Multiple sequence alignment - TraesCS6B01G061500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G061500 chr6B 100.000 4089 0 0 1 4089 40794070 40789982 0.000000e+00 7552.0
1 TraesCS6B01G061500 chr6B 93.983 1047 29 9 2779 3795 40715855 40714813 0.000000e+00 1554.0
2 TraesCS6B01G061500 chr6B 88.889 936 78 11 316 1230 40659531 40658601 0.000000e+00 1129.0
3 TraesCS6B01G061500 chr6B 87.728 823 85 14 1434 2244 632586010 632585192 0.000000e+00 946.0
4 TraesCS6B01G061500 chr6B 89.091 715 61 6 2774 3472 41228120 41227407 0.000000e+00 872.0
5 TraesCS6B01G061500 chr6B 96.466 481 17 0 2264 2744 40716464 40715984 0.000000e+00 795.0
6 TraesCS6B01G061500 chr6B 91.919 495 20 5 2264 2758 40657946 40657472 0.000000e+00 675.0
7 TraesCS6B01G061500 chr6B 89.956 458 26 11 3354 3797 40657093 40656642 1.270000e-159 573.0
8 TraesCS6B01G061500 chr6B 83.884 484 74 4 2271 2753 41228590 41228110 3.720000e-125 459.0
9 TraesCS6B01G061500 chr6B 94.932 296 3 2 3794 4089 40714773 40714490 1.730000e-123 453.0
10 TraesCS6B01G061500 chr6B 83.702 497 21 23 3636 4089 41227397 41226918 8.180000e-112 414.0
11 TraesCS6B01G061500 chr6B 89.846 325 17 3 2774 3083 40657487 40657164 1.770000e-108 403.0
12 TraesCS6B01G061500 chr6B 89.262 298 14 6 3794 4089 40656604 40656323 1.400000e-94 357.0
13 TraesCS6B01G061500 chr6B 78.378 481 96 7 2278 2754 14311686 14312162 5.130000e-79 305.0
14 TraesCS6B01G061500 chr6B 80.952 378 62 9 2385 2757 13933412 13933040 1.440000e-74 291.0
15 TraesCS6B01G061500 chr6B 75.870 460 101 10 2269 2723 14341003 14341457 4.110000e-55 226.0
16 TraesCS6B01G061500 chr6B 82.533 229 37 2 2794 3019 14341497 14341725 8.970000e-47 198.0
17 TraesCS6B01G061500 chr6B 95.902 122 4 1 1312 1433 40658521 40658401 3.220000e-46 196.0
18 TraesCS6B01G061500 chr6B 79.602 201 35 5 2790 2988 14621700 14621504 5.510000e-29 139.0
19 TraesCS6B01G061500 chr6B 86.250 80 7 3 690 765 214872009 214871930 2.620000e-12 84.2
20 TraesCS6B01G061500 chr6D 91.218 1002 64 8 316 1294 24600347 24601347 0.000000e+00 1341.0
21 TraesCS6B01G061500 chr6D 88.394 1077 66 14 2774 3797 25017734 25016664 0.000000e+00 1242.0
22 TraesCS6B01G061500 chr6D 88.004 942 67 19 2774 3677 25299849 25298916 0.000000e+00 1072.0
23 TraesCS6B01G061500 chr6D 85.461 791 44 26 543 1294 25019631 25018873 0.000000e+00 758.0
24 TraesCS6B01G061500 chr6D 93.686 491 24 3 2264 2754 25018206 25017723 0.000000e+00 728.0
25 TraesCS6B01G061500 chr6D 85.139 720 52 27 3395 4089 24601655 24602344 0.000000e+00 686.0
26 TraesCS6B01G061500 chr6D 90.101 495 47 1 2264 2758 25300326 25299834 3.450000e-180 641.0
27 TraesCS6B01G061500 chr6D 82.405 449 77 2 2278 2725 7404421 7403974 1.380000e-104 390.0
28 TraesCS6B01G061500 chr6D 90.638 235 16 3 316 545 25021022 25020789 1.430000e-79 307.0
29 TraesCS6B01G061500 chr6D 80.115 347 57 10 2385 2725 16369633 16369973 8.780000e-62 248.0
30 TraesCS6B01G061500 chr6D 81.350 311 50 7 3493 3797 7413702 7413394 3.160000e-61 246.0
31 TraesCS6B01G061500 chr6D 82.129 263 43 3 3334 3592 7963507 7963769 5.320000e-54 222.0
32 TraesCS6B01G061500 chr6D 75.824 455 94 13 2277 2723 7729171 7729617 2.480000e-52 217.0
33 TraesCS6B01G061500 chr6D 75.520 433 102 4 2295 2725 34018023 34018453 4.140000e-50 209.0
34 TraesCS6B01G061500 chr6D 83.796 216 32 2 2794 3006 7729657 7729872 6.930000e-48 202.0
35 TraesCS6B01G061500 chr6D 94.262 122 7 0 1312 1433 25018791 25018670 1.940000e-43 187.0
36 TraesCS6B01G061500 chr6D 91.912 136 5 2 1159 1294 25302736 25302607 6.980000e-43 185.0
37 TraesCS6B01G061500 chr6D 95.699 93 4 0 1338 1430 24601417 24601509 2.550000e-32 150.0
38 TraesCS6B01G061500 chr6D 80.423 189 21 8 3794 3973 7903590 7903771 3.320000e-26 130.0
39 TraesCS6B01G061500 chr6D 78.173 197 39 3 2793 2988 7993220 7993027 5.550000e-24 122.0
40 TraesCS6B01G061500 chr6D 89.062 64 6 1 678 740 144591446 144591509 1.220000e-10 78.7
41 TraesCS6B01G061500 chr6D 93.750 48 3 0 692 739 52011285 52011238 5.670000e-09 73.1
42 TraesCS6B01G061500 chr6D 93.617 47 3 0 693 739 808304 808258 2.040000e-08 71.3
43 TraesCS6B01G061500 chr6D 93.023 43 2 1 4045 4086 7903845 7903887 1.230000e-05 62.1
44 TraesCS6B01G061500 chr5B 89.480 827 78 7 1424 2244 308797852 308798675 0.000000e+00 1037.0
45 TraesCS6B01G061500 chr5B 80.292 137 21 5 1013 1147 490615633 490615765 9.350000e-17 99.0
46 TraesCS6B01G061500 chr5B 79.412 136 22 3 1004 1139 88785405 88785534 1.570000e-14 91.6
47 TraesCS6B01G061500 chr6A 85.434 1071 71 34 3088 4089 23229278 23230332 0.000000e+00 1035.0
48 TraesCS6B01G061500 chr6A 85.683 915 74 15 562 1433 23227420 23228320 0.000000e+00 911.0
49 TraesCS6B01G061500 chr6A 80.499 441 78 6 2269 2705 7300337 7299901 8.470000e-87 331.0
50 TraesCS6B01G061500 chr6A 88.846 260 14 2 2838 3082 23228912 23229171 5.130000e-79 305.0
51 TraesCS6B01G061500 chr6A 77.615 478 95 10 2277 2748 8175521 8175992 3.110000e-71 279.0
52 TraesCS6B01G061500 chr6A 78.076 447 74 11 2278 2723 7224152 7223729 1.130000e-65 261.0
53 TraesCS6B01G061500 chr6A 91.579 190 12 1 322 507 23227235 23227424 4.050000e-65 259.0
54 TraesCS6B01G061500 chr6A 76.809 470 93 14 2264 2725 16629541 16630002 2.440000e-62 250.0
55 TraesCS6B01G061500 chr6A 94.161 137 8 0 2264 2400 23228775 23228911 4.140000e-50 209.0
56 TraesCS6B01G061500 chr6A 79.188 197 39 2 2793 2988 8201283 8201088 7.130000e-28 135.0
57 TraesCS6B01G061500 chr6A 88.889 72 7 1 693 764 115494741 115494671 2.020000e-13 87.9
58 TraesCS6B01G061500 chr6A 88.889 72 7 1 693 764 115526929 115526859 2.020000e-13 87.9
59 TraesCS6B01G061500 chr6A 94.118 51 3 0 690 740 37459182 37459132 1.220000e-10 78.7
60 TraesCS6B01G061500 chr7D 89.076 833 79 11 1430 2254 566125754 566124926 0.000000e+00 1024.0
61 TraesCS6B01G061500 chr7D 89.238 827 76 12 1424 2244 2919902 2920721 0.000000e+00 1022.0
62 TraesCS6B01G061500 chr7D 89.133 819 78 9 1430 2242 496334267 496335080 0.000000e+00 1009.0
63 TraesCS6B01G061500 chr7D 91.429 70 5 1 693 761 25043200 25043131 1.210000e-15 95.3
64 TraesCS6B01G061500 chr4D 88.540 829 73 14 1424 2244 13255609 13256423 0.000000e+00 985.0
65 TraesCS6B01G061500 chr4D 76.730 159 29 6 3515 3671 449973452 449973300 9.420000e-12 82.4
66 TraesCS6B01G061500 chr4D 95.556 45 2 0 692 736 54727224 54727268 5.670000e-09 73.1
67 TraesCS6B01G061500 chr4D 93.878 49 2 1 693 740 383775652 383775604 5.670000e-09 73.1
68 TraesCS6B01G061500 chr4D 91.667 48 4 0 693 740 70944350 70944303 2.640000e-07 67.6
69 TraesCS6B01G061500 chr4D 91.667 48 4 0 693 740 440380502 440380455 2.640000e-07 67.6
70 TraesCS6B01G061500 chr4D 91.489 47 4 0 693 739 24864776 24864730 9.490000e-07 65.8
71 TraesCS6B01G061500 chr7B 88.101 832 86 11 1424 2244 677396448 677397277 0.000000e+00 976.0
72 TraesCS6B01G061500 chr7B 77.363 455 91 9 2277 2725 623950788 623950340 4.050000e-65 259.0
73 TraesCS6B01G061500 chr7B 90.789 76 5 2 689 763 328137042 328137116 2.600000e-17 100.0
74 TraesCS6B01G061500 chr3B 88.164 828 82 13 1430 2244 393314901 393314077 0.000000e+00 972.0
75 TraesCS6B01G061500 chr3B 78.866 194 20 10 3794 3973 761045329 761045143 1.200000e-20 111.0
76 TraesCS6B01G061500 chr3B 86.441 59 8 0 3511 3569 761045739 761045681 9.490000e-07 65.8
77 TraesCS6B01G061500 chr3B 93.023 43 2 1 4045 4086 761045069 761045027 1.230000e-05 62.1
78 TraesCS6B01G061500 chr2B 87.077 828 89 14 1430 2242 798152875 798153699 0.000000e+00 920.0
79 TraesCS6B01G061500 chr2B 90.541 74 3 4 692 765 46878036 46878105 1.210000e-15 95.3
80 TraesCS6B01G061500 chr2B 90.476 63 2 4 1346 1406 89504141 89504201 3.390000e-11 80.5
81 TraesCS6B01G061500 chrUn 77.350 468 94 10 2264 2725 76386844 76386383 2.420000e-67 267.0
82 TraesCS6B01G061500 chrUn 79.412 136 22 3 1004 1139 228575607 228575736 1.570000e-14 91.6
83 TraesCS6B01G061500 chrUn 79.412 136 22 3 1004 1139 330647237 330647108 1.570000e-14 91.6
84 TraesCS6B01G061500 chrUn 95.556 45 2 0 696 740 253327869 253327825 5.670000e-09 73.1
85 TraesCS6B01G061500 chrUn 84.746 59 9 0 1348 1406 102006623 102006565 4.410000e-05 60.2
86 TraesCS6B01G061500 chr2A 82.895 304 44 7 3500 3797 16649542 16649241 2.420000e-67 267.0
87 TraesCS6B01G061500 chr1D 86.822 129 17 0 2791 2919 477166721 477166849 1.180000e-30 145.0
88 TraesCS6B01G061500 chr1D 93.878 49 2 1 693 740 28960922 28960970 5.670000e-09 73.1
89 TraesCS6B01G061500 chr1B 86.822 129 17 0 2791 2919 664762645 664762773 1.180000e-30 145.0
90 TraesCS6B01G061500 chr1A 86.822 129 17 0 2791 2919 573207161 573207289 1.180000e-30 145.0
91 TraesCS6B01G061500 chr1A 84.058 69 9 2 693 761 85036549 85036615 9.490000e-07 65.8
92 TraesCS6B01G061500 chr5D 82.906 117 17 3 1024 1139 79127134 79127248 7.230000e-18 102.0
93 TraesCS6B01G061500 chr5D 95.833 48 2 0 693 740 180472059 180472106 1.220000e-10 78.7
94 TraesCS6B01G061500 chr5D 97.778 45 1 0 696 740 301216205 301216161 1.220000e-10 78.7
95 TraesCS6B01G061500 chr5D 94.000 50 3 0 691 740 107561832 107561881 4.380000e-10 76.8
96 TraesCS6B01G061500 chr5D 86.154 65 7 2 678 740 13312001 13311937 7.330000e-08 69.4
97 TraesCS6B01G061500 chr5A 89.855 69 6 1 693 761 45703362 45703429 2.020000e-13 87.9
98 TraesCS6B01G061500 chr5A 77.941 136 25 2 1004 1139 75062913 75063043 3.390000e-11 80.5
99 TraesCS6B01G061500 chr3D 86.667 75 7 3 693 767 580413184 580413113 3.390000e-11 80.5
100 TraesCS6B01G061500 chr2D 95.833 48 2 0 693 740 206682757 206682710 1.220000e-10 78.7
101 TraesCS6B01G061500 chr2D 85.915 71 5 5 692 761 495046994 495046928 2.040000e-08 71.3
102 TraesCS6B01G061500 chr4B 88.060 67 4 1 692 758 109408533 109408595 4.380000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G061500 chr6B 40789982 40794070 4088 True 7552.000000 7552 100.000000 1 4089 1 chr6B.!!$R3 4088
1 TraesCS6B01G061500 chr6B 632585192 632586010 818 True 946.000000 946 87.728000 1434 2244 1 chr6B.!!$R5 810
2 TraesCS6B01G061500 chr6B 40714490 40716464 1974 True 934.000000 1554 95.127000 2264 4089 3 chr6B.!!$R7 1825
3 TraesCS6B01G061500 chr6B 41226918 41228590 1672 True 581.666667 872 85.559000 2271 4089 3 chr6B.!!$R8 1818
4 TraesCS6B01G061500 chr6B 40656323 40659531 3208 True 555.500000 1129 90.962333 316 4089 6 chr6B.!!$R6 3773
5 TraesCS6B01G061500 chr6B 14341003 14341725 722 False 212.000000 226 79.201500 2269 3019 2 chr6B.!!$F2 750
6 TraesCS6B01G061500 chr6D 24600347 24602344 1997 False 725.666667 1341 90.685333 316 4089 3 chr6D.!!$F7 3773
7 TraesCS6B01G061500 chr6D 25016664 25021022 4358 True 644.400000 1242 90.488200 316 3797 5 chr6D.!!$R6 3481
8 TraesCS6B01G061500 chr6D 25298916 25302736 3820 True 632.666667 1072 90.005667 1159 3677 3 chr6D.!!$R7 2518
9 TraesCS6B01G061500 chr6D 7729171 7729872 701 False 209.500000 217 79.810000 2277 3006 2 chr6D.!!$F5 729
10 TraesCS6B01G061500 chr5B 308797852 308798675 823 False 1037.000000 1037 89.480000 1424 2244 1 chr5B.!!$F2 820
11 TraesCS6B01G061500 chr6A 23227235 23230332 3097 False 543.800000 1035 89.140600 322 4089 5 chr6A.!!$F3 3767
12 TraesCS6B01G061500 chr7D 566124926 566125754 828 True 1024.000000 1024 89.076000 1430 2254 1 chr7D.!!$R2 824
13 TraesCS6B01G061500 chr7D 2919902 2920721 819 False 1022.000000 1022 89.238000 1424 2244 1 chr7D.!!$F1 820
14 TraesCS6B01G061500 chr7D 496334267 496335080 813 False 1009.000000 1009 89.133000 1430 2242 1 chr7D.!!$F2 812
15 TraesCS6B01G061500 chr4D 13255609 13256423 814 False 985.000000 985 88.540000 1424 2244 1 chr4D.!!$F1 820
16 TraesCS6B01G061500 chr7B 677396448 677397277 829 False 976.000000 976 88.101000 1424 2244 1 chr7B.!!$F2 820
17 TraesCS6B01G061500 chr3B 393314077 393314901 824 True 972.000000 972 88.164000 1430 2244 1 chr3B.!!$R1 814
18 TraesCS6B01G061500 chr2B 798152875 798153699 824 False 920.000000 920 87.077000 1430 2242 1 chr2B.!!$F3 812

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
234 235 0.102300 GGTTGTTCAACGCTTTGGCT 59.898 50.0 2.78 0.0 36.09 4.75 F
634 1799 0.179059 TCTGCCAGTGCTTTCGTTCA 60.179 50.0 0.00 0.0 38.71 3.18 F
1733 4671 0.467290 CGGGAGAGGAAGAGAGAGGG 60.467 65.0 0.00 0.0 0.00 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1917 4899 1.103398 CCATTGATTCCTCACGGGCC 61.103 60.0 0.00 0.0 34.39 5.80 R
2576 5754 0.108424 GGAACTCAGATCTGCGCTGT 60.108 55.0 18.36 10.6 34.98 4.40 R
3158 6550 0.240945 GGCATGTTCCCACACTTTCG 59.759 55.0 0.00 0.0 35.03 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 4.900635 TTTTCCAGAGCAGAGTGTTTTC 57.099 40.909 0.00 0.00 0.00 2.29
32 33 3.845781 TTCCAGAGCAGAGTGTTTTCT 57.154 42.857 0.00 0.00 0.00 2.52
33 34 3.845781 TCCAGAGCAGAGTGTTTTCTT 57.154 42.857 0.00 0.00 0.00 2.52
34 35 4.156455 TCCAGAGCAGAGTGTTTTCTTT 57.844 40.909 0.00 0.00 0.00 2.52
35 36 4.130118 TCCAGAGCAGAGTGTTTTCTTTC 58.870 43.478 0.00 0.00 0.00 2.62
36 37 4.133078 CCAGAGCAGAGTGTTTTCTTTCT 58.867 43.478 0.00 0.00 0.00 2.52
37 38 4.578105 CCAGAGCAGAGTGTTTTCTTTCTT 59.422 41.667 0.00 0.00 0.00 2.52
38 39 5.277731 CCAGAGCAGAGTGTTTTCTTTCTTC 60.278 44.000 0.00 0.00 0.00 2.87
39 40 5.526846 CAGAGCAGAGTGTTTTCTTTCTTCT 59.473 40.000 0.00 0.00 0.00 2.85
40 41 5.757808 AGAGCAGAGTGTTTTCTTTCTTCTC 59.242 40.000 0.00 0.00 32.45 2.87
41 42 4.509600 AGCAGAGTGTTTTCTTTCTTCTCG 59.490 41.667 0.00 0.00 0.00 4.04
42 43 4.508124 GCAGAGTGTTTTCTTTCTTCTCGA 59.492 41.667 0.00 0.00 0.00 4.04
43 44 5.178438 GCAGAGTGTTTTCTTTCTTCTCGAT 59.822 40.000 0.00 0.00 0.00 3.59
44 45 6.366332 GCAGAGTGTTTTCTTTCTTCTCGATA 59.634 38.462 0.00 0.00 0.00 2.92
45 46 7.095607 GCAGAGTGTTTTCTTTCTTCTCGATAA 60.096 37.037 0.00 0.00 0.00 1.75
46 47 8.765219 CAGAGTGTTTTCTTTCTTCTCGATAAA 58.235 33.333 0.00 0.00 0.00 1.40
47 48 8.983724 AGAGTGTTTTCTTTCTTCTCGATAAAG 58.016 33.333 2.13 2.13 0.00 1.85
48 49 8.888579 AGTGTTTTCTTTCTTCTCGATAAAGA 57.111 30.769 6.35 6.35 37.44 2.52
49 50 9.326413 AGTGTTTTCTTTCTTCTCGATAAAGAA 57.674 29.630 15.42 15.42 43.73 2.52
57 58 9.818796 CTTTCTTCTCGATAAAGAAAAGAAAGG 57.181 33.333 24.44 14.65 46.50 3.11
58 59 7.365840 TCTTCTCGATAAAGAAAAGAAAGGC 57.634 36.000 7.68 0.00 34.95 4.35
59 60 6.934645 TCTTCTCGATAAAGAAAAGAAAGGCA 59.065 34.615 7.68 0.00 34.95 4.75
60 61 7.444183 TCTTCTCGATAAAGAAAAGAAAGGCAA 59.556 33.333 7.68 0.00 34.95 4.52
61 62 7.687941 TCTCGATAAAGAAAAGAAAGGCAAT 57.312 32.000 0.00 0.00 0.00 3.56
62 63 7.752695 TCTCGATAAAGAAAAGAAAGGCAATC 58.247 34.615 0.00 0.00 0.00 2.67
63 64 7.607991 TCTCGATAAAGAAAAGAAAGGCAATCT 59.392 33.333 0.00 0.00 0.00 2.40
64 65 7.752695 TCGATAAAGAAAAGAAAGGCAATCTC 58.247 34.615 0.00 0.00 0.00 2.75
65 66 7.390440 TCGATAAAGAAAAGAAAGGCAATCTCA 59.610 33.333 0.00 0.00 0.00 3.27
66 67 7.483059 CGATAAAGAAAAGAAAGGCAATCTCAC 59.517 37.037 0.00 0.00 0.00 3.51
67 68 5.459536 AAGAAAAGAAAGGCAATCTCACC 57.540 39.130 0.00 0.00 0.00 4.02
68 69 3.503748 AGAAAAGAAAGGCAATCTCACCG 59.496 43.478 0.00 0.00 0.00 4.94
69 70 2.859165 AAGAAAGGCAATCTCACCGA 57.141 45.000 0.00 0.00 0.00 4.69
70 71 2.393271 AGAAAGGCAATCTCACCGAG 57.607 50.000 0.00 0.00 0.00 4.63
71 72 1.902508 AGAAAGGCAATCTCACCGAGA 59.097 47.619 0.00 0.00 43.20 4.04
72 73 2.093764 AGAAAGGCAATCTCACCGAGAG 60.094 50.000 0.00 0.00 42.26 3.20
80 81 4.004348 TCACCGAGAGAGACCAGC 57.996 61.111 0.00 0.00 0.00 4.85
81 82 1.679305 TCACCGAGAGAGACCAGCC 60.679 63.158 0.00 0.00 0.00 4.85
82 83 1.680651 CACCGAGAGAGACCAGCCT 60.681 63.158 0.00 0.00 0.00 4.58
83 84 1.379309 ACCGAGAGAGACCAGCCTC 60.379 63.158 0.00 0.00 0.00 4.70
84 85 2.124693 CCGAGAGAGACCAGCCTCC 61.125 68.421 0.00 0.00 33.76 4.30
85 86 2.124693 CGAGAGAGACCAGCCTCCC 61.125 68.421 0.00 0.00 33.76 4.30
86 87 1.000993 GAGAGAGACCAGCCTCCCA 59.999 63.158 0.00 0.00 33.76 4.37
87 88 1.001503 AGAGAGACCAGCCTCCCAG 59.998 63.158 0.00 0.00 33.76 4.45
88 89 1.305718 GAGAGACCAGCCTCCCAGT 60.306 63.158 0.00 0.00 33.76 4.00
89 90 1.611851 AGAGACCAGCCTCCCAGTG 60.612 63.158 0.00 0.00 33.76 3.66
90 91 3.322318 GAGACCAGCCTCCCAGTGC 62.322 68.421 0.00 0.00 0.00 4.40
91 92 4.416738 GACCAGCCTCCCAGTGCC 62.417 72.222 0.00 0.00 0.00 5.01
94 95 4.767255 CAGCCTCCCAGTGCCGTC 62.767 72.222 0.00 0.00 0.00 4.79
97 98 3.322466 CCTCCCAGTGCCGTCCTT 61.322 66.667 0.00 0.00 0.00 3.36
98 99 2.266055 CTCCCAGTGCCGTCCTTC 59.734 66.667 0.00 0.00 0.00 3.46
99 100 3.649277 CTCCCAGTGCCGTCCTTCG 62.649 68.421 0.00 0.00 39.52 3.79
108 109 4.856607 CGTCCTTCGGCGGCTCTC 62.857 72.222 7.21 0.00 35.71 3.20
109 110 4.516195 GTCCTTCGGCGGCTCTCC 62.516 72.222 7.21 0.00 0.00 3.71
121 122 4.477975 CTCTCCGCCACCGACGAC 62.478 72.222 0.00 0.00 36.29 4.34
126 127 4.477975 CGCCACCGACGACCTCTC 62.478 72.222 0.00 0.00 36.29 3.20
127 128 4.477975 GCCACCGACGACCTCTCG 62.478 72.222 0.00 0.00 46.06 4.04
137 138 2.435219 ACCTCTCGGTCGGTCTGT 59.565 61.111 0.00 0.00 40.27 3.41
138 139 1.674980 ACCTCTCGGTCGGTCTGTC 60.675 63.158 0.00 0.00 40.27 3.51
139 140 2.751913 CCTCTCGGTCGGTCTGTCG 61.752 68.421 0.00 0.00 0.00 4.35
140 141 2.031616 TCTCGGTCGGTCTGTCGT 59.968 61.111 0.00 0.00 0.00 4.34
141 142 2.176055 CTCGGTCGGTCTGTCGTG 59.824 66.667 0.00 0.00 0.00 4.35
142 143 2.281002 TCGGTCGGTCTGTCGTGA 60.281 61.111 0.00 0.00 0.00 4.35
143 144 2.176055 CGGTCGGTCTGTCGTGAG 59.824 66.667 0.00 0.00 0.00 3.51
144 145 2.322830 CGGTCGGTCTGTCGTGAGA 61.323 63.158 0.00 0.00 38.16 3.27
145 146 1.848932 CGGTCGGTCTGTCGTGAGAA 61.849 60.000 0.00 0.00 45.01 2.87
146 147 0.109689 GGTCGGTCTGTCGTGAGAAG 60.110 60.000 0.00 0.00 45.01 2.85
147 148 0.109689 GTCGGTCTGTCGTGAGAAGG 60.110 60.000 0.00 0.00 45.01 3.46
148 149 1.213013 CGGTCTGTCGTGAGAAGGG 59.787 63.158 0.00 0.00 45.01 3.95
149 150 1.079750 GGTCTGTCGTGAGAAGGGC 60.080 63.158 0.00 0.00 45.01 5.19
150 151 1.079750 GTCTGTCGTGAGAAGGGCC 60.080 63.158 0.00 0.00 45.01 5.80
151 152 2.125912 CTGTCGTGAGAAGGGCCG 60.126 66.667 0.00 0.00 45.01 6.13
152 153 4.373116 TGTCGTGAGAAGGGCCGC 62.373 66.667 0.00 0.00 45.01 6.53
156 157 3.706373 GTGAGAAGGGCCGCCAGA 61.706 66.667 12.58 0.00 0.00 3.86
157 158 2.688666 TGAGAAGGGCCGCCAGAT 60.689 61.111 12.58 0.00 0.00 2.90
158 159 1.382557 TGAGAAGGGCCGCCAGATA 60.383 57.895 12.58 0.00 0.00 1.98
159 160 1.069935 GAGAAGGGCCGCCAGATAC 59.930 63.158 12.58 0.00 0.00 2.24
160 161 2.111251 GAAGGGCCGCCAGATACC 59.889 66.667 12.58 0.00 0.00 2.73
161 162 3.809374 GAAGGGCCGCCAGATACCG 62.809 68.421 12.58 0.00 0.00 4.02
166 167 4.969196 CCGCCAGATACCGCGCAT 62.969 66.667 8.75 0.00 46.88 4.73
167 168 3.705638 CGCCAGATACCGCGCATG 61.706 66.667 8.75 0.00 42.17 4.06
168 169 4.017877 GCCAGATACCGCGCATGC 62.018 66.667 7.91 7.91 37.91 4.06
178 179 3.483665 GCGCATGCGGTTCACGTA 61.484 61.111 38.22 0.00 46.52 3.57
179 180 2.695055 CGCATGCGGTTCACGTAG 59.305 61.111 31.99 0.00 46.52 3.51
180 181 1.803922 CGCATGCGGTTCACGTAGA 60.804 57.895 31.99 0.00 46.52 2.59
181 182 1.145759 CGCATGCGGTTCACGTAGAT 61.146 55.000 31.99 0.00 46.52 1.98
182 183 1.006832 GCATGCGGTTCACGTAGATT 58.993 50.000 0.00 0.00 46.52 2.40
183 184 1.396996 GCATGCGGTTCACGTAGATTT 59.603 47.619 0.00 0.00 46.52 2.17
184 185 2.605818 GCATGCGGTTCACGTAGATTTA 59.394 45.455 0.00 0.00 46.52 1.40
185 186 3.302480 GCATGCGGTTCACGTAGATTTAG 60.302 47.826 0.00 0.00 46.52 1.85
186 187 3.581024 TGCGGTTCACGTAGATTTAGT 57.419 42.857 0.00 0.00 46.52 2.24
187 188 3.916761 TGCGGTTCACGTAGATTTAGTT 58.083 40.909 0.00 0.00 46.52 2.24
188 189 4.309099 TGCGGTTCACGTAGATTTAGTTT 58.691 39.130 0.00 0.00 46.52 2.66
189 190 4.751098 TGCGGTTCACGTAGATTTAGTTTT 59.249 37.500 0.00 0.00 46.52 2.43
190 191 5.236911 TGCGGTTCACGTAGATTTAGTTTTT 59.763 36.000 0.00 0.00 46.52 1.94
191 192 6.423302 TGCGGTTCACGTAGATTTAGTTTTTA 59.577 34.615 0.00 0.00 46.52 1.52
192 193 6.952083 GCGGTTCACGTAGATTTAGTTTTTAG 59.048 38.462 0.00 0.00 46.52 1.85
193 194 7.450627 CGGTTCACGTAGATTTAGTTTTTAGG 58.549 38.462 0.00 0.00 37.93 2.69
194 195 7.412237 CGGTTCACGTAGATTTAGTTTTTAGGG 60.412 40.741 0.00 0.00 37.93 3.53
195 196 6.973229 TCACGTAGATTTAGTTTTTAGGGC 57.027 37.500 0.00 0.00 0.00 5.19
196 197 5.876460 TCACGTAGATTTAGTTTTTAGGGCC 59.124 40.000 0.00 0.00 0.00 5.80
197 198 5.065602 CACGTAGATTTAGTTTTTAGGGCCC 59.934 44.000 16.46 16.46 0.00 5.80
198 199 5.045359 ACGTAGATTTAGTTTTTAGGGCCCT 60.045 40.000 31.35 31.35 0.00 5.19
199 200 6.156775 ACGTAGATTTAGTTTTTAGGGCCCTA 59.843 38.462 28.66 28.66 0.00 3.53
200 201 6.704937 CGTAGATTTAGTTTTTAGGGCCCTAG 59.295 42.308 30.23 10.14 0.00 3.02
201 202 6.653790 AGATTTAGTTTTTAGGGCCCTAGT 57.346 37.500 30.23 17.54 0.00 2.57
202 203 7.760400 AGATTTAGTTTTTAGGGCCCTAGTA 57.240 36.000 30.23 19.93 0.00 1.82
203 204 8.346247 AGATTTAGTTTTTAGGGCCCTAGTAT 57.654 34.615 30.23 17.93 0.00 2.12
204 205 8.438373 AGATTTAGTTTTTAGGGCCCTAGTATC 58.562 37.037 30.23 20.98 0.00 2.24
205 206 7.760400 TTTAGTTTTTAGGGCCCTAGTATCT 57.240 36.000 30.23 25.66 0.00 1.98
206 207 7.760400 TTAGTTTTTAGGGCCCTAGTATCTT 57.240 36.000 30.23 17.71 0.00 2.40
207 208 8.858944 TTAGTTTTTAGGGCCCTAGTATCTTA 57.141 34.615 30.23 17.79 0.00 2.10
208 209 7.376335 AGTTTTTAGGGCCCTAGTATCTTAG 57.624 40.000 30.23 0.00 0.00 2.18
209 210 7.137567 AGTTTTTAGGGCCCTAGTATCTTAGA 58.862 38.462 30.23 10.78 0.00 2.10
210 211 7.795171 AGTTTTTAGGGCCCTAGTATCTTAGAT 59.205 37.037 30.23 3.91 0.00 1.98
211 212 8.438373 GTTTTTAGGGCCCTAGTATCTTAGATT 58.562 37.037 30.23 3.43 0.00 2.40
212 213 8.577164 TTTTAGGGCCCTAGTATCTTAGATTT 57.423 34.615 30.23 2.70 0.00 2.17
213 214 8.577164 TTTAGGGCCCTAGTATCTTAGATTTT 57.423 34.615 30.23 2.28 0.00 1.82
214 215 6.441088 AGGGCCCTAGTATCTTAGATTTTG 57.559 41.667 27.42 0.00 0.00 2.44
215 216 5.310857 AGGGCCCTAGTATCTTAGATTTTGG 59.689 44.000 27.42 0.60 0.00 3.28
216 217 5.515008 GGGCCCTAGTATCTTAGATTTTGGG 60.515 48.000 17.04 15.85 0.00 4.12
217 218 5.073280 GGCCCTAGTATCTTAGATTTTGGGT 59.927 44.000 18.86 0.00 33.83 4.51
218 219 6.410504 GGCCCTAGTATCTTAGATTTTGGGTT 60.411 42.308 18.86 0.00 33.83 4.11
219 220 6.486993 GCCCTAGTATCTTAGATTTTGGGTTG 59.513 42.308 18.86 4.90 33.83 3.77
220 221 7.574607 CCCTAGTATCTTAGATTTTGGGTTGT 58.425 38.462 0.00 0.00 0.00 3.32
221 222 8.053355 CCCTAGTATCTTAGATTTTGGGTTGTT 58.947 37.037 0.00 0.00 0.00 2.83
222 223 9.110502 CCTAGTATCTTAGATTTTGGGTTGTTC 57.889 37.037 0.00 0.00 0.00 3.18
223 224 9.667107 CTAGTATCTTAGATTTTGGGTTGTTCA 57.333 33.333 0.00 0.00 0.00 3.18
224 225 8.934023 AGTATCTTAGATTTTGGGTTGTTCAA 57.066 30.769 0.00 0.00 0.00 2.69
225 226 8.793592 AGTATCTTAGATTTTGGGTTGTTCAAC 58.206 33.333 0.00 7.09 0.00 3.18
226 227 6.067263 TCTTAGATTTTGGGTTGTTCAACG 57.933 37.500 9.15 0.00 0.00 4.10
227 228 3.092334 AGATTTTGGGTTGTTCAACGC 57.908 42.857 20.49 20.49 36.32 4.84
228 229 2.693074 AGATTTTGGGTTGTTCAACGCT 59.307 40.909 24.95 11.31 36.67 5.07
229 230 3.132111 AGATTTTGGGTTGTTCAACGCTT 59.868 39.130 24.95 12.75 36.67 4.68
230 231 3.320673 TTTTGGGTTGTTCAACGCTTT 57.679 38.095 24.95 0.00 36.67 3.51
231 232 2.285827 TTGGGTTGTTCAACGCTTTG 57.714 45.000 24.95 0.00 36.67 2.77
232 233 0.457851 TGGGTTGTTCAACGCTTTGG 59.542 50.000 24.95 0.00 36.67 3.28
233 234 0.874175 GGGTTGTTCAACGCTTTGGC 60.874 55.000 20.17 0.00 33.06 4.52
234 235 0.102300 GGTTGTTCAACGCTTTGGCT 59.898 50.000 2.78 0.00 36.09 4.75
235 236 1.470805 GGTTGTTCAACGCTTTGGCTT 60.471 47.619 2.78 0.00 36.09 4.35
236 237 2.267426 GTTGTTCAACGCTTTGGCTTT 58.733 42.857 2.78 0.00 36.09 3.51
237 238 1.919918 TGTTCAACGCTTTGGCTTTG 58.080 45.000 2.78 1.65 45.29 2.77
238 239 1.208259 GTTCAACGCTTTGGCTTTGG 58.792 50.000 2.78 0.00 44.44 3.28
239 240 1.107114 TTCAACGCTTTGGCTTTGGA 58.893 45.000 2.78 0.00 44.44 3.53
240 241 0.667993 TCAACGCTTTGGCTTTGGAG 59.332 50.000 2.78 0.00 44.44 3.86
241 242 0.385390 CAACGCTTTGGCTTTGGAGT 59.615 50.000 0.00 0.00 41.86 3.85
242 243 0.668535 AACGCTTTGGCTTTGGAGTC 59.331 50.000 0.00 0.00 36.09 3.36
243 244 1.207593 CGCTTTGGCTTTGGAGTCG 59.792 57.895 0.00 0.00 36.09 4.18
244 245 1.581447 GCTTTGGCTTTGGAGTCGG 59.419 57.895 0.00 0.00 35.22 4.79
245 246 1.581447 CTTTGGCTTTGGAGTCGGC 59.419 57.895 0.00 0.00 0.00 5.54
246 247 2.187599 CTTTGGCTTTGGAGTCGGCG 62.188 60.000 0.00 0.00 0.00 6.46
247 248 2.668185 TTTGGCTTTGGAGTCGGCGA 62.668 55.000 4.99 4.99 0.00 5.54
248 249 2.125106 GGCTTTGGAGTCGGCGAT 60.125 61.111 14.79 1.58 0.00 4.58
249 250 2.464459 GGCTTTGGAGTCGGCGATG 61.464 63.158 14.79 0.00 0.00 3.84
250 251 2.464459 GCTTTGGAGTCGGCGATGG 61.464 63.158 14.79 0.00 0.00 3.51
251 252 1.079127 CTTTGGAGTCGGCGATGGT 60.079 57.895 14.79 0.00 0.00 3.55
252 253 1.079405 TTTGGAGTCGGCGATGGTC 60.079 57.895 14.79 10.57 0.00 4.02
253 254 2.829043 TTTGGAGTCGGCGATGGTCG 62.829 60.000 14.79 0.00 44.20 4.79
254 255 3.823330 GGAGTCGGCGATGGTCGT 61.823 66.667 14.79 0.00 43.10 4.34
255 256 2.579787 GAGTCGGCGATGGTCGTG 60.580 66.667 14.79 0.00 43.10 4.35
256 257 4.796231 AGTCGGCGATGGTCGTGC 62.796 66.667 14.79 0.00 43.10 5.34
257 258 4.796231 GTCGGCGATGGTCGTGCT 62.796 66.667 14.79 0.00 43.10 4.40
258 259 4.794439 TCGGCGATGGTCGTGCTG 62.794 66.667 4.99 0.00 43.10 4.41
259 260 4.794439 CGGCGATGGTCGTGCTGA 62.794 66.667 0.00 0.00 42.81 4.26
260 261 2.434185 GGCGATGGTCGTGCTGAA 60.434 61.111 1.11 0.00 42.81 3.02
261 262 2.740714 GGCGATGGTCGTGCTGAAC 61.741 63.158 1.11 0.00 42.81 3.18
279 280 8.795786 TGCTGAACACAGTTTTATTGAATAAC 57.204 30.769 0.00 0.00 34.51 1.89
280 281 8.629158 TGCTGAACACAGTTTTATTGAATAACT 58.371 29.630 0.00 0.00 34.51 2.24
290 291 8.893727 AGTTTTATTGAATAACTGGAGATTCCG 58.106 33.333 0.00 0.00 40.17 4.30
291 292 8.889717 GTTTTATTGAATAACTGGAGATTCCGA 58.110 33.333 0.00 0.00 40.17 4.55
292 293 9.456147 TTTTATTGAATAACTGGAGATTCCGAA 57.544 29.630 0.00 0.00 40.17 4.30
293 294 9.456147 TTTATTGAATAACTGGAGATTCCGAAA 57.544 29.630 0.00 0.00 40.17 3.46
294 295 7.938140 ATTGAATAACTGGAGATTCCGAAAA 57.062 32.000 0.00 0.00 40.17 2.29
295 296 6.737254 TGAATAACTGGAGATTCCGAAAAC 57.263 37.500 0.00 0.00 40.17 2.43
296 297 5.646360 TGAATAACTGGAGATTCCGAAAACC 59.354 40.000 0.00 0.00 40.17 3.27
297 298 2.491675 ACTGGAGATTCCGAAAACCC 57.508 50.000 0.00 0.00 40.17 4.11
298 299 1.004394 ACTGGAGATTCCGAAAACCCC 59.996 52.381 0.00 0.00 40.17 4.95
299 300 1.004277 CTGGAGATTCCGAAAACCCCA 59.996 52.381 0.00 0.00 40.17 4.96
300 301 1.638589 TGGAGATTCCGAAAACCCCAT 59.361 47.619 0.00 0.00 40.17 4.00
301 302 2.847449 TGGAGATTCCGAAAACCCCATA 59.153 45.455 0.00 0.00 40.17 2.74
302 303 3.267291 TGGAGATTCCGAAAACCCCATAA 59.733 43.478 0.00 0.00 40.17 1.90
303 304 3.630769 GGAGATTCCGAAAACCCCATAAC 59.369 47.826 0.00 0.00 0.00 1.89
304 305 3.628008 AGATTCCGAAAACCCCATAACC 58.372 45.455 0.00 0.00 0.00 2.85
305 306 2.973983 TTCCGAAAACCCCATAACCA 57.026 45.000 0.00 0.00 0.00 3.67
306 307 2.203470 TCCGAAAACCCCATAACCAC 57.797 50.000 0.00 0.00 0.00 4.16
307 308 1.424302 TCCGAAAACCCCATAACCACA 59.576 47.619 0.00 0.00 0.00 4.17
308 309 2.158505 TCCGAAAACCCCATAACCACAA 60.159 45.455 0.00 0.00 0.00 3.33
309 310 2.029739 CCGAAAACCCCATAACCACAAC 60.030 50.000 0.00 0.00 0.00 3.32
310 311 2.623889 CGAAAACCCCATAACCACAACA 59.376 45.455 0.00 0.00 0.00 3.33
311 312 3.257127 CGAAAACCCCATAACCACAACAT 59.743 43.478 0.00 0.00 0.00 2.71
312 313 4.459685 CGAAAACCCCATAACCACAACATA 59.540 41.667 0.00 0.00 0.00 2.29
313 314 5.620429 CGAAAACCCCATAACCACAACATAC 60.620 44.000 0.00 0.00 0.00 2.39
314 315 4.668138 AACCCCATAACCACAACATACT 57.332 40.909 0.00 0.00 0.00 2.12
315 316 4.668138 ACCCCATAACCACAACATACTT 57.332 40.909 0.00 0.00 0.00 2.24
316 317 4.340617 ACCCCATAACCACAACATACTTG 58.659 43.478 0.00 0.00 0.00 3.16
317 318 3.699038 CCCCATAACCACAACATACTTGG 59.301 47.826 0.00 0.00 36.39 3.61
318 319 3.699038 CCCATAACCACAACATACTTGGG 59.301 47.826 0.00 0.00 35.69 4.12
319 320 4.340617 CCATAACCACAACATACTTGGGT 58.659 43.478 0.00 0.00 34.41 4.51
320 321 5.502079 CCATAACCACAACATACTTGGGTA 58.498 41.667 0.00 0.00 37.00 3.69
354 355 3.056322 GCCACTTCTTCCAATGCATCTTT 60.056 43.478 0.00 0.00 0.00 2.52
361 362 8.084684 ACTTCTTCCAATGCATCTTTCTTTTAC 58.915 33.333 0.00 0.00 0.00 2.01
380 381 2.348472 ACTTTCATCTCCTCCCACCAA 58.652 47.619 0.00 0.00 0.00 3.67
399 400 2.942376 CAATACCGAGCCACAATGCTAA 59.058 45.455 0.00 0.00 42.95 3.09
457 462 5.923204 ACAGCTCATTGAATAGGTAGGAAG 58.077 41.667 0.00 0.00 0.00 3.46
466 471 4.098044 TGAATAGGTAGGAAGAGCTTCACG 59.902 45.833 11.90 0.00 41.20 4.35
510 515 4.628074 TCTAACCGCACTATTCATAAGCC 58.372 43.478 0.00 0.00 0.00 4.35
523 528 2.846206 TCATAAGCCTGTGATCCCAACT 59.154 45.455 0.00 0.00 0.00 3.16
526 531 0.543749 AGCCTGTGATCCCAACTAGC 59.456 55.000 0.00 0.00 0.00 3.42
527 532 0.253044 GCCTGTGATCCCAACTAGCA 59.747 55.000 0.00 0.00 0.00 3.49
592 1757 3.077088 TCCTCTGTAGACCTACCCAAAGT 59.923 47.826 4.88 0.00 35.26 2.66
617 1782 7.922699 AGTAGGTAGCCTCAAATATTTCTCT 57.077 36.000 0.00 0.00 34.61 3.10
620 1785 4.517075 GGTAGCCTCAAATATTTCTCTGCC 59.483 45.833 0.00 2.98 0.00 4.85
633 1798 0.514691 CTCTGCCAGTGCTTTCGTTC 59.485 55.000 0.00 0.00 38.71 3.95
634 1799 0.179059 TCTGCCAGTGCTTTCGTTCA 60.179 50.000 0.00 0.00 38.71 3.18
640 1805 4.022416 TGCCAGTGCTTTCGTTCAAATATT 60.022 37.500 0.00 0.00 38.71 1.28
657 1822 1.009997 ATTGGCCCCCTCATGAAAGA 58.990 50.000 0.00 0.00 0.00 2.52
672 1837 7.123247 CCTCATGAAAGACCACCTTATTTTCAT 59.877 37.037 0.00 5.25 44.72 2.57
675 1840 7.214467 TGAAAGACCACCTTATTTTCATGTC 57.786 36.000 0.00 0.00 34.04 3.06
708 1887 1.133730 AGAGATGTACTCCCTCCGTCC 60.134 57.143 0.00 0.00 45.96 4.79
720 1899 2.365582 CCTCCGTCCCAAAATAAGTGG 58.634 52.381 0.00 0.00 35.77 4.00
787 1967 3.055385 ACATACCTAGGTTCGTGTGCATT 60.055 43.478 22.11 0.00 0.00 3.56
920 2105 8.649810 ATTTACACGATGAAATACGTTTTGAC 57.350 30.769 0.00 0.00 40.76 3.18
934 2119 3.185797 CGTTTTGACGTCCCCTAGAAAAG 59.814 47.826 14.12 3.71 0.00 2.27
970 2155 7.962934 TGAAAGATACACAAAAACGACAAAG 57.037 32.000 0.00 0.00 0.00 2.77
977 2162 4.856487 ACACAAAAACGACAAAGTCATGTG 59.144 37.500 0.00 0.00 32.57 3.21
1013 2198 7.491372 CAGACGCTATTCACTATAAAAGTCCAA 59.509 37.037 0.00 0.00 35.76 3.53
1210 2419 2.689553 TTCGCACTCATGAATGGCTA 57.310 45.000 6.26 0.00 0.00 3.93
1216 2425 3.285484 CACTCATGAATGGCTAGGCTTT 58.715 45.455 18.18 17.08 0.00 3.51
1294 2508 1.269257 GCCCACTTTGCTCACAAGTTC 60.269 52.381 0.00 0.00 37.04 3.01
1310 4235 5.994668 CACAAGTTCTTAGGCTTCTTCTCTT 59.005 40.000 0.00 0.00 0.00 2.85
1378 4303 1.222936 CCTCCGAAGCTGCATCCTT 59.777 57.895 1.02 0.00 0.00 3.36
1632 4563 0.608035 GGGATGTTGGCCTCGAACAA 60.608 55.000 10.83 0.00 36.90 2.83
1721 4657 4.899239 GTGCGGCCATCGGGAGAG 62.899 72.222 2.24 0.00 45.48 3.20
1726 4662 1.762460 GGCCATCGGGAGAGGAAGA 60.762 63.158 0.00 0.00 44.82 2.87
1730 4668 1.133637 CCATCGGGAGAGGAAGAGAGA 60.134 57.143 0.00 0.00 44.82 3.10
1733 4671 0.467290 CGGGAGAGGAAGAGAGAGGG 60.467 65.000 0.00 0.00 0.00 4.30
1877 4858 2.126385 CGCCCGTGTGTAAGCGTA 60.126 61.111 0.00 0.00 43.45 4.42
1981 4980 1.519898 GCGGCCTTGGCATTGATTG 60.520 57.895 14.04 0.00 0.00 2.67
2137 5157 3.439540 GCGCTGATTTCGGCCCAA 61.440 61.111 0.00 0.00 45.16 4.12
2161 5181 1.449601 GCGAAAATCGGGCTCCTGA 60.450 57.895 0.00 0.00 40.84 3.86
2209 5234 3.737172 CGTGAAAAGCGCCTGGGG 61.737 66.667 2.29 6.36 0.00 4.96
2258 5416 2.231721 GCTCTAACAACCGTCTCCTCTT 59.768 50.000 0.00 0.00 0.00 2.85
2407 5584 0.476771 GAAGGTCTTGGTGTTCCCCA 59.523 55.000 0.00 0.00 0.00 4.96
2471 5648 1.448540 CGGCGAGGACAAGATTGCT 60.449 57.895 0.00 0.00 0.00 3.91
2570 5748 2.373169 TGTGCTGAGGAGGTCAAAGAAT 59.627 45.455 0.00 0.00 33.60 2.40
2576 5754 5.453903 GCTGAGGAGGTCAAAGAATATGCTA 60.454 44.000 0.00 0.00 33.60 3.49
2588 5766 3.257873 AGAATATGCTACAGCGCAGATCT 59.742 43.478 11.47 0.00 40.61 2.75
2750 6001 5.278512 GCACAGTCATAGCTACTATACAGCA 60.279 44.000 0.00 0.00 41.66 4.41
2754 6005 6.205658 CAGTCATAGCTACTATACAGCACTGA 59.794 42.308 4.31 7.45 39.69 3.41
2757 6008 8.085296 GTCATAGCTACTATACAGCACTGATTT 58.915 37.037 4.31 0.00 41.66 2.17
2759 6010 9.265901 CATAGCTACTATACAGCACTGATTTTT 57.734 33.333 4.31 0.00 41.66 1.94
2845 6117 0.607217 TCACATGGAAGCTGCACCAG 60.607 55.000 19.57 14.73 39.62 4.00
2971 6247 4.915667 GTGCGACAAAGTTTTTATTCTCCC 59.084 41.667 0.00 0.00 0.00 4.30
2988 6264 6.886178 TTCTCCCTAGTAAGCTGGTAATTT 57.114 37.500 0.00 0.00 0.00 1.82
2996 6272 9.832445 CCTAGTAAGCTGGTAATTTCTATTTCA 57.168 33.333 0.00 0.00 0.00 2.69
3026 6302 7.363431 ACTTTGCTTAACTAGATGCTGTTTTC 58.637 34.615 0.00 0.00 0.00 2.29
3125 6517 5.009631 TGGTTATGAACTTGTTCATCCTGG 58.990 41.667 26.09 0.00 41.50 4.45
3158 6550 9.931210 GTTATTTAACACACATATTGGAGCTAC 57.069 33.333 0.00 0.00 36.25 3.58
3279 6672 5.422012 ACTGGAATTTTGGTTCTGTGTTCTT 59.578 36.000 0.00 0.00 0.00 2.52
3294 6687 7.280356 TCTGTGTTCTTAAAGCTTCTTAAGGT 58.720 34.615 14.92 0.00 38.75 3.50
3336 6741 5.626142 TCCTTACTGCACCACAAAGATTTA 58.374 37.500 0.00 0.00 0.00 1.40
3362 6792 5.865085 TCAGTGTTGTTGCCTAACTAGATT 58.135 37.500 0.00 0.00 37.68 2.40
3396 6826 7.203218 TGGTATATTATGTATCTCGCATGCTC 58.797 38.462 17.13 0.00 0.00 4.26
3611 7050 6.119536 TGTTCCACTTCTTCTGAGCTAAAAA 58.880 36.000 0.00 0.00 0.00 1.94
3745 7199 5.776173 CTGATACGTTCAGTTCTAGGGAT 57.224 43.478 15.37 0.00 45.79 3.85
3905 7417 4.404640 ACCTCTGCTTAGCGTGGTATATA 58.595 43.478 16.46 0.00 31.51 0.86
3979 7491 3.352520 ATGCAAACCAGAGTTGGGCATT 61.353 45.455 10.69 0.37 46.99 3.56
3980 7492 4.071172 ATGCAAACCAGAGTTGGGCATTA 61.071 43.478 10.69 0.00 46.99 1.90
3981 7493 5.542176 ATGCAAACCAGAGTTGGGCATTAA 61.542 41.667 10.69 0.00 46.99 1.40
3982 7494 6.975407 ATGCAAACCAGAGTTGGGCATTAAA 61.975 40.000 10.69 0.00 46.99 1.52
3983 7495 8.904675 ATGCAAACCAGAGTTGGGCATTAAAC 62.905 42.308 10.69 0.00 46.99 2.01
4009 7524 4.749245 AACAGATGTAAGTTGGCTTTCG 57.251 40.909 0.00 0.00 36.22 3.46
4010 7525 2.484264 ACAGATGTAAGTTGGCTTTCGC 59.516 45.455 0.00 0.00 36.22 4.70
4011 7526 2.744202 CAGATGTAAGTTGGCTTTCGCT 59.256 45.455 0.00 0.00 36.22 4.93
4012 7527 3.932710 CAGATGTAAGTTGGCTTTCGCTA 59.067 43.478 0.00 0.00 36.22 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 4.949856 AGAAAACACTCTGCTCTGGAAAAA 59.050 37.500 0.00 0.00 0.00 1.94
10 11 4.526970 AGAAAACACTCTGCTCTGGAAAA 58.473 39.130 0.00 0.00 0.00 2.29
11 12 4.156455 AGAAAACACTCTGCTCTGGAAA 57.844 40.909 0.00 0.00 0.00 3.13
12 13 3.845781 AGAAAACACTCTGCTCTGGAA 57.154 42.857 0.00 0.00 0.00 3.53
13 14 3.845781 AAGAAAACACTCTGCTCTGGA 57.154 42.857 0.00 0.00 0.00 3.86
14 15 4.133078 AGAAAGAAAACACTCTGCTCTGG 58.867 43.478 0.00 0.00 0.00 3.86
15 16 5.526846 AGAAGAAAGAAAACACTCTGCTCTG 59.473 40.000 0.00 0.00 0.00 3.35
16 17 5.679601 AGAAGAAAGAAAACACTCTGCTCT 58.320 37.500 0.00 0.00 0.00 4.09
17 18 5.332959 CGAGAAGAAAGAAAACACTCTGCTC 60.333 44.000 0.00 0.00 37.28 4.26
18 19 4.509600 CGAGAAGAAAGAAAACACTCTGCT 59.490 41.667 0.00 0.00 0.00 4.24
19 20 4.508124 TCGAGAAGAAAGAAAACACTCTGC 59.492 41.667 0.00 0.00 0.00 4.26
20 21 6.777526 ATCGAGAAGAAAGAAAACACTCTG 57.222 37.500 0.00 0.00 0.00 3.35
21 22 8.888579 TTTATCGAGAAGAAAGAAAACACTCT 57.111 30.769 0.00 0.00 0.00 3.24
22 23 8.979574 TCTTTATCGAGAAGAAAGAAAACACTC 58.020 33.333 10.58 0.00 36.51 3.51
23 24 8.888579 TCTTTATCGAGAAGAAAGAAAACACT 57.111 30.769 10.58 0.00 36.51 3.55
32 33 8.290325 GCCTTTCTTTTCTTTATCGAGAAGAAA 58.710 33.333 24.34 24.34 44.72 2.52
33 34 7.444183 TGCCTTTCTTTTCTTTATCGAGAAGAA 59.556 33.333 17.84 17.84 40.33 2.52
34 35 6.934645 TGCCTTTCTTTTCTTTATCGAGAAGA 59.065 34.615 9.29 9.29 37.01 2.87
35 36 7.133891 TGCCTTTCTTTTCTTTATCGAGAAG 57.866 36.000 5.25 5.25 37.01 2.85
36 37 7.504924 TTGCCTTTCTTTTCTTTATCGAGAA 57.495 32.000 0.00 0.00 34.00 2.87
37 38 7.607991 AGATTGCCTTTCTTTTCTTTATCGAGA 59.392 33.333 0.00 0.00 0.00 4.04
38 39 7.756558 AGATTGCCTTTCTTTTCTTTATCGAG 58.243 34.615 0.00 0.00 0.00 4.04
39 40 7.390440 TGAGATTGCCTTTCTTTTCTTTATCGA 59.610 33.333 0.00 0.00 0.00 3.59
40 41 7.483059 GTGAGATTGCCTTTCTTTTCTTTATCG 59.517 37.037 0.00 0.00 0.00 2.92
41 42 7.757173 GGTGAGATTGCCTTTCTTTTCTTTATC 59.243 37.037 0.00 0.00 0.00 1.75
42 43 7.575720 CGGTGAGATTGCCTTTCTTTTCTTTAT 60.576 37.037 0.00 0.00 0.00 1.40
43 44 6.293955 CGGTGAGATTGCCTTTCTTTTCTTTA 60.294 38.462 0.00 0.00 0.00 1.85
44 45 5.507985 CGGTGAGATTGCCTTTCTTTTCTTT 60.508 40.000 0.00 0.00 0.00 2.52
45 46 4.022849 CGGTGAGATTGCCTTTCTTTTCTT 60.023 41.667 0.00 0.00 0.00 2.52
46 47 3.503748 CGGTGAGATTGCCTTTCTTTTCT 59.496 43.478 0.00 0.00 0.00 2.52
47 48 3.502211 TCGGTGAGATTGCCTTTCTTTTC 59.498 43.478 0.00 0.00 0.00 2.29
48 49 3.486383 TCGGTGAGATTGCCTTTCTTTT 58.514 40.909 0.00 0.00 0.00 2.27
49 50 3.077359 CTCGGTGAGATTGCCTTTCTTT 58.923 45.455 0.00 0.00 0.00 2.52
50 51 2.303022 TCTCGGTGAGATTGCCTTTCTT 59.697 45.455 0.00 0.00 33.35 2.52
51 52 1.902508 TCTCGGTGAGATTGCCTTTCT 59.097 47.619 0.00 0.00 33.35 2.52
52 53 2.093973 TCTCTCGGTGAGATTGCCTTTC 60.094 50.000 5.71 0.00 46.03 2.62
53 54 1.902508 TCTCTCGGTGAGATTGCCTTT 59.097 47.619 5.71 0.00 46.03 3.11
54 55 1.561643 TCTCTCGGTGAGATTGCCTT 58.438 50.000 5.71 0.00 46.03 4.35
55 56 3.289797 TCTCTCGGTGAGATTGCCT 57.710 52.632 5.71 0.00 46.03 4.75
62 63 1.662438 GGCTGGTCTCTCTCGGTGAG 61.662 65.000 0.68 0.68 43.96 3.51
63 64 1.679305 GGCTGGTCTCTCTCGGTGA 60.679 63.158 0.00 0.00 0.00 4.02
64 65 1.662438 GAGGCTGGTCTCTCTCGGTG 61.662 65.000 0.00 0.00 0.00 4.94
65 66 1.379309 GAGGCTGGTCTCTCTCGGT 60.379 63.158 0.00 0.00 0.00 4.69
66 67 2.124693 GGAGGCTGGTCTCTCTCGG 61.125 68.421 0.00 0.00 34.39 4.63
67 68 2.124693 GGGAGGCTGGTCTCTCTCG 61.125 68.421 0.00 0.00 31.75 4.04
68 69 1.000993 TGGGAGGCTGGTCTCTCTC 59.999 63.158 3.69 0.00 35.37 3.20
69 70 1.001503 CTGGGAGGCTGGTCTCTCT 59.998 63.158 3.69 0.00 35.37 3.10
70 71 1.305718 ACTGGGAGGCTGGTCTCTC 60.306 63.158 0.00 0.00 34.92 3.20
71 72 1.611851 CACTGGGAGGCTGGTCTCT 60.612 63.158 0.00 0.00 34.39 3.10
72 73 2.985456 CACTGGGAGGCTGGTCTC 59.015 66.667 0.00 0.00 0.00 3.36
73 74 3.325753 GCACTGGGAGGCTGGTCT 61.326 66.667 0.00 0.00 0.00 3.85
74 75 4.416738 GGCACTGGGAGGCTGGTC 62.417 72.222 0.00 0.00 0.00 4.02
77 78 4.767255 GACGGCACTGGGAGGCTG 62.767 72.222 0.00 0.00 42.11 4.85
80 81 3.316573 GAAGGACGGCACTGGGAGG 62.317 68.421 0.00 0.00 0.00 4.30
81 82 2.266055 GAAGGACGGCACTGGGAG 59.734 66.667 0.00 0.00 0.00 4.30
82 83 3.691342 CGAAGGACGGCACTGGGA 61.691 66.667 0.00 0.00 38.46 4.37
104 105 4.477975 GTCGTCGGTGGCGGAGAG 62.478 72.222 0.00 0.00 0.00 3.20
109 110 4.477975 GAGAGGTCGTCGGTGGCG 62.478 72.222 0.00 0.00 0.00 5.69
110 111 4.477975 CGAGAGGTCGTCGGTGGC 62.478 72.222 0.00 0.00 41.57 5.01
122 123 2.033755 ACGACAGACCGACCGAGAG 61.034 63.158 0.00 0.00 0.00 3.20
123 124 2.031616 ACGACAGACCGACCGAGA 59.968 61.111 0.00 0.00 0.00 4.04
124 125 2.176055 CACGACAGACCGACCGAG 59.824 66.667 0.00 0.00 0.00 4.63
125 126 2.281002 TCACGACAGACCGACCGA 60.281 61.111 0.00 0.00 0.00 4.69
126 127 1.848932 TTCTCACGACAGACCGACCG 61.849 60.000 0.00 0.00 0.00 4.79
127 128 0.109689 CTTCTCACGACAGACCGACC 60.110 60.000 0.00 0.00 0.00 4.79
128 129 0.109689 CCTTCTCACGACAGACCGAC 60.110 60.000 0.00 0.00 0.00 4.79
129 130 1.241990 CCCTTCTCACGACAGACCGA 61.242 60.000 0.00 0.00 0.00 4.69
130 131 1.213013 CCCTTCTCACGACAGACCG 59.787 63.158 0.00 0.00 0.00 4.79
131 132 1.079750 GCCCTTCTCACGACAGACC 60.080 63.158 0.00 0.00 0.00 3.85
132 133 1.079750 GGCCCTTCTCACGACAGAC 60.080 63.158 0.00 0.00 0.00 3.51
133 134 2.636412 CGGCCCTTCTCACGACAGA 61.636 63.158 0.00 0.00 0.00 3.41
134 135 2.125912 CGGCCCTTCTCACGACAG 60.126 66.667 0.00 0.00 0.00 3.51
135 136 4.373116 GCGGCCCTTCTCACGACA 62.373 66.667 0.00 0.00 0.00 4.35
139 140 1.686325 TATCTGGCGGCCCTTCTCAC 61.686 60.000 17.97 0.00 0.00 3.51
140 141 1.382557 TATCTGGCGGCCCTTCTCA 60.383 57.895 17.97 0.00 0.00 3.27
141 142 1.069935 GTATCTGGCGGCCCTTCTC 59.930 63.158 17.97 0.58 0.00 2.87
142 143 2.444256 GGTATCTGGCGGCCCTTCT 61.444 63.158 17.97 0.98 0.00 2.85
143 144 2.111251 GGTATCTGGCGGCCCTTC 59.889 66.667 17.97 2.53 0.00 3.46
144 145 3.861797 CGGTATCTGGCGGCCCTT 61.862 66.667 17.97 3.51 0.00 3.95
151 152 4.017877 GCATGCGCGGTATCTGGC 62.018 66.667 8.83 0.00 0.00 4.85
161 162 3.420222 CTACGTGAACCGCATGCGC 62.420 63.158 34.00 20.90 41.42 6.09
162 163 1.145759 ATCTACGTGAACCGCATGCG 61.146 55.000 32.60 32.60 41.42 4.73
163 164 1.006832 AATCTACGTGAACCGCATGC 58.993 50.000 7.91 7.91 41.42 4.06
164 165 3.863424 ACTAAATCTACGTGAACCGCATG 59.137 43.478 0.00 0.00 41.42 4.06
165 166 4.119442 ACTAAATCTACGTGAACCGCAT 57.881 40.909 0.00 0.00 41.42 4.73
166 167 3.581024 ACTAAATCTACGTGAACCGCA 57.419 42.857 0.00 0.00 41.42 5.69
167 168 4.916099 AAACTAAATCTACGTGAACCGC 57.084 40.909 0.00 0.00 41.42 5.68
168 169 7.412237 CCCTAAAAACTAAATCTACGTGAACCG 60.412 40.741 0.00 0.00 44.03 4.44
169 170 7.624974 GCCCTAAAAACTAAATCTACGTGAACC 60.625 40.741 0.00 0.00 0.00 3.62
170 171 7.239271 GCCCTAAAAACTAAATCTACGTGAAC 58.761 38.462 0.00 0.00 0.00 3.18
171 172 6.372381 GGCCCTAAAAACTAAATCTACGTGAA 59.628 38.462 0.00 0.00 0.00 3.18
172 173 5.876460 GGCCCTAAAAACTAAATCTACGTGA 59.124 40.000 0.00 0.00 0.00 4.35
173 174 5.065602 GGGCCCTAAAAACTAAATCTACGTG 59.934 44.000 17.04 0.00 0.00 4.49
174 175 5.045359 AGGGCCCTAAAAACTAAATCTACGT 60.045 40.000 27.42 0.00 0.00 3.57
175 176 5.434408 AGGGCCCTAAAAACTAAATCTACG 58.566 41.667 27.42 0.00 0.00 3.51
176 177 7.571919 ACTAGGGCCCTAAAAACTAAATCTAC 58.428 38.462 31.41 0.00 0.00 2.59
177 178 7.760400 ACTAGGGCCCTAAAAACTAAATCTA 57.240 36.000 31.41 6.97 0.00 1.98
178 179 6.653790 ACTAGGGCCCTAAAAACTAAATCT 57.346 37.500 31.41 4.16 0.00 2.40
179 180 8.438373 AGATACTAGGGCCCTAAAAACTAAATC 58.562 37.037 31.41 21.27 0.00 2.17
180 181 8.346247 AGATACTAGGGCCCTAAAAACTAAAT 57.654 34.615 31.41 15.23 0.00 1.40
181 182 7.760400 AGATACTAGGGCCCTAAAAACTAAA 57.240 36.000 31.41 9.04 0.00 1.85
182 183 7.760400 AAGATACTAGGGCCCTAAAAACTAA 57.240 36.000 31.41 9.83 0.00 2.24
183 184 8.291745 TCTAAGATACTAGGGCCCTAAAAACTA 58.708 37.037 31.41 16.83 0.00 2.24
184 185 7.137567 TCTAAGATACTAGGGCCCTAAAAACT 58.862 38.462 31.41 23.14 0.00 2.66
185 186 7.370905 TCTAAGATACTAGGGCCCTAAAAAC 57.629 40.000 31.41 21.50 0.00 2.43
186 187 8.577164 AATCTAAGATACTAGGGCCCTAAAAA 57.423 34.615 31.41 19.60 0.00 1.94
187 188 8.577164 AAATCTAAGATACTAGGGCCCTAAAA 57.423 34.615 31.41 22.07 0.00 1.52
188 189 8.437575 CAAAATCTAAGATACTAGGGCCCTAAA 58.562 37.037 31.41 22.43 0.00 1.85
189 190 7.017254 CCAAAATCTAAGATACTAGGGCCCTAA 59.983 40.741 31.41 19.07 0.00 2.69
190 191 6.500751 CCAAAATCTAAGATACTAGGGCCCTA 59.499 42.308 30.08 30.08 0.00 3.53
191 192 5.310857 CCAAAATCTAAGATACTAGGGCCCT 59.689 44.000 31.35 31.35 0.00 5.19
192 193 5.515008 CCCAAAATCTAAGATACTAGGGCCC 60.515 48.000 16.46 16.46 0.00 5.80
193 194 5.073280 ACCCAAAATCTAAGATACTAGGGCC 59.927 44.000 0.00 0.00 36.01 5.80
194 195 6.189036 ACCCAAAATCTAAGATACTAGGGC 57.811 41.667 0.00 0.00 36.01 5.19
195 196 7.574607 ACAACCCAAAATCTAAGATACTAGGG 58.425 38.462 0.00 0.00 38.52 3.53
196 197 9.110502 GAACAACCCAAAATCTAAGATACTAGG 57.889 37.037 0.00 0.00 0.00 3.02
197 198 9.667107 TGAACAACCCAAAATCTAAGATACTAG 57.333 33.333 0.00 0.00 0.00 2.57
199 200 8.793592 GTTGAACAACCCAAAATCTAAGATACT 58.206 33.333 6.43 0.00 35.36 2.12
200 201 7.749126 CGTTGAACAACCCAAAATCTAAGATAC 59.251 37.037 11.30 0.00 38.03 2.24
201 202 7.574217 GCGTTGAACAACCCAAAATCTAAGATA 60.574 37.037 11.30 0.00 38.03 1.98
202 203 6.677913 CGTTGAACAACCCAAAATCTAAGAT 58.322 36.000 11.30 0.00 38.03 2.40
203 204 5.506649 GCGTTGAACAACCCAAAATCTAAGA 60.507 40.000 11.30 0.00 38.03 2.10
204 205 4.679654 GCGTTGAACAACCCAAAATCTAAG 59.320 41.667 11.30 0.00 38.03 2.18
205 206 4.339814 AGCGTTGAACAACCCAAAATCTAA 59.660 37.500 11.30 0.00 38.03 2.10
206 207 3.886505 AGCGTTGAACAACCCAAAATCTA 59.113 39.130 11.30 0.00 38.03 1.98
207 208 2.693074 AGCGTTGAACAACCCAAAATCT 59.307 40.909 11.30 0.00 38.03 2.40
208 209 3.092334 AGCGTTGAACAACCCAAAATC 57.908 42.857 11.30 0.00 38.03 2.17
209 210 3.535280 AAGCGTTGAACAACCCAAAAT 57.465 38.095 11.30 0.00 38.03 1.82
210 211 2.996621 CAAAGCGTTGAACAACCCAAAA 59.003 40.909 6.52 0.00 38.03 2.44
211 212 2.611518 CAAAGCGTTGAACAACCCAAA 58.388 42.857 6.52 0.00 38.03 3.28
212 213 1.134965 CCAAAGCGTTGAACAACCCAA 60.135 47.619 14.32 0.00 38.03 4.12
213 214 0.457851 CCAAAGCGTTGAACAACCCA 59.542 50.000 14.32 0.00 38.03 4.51
214 215 0.874175 GCCAAAGCGTTGAACAACCC 60.874 55.000 14.32 3.55 38.03 4.11
215 216 0.102300 AGCCAAAGCGTTGAACAACC 59.898 50.000 14.32 5.41 46.67 3.77
216 217 1.921243 AAGCCAAAGCGTTGAACAAC 58.079 45.000 14.32 7.51 46.67 3.32
217 218 2.663826 AAAGCCAAAGCGTTGAACAA 57.336 40.000 14.32 0.00 46.67 2.83
223 224 0.668535 GACTCCAAAGCCAAAGCGTT 59.331 50.000 0.00 0.00 46.67 4.84
224 225 1.507141 CGACTCCAAAGCCAAAGCGT 61.507 55.000 0.00 0.00 46.67 5.07
225 226 1.207593 CGACTCCAAAGCCAAAGCG 59.792 57.895 0.00 0.00 46.67 4.68
226 227 1.581447 CCGACTCCAAAGCCAAAGC 59.419 57.895 0.00 0.00 40.32 3.51
227 228 1.581447 GCCGACTCCAAAGCCAAAG 59.419 57.895 0.00 0.00 0.00 2.77
228 229 2.258013 CGCCGACTCCAAAGCCAAA 61.258 57.895 0.00 0.00 0.00 3.28
229 230 2.463589 ATCGCCGACTCCAAAGCCAA 62.464 55.000 0.00 0.00 0.00 4.52
230 231 2.954684 ATCGCCGACTCCAAAGCCA 61.955 57.895 0.00 0.00 0.00 4.75
231 232 2.125106 ATCGCCGACTCCAAAGCC 60.125 61.111 0.00 0.00 0.00 4.35
232 233 2.464459 CCATCGCCGACTCCAAAGC 61.464 63.158 0.00 0.00 0.00 3.51
233 234 1.079127 ACCATCGCCGACTCCAAAG 60.079 57.895 0.00 0.00 0.00 2.77
234 235 1.079405 GACCATCGCCGACTCCAAA 60.079 57.895 0.00 0.00 0.00 3.28
235 236 2.577059 GACCATCGCCGACTCCAA 59.423 61.111 0.00 0.00 0.00 3.53
236 237 3.822192 CGACCATCGCCGACTCCA 61.822 66.667 0.00 0.00 31.14 3.86
237 238 3.823330 ACGACCATCGCCGACTCC 61.823 66.667 0.00 0.00 45.12 3.85
238 239 2.579787 CACGACCATCGCCGACTC 60.580 66.667 0.00 0.00 45.12 3.36
239 240 4.796231 GCACGACCATCGCCGACT 62.796 66.667 0.00 0.00 45.12 4.18
240 241 4.796231 AGCACGACCATCGCCGAC 62.796 66.667 0.00 0.00 45.12 4.79
241 242 4.794439 CAGCACGACCATCGCCGA 62.794 66.667 0.00 0.00 45.12 5.54
242 243 4.794439 TCAGCACGACCATCGCCG 62.794 66.667 0.00 0.00 45.12 6.46
243 244 2.434185 TTCAGCACGACCATCGCC 60.434 61.111 0.00 0.00 45.12 5.54
244 245 2.027073 TGTTCAGCACGACCATCGC 61.027 57.895 0.00 0.00 45.12 4.58
245 246 1.781555 GTGTTCAGCACGACCATCG 59.218 57.895 0.00 0.00 46.93 3.84
254 255 8.629158 AGTTATTCAATAAAACTGTGTTCAGCA 58.371 29.630 0.00 0.00 44.77 4.41
255 256 8.905702 CAGTTATTCAATAAAACTGTGTTCAGC 58.094 33.333 5.24 0.00 43.20 4.26
256 257 9.398170 CCAGTTATTCAATAAAACTGTGTTCAG 57.602 33.333 10.76 0.00 45.51 3.02
257 258 9.126151 TCCAGTTATTCAATAAAACTGTGTTCA 57.874 29.630 10.76 0.00 45.51 3.18
258 259 9.612620 CTCCAGTTATTCAATAAAACTGTGTTC 57.387 33.333 10.76 0.00 45.51 3.18
259 260 9.349713 TCTCCAGTTATTCAATAAAACTGTGTT 57.650 29.630 10.76 0.00 45.51 3.32
260 261 8.918202 TCTCCAGTTATTCAATAAAACTGTGT 57.082 30.769 10.76 0.00 45.51 3.72
264 265 8.893727 CGGAATCTCCAGTTATTCAATAAAACT 58.106 33.333 0.00 0.00 35.91 2.66
265 266 8.889717 TCGGAATCTCCAGTTATTCAATAAAAC 58.110 33.333 0.00 0.00 35.91 2.43
266 267 9.456147 TTCGGAATCTCCAGTTATTCAATAAAA 57.544 29.630 0.00 0.00 35.91 1.52
267 268 9.456147 TTTCGGAATCTCCAGTTATTCAATAAA 57.544 29.630 0.00 0.00 35.91 1.40
268 269 9.456147 TTTTCGGAATCTCCAGTTATTCAATAA 57.544 29.630 0.00 0.00 35.91 1.40
269 270 8.889717 GTTTTCGGAATCTCCAGTTATTCAATA 58.110 33.333 0.00 0.00 35.91 1.90
270 271 7.148069 GGTTTTCGGAATCTCCAGTTATTCAAT 60.148 37.037 0.00 0.00 35.91 2.57
271 272 6.150474 GGTTTTCGGAATCTCCAGTTATTCAA 59.850 38.462 0.00 0.00 35.91 2.69
272 273 5.646360 GGTTTTCGGAATCTCCAGTTATTCA 59.354 40.000 0.00 0.00 35.91 2.57
273 274 5.066117 GGGTTTTCGGAATCTCCAGTTATTC 59.934 44.000 0.00 0.00 35.91 1.75
274 275 4.948004 GGGTTTTCGGAATCTCCAGTTATT 59.052 41.667 0.00 0.00 35.91 1.40
275 276 4.524053 GGGTTTTCGGAATCTCCAGTTAT 58.476 43.478 0.00 0.00 35.91 1.89
276 277 3.307904 GGGGTTTTCGGAATCTCCAGTTA 60.308 47.826 0.00 0.00 35.91 2.24
277 278 2.554564 GGGGTTTTCGGAATCTCCAGTT 60.555 50.000 0.00 0.00 35.91 3.16
278 279 1.004394 GGGGTTTTCGGAATCTCCAGT 59.996 52.381 0.00 0.00 35.91 4.00
279 280 1.004277 TGGGGTTTTCGGAATCTCCAG 59.996 52.381 1.61 0.00 35.91 3.86
280 281 1.068948 TGGGGTTTTCGGAATCTCCA 58.931 50.000 1.61 1.61 35.91 3.86
281 282 2.437085 ATGGGGTTTTCGGAATCTCC 57.563 50.000 0.00 0.00 0.00 3.71
282 283 3.630769 GGTTATGGGGTTTTCGGAATCTC 59.369 47.826 0.00 0.00 0.00 2.75
283 284 3.010808 TGGTTATGGGGTTTTCGGAATCT 59.989 43.478 0.00 0.00 0.00 2.40
284 285 3.129813 GTGGTTATGGGGTTTTCGGAATC 59.870 47.826 0.00 0.00 0.00 2.52
285 286 3.093814 GTGGTTATGGGGTTTTCGGAAT 58.906 45.455 0.00 0.00 0.00 3.01
286 287 2.158505 TGTGGTTATGGGGTTTTCGGAA 60.159 45.455 0.00 0.00 0.00 4.30
287 288 1.424302 TGTGGTTATGGGGTTTTCGGA 59.576 47.619 0.00 0.00 0.00 4.55
288 289 1.912417 TGTGGTTATGGGGTTTTCGG 58.088 50.000 0.00 0.00 0.00 4.30
289 290 2.623889 TGTTGTGGTTATGGGGTTTTCG 59.376 45.455 0.00 0.00 0.00 3.46
290 291 4.882842 ATGTTGTGGTTATGGGGTTTTC 57.117 40.909 0.00 0.00 0.00 2.29
291 292 5.399113 AGTATGTTGTGGTTATGGGGTTTT 58.601 37.500 0.00 0.00 0.00 2.43
292 293 5.005628 AGTATGTTGTGGTTATGGGGTTT 57.994 39.130 0.00 0.00 0.00 3.27
293 294 4.668138 AGTATGTTGTGGTTATGGGGTT 57.332 40.909 0.00 0.00 0.00 4.11
294 295 4.340617 CAAGTATGTTGTGGTTATGGGGT 58.659 43.478 0.00 0.00 0.00 4.95
295 296 3.699038 CCAAGTATGTTGTGGTTATGGGG 59.301 47.826 0.00 0.00 0.00 4.96
296 297 3.699038 CCCAAGTATGTTGTGGTTATGGG 59.301 47.826 0.00 0.00 39.06 4.00
297 298 4.340617 ACCCAAGTATGTTGTGGTTATGG 58.659 43.478 0.00 0.00 0.00 2.74
298 299 6.127842 GGTTACCCAAGTATGTTGTGGTTATG 60.128 42.308 0.00 0.00 0.00 1.90
299 300 5.947566 GGTTACCCAAGTATGTTGTGGTTAT 59.052 40.000 0.00 0.00 0.00 1.89
300 301 5.073417 AGGTTACCCAAGTATGTTGTGGTTA 59.927 40.000 0.00 0.00 0.00 2.85
301 302 4.141111 AGGTTACCCAAGTATGTTGTGGTT 60.141 41.667 0.00 0.00 0.00 3.67
302 303 3.396611 AGGTTACCCAAGTATGTTGTGGT 59.603 43.478 0.00 0.00 0.00 4.16
303 304 4.028993 AGGTTACCCAAGTATGTTGTGG 57.971 45.455 0.00 0.00 0.00 4.17
307 308 9.734984 GCAATATATAGGTTACCCAAGTATGTT 57.265 33.333 0.00 0.00 0.00 2.71
308 309 8.326529 GGCAATATATAGGTTACCCAAGTATGT 58.673 37.037 0.00 0.00 0.00 2.29
309 310 8.325787 TGGCAATATATAGGTTACCCAAGTATG 58.674 37.037 0.00 0.00 0.00 2.39
310 311 8.326529 GTGGCAATATATAGGTTACCCAAGTAT 58.673 37.037 0.00 0.00 0.00 2.12
311 312 7.514820 AGTGGCAATATATAGGTTACCCAAGTA 59.485 37.037 0.00 0.00 0.00 2.24
312 313 6.331837 AGTGGCAATATATAGGTTACCCAAGT 59.668 38.462 0.00 0.00 0.00 3.16
313 314 6.779860 AGTGGCAATATATAGGTTACCCAAG 58.220 40.000 0.00 0.00 0.00 3.61
314 315 6.773583 AGTGGCAATATATAGGTTACCCAA 57.226 37.500 0.00 0.00 0.00 4.12
315 316 6.561070 AGAAGTGGCAATATATAGGTTACCCA 59.439 38.462 0.00 0.00 0.00 4.51
316 317 7.017319 AGAAGTGGCAATATATAGGTTACCC 57.983 40.000 0.00 0.00 0.00 3.69
317 318 7.606839 GGAAGAAGTGGCAATATATAGGTTACC 59.393 40.741 0.00 0.00 0.00 2.85
318 319 8.154856 TGGAAGAAGTGGCAATATATAGGTTAC 58.845 37.037 0.00 0.00 0.00 2.50
319 320 8.270137 TGGAAGAAGTGGCAATATATAGGTTA 57.730 34.615 0.00 0.00 0.00 2.85
320 321 7.149202 TGGAAGAAGTGGCAATATATAGGTT 57.851 36.000 0.00 0.00 0.00 3.50
328 329 3.429492 TGCATTGGAAGAAGTGGCAATA 58.571 40.909 0.00 0.00 0.00 1.90
329 330 2.250031 TGCATTGGAAGAAGTGGCAAT 58.750 42.857 0.00 0.00 0.00 3.56
354 355 5.280521 GGTGGGAGGAGATGAAAGTAAAAGA 60.281 44.000 0.00 0.00 0.00 2.52
361 362 3.659183 ATTGGTGGGAGGAGATGAAAG 57.341 47.619 0.00 0.00 0.00 2.62
380 381 2.093181 TGTTAGCATTGTGGCTCGGTAT 60.093 45.455 0.00 0.00 44.54 2.73
399 400 9.986833 GTTAAAGAAAACATGCAAAAAGATTGT 57.013 25.926 0.00 0.00 0.00 2.71
457 462 2.688507 TCAAGTCAATCCGTGAAGCTC 58.311 47.619 0.00 0.00 38.23 4.09
466 471 5.942826 AGAGAGGTTTTGATCAAGTCAATCC 59.057 40.000 8.41 2.86 45.77 3.01
492 497 2.170607 ACAGGCTTATGAATAGTGCGGT 59.829 45.455 0.00 0.00 0.00 5.68
510 515 3.057969 TGTTGCTAGTTGGGATCACAG 57.942 47.619 0.00 0.00 0.00 3.66
558 1723 5.133941 GTCTACAGAGGACCAGTATGATCA 58.866 45.833 0.00 0.00 39.69 2.92
592 1757 8.861086 CAGAGAAATATTTGAGGCTACCTACTA 58.139 37.037 5.17 0.00 31.76 1.82
617 1782 1.098869 TTTGAACGAAAGCACTGGCA 58.901 45.000 0.00 0.00 44.61 4.92
620 1785 4.324402 GCCAATATTTGAACGAAAGCACTG 59.676 41.667 0.00 0.00 0.00 3.66
633 1798 2.961510 TCATGAGGGGGCCAATATTTG 58.038 47.619 4.39 0.00 0.00 2.32
634 1799 3.704545 TTCATGAGGGGGCCAATATTT 57.295 42.857 4.39 0.00 0.00 1.40
640 1805 1.691219 GTCTTTCATGAGGGGGCCA 59.309 57.895 4.39 0.00 0.00 5.36
672 1837 9.013229 AGTACATCTCTGCAAATTTTATTGACA 57.987 29.630 0.00 0.00 31.84 3.58
675 1840 7.917505 GGGAGTACATCTCTGCAAATTTTATTG 59.082 37.037 0.00 0.00 42.40 1.90
708 1887 5.600696 ACAAAGTTGAGCCACTTATTTTGG 58.399 37.500 0.00 0.00 35.87 3.28
720 1899 5.948992 ATGAAGTTAGGACAAAGTTGAGC 57.051 39.130 0.00 0.00 0.00 4.26
886 2071 4.320667 TCATCGTGTAAATTTGCACTCG 57.679 40.909 28.92 20.37 40.91 4.18
920 2105 4.382345 AACGTATCTTTTCTAGGGGACG 57.618 45.455 0.00 0.00 35.30 4.79
934 2119 9.820229 TTTGTGTATCTTTCATCAAAACGTATC 57.180 29.630 0.00 0.00 0.00 2.24
970 2155 4.211389 CGTCTGTGCTAAAAACACATGAC 58.789 43.478 0.00 12.42 46.32 3.06
1156 2347 2.747446 AGCTACATGTAGGCCGTTTTTG 59.253 45.455 29.45 6.11 33.87 2.44
1210 2419 1.202976 ACCAACATCTGAGCAAAGCCT 60.203 47.619 0.00 0.00 0.00 4.58
1216 2425 4.734398 AAACAAAACCAACATCTGAGCA 57.266 36.364 0.00 0.00 0.00 4.26
1294 2508 3.438434 GGCAACAAGAGAAGAAGCCTAAG 59.562 47.826 0.00 0.00 37.67 2.18
1378 4303 1.692762 GGAGAGGATAGAAGGTGGGCA 60.693 57.143 0.00 0.00 0.00 5.36
1632 4563 1.867919 CGAACAGGAGTCGTGGCTCT 61.868 60.000 16.69 0.00 35.89 4.09
1750 4688 2.123640 CCCTCTCCCTCTCCCGTC 60.124 72.222 0.00 0.00 0.00 4.79
1788 4765 1.227664 CCGAGCTCTCCCTCTACCA 59.772 63.158 12.85 0.00 0.00 3.25
1791 4768 2.203224 CGCCGAGCTCTCCCTCTA 60.203 66.667 12.85 0.00 0.00 2.43
1915 4897 1.910580 ATTGATTCCTCACGGGCCGT 61.911 55.000 28.83 28.83 42.36 5.68
1917 4899 1.103398 CCATTGATTCCTCACGGGCC 61.103 60.000 0.00 0.00 34.39 5.80
2054 5061 2.203437 GGGGCGAGTGGTTTTGGT 60.203 61.111 0.00 0.00 0.00 3.67
2137 5157 2.774799 GCCCGATTTTCGCAGGCAT 61.775 57.895 10.88 0.00 43.53 4.40
2142 5162 1.745115 CAGGAGCCCGATTTTCGCA 60.745 57.895 0.00 0.00 38.82 5.10
2236 5294 1.819903 GAGGAGACGGTTGTTAGAGCT 59.180 52.381 0.00 0.00 0.00 4.09
2378 5555 3.222354 AAGACCTTCGGCGAACGCT 62.222 57.895 19.83 12.78 43.86 5.07
2402 5579 0.915872 ACATCACAGAGCCATGGGGA 60.916 55.000 15.13 0.00 35.59 4.81
2407 5584 1.911357 TCCTGAACATCACAGAGCCAT 59.089 47.619 0.00 0.00 37.54 4.40
2471 5648 4.776349 TCTTCAAGTACTTCACTTTGGCA 58.224 39.130 4.77 0.00 45.54 4.92
2570 5748 1.956477 TCAGATCTGCGCTGTAGCATA 59.044 47.619 18.36 0.00 46.97 3.14
2576 5754 0.108424 GGAACTCAGATCTGCGCTGT 60.108 55.000 18.36 10.60 34.98 4.40
2588 5766 3.576118 CCAACTCAGAGAGAAGGAACTCA 59.424 47.826 3.79 0.00 39.14 3.41
2732 5910 7.767250 AATCAGTGCTGTATAGTAGCTATGA 57.233 36.000 0.00 13.74 41.66 2.15
2767 6018 6.907212 GTCAAAATCAGTGCTGTATATTTCCG 59.093 38.462 0.00 0.00 0.00 4.30
2768 6019 7.912250 CAGTCAAAATCAGTGCTGTATATTTCC 59.088 37.037 0.00 0.00 0.00 3.13
2771 6022 8.043113 TCTCAGTCAAAATCAGTGCTGTATATT 58.957 33.333 0.00 0.00 0.00 1.28
2773 6024 6.935167 TCTCAGTCAAAATCAGTGCTGTATA 58.065 36.000 0.00 0.00 0.00 1.47
2774 6025 5.798132 TCTCAGTCAAAATCAGTGCTGTAT 58.202 37.500 0.00 0.00 0.00 2.29
2777 6028 4.083431 CCTTCTCAGTCAAAATCAGTGCTG 60.083 45.833 0.00 0.00 0.00 4.41
2845 6117 1.067495 AGCGTAGTCTTCAGCAAGGTC 60.067 52.381 0.00 0.00 0.00 3.85
2884 6157 2.672874 CAAATCTGAATCTTGTCGGCGA 59.327 45.455 4.99 4.99 0.00 5.54
2996 6272 6.591834 CAGCATCTAGTTAAGCAAAGTACACT 59.408 38.462 0.00 0.00 0.00 3.55
3026 6302 7.569639 AATCATCAGTTCAATCAGATTCTGG 57.430 36.000 13.59 0.00 32.83 3.86
3125 6517 8.806634 CAATATGTGTGTTAAATAACATGGCAC 58.193 33.333 9.06 12.04 46.56 5.01
3158 6550 0.240945 GGCATGTTCCCACACTTTCG 59.759 55.000 0.00 0.00 35.03 3.46
3308 6709 5.362430 TCTTTGTGGTGCAGTAAGGATTTTT 59.638 36.000 0.00 0.00 0.00 1.94
3309 6710 4.892934 TCTTTGTGGTGCAGTAAGGATTTT 59.107 37.500 0.00 0.00 0.00 1.82
3336 6741 6.296026 TCTAGTTAGGCAACAACACTGAAAT 58.704 36.000 0.00 0.00 37.10 2.17
3396 6826 0.921347 GCGTTAGCAGTGACCATACG 59.079 55.000 0.00 0.00 44.35 3.06
3611 7050 5.743117 AGATGCAGCAGAAAGAACTAAGAT 58.257 37.500 4.07 0.00 0.00 2.40
3692 7146 8.463930 AGGTCACTCAGAAATATAGAAGAGAG 57.536 38.462 0.00 0.00 0.00 3.20
3698 7152 7.510685 AGCCAATAGGTCACTCAGAAATATAGA 59.489 37.037 0.00 0.00 37.19 1.98
3978 7490 8.301002 GCCAACTTACATCTGTTAATGGTTTAA 58.699 33.333 0.00 0.00 0.00 1.52
3979 7491 7.668052 AGCCAACTTACATCTGTTAATGGTTTA 59.332 33.333 0.00 0.00 0.00 2.01
3980 7492 6.493458 AGCCAACTTACATCTGTTAATGGTTT 59.507 34.615 0.00 0.00 0.00 3.27
3981 7493 6.010219 AGCCAACTTACATCTGTTAATGGTT 58.990 36.000 0.00 0.00 0.00 3.67
3982 7494 5.570320 AGCCAACTTACATCTGTTAATGGT 58.430 37.500 0.00 0.00 0.00 3.55
3983 7495 6.515272 AAGCCAACTTACATCTGTTAATGG 57.485 37.500 0.00 0.00 33.13 3.16
4009 7524 6.652481 TGAAAAATAGATGCCATCTAGCTAGC 59.348 38.462 18.62 6.62 44.44 3.42
4010 7525 7.148440 GCTGAAAAATAGATGCCATCTAGCTAG 60.148 40.741 18.62 15.01 44.44 3.42
4011 7526 6.652481 GCTGAAAAATAGATGCCATCTAGCTA 59.348 38.462 18.62 0.00 44.44 3.32
4012 7527 5.472820 GCTGAAAAATAGATGCCATCTAGCT 59.527 40.000 18.62 6.88 44.44 3.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.