
1735 1768 0.846401 CGAACACCGCTATCATGTCG 59.154 55.000 0.00 0.00 0.00 4.35
1785 1818 3.484547 CCGGAGTAAACGGCGCAC 61.485 66.667 10.83 2.26 45.34 5.34
1848 1881 3.060272 CGCATCATTAAAGCTAGACACGG 60.060 47.826 0.00 0.00 0.00 4.94
1850 1883 4.317418 CGTCGCATCATTAAAGCTAGACAC 60.317 45.833 0.00 0.00 0.00 3.67
1862 1895 4.048504 TCAATAATCGACGTCGCATCATT 58.951 39.130 32.19 25.90 39.60 2.57
1866 1899 2.804647 TGTCAATAATCGACGTCGCAT 58.195 42.857 32.19 23.80 39.60 4.73
1871 1904 2.359848 TCCGGATGTCAATAATCGACGT 59.640 45.455 0.00 0.00 36.11 4.34
1879 1912 1.140652 TGCAGCATCCGGATGTCAATA 59.859 47.619 37.88 21.67 40.80 1.90
1885 1918 3.274586 CCGTGCAGCATCCGGATG 61.275 66.667 35.50 35.50 44.41 3.51
1888 1921 3.814615 ATAGCCGTGCAGCATCCGG 62.815 63.158 18.01 18.01 44.46 5.14
1889 1922 2.280389 ATAGCCGTGCAGCATCCG 60.280 61.111 0.00 0.00 34.23 4.18
1890 1923 0.815213 TTCATAGCCGTGCAGCATCC 60.815 55.000 0.00 0.00 34.23 3.51
1891 1924 1.003116 CTTTCATAGCCGTGCAGCATC 60.003 52.381 0.00 0.00 34.23 3.91
1892 1925 1.019673 CTTTCATAGCCGTGCAGCAT 58.980 50.000 0.00 0.00 34.23 3.79
1893 1926 1.647545 GCTTTCATAGCCGTGCAGCA 61.648 55.000 0.00 0.00 44.48 4.41
1894 1927 1.063166 GCTTTCATAGCCGTGCAGC 59.937 57.895 0.00 0.00 44.48 5.25
1901 1934 5.521638 GGTCCATACCTTGCTTTCATAGCC 61.522 50.000 0.00 0.00 45.08 3.93
1902 1935 3.565902 GGTCCATACCTTGCTTTCATAGC 59.434 47.826 0.00 0.00 45.50 2.97
1916 1949 3.446516 ACCGAGTACTTGAAGGTCCATAC 59.553 47.826 12.02 0.00 0.00 2.39
1917 1950 3.705051 ACCGAGTACTTGAAGGTCCATA 58.295 45.455 12.02 0.00 0.00 2.74
1918 1951 2.537143 ACCGAGTACTTGAAGGTCCAT 58.463 47.619 12.02 0.00 0.00 3.41
1919 1952 2.005370 ACCGAGTACTTGAAGGTCCA 57.995 50.000 12.02 0.00 0.00 4.02
1920 1953 4.525912 TTAACCGAGTACTTGAAGGTCC 57.474 45.455 12.02 0.00 33.50 4.46
1921 1954 6.620089 GCAATTTAACCGAGTACTTGAAGGTC 60.620 42.308 12.02 0.00 33.50 3.85
1922 1955 5.180680 GCAATTTAACCGAGTACTTGAAGGT 59.819 40.000 12.02 9.24 36.66 3.50
1923 1956 5.391629 GGCAATTTAACCGAGTACTTGAAGG 60.392 44.000 12.02 8.63 0.00 3.46
1924 1957 5.628134 GGCAATTTAACCGAGTACTTGAAG 58.372 41.667 12.02 0.00 0.00 3.02
1925 1958 5.616488 GGCAATTTAACCGAGTACTTGAA 57.384 39.130 12.02 0.00 0.00 2.69
1936 1969 1.153920 CGTGGCCGGCAATTTAACC 60.154 57.895 30.85 8.62 0.00 2.85
1937 1970 4.469052 CGTGGCCGGCAATTTAAC 57.531 55.556 30.85 14.40 0.00 2.01
1947 1980 2.819595 CCTTGATGTCCGTGGCCG 60.820 66.667 0.00 0.00 0.00 6.13
1948 1981 1.745489 GACCTTGATGTCCGTGGCC 60.745 63.158 0.00 0.00 0.00 5.36
1949 1982 1.745489 GGACCTTGATGTCCGTGGC 60.745 63.158 0.00 0.00 44.98 5.01
1950 1983 4.617875 GGACCTTGATGTCCGTGG 57.382 61.111 0.00 0.00 44.98 4.94
1955 1988 0.037326 TCACGCTGGACCTTGATGTC 60.037 55.000 0.00 0.00 34.42 3.06
1956 1989 0.396435 TTCACGCTGGACCTTGATGT 59.604 50.000 0.00 0.00 0.00 3.06
1957 1990 1.081892 CTTCACGCTGGACCTTGATG 58.918 55.000 0.00 0.00 0.00 3.07
1958 1991 0.036010 CCTTCACGCTGGACCTTGAT 60.036 55.000 0.00 0.00 0.00 2.57
1959 1992 1.118965 TCCTTCACGCTGGACCTTGA 61.119 55.000 0.00 0.00 0.00 3.02
1960 1993 0.250295 TTCCTTCACGCTGGACCTTG 60.250 55.000 0.00 0.00 31.24 3.61
1961 1994 0.472471 TTTCCTTCACGCTGGACCTT 59.528 50.000 0.00 0.00 31.24 3.50
1962 1995 0.472471 TTTTCCTTCACGCTGGACCT 59.528 50.000 0.00 0.00 31.24 3.85
1963 1996 0.875059 CTTTTCCTTCACGCTGGACC 59.125 55.000 0.00 0.00 31.24 4.46
1964 1997 1.801178 CTCTTTTCCTTCACGCTGGAC 59.199 52.381 0.00 0.00 31.24 4.02
1965 1998 1.691976 TCTCTTTTCCTTCACGCTGGA 59.308 47.619 0.00 0.00 0.00 3.86
1966 1999 2.169832 TCTCTTTTCCTTCACGCTGG 57.830 50.000 0.00 0.00 0.00 4.85
1967 2000 5.862924 TTTATCTCTTTTCCTTCACGCTG 57.137 39.130 0.00 0.00 0.00 5.18
1968 2001 6.255887 CGTATTTATCTCTTTTCCTTCACGCT 59.744 38.462 0.00 0.00 0.00 5.07
1969 2002 6.411652 CGTATTTATCTCTTTTCCTTCACGC 58.588 40.000 0.00 0.00 0.00 5.34
1970 2003 6.255887 AGCGTATTTATCTCTTTTCCTTCACG 59.744 38.462 0.00 0.00 0.00 4.35
1971 2004 7.541122 AGCGTATTTATCTCTTTTCCTTCAC 57.459 36.000 0.00 0.00 0.00 3.18
1972 2005 8.475639 ACTAGCGTATTTATCTCTTTTCCTTCA 58.524 33.333 0.00 0.00 0.00 3.02
1973 2006 8.756864 CACTAGCGTATTTATCTCTTTTCCTTC 58.243 37.037 0.00 0.00 0.00 3.46
1974 2007 7.711339 CCACTAGCGTATTTATCTCTTTTCCTT 59.289 37.037 0.00 0.00 0.00 3.36
1975 2008 7.147707 ACCACTAGCGTATTTATCTCTTTTCCT 60.148 37.037 0.00 0.00 0.00 3.36
1976 2009 6.985059 ACCACTAGCGTATTTATCTCTTTTCC 59.015 38.462 0.00 0.00 0.00 3.13
1977 2010 7.705325 TGACCACTAGCGTATTTATCTCTTTTC 59.295 37.037 0.00 0.00 0.00 2.29
1978 2011 7.491696 GTGACCACTAGCGTATTTATCTCTTTT 59.508 37.037 0.00 0.00 0.00 2.27
1979 2012 6.979238 GTGACCACTAGCGTATTTATCTCTTT 59.021 38.462 0.00 0.00 0.00 2.52
1980 2013 6.321690 AGTGACCACTAGCGTATTTATCTCTT 59.678 38.462 0.03 0.00 40.43 2.85
1981 2014 5.828859 AGTGACCACTAGCGTATTTATCTCT 59.171 40.000 0.03 0.00 40.43 3.10
1993 2026 3.321497 CTCAACTTCAGTGACCACTAGC 58.679 50.000 1.95 0.00 40.20 3.42
1997 2030 2.158957 TGACCTCAACTTCAGTGACCAC 60.159 50.000 0.00 0.00 0.00 4.16
2037 2070 6.759827 ACCGTATTGAGCGTATTATGAAGTTT 59.240 34.615 0.00 0.00 0.00 2.66
2045 2078 5.441709 TCATGACCGTATTGAGCGTATTA 57.558 39.130 0.00 0.00 0.00 0.98
2074 2107 5.234329 CAGTGACCGTATAATCATCACAACC 59.766 44.000 5.56 0.00 41.72 3.77
2106 2139 6.907853 TGCACATAGAATACAGAGCTCTAT 57.092 37.500 17.75 8.14 33.58 1.98
2125 2158 0.250901 AGTCAACCAGGTCCATGCAC 60.251 55.000 0.00 0.00 0.00 4.57
2217 2251 3.661944 TCACCCGTGCGTTTAGATTTTA 58.338 40.909 0.00 0.00 0.00 1.52
2231 2265 0.611200 TGGTTCGAATCATCACCCGT 59.389 50.000 7.11 0.00 0.00 5.28
2239 2273 2.940994 TGGGTCTTTGGTTCGAATCA 57.059 45.000 7.11 7.11 0.00 2.57
2290 2340 7.886629 ACCGATATAAGTTGTAGGAGTAACA 57.113 36.000 0.00 0.00 0.00 2.41
2293 2343 8.970020 TGAAAACCGATATAAGTTGTAGGAGTA 58.030 33.333 0.00 0.00 0.00 2.59
2294 2344 7.844009 TGAAAACCGATATAAGTTGTAGGAGT 58.156 34.615 0.00 0.00 0.00 3.85
2295 2345 8.888579 ATGAAAACCGATATAAGTTGTAGGAG 57.111 34.615 0.00 0.00 0.00 3.69
2308 2358 8.952278 GCATGGGTATTTATATGAAAACCGATA 58.048 33.333 0.00 0.00 0.00 2.92
2309 2359 7.450014 TGCATGGGTATTTATATGAAAACCGAT 59.550 33.333 0.00 0.00 0.00 4.18
2312 2362 7.331687 GCATGCATGGGTATTTATATGAAAACC 59.668 37.037 27.34 0.55 0.00 3.27
2313 2363 7.871973 TGCATGCATGGGTATTTATATGAAAAC 59.128 33.333 27.34 5.20 0.00 2.43
2398 2570 1.007038 GGACGTGTAGGTGCGTTCA 60.007 57.895 0.00 0.00 41.70 3.18
2399 2571 0.389426 ATGGACGTGTAGGTGCGTTC 60.389 55.000 0.00 0.00 41.70 3.95
2460 2632 0.751277 TCACCAAGTGCACAAGTGGG 60.751 55.000 27.80 19.43 35.32 4.61
2563 2739 6.264744 AGGAGATTACGCAGCTAAGTAATGTA 59.735 38.462 22.78 2.71 41.83 2.29
2564 2740 5.069251 AGGAGATTACGCAGCTAAGTAATGT 59.931 40.000 22.78 20.02 41.83 2.71
2654 2830 5.662674 AGTAATGTAACTCTCACCCTGAC 57.337 43.478 0.00 0.00 0.00 3.51
2939 3120 1.507141 CCGCTTCGGCTTGACAAGTT 61.507 55.000 16.39 0.00 41.17 2.66
2940 3121 1.961277 CCGCTTCGGCTTGACAAGT 60.961 57.895 16.39 0.00 41.17 3.16
2941 3122 2.863153 CCGCTTCGGCTTGACAAG 59.137 61.111 11.02 11.02 41.17 3.16
2951 3132 1.205485 CTCTTGATCTCGCCGCTTCG 61.205 60.000 0.00 0.00 0.00 3.79
2952 3133 1.486644 GCTCTTGATCTCGCCGCTTC 61.487 60.000 0.00 0.00 0.00 3.86
2953 3134 1.520342 GCTCTTGATCTCGCCGCTT 60.520 57.895 0.00 0.00 0.00 4.68
2954 3135 2.105930 GCTCTTGATCTCGCCGCT 59.894 61.111 0.00 0.00 0.00 5.52
2955 3136 1.760268 CTTGCTCTTGATCTCGCCGC 61.760 60.000 0.00 0.00 0.00 6.53
2956 3137 0.179127 TCTTGCTCTTGATCTCGCCG 60.179 55.000 0.00 0.00 0.00 6.46
2957 3138 1.134848 AGTCTTGCTCTTGATCTCGCC 60.135 52.381 0.00 0.00 0.00 5.54
2958 3139 2.192624 GAGTCTTGCTCTTGATCTCGC 58.807 52.381 0.00 0.00 40.98 5.03
2959 3140 2.165234 TGGAGTCTTGCTCTTGATCTCG 59.835 50.000 0.00 0.00 43.62 4.04
2960 3141 3.883830 TGGAGTCTTGCTCTTGATCTC 57.116 47.619 0.00 0.00 43.62 2.75
2961 3142 4.713814 TGTATGGAGTCTTGCTCTTGATCT 59.286 41.667 0.00 0.00 43.62 2.75
2962 3143 5.016051 TGTATGGAGTCTTGCTCTTGATC 57.984 43.478 0.00 0.00 43.62 2.92
2963 3144 5.129980 TCATGTATGGAGTCTTGCTCTTGAT 59.870 40.000 0.00 0.00 43.62 2.57
2964 3145 4.467438 TCATGTATGGAGTCTTGCTCTTGA 59.533 41.667 0.00 0.00 43.62 3.02
2965 3146 4.763073 TCATGTATGGAGTCTTGCTCTTG 58.237 43.478 0.00 0.00 43.62 3.02
2966 3147 4.682859 GCTCATGTATGGAGTCTTGCTCTT 60.683 45.833 0.00 0.00 43.62 2.85
2967 3148 3.181467 GCTCATGTATGGAGTCTTGCTCT 60.181 47.826 0.00 0.00 43.62 4.09
2968 3149 3.129871 GCTCATGTATGGAGTCTTGCTC 58.870 50.000 0.00 0.00 43.39 4.26
2969 3150 2.482664 CGCTCATGTATGGAGTCTTGCT 60.483 50.000 0.00 0.00 34.83 3.91
2970 3151 1.863454 CGCTCATGTATGGAGTCTTGC 59.137 52.381 0.00 0.00 34.83 4.01
2971 3152 1.863454 GCGCTCATGTATGGAGTCTTG 59.137 52.381 0.00 0.00 34.83 3.02
2972 3153 1.536922 CGCGCTCATGTATGGAGTCTT 60.537 52.381 5.56 0.00 34.83 3.01
3059 3240 4.819761 GATGCTGCGTGGAGGCGA 62.820 66.667 0.00 0.00 35.06 5.54
3106 3287 2.277884 GTGTGTGCGTGTTGGTGC 60.278 61.111 0.00 0.00 0.00 5.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.