Multiple sequence alignment - TraesCS6B01G063000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G063000 chr6B 100.000 5618 0 0 1 5618 41971337 41976954 0.000000e+00 10375
1 TraesCS6B01G063000 chr6A 93.884 3041 122 31 1901 4901 23875060 23878076 0.000000e+00 4527
2 TraesCS6B01G063000 chr6A 86.257 764 91 7 1 757 23873242 23873998 0.000000e+00 817
3 TraesCS6B01G063000 chr6A 94.958 357 17 1 5261 5617 23878644 23878999 4.920000e-155 558
4 TraesCS6B01G063000 chr6A 80.784 791 67 41 790 1541 23874098 23874842 1.780000e-149 540
5 TraesCS6B01G063000 chr6A 95.397 239 10 1 5028 5265 23878326 23878564 4.110000e-101 379
6 TraesCS6B01G063000 chr6A 97.727 132 3 0 4893 5024 23878110 23878241 1.570000e-55 228
7 TraesCS6B01G063000 chr6D 93.373 3063 106 30 1888 4901 25757637 25760651 0.000000e+00 4442
8 TraesCS6B01G063000 chr6D 95.187 374 16 2 4893 5265 25760685 25761057 1.740000e-164 590
9 TraesCS6B01G063000 chr6D 82.008 767 67 39 765 1496 25756454 25757184 2.260000e-163 586
10 TraesCS6B01G063000 chr6D 95.822 359 13 2 5261 5617 25761137 25761495 3.770000e-161 579
11 TraesCS6B01G063000 chr6D 78.571 770 129 21 1 757 25753905 25754651 5.090000e-130 475
12 TraesCS6B01G063000 chr7A 82.838 606 49 26 950 1527 33683052 33682474 5.060000e-135 492
13 TraesCS6B01G063000 chr5B 82.919 603 48 29 950 1524 696003508 696004083 5.060000e-135 492
14 TraesCS6B01G063000 chr1A 81.487 632 62 22 950 1553 10358869 10359473 8.520000e-128 468
15 TraesCS6B01G063000 chr1A 81.013 632 65 20 950 1553 503203978 503204582 8.580000e-123 451
16 TraesCS6B01G063000 chr7B 83.507 479 47 20 1026 1497 1918366 1918819 8.710000e-113 418
17 TraesCS6B01G063000 chr1B 83.507 479 47 19 1026 1497 113968382 113968835 8.710000e-113 418
18 TraesCS6B01G063000 chr1B 83.023 483 43 20 1049 1522 441139669 441140121 8.770000e-108 401


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G063000 chr6B 41971337 41976954 5617 False 10375.000000 10375 100.000000 1 5618 1 chr6B.!!$F1 5617
1 TraesCS6B01G063000 chr6A 23873242 23878999 5757 False 1174.833333 4527 91.501167 1 5617 6 chr6A.!!$F1 5616
2 TraesCS6B01G063000 chr6D 25753905 25761495 7590 False 1334.400000 4442 88.992200 1 5617 5 chr6D.!!$F1 5616
3 TraesCS6B01G063000 chr7A 33682474 33683052 578 True 492.000000 492 82.838000 950 1527 1 chr7A.!!$R1 577
4 TraesCS6B01G063000 chr5B 696003508 696004083 575 False 492.000000 492 82.919000 950 1524 1 chr5B.!!$F1 574
5 TraesCS6B01G063000 chr1A 10358869 10359473 604 False 468.000000 468 81.487000 950 1553 1 chr1A.!!$F1 603
6 TraesCS6B01G063000 chr1A 503203978 503204582 604 False 451.000000 451 81.013000 950 1553 1 chr1A.!!$F2 603

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
570 585 0.179124 CGGCCTCTACTGCTCTTCAC 60.179 60.000 0.00 0.00 0.00 3.18 F
1497 3395 0.107643 TTTCCTGCCGTGACATGTCA 59.892 50.000 24.56 24.56 37.24 3.58 F
1541 3446 0.176680 GACTCCACTGACCGATGCAT 59.823 55.000 0.00 0.00 0.00 3.96 F
1781 3887 0.387929 CCTATAGCTTTCGACGCCCA 59.612 55.000 0.00 0.00 0.00 5.36 F
1792 3898 0.596082 CGACGCCCAATTCCTTTTGT 59.404 50.000 0.00 0.00 0.00 2.83 F
3248 5361 0.110486 TGCTTTTGTGTCTCCCCTCC 59.890 55.000 0.00 0.00 0.00 4.30 F
3446 5560 0.245539 CAGGACCAATTTGCTGCCTG 59.754 55.000 12.78 12.78 37.21 4.85 F
4328 6451 2.412770 GCATTCCCAAAATTTCAGTGCG 59.587 45.455 0.00 0.00 0.00 5.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1950 4056 0.107643 TCTCCAACAACACGATGGCA 59.892 50.000 0.00 0.00 37.47 4.92 R
2379 4489 1.028130 TGCAATGTTTCGAGGTGCAA 58.972 45.000 7.73 0.00 41.95 4.08 R
2582 4692 1.113788 AGACAGAGCTGCCTGAGATC 58.886 55.000 20.14 10.45 37.37 2.75 R
2605 4715 1.314730 GGTGTTTTCGGTGTCACCAT 58.685 50.000 21.91 0.00 46.44 3.55 R
3320 5434 1.317613 TTTGCTCCTGTGCGACAATT 58.682 45.000 0.00 0.00 35.36 2.32 R
4351 6476 0.761187 TGCTTGAGACCACTGCTCTT 59.239 50.000 0.00 0.00 33.57 2.85 R
4584 6735 0.941463 CGGGCGATTTCTCCTGATCG 60.941 60.000 1.70 1.70 45.81 3.69 R
5284 7670 3.091633 ACACTTCCCCTCATCCAATTG 57.908 47.619 0.00 0.00 0.00 2.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
163 174 4.234673 GGAACCCTGAGTGTCCCT 57.765 61.111 0.00 0.00 0.00 4.20
174 185 3.384168 TGAGTGTCCCTATATGTGCCTT 58.616 45.455 0.00 0.00 0.00 4.35
175 186 3.134623 TGAGTGTCCCTATATGTGCCTTG 59.865 47.826 0.00 0.00 0.00 3.61
193 204 0.607217 TGTAGGGTCTTCGTCGCTGA 60.607 55.000 0.00 0.00 0.00 4.26
252 263 3.257935 TGGCTTTCCCAATGGTACG 57.742 52.632 0.00 0.00 41.82 3.67
264 275 4.509616 CCAATGGTACGTTGATGTCCTTA 58.490 43.478 10.25 0.00 0.00 2.69
269 280 4.158209 TGGTACGTTGATGTCCTTATTCGA 59.842 41.667 0.00 0.00 0.00 3.71
299 310 3.942829 TGATGAGTTGGAGGATGTTGTC 58.057 45.455 0.00 0.00 0.00 3.18
317 328 2.022129 CGACCGTTGGACACTCTGC 61.022 63.158 0.00 0.00 0.00 4.26
340 351 2.147958 GGCGTGATACTGTTTGTCCAA 58.852 47.619 0.00 0.00 0.00 3.53
341 352 2.747446 GGCGTGATACTGTTTGTCCAAT 59.253 45.455 0.00 0.00 0.00 3.16
342 353 3.936453 GGCGTGATACTGTTTGTCCAATA 59.064 43.478 0.00 0.00 0.00 1.90
391 402 6.092259 GGCTTTGTGACGTGTTTATATTCTCT 59.908 38.462 0.00 0.00 0.00 3.10
399 410 6.814043 ACGTGTTTATATTCTCTAGTTCCCC 58.186 40.000 0.00 0.00 0.00 4.81
407 418 1.286849 TCTCTAGTTCCCCGTCCATCA 59.713 52.381 0.00 0.00 0.00 3.07
474 485 2.284405 GTCCCTTCCCCTGTCCGA 60.284 66.667 0.00 0.00 0.00 4.55
476 487 1.382695 TCCCTTCCCCTGTCCGATC 60.383 63.158 0.00 0.00 0.00 3.69
485 496 1.320344 CCTGTCCGATCGGAGTTGGA 61.320 60.000 36.38 16.63 46.16 3.53
489 500 2.761767 TGTCCGATCGGAGTTGGAATTA 59.238 45.455 36.38 9.04 46.16 1.40
509 520 2.477104 TCATATGACCCTCCTCAGCA 57.523 50.000 0.00 0.00 0.00 4.41
510 521 2.981921 TCATATGACCCTCCTCAGCAT 58.018 47.619 0.00 0.00 0.00 3.79
541 552 7.307694 TCTCTAGAACGACGATCTATCTAGTC 58.692 42.308 14.29 2.97 40.17 2.59
567 582 2.726351 GCCGGCCTCTACTGCTCTT 61.726 63.158 18.11 0.00 0.00 2.85
570 585 0.179124 CGGCCTCTACTGCTCTTCAC 60.179 60.000 0.00 0.00 0.00 3.18
576 591 1.071605 CTACTGCTCTTCACCAACGC 58.928 55.000 0.00 0.00 0.00 4.84
577 592 0.391228 TACTGCTCTTCACCAACGCA 59.609 50.000 0.00 0.00 0.00 5.24
579 594 1.001974 ACTGCTCTTCACCAACGCATA 59.998 47.619 0.00 0.00 0.00 3.14
603 618 2.003301 GGCTGCTACTTACACAAGCTC 58.997 52.381 0.00 0.00 37.16 4.09
622 637 4.134563 GCTCCTGAGTTTCAACAAGGTTA 58.865 43.478 9.91 0.00 36.76 2.85
664 679 2.677979 GGCGACAACGAGCTTTCCC 61.678 63.158 0.00 0.00 42.66 3.97
690 705 4.789075 GCCGACCGCTAGCGAACA 62.789 66.667 37.39 0.00 42.83 3.18
703 718 4.440250 GCTAGCGAACATAGAAGGAAGACA 60.440 45.833 0.00 0.00 0.00 3.41
705 720 2.605366 GCGAACATAGAAGGAAGACAGC 59.395 50.000 0.00 0.00 0.00 4.40
714 729 5.344743 AGAAGGAAGACAGCGATGATTTA 57.655 39.130 8.12 0.00 0.00 1.40
717 732 5.998454 AGGAAGACAGCGATGATTTATTG 57.002 39.130 8.12 0.00 0.00 1.90
724 740 6.037610 AGACAGCGATGATTTATTGAAGAACC 59.962 38.462 8.12 0.00 0.00 3.62
728 744 7.011389 CAGCGATGATTTATTGAAGAACCTGTA 59.989 37.037 0.00 0.00 0.00 2.74
740 756 7.921786 TGAAGAACCTGTATGTAATTCCTTG 57.078 36.000 0.00 0.00 0.00 3.61
747 763 6.151144 ACCTGTATGTAATTCCTTGTTCTTGC 59.849 38.462 0.00 0.00 0.00 4.01
760 2571 1.620323 GTTCTTGCAAGGGCTGGAATT 59.380 47.619 25.73 0.00 41.91 2.17
763 2574 3.091545 TCTTGCAAGGGCTGGAATTAAG 58.908 45.455 25.73 0.00 41.91 1.85
781 2592 7.435192 GGAATTAAGAAAATCGGCTATGTTTGG 59.565 37.037 0.00 0.00 0.00 3.28
807 2647 4.888326 AAAAGGCCAACTGCATTAATCA 57.112 36.364 5.01 0.00 44.55 2.57
808 2648 4.460948 AAAGGCCAACTGCATTAATCAG 57.539 40.909 5.01 11.20 44.55 2.90
811 2651 2.223665 GGCCAACTGCATTAATCAGAGC 60.224 50.000 16.77 15.03 43.89 4.09
815 2655 5.100259 CCAACTGCATTAATCAGAGCAAAG 58.900 41.667 16.77 3.67 36.44 2.77
887 2740 1.517832 GACGTGGAGGATCACTGGG 59.482 63.158 0.00 0.00 36.25 4.45
889 2742 2.735772 CGTGGAGGATCACTGGGGG 61.736 68.421 0.00 0.00 36.25 5.40
890 2743 2.692368 TGGAGGATCACTGGGGGC 60.692 66.667 0.00 0.00 36.25 5.80
973 2831 3.844090 GAGCACCGCCTCTCCTCC 61.844 72.222 0.00 0.00 0.00 4.30
975 2833 3.394836 GCACCGCCTCTCCTCCTT 61.395 66.667 0.00 0.00 0.00 3.36
987 2849 2.040359 CTCCTTCCCCCTCCTCCC 60.040 72.222 0.00 0.00 0.00 4.30
1295 3182 3.083349 CACCCCGCTCCTCATCCA 61.083 66.667 0.00 0.00 0.00 3.41
1298 3185 1.072159 CCCCGCTCCTCATCCAATC 59.928 63.158 0.00 0.00 0.00 2.67
1305 3192 1.342819 CTCCTCATCCAATCCGTCTCC 59.657 57.143 0.00 0.00 0.00 3.71
1307 3194 2.177016 TCCTCATCCAATCCGTCTCCTA 59.823 50.000 0.00 0.00 0.00 2.94
1308 3195 2.297597 CCTCATCCAATCCGTCTCCTAC 59.702 54.545 0.00 0.00 0.00 3.18
1309 3196 2.297597 CTCATCCAATCCGTCTCCTACC 59.702 54.545 0.00 0.00 0.00 3.18
1310 3197 2.039418 CATCCAATCCGTCTCCTACCA 58.961 52.381 0.00 0.00 0.00 3.25
1311 3198 2.241281 TCCAATCCGTCTCCTACCAA 57.759 50.000 0.00 0.00 0.00 3.67
1312 3199 2.759355 TCCAATCCGTCTCCTACCAAT 58.241 47.619 0.00 0.00 0.00 3.16
1313 3200 2.698797 TCCAATCCGTCTCCTACCAATC 59.301 50.000 0.00 0.00 0.00 2.67
1314 3201 2.700897 CCAATCCGTCTCCTACCAATCT 59.299 50.000 0.00 0.00 0.00 2.40
1315 3202 3.895656 CCAATCCGTCTCCTACCAATCTA 59.104 47.826 0.00 0.00 0.00 1.98
1316 3203 4.344102 CCAATCCGTCTCCTACCAATCTAA 59.656 45.833 0.00 0.00 0.00 2.10
1319 3206 5.063017 TCCGTCTCCTACCAATCTAATCT 57.937 43.478 0.00 0.00 0.00 2.40
1330 3220 9.307121 CCTACCAATCTAATCTAATCTAATGCG 57.693 37.037 0.00 0.00 0.00 4.73
1331 3221 9.862371 CTACCAATCTAATCTAATCTAATGCGT 57.138 33.333 0.00 0.00 0.00 5.24
1336 3226 6.387465 TCTAATCTAATCTAATGCGTTCCCG 58.613 40.000 0.00 0.00 37.07 5.14
1351 3241 2.604174 CCCGCGGTTGTTCTCACAC 61.604 63.158 26.12 0.00 30.32 3.82
1352 3242 1.594293 CCGCGGTTGTTCTCACACT 60.594 57.895 19.50 0.00 30.32 3.55
1354 3244 0.874175 CGCGGTTGTTCTCACACTCA 60.874 55.000 0.00 0.00 30.32 3.41
1356 3246 1.217882 CGGTTGTTCTCACACTCACC 58.782 55.000 0.00 0.00 30.56 4.02
1358 3248 1.134220 GGTTGTTCTCACACTCACCCA 60.134 52.381 0.00 0.00 28.35 4.51
1359 3249 1.940613 GTTGTTCTCACACTCACCCAC 59.059 52.381 0.00 0.00 30.32 4.61
1360 3250 0.468226 TGTTCTCACACTCACCCACC 59.532 55.000 0.00 0.00 0.00 4.61
1361 3251 0.250338 GTTCTCACACTCACCCACCC 60.250 60.000 0.00 0.00 0.00 4.61
1363 3253 0.832135 TCTCACACTCACCCACCCTC 60.832 60.000 0.00 0.00 0.00 4.30
1364 3254 2.159819 CTCACACTCACCCACCCTCG 62.160 65.000 0.00 0.00 0.00 4.63
1365 3255 2.200370 ACACTCACCCACCCTCGA 59.800 61.111 0.00 0.00 0.00 4.04
1366 3256 1.229209 ACACTCACCCACCCTCGAT 60.229 57.895 0.00 0.00 0.00 3.59
1367 3257 1.219124 CACTCACCCACCCTCGATG 59.781 63.158 0.00 0.00 0.00 3.84
1425 3315 2.509916 CCCAGCAGCATCTCCTCC 59.490 66.667 0.00 0.00 0.00 4.30
1436 3326 2.365941 GCATCTCCTCCTACAAGGTACC 59.634 54.545 2.73 2.73 37.69 3.34
1438 3328 1.637553 TCTCCTCCTACAAGGTACCGT 59.362 52.381 6.18 0.00 37.69 4.83
1439 3329 2.846206 TCTCCTCCTACAAGGTACCGTA 59.154 50.000 6.18 2.82 37.69 4.02
1440 3330 2.948315 CTCCTCCTACAAGGTACCGTAC 59.052 54.545 6.18 0.00 37.69 3.67
1477 3375 1.376037 CTCTCCAACCCCGCTCAAC 60.376 63.158 0.00 0.00 0.00 3.18
1486 3384 2.335712 CCCGCTCAACTTTCCTGCC 61.336 63.158 0.00 0.00 0.00 4.85
1497 3395 0.107643 TTTCCTGCCGTGACATGTCA 59.892 50.000 24.56 24.56 37.24 3.58
1498 3396 0.324614 TTCCTGCCGTGACATGTCAT 59.675 50.000 30.10 0.00 42.18 3.06
1499 3397 0.391528 TCCTGCCGTGACATGTCATG 60.392 55.000 32.46 32.46 44.14 3.07
1500 3398 1.426621 CTGCCGTGACATGTCATGC 59.573 57.895 33.53 32.14 43.41 4.06
1503 3401 1.426621 CCGTGACATGTCATGCTGC 59.573 57.895 33.53 19.54 43.41 5.25
1504 3402 1.300266 CCGTGACATGTCATGCTGCA 61.300 55.000 33.53 4.13 43.41 4.41
1534 3439 2.622064 ACAGTTTGACTCCACTGACC 57.378 50.000 6.32 0.00 42.74 4.02
1535 3440 1.202533 ACAGTTTGACTCCACTGACCG 60.203 52.381 6.32 0.00 42.74 4.79
1541 3446 0.176680 GACTCCACTGACCGATGCAT 59.823 55.000 0.00 0.00 0.00 3.96
1543 3448 1.410517 ACTCCACTGACCGATGCATAG 59.589 52.381 0.00 0.00 0.00 2.23
1548 3453 3.496130 CCACTGACCGATGCATAGAAATC 59.504 47.826 8.55 3.91 0.00 2.17
1553 3458 4.130118 GACCGATGCATAGAAATCCAGTT 58.870 43.478 8.55 0.00 0.00 3.16
1554 3459 4.526970 ACCGATGCATAGAAATCCAGTTT 58.473 39.130 8.55 0.00 0.00 2.66
1555 3460 4.336433 ACCGATGCATAGAAATCCAGTTTG 59.664 41.667 8.55 0.00 0.00 2.93
1556 3461 4.576053 CCGATGCATAGAAATCCAGTTTGA 59.424 41.667 8.55 0.00 0.00 2.69
1557 3462 5.504665 CCGATGCATAGAAATCCAGTTTGAC 60.505 44.000 8.55 0.00 0.00 3.18
1558 3463 5.295292 CGATGCATAGAAATCCAGTTTGACT 59.705 40.000 0.00 0.00 0.00 3.41
1559 3464 6.510799 CGATGCATAGAAATCCAGTTTGACTC 60.511 42.308 0.00 0.00 0.00 3.36
1560 3465 4.943705 TGCATAGAAATCCAGTTTGACTCC 59.056 41.667 0.00 0.00 0.00 3.85
1563 3468 6.096001 GCATAGAAATCCAGTTTGACTCCAAT 59.904 38.462 0.00 0.00 31.46 3.16
1564 3469 7.283127 GCATAGAAATCCAGTTTGACTCCAATA 59.717 37.037 0.00 0.00 31.46 1.90
1566 3471 7.454260 AGAAATCCAGTTTGACTCCAATAAC 57.546 36.000 0.00 0.00 31.46 1.89
1568 3473 3.670625 TCCAGTTTGACTCCAATAACCG 58.329 45.455 0.00 0.00 31.46 4.44
1569 3474 2.747446 CCAGTTTGACTCCAATAACCGG 59.253 50.000 0.00 0.00 31.46 5.28
1570 3475 3.558321 CCAGTTTGACTCCAATAACCGGA 60.558 47.826 9.46 0.00 31.46 5.14
1572 3477 5.424757 CAGTTTGACTCCAATAACCGGATA 58.575 41.667 9.46 0.00 31.46 2.59
1573 3478 5.293569 CAGTTTGACTCCAATAACCGGATAC 59.706 44.000 9.46 0.00 31.46 2.24
1574 3479 5.046159 AGTTTGACTCCAATAACCGGATACA 60.046 40.000 9.46 0.00 31.46 2.29
1575 3480 5.423704 TTGACTCCAATAACCGGATACAA 57.576 39.130 9.46 0.00 0.00 2.41
1576 3481 5.423704 TGACTCCAATAACCGGATACAAA 57.576 39.130 9.46 0.00 0.00 2.83
1579 3484 6.540914 TGACTCCAATAACCGGATACAAATTC 59.459 38.462 9.46 0.00 0.00 2.17
1580 3485 6.419791 ACTCCAATAACCGGATACAAATTCA 58.580 36.000 9.46 0.00 0.00 2.57
1581 3486 6.317893 ACTCCAATAACCGGATACAAATTCAC 59.682 38.462 9.46 0.00 0.00 3.18
1584 3528 5.728351 ATAACCGGATACAAATTCACACG 57.272 39.130 9.46 0.00 0.00 4.49
1599 3543 0.476771 ACACGAATTGGTTCACCCCT 59.523 50.000 0.00 0.00 33.86 4.79
1600 3544 0.881118 CACGAATTGGTTCACCCCTG 59.119 55.000 0.00 0.00 33.86 4.45
1601 3545 0.476771 ACGAATTGGTTCACCCCTGT 59.523 50.000 0.00 0.00 33.86 4.00
1602 3546 1.133606 ACGAATTGGTTCACCCCTGTT 60.134 47.619 0.00 0.00 33.86 3.16
1603 3547 1.539827 CGAATTGGTTCACCCCTGTTC 59.460 52.381 0.00 0.00 33.86 3.18
1606 3550 2.534042 TTGGTTCACCCCTGTTCAAA 57.466 45.000 0.00 0.00 34.29 2.69
1607 3551 1.770294 TGGTTCACCCCTGTTCAAAC 58.230 50.000 0.00 0.00 34.29 2.93
1619 3563 2.098614 TGTTCAAACTTCCTGCTGCAA 58.901 42.857 3.02 0.00 0.00 4.08
1623 3567 2.694628 TCAAACTTCCTGCTGCAACAAT 59.305 40.909 3.02 0.00 0.00 2.71
1624 3568 3.132646 TCAAACTTCCTGCTGCAACAATT 59.867 39.130 3.02 0.00 0.00 2.32
1625 3569 3.375782 AACTTCCTGCTGCAACAATTC 57.624 42.857 3.02 0.00 0.00 2.17
1627 3571 2.961062 ACTTCCTGCTGCAACAATTCTT 59.039 40.909 3.02 0.00 0.00 2.52
1629 3573 4.141869 ACTTCCTGCTGCAACAATTCTTTT 60.142 37.500 3.02 0.00 0.00 2.27
1631 3575 2.803956 CCTGCTGCAACAATTCTTTTGG 59.196 45.455 3.02 0.00 0.00 3.28
1635 3579 3.251487 GCTGCAACAATTCTTTTGGCATT 59.749 39.130 0.00 0.00 0.00 3.56
1639 3583 7.507733 TGCAACAATTCTTTTGGCATTAATT 57.492 28.000 0.00 0.00 0.00 1.40
1640 3584 7.361127 TGCAACAATTCTTTTGGCATTAATTG 58.639 30.769 16.30 16.30 41.23 2.32
1641 3585 7.013083 TGCAACAATTCTTTTGGCATTAATTGT 59.987 29.630 17.17 17.17 46.97 2.71
1642 3586 8.502387 GCAACAATTCTTTTGGCATTAATTGTA 58.498 29.630 20.48 0.00 45.27 2.41
1650 3594 8.908903 TCTTTTGGCATTAATTGTAACGGATAT 58.091 29.630 0.00 0.00 0.00 1.63
1654 3598 7.644490 TGGCATTAATTGTAACGGATATGAAC 58.356 34.615 0.00 0.00 0.00 3.18
1655 3599 7.081976 GGCATTAATTGTAACGGATATGAACC 58.918 38.462 0.00 0.00 0.00 3.62
1665 3609 3.027974 GGATATGAACCGACTAGTGGC 57.972 52.381 0.00 0.00 0.00 5.01
1666 3610 2.288886 GGATATGAACCGACTAGTGGCC 60.289 54.545 0.00 0.00 0.00 5.36
1671 3615 0.968901 AACCGACTAGTGGCCGATGA 60.969 55.000 0.00 0.00 0.00 2.92
1674 3618 0.866061 CGACTAGTGGCCGATGAACG 60.866 60.000 0.00 0.00 42.18 3.95
1685 3633 4.748102 TGGCCGATGAACGTAGATAAATTC 59.252 41.667 0.00 0.00 40.78 2.17
1686 3634 4.989168 GGCCGATGAACGTAGATAAATTCT 59.011 41.667 0.00 0.00 40.78 2.40
1687 3635 6.154445 GGCCGATGAACGTAGATAAATTCTA 58.846 40.000 0.00 0.00 40.78 2.10
1701 3649 8.023021 AGATAAATTCTACTAGTGTGGATGCA 57.977 34.615 5.39 0.00 33.71 3.96
1702 3650 7.928706 AGATAAATTCTACTAGTGTGGATGCAC 59.071 37.037 10.90 10.90 33.71 4.57
1718 3824 2.691409 GCACATGCACCTACCTCTAA 57.309 50.000 0.00 0.00 41.59 2.10
1719 3825 3.199880 GCACATGCACCTACCTCTAAT 57.800 47.619 0.00 0.00 41.59 1.73
1721 3827 4.058817 GCACATGCACCTACCTCTAATAC 58.941 47.826 0.00 0.00 41.59 1.89
1722 3828 4.442893 GCACATGCACCTACCTCTAATACA 60.443 45.833 0.00 0.00 41.59 2.29
1725 3831 6.767902 CACATGCACCTACCTCTAATACATTT 59.232 38.462 0.00 0.00 0.00 2.32
1726 3832 6.992715 ACATGCACCTACCTCTAATACATTTC 59.007 38.462 0.00 0.00 0.00 2.17
1729 3835 6.183360 TGCACCTACCTCTAATACATTTCCTC 60.183 42.308 0.00 0.00 0.00 3.71
1732 3838 7.287927 CACCTACCTCTAATACATTTCCTCTCA 59.712 40.741 0.00 0.00 0.00 3.27
1733 3839 7.507616 ACCTACCTCTAATACATTTCCTCTCAG 59.492 40.741 0.00 0.00 0.00 3.35
1740 3846 6.840780 AATACATTTCCTCTCAGTTTTGGG 57.159 37.500 0.00 0.00 0.00 4.12
1745 3851 5.789643 TTTCCTCTCAGTTTTGGGAAATG 57.210 39.130 0.00 0.00 39.96 2.32
1747 3853 3.397618 TCCTCTCAGTTTTGGGAAATGGA 59.602 43.478 0.00 0.00 32.16 3.41
1754 3860 4.512571 CAGTTTTGGGAAATGGAAGCTTTG 59.487 41.667 0.00 0.00 0.00 2.77
1765 3871 3.253220 TGGAAGCTTTGTTACCCTCCTA 58.747 45.455 0.00 0.00 0.00 2.94
1768 3874 5.130477 TGGAAGCTTTGTTACCCTCCTATAG 59.870 44.000 0.00 0.00 0.00 1.31
1769 3875 4.691326 AGCTTTGTTACCCTCCTATAGC 57.309 45.455 0.00 0.00 0.00 2.97
1770 3876 4.299485 AGCTTTGTTACCCTCCTATAGCT 58.701 43.478 0.00 0.00 0.00 3.32
1772 3878 5.191921 AGCTTTGTTACCCTCCTATAGCTTT 59.808 40.000 0.00 0.00 32.97 3.51
1773 3879 5.527951 GCTTTGTTACCCTCCTATAGCTTTC 59.472 44.000 0.00 0.00 0.00 2.62
1776 3882 4.340381 TGTTACCCTCCTATAGCTTTCGAC 59.660 45.833 0.00 0.00 0.00 4.20
1777 3883 1.955080 ACCCTCCTATAGCTTTCGACG 59.045 52.381 0.00 0.00 0.00 5.12
1778 3884 1.336056 CCCTCCTATAGCTTTCGACGC 60.336 57.143 0.00 0.00 0.00 5.19
1779 3885 1.336056 CCTCCTATAGCTTTCGACGCC 60.336 57.143 0.00 0.00 0.00 5.68
1780 3886 0.672342 TCCTATAGCTTTCGACGCCC 59.328 55.000 0.00 0.00 0.00 6.13
1781 3887 0.387929 CCTATAGCTTTCGACGCCCA 59.612 55.000 0.00 0.00 0.00 5.36
1782 3888 1.202486 CCTATAGCTTTCGACGCCCAA 60.202 52.381 0.00 0.00 0.00 4.12
1783 3889 2.548067 CCTATAGCTTTCGACGCCCAAT 60.548 50.000 0.00 0.00 0.00 3.16
1784 3890 2.038387 ATAGCTTTCGACGCCCAATT 57.962 45.000 0.00 0.00 0.00 2.32
1785 3891 1.365699 TAGCTTTCGACGCCCAATTC 58.634 50.000 0.00 0.00 0.00 2.17
1786 3892 1.136774 GCTTTCGACGCCCAATTCC 59.863 57.895 0.00 0.00 0.00 3.01
1787 3893 1.305930 GCTTTCGACGCCCAATTCCT 61.306 55.000 0.00 0.00 0.00 3.36
1788 3894 1.165270 CTTTCGACGCCCAATTCCTT 58.835 50.000 0.00 0.00 0.00 3.36
1789 3895 1.539827 CTTTCGACGCCCAATTCCTTT 59.460 47.619 0.00 0.00 0.00 3.11
1790 3896 1.611519 TTCGACGCCCAATTCCTTTT 58.388 45.000 0.00 0.00 0.00 2.27
1791 3897 0.878416 TCGACGCCCAATTCCTTTTG 59.122 50.000 0.00 0.00 0.00 2.44
1792 3898 0.596082 CGACGCCCAATTCCTTTTGT 59.404 50.000 0.00 0.00 0.00 2.83
1793 3899 1.807742 CGACGCCCAATTCCTTTTGTA 59.192 47.619 0.00 0.00 0.00 2.41
1794 3900 2.413634 CGACGCCCAATTCCTTTTGTAC 60.414 50.000 0.00 0.00 0.00 2.90
1795 3901 2.817844 GACGCCCAATTCCTTTTGTACT 59.182 45.455 0.00 0.00 0.00 2.73
1796 3902 2.556622 ACGCCCAATTCCTTTTGTACTG 59.443 45.455 0.00 0.00 0.00 2.74
1797 3903 2.817258 CGCCCAATTCCTTTTGTACTGA 59.183 45.455 0.00 0.00 0.00 3.41
1798 3904 3.119849 CGCCCAATTCCTTTTGTACTGAG 60.120 47.826 0.00 0.00 0.00 3.35
1799 3905 3.367395 GCCCAATTCCTTTTGTACTGAGC 60.367 47.826 0.00 0.00 0.00 4.26
1800 3906 4.082125 CCCAATTCCTTTTGTACTGAGCT 58.918 43.478 0.00 0.00 0.00 4.09
1801 3907 5.253330 CCCAATTCCTTTTGTACTGAGCTA 58.747 41.667 0.00 0.00 0.00 3.32
1802 3908 5.355350 CCCAATTCCTTTTGTACTGAGCTAG 59.645 44.000 0.00 0.00 0.00 3.42
1803 3909 5.163713 CCAATTCCTTTTGTACTGAGCTAGC 60.164 44.000 6.62 6.62 0.00 3.42
1804 3910 4.891992 TTCCTTTTGTACTGAGCTAGCT 57.108 40.909 19.45 19.45 0.00 3.32
1805 3911 4.891992 TCCTTTTGTACTGAGCTAGCTT 57.108 40.909 20.42 5.57 0.00 3.74
1806 3912 5.228945 TCCTTTTGTACTGAGCTAGCTTT 57.771 39.130 20.42 9.12 0.00 3.51
1807 3913 5.621193 TCCTTTTGTACTGAGCTAGCTTTT 58.379 37.500 20.42 8.74 0.00 2.27
1808 3914 6.062095 TCCTTTTGTACTGAGCTAGCTTTTT 58.938 36.000 20.42 8.37 0.00 1.94
1837 3943 9.095065 AGCTTATGTAATTTAACTAAGACACCG 57.905 33.333 9.06 0.00 0.00 4.94
1838 3944 8.333186 GCTTATGTAATTTAACTAAGACACCGG 58.667 37.037 0.00 0.00 0.00 5.28
1839 3945 9.374838 CTTATGTAATTTAACTAAGACACCGGT 57.625 33.333 0.00 0.00 0.00 5.28
1840 3946 9.723601 TTATGTAATTTAACTAAGACACCGGTT 57.276 29.630 2.97 0.00 0.00 4.44
1841 3947 8.625786 ATGTAATTTAACTAAGACACCGGTTT 57.374 30.769 2.97 0.00 0.00 3.27
1842 3948 8.086851 TGTAATTTAACTAAGACACCGGTTTC 57.913 34.615 13.01 13.01 0.00 2.78
1843 3949 5.851047 ATTTAACTAAGACACCGGTTTCG 57.149 39.130 14.85 1.66 0.00 3.46
1844 3950 2.896745 AACTAAGACACCGGTTTCGT 57.103 45.000 14.85 14.24 33.95 3.85
1845 3951 2.896745 ACTAAGACACCGGTTTCGTT 57.103 45.000 14.37 11.45 33.95 3.85
1846 3952 4.320608 AACTAAGACACCGGTTTCGTTA 57.679 40.909 14.37 11.91 33.95 3.18
1847 3953 4.320608 ACTAAGACACCGGTTTCGTTAA 57.679 40.909 14.37 0.00 33.95 2.01
1848 3954 4.886579 ACTAAGACACCGGTTTCGTTAAT 58.113 39.130 14.37 2.05 33.95 1.40
1849 3955 4.687483 ACTAAGACACCGGTTTCGTTAATG 59.313 41.667 14.37 6.18 33.95 1.90
1850 3956 3.389925 AGACACCGGTTTCGTTAATGA 57.610 42.857 14.85 0.00 33.95 2.57
1851 3957 3.731089 AGACACCGGTTTCGTTAATGAA 58.269 40.909 14.85 6.00 33.95 2.57
1852 3958 4.128643 AGACACCGGTTTCGTTAATGAAA 58.871 39.130 17.06 17.06 35.58 2.69
1853 3959 4.758165 AGACACCGGTTTCGTTAATGAAAT 59.242 37.500 22.33 8.40 39.80 2.17
1854 3960 5.239963 AGACACCGGTTTCGTTAATGAAATT 59.760 36.000 22.33 7.98 39.80 1.82
1855 3961 5.216648 ACACCGGTTTCGTTAATGAAATTG 58.783 37.500 22.33 18.25 39.80 2.32
1856 3962 4.619336 CACCGGTTTCGTTAATGAAATTGG 59.381 41.667 26.32 26.32 39.80 3.16
1857 3963 4.519730 ACCGGTTTCGTTAATGAAATTGGA 59.480 37.500 30.63 10.95 39.80 3.53
1858 3964 5.092781 CCGGTTTCGTTAATGAAATTGGAG 58.907 41.667 25.08 15.74 39.80 3.86
1859 3965 5.106475 CCGGTTTCGTTAATGAAATTGGAGA 60.106 40.000 25.08 5.17 39.80 3.71
1860 3966 6.021596 CGGTTTCGTTAATGAAATTGGAGAG 58.978 40.000 22.33 8.34 39.80 3.20
1861 3967 6.128391 CGGTTTCGTTAATGAAATTGGAGAGA 60.128 38.462 22.33 0.00 39.80 3.10
1862 3968 7.021790 GGTTTCGTTAATGAAATTGGAGAGAC 58.978 38.462 22.33 9.52 39.80 3.36
1863 3969 7.308348 GGTTTCGTTAATGAAATTGGAGAGACA 60.308 37.037 22.33 0.00 39.80 3.41
1864 3970 6.968131 TCGTTAATGAAATTGGAGAGACAG 57.032 37.500 0.00 0.00 36.99 3.51
1865 3971 5.351465 TCGTTAATGAAATTGGAGAGACAGC 59.649 40.000 0.00 0.00 36.99 4.40
1866 3972 5.352569 CGTTAATGAAATTGGAGAGACAGCT 59.647 40.000 0.00 0.00 36.99 4.24
1867 3973 6.456181 CGTTAATGAAATTGGAGAGACAGCTC 60.456 42.308 0.00 0.00 36.99 4.09
1868 3974 5.176741 AATGAAATTGGAGAGACAGCTCT 57.823 39.130 0.00 0.00 44.88 4.09
1880 3986 5.132897 GAGACAGCTCTCTTTTCAGAAGA 57.867 43.478 0.00 0.00 40.09 2.87
1881 3987 5.537188 GAGACAGCTCTCTTTTCAGAAGAA 58.463 41.667 0.00 0.00 40.09 2.52
1882 3988 5.540911 AGACAGCTCTCTTTTCAGAAGAAG 58.459 41.667 0.00 0.00 34.71 2.85
1883 3989 5.304101 AGACAGCTCTCTTTTCAGAAGAAGA 59.696 40.000 0.00 7.26 34.71 2.87
1884 3990 5.923204 ACAGCTCTCTTTTCAGAAGAAGAA 58.077 37.500 8.32 0.00 34.71 2.52
1885 3991 6.352516 ACAGCTCTCTTTTCAGAAGAAGAAA 58.647 36.000 8.32 0.00 34.71 2.52
1886 3992 6.825721 ACAGCTCTCTTTTCAGAAGAAGAAAA 59.174 34.615 0.00 0.00 41.27 2.29
1887 3993 7.337942 ACAGCTCTCTTTTCAGAAGAAGAAAAA 59.662 33.333 0.00 0.00 42.45 1.94
1888 3994 8.351461 CAGCTCTCTTTTCAGAAGAAGAAAAAT 58.649 33.333 0.00 0.00 42.45 1.82
1889 3995 8.567104 AGCTCTCTTTTCAGAAGAAGAAAAATC 58.433 33.333 0.00 0.00 42.45 2.17
1890 3996 8.348507 GCTCTCTTTTCAGAAGAAGAAAAATCA 58.651 33.333 0.00 0.00 42.45 2.57
1891 3997 9.662545 CTCTCTTTTCAGAAGAAGAAAAATCAC 57.337 33.333 0.00 0.00 42.45 3.06
1892 3998 8.624776 TCTCTTTTCAGAAGAAGAAAAATCACC 58.375 33.333 0.00 0.00 42.45 4.02
1893 3999 8.292444 TCTTTTCAGAAGAAGAAAAATCACCA 57.708 30.769 0.00 0.00 42.45 4.17
1894 4000 8.748412 TCTTTTCAGAAGAAGAAAAATCACCAA 58.252 29.630 0.00 0.00 42.45 3.67
1895 4001 8.702163 TTTTCAGAAGAAGAAAAATCACCAAC 57.298 30.769 0.00 0.00 40.76 3.77
1896 4002 6.391227 TCAGAAGAAGAAAAATCACCAACC 57.609 37.500 0.00 0.00 0.00 3.77
1897 4003 6.129179 TCAGAAGAAGAAAAATCACCAACCT 58.871 36.000 0.00 0.00 0.00 3.50
1898 4004 6.263168 TCAGAAGAAGAAAAATCACCAACCTC 59.737 38.462 0.00 0.00 0.00 3.85
1899 4005 6.264067 CAGAAGAAGAAAAATCACCAACCTCT 59.736 38.462 0.00 0.00 0.00 3.69
1900 4006 7.445402 CAGAAGAAGAAAAATCACCAACCTCTA 59.555 37.037 0.00 0.00 0.00 2.43
1901 4007 7.998964 AGAAGAAGAAAAATCACCAACCTCTAA 59.001 33.333 0.00 0.00 0.00 2.10
1902 4008 8.712228 AAGAAGAAAAATCACCAACCTCTAAT 57.288 30.769 0.00 0.00 0.00 1.73
1903 4009 9.807921 AAGAAGAAAAATCACCAACCTCTAATA 57.192 29.630 0.00 0.00 0.00 0.98
1904 4010 9.981460 AGAAGAAAAATCACCAACCTCTAATAT 57.019 29.630 0.00 0.00 0.00 1.28
1906 4012 9.981460 AAGAAAAATCACCAACCTCTAATATCT 57.019 29.630 0.00 0.00 0.00 1.98
1964 4073 0.743688 TGCTTTGCCATCGTGTTGTT 59.256 45.000 0.00 0.00 0.00 2.83
1970 4079 1.234821 GCCATCGTGTTGTTGGAGAA 58.765 50.000 0.00 0.00 39.43 2.87
1995 4104 4.158384 CGAGTTTGTTTATGTGCATCACC 58.842 43.478 0.00 0.00 32.73 4.02
1997 4106 5.562696 CGAGTTTGTTTATGTGCATCACCTT 60.563 40.000 0.00 0.00 32.73 3.50
1998 4107 5.531634 AGTTTGTTTATGTGCATCACCTTG 58.468 37.500 0.00 0.00 32.73 3.61
1999 4108 5.301551 AGTTTGTTTATGTGCATCACCTTGA 59.698 36.000 0.00 0.00 32.73 3.02
2000 4109 5.375417 TTGTTTATGTGCATCACCTTGAG 57.625 39.130 0.00 0.00 32.73 3.02
2001 4110 4.397420 TGTTTATGTGCATCACCTTGAGT 58.603 39.130 0.00 0.00 32.73 3.41
2002 4111 5.555966 TGTTTATGTGCATCACCTTGAGTA 58.444 37.500 0.00 0.00 32.73 2.59
2003 4112 5.411361 TGTTTATGTGCATCACCTTGAGTAC 59.589 40.000 0.00 0.00 32.73 2.73
2009 4118 3.070878 TGCATCACCTTGAGTACTTGACA 59.929 43.478 0.00 0.00 0.00 3.58
2011 4120 3.746045 TCACCTTGAGTACTTGACACC 57.254 47.619 0.00 0.00 0.00 4.16
2020 4129 9.280174 CCTTGAGTACTTGACACCTTAATAAAA 57.720 33.333 0.00 0.00 0.00 1.52
2064 4174 4.396166 GGGGTTGATGTTAGACTGATGTTG 59.604 45.833 0.00 0.00 0.00 3.33
2076 4186 3.769844 GACTGATGTTGGGACTCTTCCTA 59.230 47.826 0.00 0.00 42.38 2.94
2143 4253 1.067071 GGGTCTTCGGACGAGTTCATT 60.067 52.381 0.00 0.00 45.31 2.57
2176 4286 4.462417 CTCGCTCTCGCCGTCGTT 62.462 66.667 0.00 0.00 36.96 3.85
2253 4363 1.478654 GCTTCACCCTTTGTCCTCCAA 60.479 52.381 0.00 0.00 0.00 3.53
2284 4394 1.639298 GAGTGCGGAACCATGCTCAC 61.639 60.000 0.00 0.00 0.00 3.51
2377 4487 9.733556 TTCAAAACAGCTATAGATCAGGTAAAA 57.266 29.630 3.21 0.00 0.00 1.52
2378 4488 9.733556 TCAAAACAGCTATAGATCAGGTAAAAA 57.266 29.630 3.21 0.00 0.00 1.94
2402 4512 2.867429 CACCTCGAAACATTGCATTCC 58.133 47.619 0.00 0.00 0.00 3.01
2483 4593 3.957497 AGATCGAGGGTATATCCATCAGC 59.043 47.826 4.46 0.00 46.16 4.26
2581 4691 3.994392 GCTGATGACAACGAAGGTAAGAA 59.006 43.478 0.00 0.00 0.00 2.52
2582 4692 4.092091 GCTGATGACAACGAAGGTAAGAAG 59.908 45.833 0.00 0.00 0.00 2.85
2583 4693 5.462530 TGATGACAACGAAGGTAAGAAGA 57.537 39.130 0.00 0.00 0.00 2.87
2602 4712 1.481772 GATCTCAGGCAGCTCTGTCTT 59.518 52.381 0.56 0.00 44.13 3.01
2605 4715 3.903467 TCTCAGGCAGCTCTGTCTTATA 58.097 45.455 0.56 0.00 44.13 0.98
2652 4762 2.543687 TTACTCCGACGAGCTGCTGC 62.544 60.000 7.01 7.62 40.03 5.25
2671 4781 3.815962 CTGCTGCTAATGAATCTGCTGAT 59.184 43.478 0.00 0.00 33.70 2.90
2712 4822 7.808672 TGAAAATTGCATTCTTTTTATGCCAG 58.191 30.769 5.47 0.00 46.05 4.85
2809 4919 4.161189 AGTTCAGAGTACATGTAGCATGCT 59.839 41.667 25.99 25.99 0.00 3.79
3095 5208 6.865834 AACATCCCTGGAGATATCAGATAC 57.134 41.667 5.32 0.00 34.36 2.24
3248 5361 0.110486 TGCTTTTGTGTCTCCCCTCC 59.890 55.000 0.00 0.00 0.00 4.30
3283 5397 6.587226 TGCTTTTGTATTCTAAGCATTTGCAG 59.413 34.615 5.20 0.00 46.59 4.41
3320 5434 7.608153 TCCGTAATTTTCAGTGATTCTCTACA 58.392 34.615 0.00 0.00 0.00 2.74
3387 5501 8.934507 TTATAAAAGTTCTGGTGTTTGTTTGG 57.065 30.769 0.00 0.00 0.00 3.28
3404 5518 2.634982 TGGATGTTTTGCTGATTCGC 57.365 45.000 0.00 0.00 0.00 4.70
3446 5560 0.245539 CAGGACCAATTTGCTGCCTG 59.754 55.000 12.78 12.78 37.21 4.85
3506 5620 5.339008 TTGCGGTATGTCTTCTGTATTCT 57.661 39.130 0.00 0.00 0.00 2.40
3507 5621 6.459670 TTGCGGTATGTCTTCTGTATTCTA 57.540 37.500 0.00 0.00 0.00 2.10
3508 5622 6.073327 TGCGGTATGTCTTCTGTATTCTAG 57.927 41.667 0.00 0.00 0.00 2.43
3575 5689 6.255020 AGCGATAACATACGAACTTTAACCTG 59.745 38.462 0.00 0.00 0.00 4.00
3724 5838 2.731968 CGTGCCTAACCATCATTTGTGC 60.732 50.000 0.00 0.00 0.00 4.57
3753 5867 8.149973 TGTCTGTAACTAACATTTTCCACTTC 57.850 34.615 0.00 0.00 37.50 3.01
3897 6019 7.060421 TCCATGTCTTTCTTCACCTTAAAAGT 58.940 34.615 0.00 0.00 32.03 2.66
3974 6097 8.637196 TTGTAACATACAATTGGTTGATACCA 57.363 30.769 18.77 11.05 46.47 3.25
4278 6401 4.887748 AGGATACAAGGTATGCAATCTCG 58.112 43.478 9.94 0.00 41.41 4.04
4312 6435 7.934457 ACTGGTTGATATGATTAAGTGCATTC 58.066 34.615 0.00 0.00 0.00 2.67
4328 6451 2.412770 GCATTCCCAAAATTTCAGTGCG 59.587 45.455 0.00 0.00 0.00 5.34
4385 6536 6.532657 GGTCTCAAGCAATTTATTTGACATGG 59.467 38.462 0.00 0.00 37.53 3.66
4416 6567 3.072476 TCTGTGAAGTCCGGGAAAATCTT 59.928 43.478 0.00 0.00 0.00 2.40
4532 6683 3.410631 TCGGAGCATCACTTTTACCAA 57.589 42.857 0.00 0.00 36.25 3.67
4584 6735 4.773323 CACTTGGTGGGAAGAGAATTTC 57.227 45.455 0.00 0.00 0.00 2.17
4645 6821 2.079925 GTCTGACTGGCAAATGGAGAC 58.920 52.381 0.00 0.00 0.00 3.36
4658 6834 2.489938 TGGAGACACATAGGCCAAAC 57.510 50.000 5.01 0.00 33.40 2.93
4659 6835 1.004277 TGGAGACACATAGGCCAAACC 59.996 52.381 5.01 0.00 34.45 3.27
4660 6836 1.369625 GAGACACATAGGCCAAACCG 58.630 55.000 5.01 0.00 46.52 4.44
4661 6837 0.676782 AGACACATAGGCCAAACCGC 60.677 55.000 5.01 0.00 46.52 5.68
4704 6880 4.293415 CCTTGAAAACAGAGTGTTCATGC 58.707 43.478 3.79 0.00 40.14 4.06
4777 6953 2.283298 GTCATAGTCATGCAGTGTGGG 58.717 52.381 0.00 0.00 31.73 4.61
4798 6974 3.141522 TTGCCTGTGCTGCAACTGC 62.142 57.895 2.77 7.75 43.36 4.40
5153 7454 1.994779 GGTTTGCCAGCATGAAAATCG 59.005 47.619 0.00 0.00 39.69 3.34
5159 7460 3.243670 TGCCAGCATGAAAATCGTGAAAA 60.244 39.130 0.00 0.00 39.69 2.29
5216 7517 9.505995 GAAAACTTCGGTAAAACTGAAATTGTA 57.494 29.630 3.15 0.00 42.37 2.41
5232 7533 2.396590 TGTATGGTCCGGAAGCTTTC 57.603 50.000 5.23 0.00 0.00 2.62
5251 7552 5.578336 GCTTTCTTATGCTCCATTTGGAAAC 59.422 40.000 0.18 0.00 44.91 2.78
5284 7670 1.676014 CGGTGGATCCAGAAACCTCAC 60.676 57.143 16.81 0.00 35.57 3.51
5329 7715 8.550376 GTTGTGTTGAGTAATTGCATTTTCAAT 58.450 29.630 10.17 0.00 38.23 2.57
5469 7856 8.618702 AAGATGAAGATATACAGGCAAATGAG 57.381 34.615 0.00 0.00 0.00 2.90
5504 7891 9.139174 GGATCCTTTTTATGTGTACACAATTTG 57.861 33.333 31.01 18.01 45.41 2.32
5573 7961 1.725641 TGTAGGCAAGCATCGAACAG 58.274 50.000 0.00 0.00 0.00 3.16
5609 7997 7.455891 AGGACAACATATGCATTATCATCTGA 58.544 34.615 3.54 0.00 0.00 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 52 5.072600 TCCACTCTAGCAAACCCTAGAAAAA 59.927 40.000 0.00 0.00 42.24 1.94
55 57 2.432510 CCTCCACTCTAGCAAACCCTAG 59.567 54.545 0.00 0.00 36.88 3.02
163 174 4.038763 CGAAGACCCTACAAGGCACATATA 59.961 45.833 0.00 0.00 32.73 0.86
174 185 0.607217 TCAGCGACGAAGACCCTACA 60.607 55.000 0.00 0.00 0.00 2.74
175 186 0.179169 GTCAGCGACGAAGACCCTAC 60.179 60.000 0.00 0.00 0.00 3.18
193 204 1.001815 CCGTTGTTGCCTCAATTTCGT 60.002 47.619 0.00 0.00 0.00 3.85
248 259 5.803967 ACTTCGAATAAGGACATCAACGTAC 59.196 40.000 0.00 0.00 0.00 3.67
249 260 5.803461 CACTTCGAATAAGGACATCAACGTA 59.197 40.000 0.00 0.00 0.00 3.57
250 261 4.625742 CACTTCGAATAAGGACATCAACGT 59.374 41.667 0.00 0.00 0.00 3.99
251 262 4.032900 CCACTTCGAATAAGGACATCAACG 59.967 45.833 0.00 0.00 0.00 4.10
252 263 4.201822 GCCACTTCGAATAAGGACATCAAC 60.202 45.833 13.07 0.00 0.00 3.18
264 275 3.614092 ACTCATCAATGCCACTTCGAAT 58.386 40.909 0.00 0.00 0.00 3.34
269 280 3.087031 CTCCAACTCATCAATGCCACTT 58.913 45.455 0.00 0.00 0.00 3.16
299 310 2.022129 GCAGAGTGTCCAACGGTCG 61.022 63.158 0.00 0.00 0.00 4.79
317 328 2.159627 GGACAAACAGTATCACGCCAAG 59.840 50.000 0.00 0.00 0.00 3.61
357 368 1.875576 CGTCACAAAGCCAGCTTCTCT 60.876 52.381 5.17 0.00 34.84 3.10
391 402 1.484653 CATGTGATGGACGGGGAACTA 59.515 52.381 0.00 0.00 0.00 2.24
407 418 4.156922 GCGGTATCTAGTAGAGCATCATGT 59.843 45.833 5.98 0.00 37.82 3.21
474 485 7.106239 GGTCATATGATAATTCCAACTCCGAT 58.894 38.462 9.02 0.00 0.00 4.18
476 487 5.643777 GGGTCATATGATAATTCCAACTCCG 59.356 44.000 9.02 0.00 0.00 4.63
485 496 5.549228 TGCTGAGGAGGGTCATATGATAATT 59.451 40.000 9.02 0.00 0.00 1.40
489 500 2.981921 TGCTGAGGAGGGTCATATGAT 58.018 47.619 9.02 0.00 0.00 2.45
509 520 1.331138 CGTCGTTCTAGAGAAGCCGAT 59.669 52.381 7.86 0.00 35.83 4.18
510 521 0.725686 CGTCGTTCTAGAGAAGCCGA 59.274 55.000 0.00 1.99 34.27 5.54
520 531 7.975058 CCATAGACTAGATAGATCGTCGTTCTA 59.025 40.741 13.86 13.86 0.00 2.10
521 532 6.814644 CCATAGACTAGATAGATCGTCGTTCT 59.185 42.308 10.50 10.50 0.00 3.01
541 552 1.901948 TAGAGGCCGGCGACCATAG 60.902 63.158 22.54 0.00 0.00 2.23
567 582 2.125310 CCGGCTATGCGTTGGTGA 60.125 61.111 0.00 0.00 0.00 4.02
570 585 3.576356 CAGCCGGCTATGCGTTGG 61.576 66.667 32.30 10.65 0.00 3.77
590 605 4.141711 TGAAACTCAGGAGCTTGTGTAAGT 60.142 41.667 0.00 0.00 36.27 2.24
594 609 2.945668 GTTGAAACTCAGGAGCTTGTGT 59.054 45.455 0.00 0.00 0.00 3.72
603 618 6.017440 TCGAAATAACCTTGTTGAAACTCAGG 60.017 38.462 9.30 9.30 36.62 3.86
622 637 0.468226 TGCCTCCGCCTTATCGAAAT 59.532 50.000 0.00 0.00 0.00 2.17
644 659 0.389426 GGAAAGCTCGTTGTCGCCTA 60.389 55.000 0.00 0.00 36.96 3.93
650 665 1.597027 CGTGGGGAAAGCTCGTTGT 60.597 57.895 0.00 0.00 0.00 3.32
655 670 3.119096 GCGTCGTGGGGAAAGCTC 61.119 66.667 0.00 0.00 0.00 4.09
685 700 2.854777 CGCTGTCTTCCTTCTATGTTCG 59.145 50.000 0.00 0.00 0.00 3.95
689 704 4.313277 TCATCGCTGTCTTCCTTCTATG 57.687 45.455 0.00 0.00 0.00 2.23
690 705 5.543507 AATCATCGCTGTCTTCCTTCTAT 57.456 39.130 0.00 0.00 0.00 1.98
703 718 5.882557 ACAGGTTCTTCAATAAATCATCGCT 59.117 36.000 0.00 0.00 0.00 4.93
705 720 8.830580 ACATACAGGTTCTTCAATAAATCATCG 58.169 33.333 0.00 0.00 0.00 3.84
714 729 8.960591 CAAGGAATTACATACAGGTTCTTCAAT 58.039 33.333 0.00 0.00 0.00 2.57
717 732 7.923414 ACAAGGAATTACATACAGGTTCTTC 57.077 36.000 0.00 0.00 0.00 2.87
724 740 7.144722 TGCAAGAACAAGGAATTACATACAG 57.855 36.000 0.00 0.00 0.00 2.74
740 756 1.260544 ATTCCAGCCCTTGCAAGAAC 58.739 50.000 28.05 18.02 41.13 3.01
747 763 5.343249 CGATTTTCTTAATTCCAGCCCTTG 58.657 41.667 0.00 0.00 0.00 3.61
760 2571 5.502079 TCCCAAACATAGCCGATTTTCTTA 58.498 37.500 0.00 0.00 0.00 2.10
763 2574 4.712122 TTCCCAAACATAGCCGATTTTC 57.288 40.909 0.00 0.00 0.00 2.29
824 2667 1.675720 GGGCCCCACATGGAAATTCG 61.676 60.000 12.23 0.00 37.39 3.34
862 2705 2.320339 GATCCTCCACGTCGGTCGAC 62.320 65.000 7.13 7.13 42.86 4.20
867 2710 1.139734 CAGTGATCCTCCACGTCGG 59.860 63.158 0.00 0.00 41.67 4.79
890 2743 4.935495 AGCCCGCACCACACACTG 62.935 66.667 0.00 0.00 0.00 3.66
902 2755 4.214327 GAAGGAGAGGCGAGCCCG 62.214 72.222 10.95 0.00 39.21 6.13
905 2758 2.762043 AGGGAAGGAGAGGCGAGC 60.762 66.667 0.00 0.00 0.00 5.03
911 2764 2.485795 CGCGAGGAGGGAAGGAGAG 61.486 68.421 0.00 0.00 34.27 3.20
938 2791 2.848679 TGCTCTGGTGGTGGCTGA 60.849 61.111 0.00 0.00 0.00 4.26
1281 3167 1.072159 GGATTGGATGAGGAGCGGG 59.928 63.158 0.00 0.00 0.00 6.13
1289 3175 2.317040 GGTAGGAGACGGATTGGATGA 58.683 52.381 0.00 0.00 0.00 2.92
1295 3182 6.078664 AGATTAGATTGGTAGGAGACGGATT 58.921 40.000 0.00 0.00 0.00 3.01
1298 3185 6.896021 TTAGATTAGATTGGTAGGAGACGG 57.104 41.667 0.00 0.00 0.00 4.79
1305 3192 9.862371 ACGCATTAGATTAGATTAGATTGGTAG 57.138 33.333 0.00 0.00 0.00 3.18
1307 3194 9.209175 GAACGCATTAGATTAGATTAGATTGGT 57.791 33.333 0.00 0.00 0.00 3.67
1308 3195 8.660373 GGAACGCATTAGATTAGATTAGATTGG 58.340 37.037 0.00 0.00 0.00 3.16
1309 3196 8.660373 GGGAACGCATTAGATTAGATTAGATTG 58.340 37.037 0.00 0.00 0.00 2.67
1310 3197 8.779354 GGGAACGCATTAGATTAGATTAGATT 57.221 34.615 0.00 0.00 0.00 2.40
1330 3220 1.595929 TGAGAACAACCGCGGGAAC 60.596 57.895 31.76 15.36 0.00 3.62
1331 3221 1.595929 GTGAGAACAACCGCGGGAA 60.596 57.895 31.76 1.94 0.00 3.97
1336 3226 0.582005 GTGAGTGTGAGAACAACCGC 59.418 55.000 0.00 0.00 0.00 5.68
1339 3229 1.940613 GTGGGTGAGTGTGAGAACAAC 59.059 52.381 0.00 0.00 0.00 3.32
1351 3241 0.324943 AAACATCGAGGGTGGGTGAG 59.675 55.000 0.69 0.00 0.00 3.51
1352 3242 0.323629 GAAACATCGAGGGTGGGTGA 59.676 55.000 0.69 0.00 0.00 4.02
1354 3244 0.991920 ATGAAACATCGAGGGTGGGT 59.008 50.000 0.69 0.00 0.00 4.51
1356 3246 2.401583 TCATGAAACATCGAGGGTGG 57.598 50.000 0.69 0.00 0.00 4.61
1358 3248 2.305927 AGGTTCATGAAACATCGAGGGT 59.694 45.455 24.89 0.00 39.81 4.34
1359 3249 2.939103 GAGGTTCATGAAACATCGAGGG 59.061 50.000 24.89 0.00 38.73 4.30
1360 3250 2.939103 GGAGGTTCATGAAACATCGAGG 59.061 50.000 24.89 0.00 47.00 4.63
1361 3251 3.372206 GTGGAGGTTCATGAAACATCGAG 59.628 47.826 24.89 0.00 47.00 4.04
1363 3253 2.094258 CGTGGAGGTTCATGAAACATCG 59.906 50.000 24.89 17.60 47.00 3.84
1364 3254 2.420022 CCGTGGAGGTTCATGAAACATC 59.580 50.000 24.89 17.57 45.67 3.06
1365 3255 2.436417 CCGTGGAGGTTCATGAAACAT 58.564 47.619 24.89 10.38 39.81 2.71
1366 3256 1.544537 CCCGTGGAGGTTCATGAAACA 60.545 52.381 24.89 11.88 39.81 2.83
1367 3257 1.165270 CCCGTGGAGGTTCATGAAAC 58.835 55.000 15.99 15.99 38.74 2.78
1447 3337 4.475135 GGAGAGGAAGGGCGTGCC 62.475 72.222 1.16 1.16 0.00 5.01
1477 3375 0.798776 GACATGTCACGGCAGGAAAG 59.201 55.000 21.07 0.00 0.00 2.62
1486 3384 0.518195 TTGCAGCATGACATGTCACG 59.482 50.000 30.09 23.72 43.11 4.35
1524 3429 1.683385 TCTATGCATCGGTCAGTGGAG 59.317 52.381 0.19 0.00 0.00 3.86
1527 3432 3.496130 GGATTTCTATGCATCGGTCAGTG 59.504 47.826 0.19 0.00 0.00 3.66
1529 3434 3.732212 TGGATTTCTATGCATCGGTCAG 58.268 45.455 0.19 0.00 0.00 3.51
1534 3439 5.295292 AGTCAAACTGGATTTCTATGCATCG 59.705 40.000 0.19 0.00 31.23 3.84
1535 3440 6.238593 GGAGTCAAACTGGATTTCTATGCATC 60.239 42.308 0.19 0.00 31.23 3.91
1541 3446 7.610305 GGTTATTGGAGTCAAACTGGATTTCTA 59.390 37.037 0.00 0.00 36.36 2.10
1543 3448 6.621613 GGTTATTGGAGTCAAACTGGATTTC 58.378 40.000 0.00 0.00 36.36 2.17
1548 3453 2.747446 CCGGTTATTGGAGTCAAACTGG 59.253 50.000 0.00 9.18 35.22 4.00
1553 3458 5.423704 TTGTATCCGGTTATTGGAGTCAA 57.576 39.130 0.00 0.00 39.30 3.18
1554 3459 5.423704 TTTGTATCCGGTTATTGGAGTCA 57.576 39.130 0.00 0.00 39.30 3.41
1555 3460 6.540914 TGAATTTGTATCCGGTTATTGGAGTC 59.459 38.462 0.00 0.00 39.30 3.36
1556 3461 6.317893 GTGAATTTGTATCCGGTTATTGGAGT 59.682 38.462 0.00 0.00 39.30 3.85
1557 3462 6.317642 TGTGAATTTGTATCCGGTTATTGGAG 59.682 38.462 0.00 0.00 39.30 3.86
1558 3463 6.094325 GTGTGAATTTGTATCCGGTTATTGGA 59.906 38.462 0.00 0.00 40.46 3.53
1559 3464 6.262601 GTGTGAATTTGTATCCGGTTATTGG 58.737 40.000 0.00 0.00 0.00 3.16
1560 3465 5.963004 CGTGTGAATTTGTATCCGGTTATTG 59.037 40.000 0.00 0.00 0.00 1.90
1563 3468 4.818642 TCGTGTGAATTTGTATCCGGTTA 58.181 39.130 0.00 0.00 0.00 2.85
1564 3469 3.666274 TCGTGTGAATTTGTATCCGGTT 58.334 40.909 0.00 0.00 0.00 4.44
1566 3471 4.875544 ATTCGTGTGAATTTGTATCCGG 57.124 40.909 0.00 0.00 42.14 5.14
1576 3481 2.556622 GGGTGAACCAATTCGTGTGAAT 59.443 45.455 1.16 0.00 46.75 2.57
1579 3484 0.596082 GGGGTGAACCAATTCGTGTG 59.404 55.000 1.16 0.00 42.91 3.82
1580 3485 0.476771 AGGGGTGAACCAATTCGTGT 59.523 50.000 1.16 0.00 42.91 4.49
1581 3486 0.881118 CAGGGGTGAACCAATTCGTG 59.119 55.000 1.16 0.00 42.91 4.35
1584 3528 2.593026 TGAACAGGGGTGAACCAATTC 58.407 47.619 1.16 0.45 42.91 2.17
1595 3539 0.961753 GCAGGAAGTTTGAACAGGGG 59.038 55.000 0.00 0.00 0.00 4.79
1599 3543 1.761449 TGCAGCAGGAAGTTTGAACA 58.239 45.000 0.00 0.00 0.00 3.18
1600 3544 2.159254 TGTTGCAGCAGGAAGTTTGAAC 60.159 45.455 0.00 0.00 0.00 3.18
1601 3545 2.098614 TGTTGCAGCAGGAAGTTTGAA 58.901 42.857 0.00 0.00 0.00 2.69
1602 3546 1.761449 TGTTGCAGCAGGAAGTTTGA 58.239 45.000 0.00 0.00 0.00 2.69
1603 3547 2.582728 TTGTTGCAGCAGGAAGTTTG 57.417 45.000 2.72 0.00 0.00 2.93
1606 3550 2.590821 AGAATTGTTGCAGCAGGAAGT 58.409 42.857 2.72 0.00 0.00 3.01
1607 3551 3.655276 AAGAATTGTTGCAGCAGGAAG 57.345 42.857 2.72 0.00 0.00 3.46
1619 3563 8.707839 CGTTACAATTAATGCCAAAAGAATTGT 58.292 29.630 13.83 13.83 46.79 2.71
1623 3567 6.982852 TCCGTTACAATTAATGCCAAAAGAA 58.017 32.000 0.00 0.00 0.00 2.52
1624 3568 6.576662 TCCGTTACAATTAATGCCAAAAGA 57.423 33.333 0.00 0.00 0.00 2.52
1625 3569 8.967218 CATATCCGTTACAATTAATGCCAAAAG 58.033 33.333 0.00 0.00 0.00 2.27
1627 3571 8.226819 TCATATCCGTTACAATTAATGCCAAA 57.773 30.769 0.00 0.00 0.00 3.28
1629 3573 7.255312 GGTTCATATCCGTTACAATTAATGCCA 60.255 37.037 0.00 0.00 0.00 4.92
1631 3575 6.795114 CGGTTCATATCCGTTACAATTAATGC 59.205 38.462 0.00 0.00 42.62 3.56
1635 3579 6.808829 AGTCGGTTCATATCCGTTACAATTA 58.191 36.000 4.36 0.00 46.86 1.40
1639 3583 4.883585 ACTAGTCGGTTCATATCCGTTACA 59.116 41.667 4.36 0.00 46.86 2.41
1640 3584 5.210715 CACTAGTCGGTTCATATCCGTTAC 58.789 45.833 0.00 0.00 46.86 2.50
1641 3585 4.276678 CCACTAGTCGGTTCATATCCGTTA 59.723 45.833 0.00 0.00 46.86 3.18
1642 3586 3.067742 CCACTAGTCGGTTCATATCCGTT 59.932 47.826 0.00 0.00 46.86 4.44
1643 3587 2.621998 CCACTAGTCGGTTCATATCCGT 59.378 50.000 0.00 0.00 46.86 4.69
1650 3594 0.968901 ATCGGCCACTAGTCGGTTCA 60.969 55.000 2.24 0.00 0.00 3.18
1654 3598 0.527817 GTTCATCGGCCACTAGTCGG 60.528 60.000 2.24 0.00 0.00 4.79
1655 3599 0.866061 CGTTCATCGGCCACTAGTCG 60.866 60.000 2.24 0.00 35.71 4.18
1701 3649 6.500589 AATGTATTAGAGGTAGGTGCATGT 57.499 37.500 0.00 0.00 0.00 3.21
1702 3650 6.428159 GGAAATGTATTAGAGGTAGGTGCATG 59.572 42.308 0.00 0.00 0.00 4.06
1710 3658 8.840200 AACTGAGAGGAAATGTATTAGAGGTA 57.160 34.615 0.00 0.00 0.00 3.08
1718 3824 6.139679 TCCCAAAACTGAGAGGAAATGTAT 57.860 37.500 0.00 0.00 0.00 2.29
1719 3825 5.576563 TCCCAAAACTGAGAGGAAATGTA 57.423 39.130 0.00 0.00 0.00 2.29
1721 3827 5.789643 TTTCCCAAAACTGAGAGGAAATG 57.210 39.130 0.00 0.00 40.70 2.32
1725 3831 3.397618 TCCATTTCCCAAAACTGAGAGGA 59.602 43.478 0.00 0.00 0.00 3.71
1726 3832 3.766545 TCCATTTCCCAAAACTGAGAGG 58.233 45.455 0.00 0.00 0.00 3.69
1729 3835 3.575687 AGCTTCCATTTCCCAAAACTGAG 59.424 43.478 0.00 0.00 0.00 3.35
1732 3838 4.164030 ACAAAGCTTCCATTTCCCAAAACT 59.836 37.500 0.00 0.00 0.00 2.66
1733 3839 4.450976 ACAAAGCTTCCATTTCCCAAAAC 58.549 39.130 0.00 0.00 0.00 2.43
1740 3846 5.060662 GAGGGTAACAAAGCTTCCATTTC 57.939 43.478 0.00 0.00 39.74 2.17
1747 3853 4.722279 AGCTATAGGAGGGTAACAAAGCTT 59.278 41.667 1.04 0.00 34.26 3.74
1754 3860 4.556302 CGTCGAAAGCTATAGGAGGGTAAC 60.556 50.000 1.04 0.00 0.00 2.50
1765 3871 1.940613 GAATTGGGCGTCGAAAGCTAT 59.059 47.619 12.89 3.57 34.52 2.97
1768 3874 1.136774 GGAATTGGGCGTCGAAAGC 59.863 57.895 0.00 5.65 0.00 3.51
1769 3875 1.165270 AAGGAATTGGGCGTCGAAAG 58.835 50.000 0.00 0.00 0.00 2.62
1770 3876 1.611519 AAAGGAATTGGGCGTCGAAA 58.388 45.000 0.00 0.00 0.00 3.46
1772 3878 0.878416 CAAAAGGAATTGGGCGTCGA 59.122 50.000 0.00 0.00 0.00 4.20
1773 3879 0.596082 ACAAAAGGAATTGGGCGTCG 59.404 50.000 0.00 0.00 34.56 5.12
1776 3882 2.817258 TCAGTACAAAAGGAATTGGGCG 59.183 45.455 0.00 0.00 34.56 6.13
1777 3883 3.367395 GCTCAGTACAAAAGGAATTGGGC 60.367 47.826 0.00 0.00 34.56 5.36
1778 3884 4.082125 AGCTCAGTACAAAAGGAATTGGG 58.918 43.478 0.00 0.00 34.56 4.12
1779 3885 5.163713 GCTAGCTCAGTACAAAAGGAATTGG 60.164 44.000 7.70 0.00 34.56 3.16
1780 3886 5.645497 AGCTAGCTCAGTACAAAAGGAATTG 59.355 40.000 12.68 0.00 36.37 2.32
1781 3887 5.810095 AGCTAGCTCAGTACAAAAGGAATT 58.190 37.500 12.68 0.00 0.00 2.17
1782 3888 5.428184 AGCTAGCTCAGTACAAAAGGAAT 57.572 39.130 12.68 0.00 0.00 3.01
1783 3889 4.891992 AGCTAGCTCAGTACAAAAGGAA 57.108 40.909 12.68 0.00 0.00 3.36
1784 3890 4.891992 AAGCTAGCTCAGTACAAAAGGA 57.108 40.909 19.65 0.00 0.00 3.36
1785 3891 5.948992 AAAAGCTAGCTCAGTACAAAAGG 57.051 39.130 19.65 0.00 0.00 3.11
1811 3917 9.095065 CGGTGTCTTAGTTAAATTACATAAGCT 57.905 33.333 0.00 0.00 0.00 3.74
1812 3918 8.333186 CCGGTGTCTTAGTTAAATTACATAAGC 58.667 37.037 0.00 0.00 0.00 3.09
1813 3919 9.374838 ACCGGTGTCTTAGTTAAATTACATAAG 57.625 33.333 6.12 0.00 0.00 1.73
1814 3920 9.723601 AACCGGTGTCTTAGTTAAATTACATAA 57.276 29.630 8.52 0.00 0.00 1.90
1815 3921 9.723601 AAACCGGTGTCTTAGTTAAATTACATA 57.276 29.630 8.52 0.00 0.00 2.29
1816 3922 8.625786 AAACCGGTGTCTTAGTTAAATTACAT 57.374 30.769 8.52 0.00 0.00 2.29
1817 3923 7.095691 CGAAACCGGTGTCTTAGTTAAATTACA 60.096 37.037 22.42 0.00 0.00 2.41
1818 3924 7.095649 ACGAAACCGGTGTCTTAGTTAAATTAC 60.096 37.037 22.42 0.00 0.00 1.89
1819 3925 6.928492 ACGAAACCGGTGTCTTAGTTAAATTA 59.072 34.615 22.42 0.00 0.00 1.40
1820 3926 5.759763 ACGAAACCGGTGTCTTAGTTAAATT 59.240 36.000 22.42 0.74 0.00 1.82
1821 3927 5.299949 ACGAAACCGGTGTCTTAGTTAAAT 58.700 37.500 22.42 0.00 0.00 1.40
1822 3928 4.692228 ACGAAACCGGTGTCTTAGTTAAA 58.308 39.130 22.42 0.00 0.00 1.52
1823 3929 4.320608 ACGAAACCGGTGTCTTAGTTAA 57.679 40.909 22.42 0.00 0.00 2.01
1824 3930 4.320608 AACGAAACCGGTGTCTTAGTTA 57.679 40.909 22.42 0.00 0.00 2.24
1825 3931 2.896745 ACGAAACCGGTGTCTTAGTT 57.103 45.000 22.42 3.98 0.00 2.24
1826 3932 2.896745 AACGAAACCGGTGTCTTAGT 57.103 45.000 22.42 10.40 0.00 2.24
1827 3933 4.925054 TCATTAACGAAACCGGTGTCTTAG 59.075 41.667 22.42 9.74 0.00 2.18
1828 3934 4.880759 TCATTAACGAAACCGGTGTCTTA 58.119 39.130 22.42 15.69 0.00 2.10
1829 3935 3.731089 TCATTAACGAAACCGGTGTCTT 58.269 40.909 22.42 16.61 0.00 3.01
1830 3936 3.389925 TCATTAACGAAACCGGTGTCT 57.610 42.857 22.42 7.48 0.00 3.41
1831 3937 4.471157 TTTCATTAACGAAACCGGTGTC 57.529 40.909 15.38 15.38 30.00 3.67
1832 3938 5.216648 CAATTTCATTAACGAAACCGGTGT 58.783 37.500 8.52 0.00 37.69 4.16
1833 3939 4.619336 CCAATTTCATTAACGAAACCGGTG 59.381 41.667 8.52 0.00 37.69 4.94
1834 3940 4.519730 TCCAATTTCATTAACGAAACCGGT 59.480 37.500 0.00 0.00 37.69 5.28
1835 3941 5.049398 TCCAATTTCATTAACGAAACCGG 57.951 39.130 0.00 0.00 37.69 5.28
1836 3942 5.933790 TCTCCAATTTCATTAACGAAACCG 58.066 37.500 0.00 0.00 37.69 4.44
1837 3943 7.021790 GTCTCTCCAATTTCATTAACGAAACC 58.978 38.462 0.00 0.00 37.69 3.27
1838 3944 7.581476 TGTCTCTCCAATTTCATTAACGAAAC 58.419 34.615 0.00 0.00 37.69 2.78
1839 3945 7.573096 GCTGTCTCTCCAATTTCATTAACGAAA 60.573 37.037 0.00 0.00 39.13 3.46
1840 3946 6.128282 GCTGTCTCTCCAATTTCATTAACGAA 60.128 38.462 0.00 0.00 0.00 3.85
1841 3947 5.351465 GCTGTCTCTCCAATTTCATTAACGA 59.649 40.000 0.00 0.00 0.00 3.85
1842 3948 5.352569 AGCTGTCTCTCCAATTTCATTAACG 59.647 40.000 0.00 0.00 0.00 3.18
1843 3949 6.597280 AGAGCTGTCTCTCCAATTTCATTAAC 59.403 38.462 0.00 0.00 46.32 2.01
1844 3950 6.715280 AGAGCTGTCTCTCCAATTTCATTAA 58.285 36.000 0.00 0.00 46.32 1.40
1845 3951 6.305272 AGAGCTGTCTCTCCAATTTCATTA 57.695 37.500 0.00 0.00 46.32 1.90
1846 3952 5.176741 AGAGCTGTCTCTCCAATTTCATT 57.823 39.130 0.00 0.00 46.32 2.57
1847 3953 4.840716 AGAGCTGTCTCTCCAATTTCAT 57.159 40.909 0.00 0.00 46.32 2.57
1859 3965 5.304101 TCTTCTTCTGAAAAGAGAGCTGTCT 59.696 40.000 7.74 7.74 34.86 3.41
1860 3966 5.537188 TCTTCTTCTGAAAAGAGAGCTGTC 58.463 41.667 1.81 1.81 0.00 3.51
1861 3967 5.543507 TCTTCTTCTGAAAAGAGAGCTGT 57.456 39.130 0.00 0.00 0.00 4.40
1862 3968 6.857777 TTTCTTCTTCTGAAAAGAGAGCTG 57.142 37.500 0.00 0.00 33.32 4.24
1863 3969 7.872113 TTTTTCTTCTTCTGAAAAGAGAGCT 57.128 32.000 11.83 0.00 42.12 4.09
1864 3970 8.348507 TGATTTTTCTTCTTCTGAAAAGAGAGC 58.651 33.333 11.83 8.16 42.12 4.09
1865 3971 9.662545 GTGATTTTTCTTCTTCTGAAAAGAGAG 57.337 33.333 11.83 0.00 42.12 3.20
1866 3972 8.624776 GGTGATTTTTCTTCTTCTGAAAAGAGA 58.375 33.333 11.83 7.66 42.12 3.10
1867 3973 8.408601 TGGTGATTTTTCTTCTTCTGAAAAGAG 58.591 33.333 11.83 3.07 42.12 2.85
1868 3974 8.292444 TGGTGATTTTTCTTCTTCTGAAAAGA 57.708 30.769 9.46 9.46 42.12 2.52
1869 3975 8.811378 GTTGGTGATTTTTCTTCTTCTGAAAAG 58.189 33.333 0.00 0.00 42.12 2.27
1870 3976 7.763985 GGTTGGTGATTTTTCTTCTTCTGAAAA 59.236 33.333 0.00 0.00 40.34 2.29
1871 3977 7.124147 AGGTTGGTGATTTTTCTTCTTCTGAAA 59.876 33.333 0.00 0.00 0.00 2.69
1872 3978 6.607198 AGGTTGGTGATTTTTCTTCTTCTGAA 59.393 34.615 0.00 0.00 0.00 3.02
1873 3979 6.129179 AGGTTGGTGATTTTTCTTCTTCTGA 58.871 36.000 0.00 0.00 0.00 3.27
1874 3980 6.264067 AGAGGTTGGTGATTTTTCTTCTTCTG 59.736 38.462 0.00 0.00 0.00 3.02
1875 3981 6.368805 AGAGGTTGGTGATTTTTCTTCTTCT 58.631 36.000 0.00 0.00 0.00 2.85
1876 3982 6.641169 AGAGGTTGGTGATTTTTCTTCTTC 57.359 37.500 0.00 0.00 0.00 2.87
1877 3983 8.712228 ATTAGAGGTTGGTGATTTTTCTTCTT 57.288 30.769 0.00 0.00 0.00 2.52
1878 3984 9.981460 ATATTAGAGGTTGGTGATTTTTCTTCT 57.019 29.630 0.00 0.00 0.00 2.85
1880 3986 9.981460 AGATATTAGAGGTTGGTGATTTTTCTT 57.019 29.630 0.00 0.00 0.00 2.52
1887 3993 9.661954 TCTCTTTAGATATTAGAGGTTGGTGAT 57.338 33.333 0.00 0.00 36.81 3.06
1888 3994 9.488762 TTCTCTTTAGATATTAGAGGTTGGTGA 57.511 33.333 0.00 0.00 36.81 4.02
1945 4051 0.743688 AACAACACGATGGCAAAGCA 59.256 45.000 0.00 0.00 0.00 3.91
1950 4056 0.107643 TCTCCAACAACACGATGGCA 59.892 50.000 0.00 0.00 37.47 4.92
1952 4058 2.420022 GGATTCTCCAACAACACGATGG 59.580 50.000 0.00 0.00 38.91 3.51
1964 4073 5.411361 CACATAAACAAACTCGGATTCTCCA 59.589 40.000 0.00 0.00 35.91 3.86
1970 4079 4.699735 TGATGCACATAAACAAACTCGGAT 59.300 37.500 0.00 0.00 0.00 4.18
1986 4095 3.433615 GTCAAGTACTCAAGGTGATGCAC 59.566 47.826 0.00 0.00 0.00 4.57
2002 4111 8.943594 TGGGTAATTTTATTAAGGTGTCAAGT 57.056 30.769 0.00 0.00 0.00 3.16
2009 4118 9.697990 TTCGGTAATGGGTAATTTTATTAAGGT 57.302 29.630 0.00 0.00 0.00 3.50
2020 4129 5.137551 CCCTTCATTTCGGTAATGGGTAAT 58.862 41.667 7.38 0.00 43.19 1.89
2023 4132 2.357777 CCCCTTCATTTCGGTAATGGGT 60.358 50.000 7.38 0.00 43.19 4.51
2064 4174 3.452627 TCAGAAGCAATAGGAAGAGTCCC 59.547 47.826 0.00 0.00 46.30 4.46
2076 4186 4.391216 CGTGATCAGAACTTCAGAAGCAAT 59.609 41.667 10.33 0.00 0.00 3.56
2143 4253 1.375908 GAGCTGGACGTTGGCATCA 60.376 57.895 0.00 0.00 0.00 3.07
2253 4363 1.157870 CCGCACTCGTGGAACAAACT 61.158 55.000 0.00 0.00 46.55 2.66
2284 4394 3.181474 GGAATGGACTAGAAGAGAACGGG 60.181 52.174 0.00 0.00 0.00 5.28
2377 4487 2.035704 TGCAATGTTTCGAGGTGCAATT 59.964 40.909 7.73 0.00 41.95 2.32
2378 4488 1.612950 TGCAATGTTTCGAGGTGCAAT 59.387 42.857 7.73 0.00 41.95 3.56
2379 4489 1.028130 TGCAATGTTTCGAGGTGCAA 58.972 45.000 7.73 0.00 41.95 4.08
2402 4512 2.043652 CCCATGAAGCCACTGGGG 60.044 66.667 0.00 0.00 44.99 4.96
2420 4530 4.724279 AACCAACCCATCACTTTAGTCT 57.276 40.909 0.00 0.00 0.00 3.24
2582 4692 1.113788 AGACAGAGCTGCCTGAGATC 58.886 55.000 20.14 10.45 37.37 2.75
2583 4693 1.570803 AAGACAGAGCTGCCTGAGAT 58.429 50.000 20.14 3.22 37.59 2.75
2602 4712 4.255301 GGTGTTTTCGGTGTCACCATATA 58.745 43.478 21.91 1.93 46.44 0.86
2605 4715 1.314730 GGTGTTTTCGGTGTCACCAT 58.685 50.000 21.91 0.00 46.44 3.55
2700 4810 4.771590 TGCAGAGAACTGGCATAAAAAG 57.228 40.909 0.00 0.00 43.62 2.27
2701 4811 5.243507 TCAATGCAGAGAACTGGCATAAAAA 59.756 36.000 9.75 0.00 43.62 1.94
2702 4812 4.766373 TCAATGCAGAGAACTGGCATAAAA 59.234 37.500 9.75 0.07 43.62 1.52
2712 4822 6.211515 AGAACAAAACATCAATGCAGAGAAC 58.788 36.000 0.00 0.00 0.00 3.01
2809 4919 9.511272 AAGATGCTAGCATATCAATGTTATTCA 57.489 29.630 29.64 0.00 36.70 2.57
2881 4991 9.971922 CTTTTATTTCCACTCTTTGAACTGATT 57.028 29.630 0.00 0.00 0.00 2.57
3095 5208 4.092529 CACTAGCACATCAGTTACAAGCAG 59.907 45.833 0.00 0.00 0.00 4.24
3283 5397 7.083875 TGAAAATTACGGATTCATGTTCTCC 57.916 36.000 0.00 0.00 0.00 3.71
3320 5434 1.317613 TTTGCTCCTGTGCGACAATT 58.682 45.000 0.00 0.00 35.36 2.32
3387 5501 1.474077 AGGGCGAATCAGCAAAACATC 59.526 47.619 0.00 0.00 39.27 3.06
3404 5518 3.629398 GTCAAGAAGGAATGCACATAGGG 59.371 47.826 0.00 0.00 0.00 3.53
3446 5560 4.451435 GGTTAAAGAGAACAGCAGGTACAC 59.549 45.833 0.00 0.00 0.00 2.90
3575 5689 2.360475 GCCCCAGGTCAGAACTGC 60.360 66.667 10.33 0.00 34.65 4.40
3724 5838 8.283291 GTGGAAAATGTTAGTTACAGACAGAAG 58.717 37.037 0.00 0.00 40.83 2.85
3753 5867 5.294306 AGTGACCGCAATTGTCTATATTGTG 59.706 40.000 7.40 0.00 41.09 3.33
3864 5986 7.175641 AGGTGAAGAAAGACATGGAAATAACAG 59.824 37.037 0.00 0.00 0.00 3.16
4141 6264 6.645415 ACGTCATACTCCAAAACTTCTGTTAG 59.355 38.462 0.00 0.00 34.96 2.34
4143 6266 5.236478 CACGTCATACTCCAAAACTTCTGTT 59.764 40.000 0.00 0.00 38.16 3.16
4278 6401 9.817809 TTAATCATATCAACCAGTAAGTGAGAC 57.182 33.333 0.00 0.00 0.00 3.36
4312 6435 6.777526 TTTTTATCGCACTGAAATTTTGGG 57.222 33.333 0.00 0.00 0.00 4.12
4351 6476 0.761187 TGCTTGAGACCACTGCTCTT 59.239 50.000 0.00 0.00 33.57 2.85
4416 6567 7.181305 TGGATTGATGGTTCTGTAAGTAGGTTA 59.819 37.037 0.00 0.00 33.76 2.85
4490 6641 5.182001 CGAAGAAATTCAGGTGTGAAGGATT 59.818 40.000 0.00 0.00 45.96 3.01
4491 6642 4.697352 CGAAGAAATTCAGGTGTGAAGGAT 59.303 41.667 0.00 0.00 45.96 3.24
4532 6683 5.713389 TGCATGAAAGGATCTCATTTTCAGT 59.287 36.000 0.00 6.56 42.19 3.41
4563 6714 3.189287 CGAAATTCTCTTCCCACCAAGTG 59.811 47.826 0.00 0.00 0.00 3.16
4584 6735 0.941463 CGGGCGATTTCTCCTGATCG 60.941 60.000 1.70 1.70 45.81 3.69
4658 6834 3.565482 ACTATATGAACATGCTTTGGCGG 59.435 43.478 0.00 0.00 42.25 6.13
4659 6835 4.319766 GGACTATATGAACATGCTTTGGCG 60.320 45.833 0.00 0.00 42.25 5.69
4660 6836 4.022849 GGGACTATATGAACATGCTTTGGC 60.023 45.833 0.00 0.00 39.26 4.52
4661 6837 5.380043 AGGGACTATATGAACATGCTTTGG 58.620 41.667 0.00 0.00 36.02 3.28
4662 6838 6.543465 TCAAGGGACTATATGAACATGCTTTG 59.457 38.462 0.00 0.00 38.49 2.77
4663 6839 6.662755 TCAAGGGACTATATGAACATGCTTT 58.337 36.000 0.00 0.00 38.49 3.51
4664 6840 6.252599 TCAAGGGACTATATGAACATGCTT 57.747 37.500 0.00 0.00 38.49 3.91
4665 6841 5.894298 TCAAGGGACTATATGAACATGCT 57.106 39.130 0.00 0.00 38.49 3.79
4666 6842 6.942532 TTTCAAGGGACTATATGAACATGC 57.057 37.500 0.00 0.00 38.49 4.06
4667 6843 8.279970 TGTTTTCAAGGGACTATATGAACATG 57.720 34.615 0.00 0.00 38.49 3.21
4704 6880 2.256117 TGCATCATCAGCTCAGGATG 57.744 50.000 7.98 7.98 42.73 3.51
4777 6953 2.340809 TTGCAGCACAGGCAATGC 59.659 55.556 0.00 0.00 45.57 3.56
4798 6974 4.381398 CCCTCAGAACTATATCAGATGGCG 60.381 50.000 0.00 0.00 0.00 5.69
4975 7194 6.757897 TGTAATCTAGTGGCCAAGAATTTG 57.242 37.500 7.24 0.00 0.00 2.32
5042 7343 1.139853 AGTACTGCCCTATCTGCTTGC 59.860 52.381 0.00 0.00 0.00 4.01
5071 7372 4.965532 ACTGAAGGTCAAGGATGCTAGTAT 59.034 41.667 0.00 0.00 0.00 2.12
5153 7454 5.281727 GGTGACCTGACAGAAATTTTTCAC 58.718 41.667 3.32 4.85 39.61 3.18
5216 7517 3.545703 CATAAGAAAGCTTCCGGACCAT 58.454 45.455 1.83 0.00 35.56 3.55
5232 7533 3.181487 CGGGTTTCCAAATGGAGCATAAG 60.181 47.826 1.86 0.00 46.36 1.73
5251 7552 4.760047 CACCGTTCCAGAGCCGGG 62.760 72.222 2.18 0.00 45.85 5.73
5284 7670 3.091633 ACACTTCCCCTCATCCAATTG 57.908 47.619 0.00 0.00 0.00 2.32
5446 7833 7.164122 TCCTCATTTGCCTGTATATCTTCATC 58.836 38.462 0.00 0.00 0.00 2.92
5504 7891 5.885912 TGGGAACATAAGAGGCTTTCAATAC 59.114 40.000 0.00 0.00 33.40 1.89
5573 7961 5.449177 GCATATGTTGTCCTTAAAGGTCAGC 60.449 44.000 4.29 0.00 35.00 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.