Multiple sequence alignment - TraesCS6B01G061000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G061000 chr6B 100.000 5225 0 0 1 5225 40448889 40454113 0.000000e+00 9649.0
1 TraesCS6B01G061000 chr6B 84.722 648 57 19 250 890 689828122 689827510 1.240000e-170 610.0
2 TraesCS6B01G061000 chr6A 93.816 3978 177 30 408 4336 23367001 23363044 0.000000e+00 5919.0
3 TraesCS6B01G061000 chr6A 85.839 918 98 13 4334 5223 23363007 23362094 0.000000e+00 946.0
4 TraesCS6B01G061000 chr6A 88.372 344 26 8 35 373 23367335 23367001 8.150000e-108 401.0
5 TraesCS6B01G061000 chr6A 82.791 215 31 6 4808 5019 109060783 109060572 2.480000e-43 187.0
6 TraesCS6B01G061000 chr6A 82.791 215 31 6 4808 5019 109087828 109087617 2.480000e-43 187.0
7 TraesCS6B01G061000 chr6D 91.319 4366 232 66 30 4336 24833223 24828946 0.000000e+00 5827.0
8 TraesCS6B01G061000 chr6D 81.743 241 24 12 4569 4794 24827987 24827752 3.210000e-42 183.0
9 TraesCS6B01G061000 chr2A 88.452 788 75 4 3549 4336 331189181 331189952 0.000000e+00 937.0
10 TraesCS6B01G061000 chr2A 96.875 32 1 0 4688 4719 83468134 83468103 3.000000e-03 54.7
11 TraesCS6B01G061000 chr3A 87.579 789 82 3 3548 4336 198238235 198239007 0.000000e+00 900.0
12 TraesCS6B01G061000 chr7A 87.579 789 79 5 3548 4336 271498720 271497951 0.000000e+00 896.0
13 TraesCS6B01G061000 chr7A 77.402 562 95 29 3456 4004 628663965 628664507 6.570000e-79 305.0
14 TraesCS6B01G061000 chr7A 85.714 70 4 5 1294 1360 103399803 103399737 9.390000e-08 69.4
15 TraesCS6B01G061000 chrUn 86.095 863 73 16 4 862 96632887 96632068 0.000000e+00 885.0
16 TraesCS6B01G061000 chr4B 85.297 891 78 21 4 890 350107800 350106959 0.000000e+00 870.0
17 TraesCS6B01G061000 chr4B 87.692 715 71 6 3548 4261 476635019 476634321 0.000000e+00 817.0
18 TraesCS6B01G061000 chr3B 85.189 871 90 17 25 890 88472743 88471907 0.000000e+00 857.0
19 TraesCS6B01G061000 chr3B 85.174 661 47 19 250 890 13892251 13891622 9.550000e-177 630.0
20 TraesCS6B01G061000 chr3B 79.583 240 38 8 4791 5020 779507857 779508095 1.510000e-35 161.0
21 TraesCS6B01G061000 chr2D 86.223 646 48 18 250 890 582683100 582682491 0.000000e+00 662.0
22 TraesCS6B01G061000 chr2D 77.848 158 28 5 3716 3871 472467614 472467462 2.000000e-14 91.6
23 TraesCS6B01G061000 chr3D 88.649 555 34 12 341 890 31598115 31597585 0.000000e+00 649.0
24 TraesCS6B01G061000 chr3D 100.000 30 0 0 4688 4717 230698357 230698386 7.310000e-04 56.5
25 TraesCS6B01G061000 chr5B 85.443 632 63 16 271 890 661392869 661392255 9.550000e-177 630.0
26 TraesCS6B01G061000 chr5B 88.912 487 43 3 1029 1514 51976851 51977327 1.620000e-164 590.0
27 TraesCS6B01G061000 chr5B 86.792 530 37 13 271 795 34428426 34427925 1.270000e-155 560.0
28 TraesCS6B01G061000 chr5B 86.634 404 32 11 492 890 34314574 34314188 1.340000e-115 427.0
29 TraesCS6B01G061000 chr5B 86.241 407 33 10 492 890 570293588 570293197 2.250000e-113 420.0
30 TraesCS6B01G061000 chr4A 84.068 590 56 15 1021 1605 727710196 727710752 7.700000e-148 534.0
31 TraesCS6B01G061000 chr4A 92.308 39 2 1 4688 4726 25294412 25294375 3.000000e-03 54.7
32 TraesCS6B01G061000 chr7D 86.871 457 43 6 435 890 8119844 8119404 3.630000e-136 496.0
33 TraesCS6B01G061000 chr7D 77.046 562 97 29 3456 4004 545696566 545697108 1.420000e-75 294.0
34 TraesCS6B01G061000 chr7D 100.000 39 0 0 1322 1360 101138561 101138523 7.260000e-09 73.1
35 TraesCS6B01G061000 chr7D 92.308 39 2 1 4688 4726 240533497 240533460 3.000000e-03 54.7
36 TraesCS6B01G061000 chr7B 86.768 461 27 6 1148 1605 724348068 724347639 2.830000e-132 483.0
37 TraesCS6B01G061000 chr7B 78.253 561 92 27 3456 4004 589961218 589961760 3.020000e-87 333.0
38 TraesCS6B01G061000 chr7B 84.286 70 5 5 1294 1360 57680009 57679943 4.370000e-06 63.9
39 TraesCS6B01G061000 chr4D 89.716 282 15 5 492 773 330207791 330207524 1.080000e-91 348.0
40 TraesCS6B01G061000 chr4D 94.444 36 1 1 4688 4723 492789387 492789421 3.000000e-03 54.7
41 TraesCS6B01G061000 chr1A 94.118 119 7 0 1481 1599 14524231 14524113 1.160000e-41 182.0
42 TraesCS6B01G061000 chr1A 90.789 76 7 0 1330 1405 14524292 14524217 9.260000e-18 102.0
43 TraesCS6B01G061000 chr1A 100.000 29 0 0 4688 4716 276115165 276115193 3.000000e-03 54.7
44 TraesCS6B01G061000 chr1A 100.000 29 0 0 4689 4717 588226739 588226767 3.000000e-03 54.7
45 TraesCS6B01G061000 chr1D 81.567 217 37 3 4808 5022 248884962 248884747 5.380000e-40 176.0
46 TraesCS6B01G061000 chr2B 77.848 158 28 5 3716 3871 551633923 551633771 2.000000e-14 91.6
47 TraesCS6B01G061000 chr5D 92.500 40 3 0 4688 4727 270113966 270113927 2.030000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G061000 chr6B 40448889 40454113 5224 False 9649 9649 100.000000 1 5225 1 chr6B.!!$F1 5224
1 TraesCS6B01G061000 chr6B 689827510 689828122 612 True 610 610 84.722000 250 890 1 chr6B.!!$R1 640
2 TraesCS6B01G061000 chr6A 23362094 23367335 5241 True 2422 5919 89.342333 35 5223 3 chr6A.!!$R3 5188
3 TraesCS6B01G061000 chr6D 24827752 24833223 5471 True 3005 5827 86.531000 30 4794 2 chr6D.!!$R1 4764
4 TraesCS6B01G061000 chr2A 331189181 331189952 771 False 937 937 88.452000 3549 4336 1 chr2A.!!$F1 787
5 TraesCS6B01G061000 chr3A 198238235 198239007 772 False 900 900 87.579000 3548 4336 1 chr3A.!!$F1 788
6 TraesCS6B01G061000 chr7A 271497951 271498720 769 True 896 896 87.579000 3548 4336 1 chr7A.!!$R2 788
7 TraesCS6B01G061000 chr7A 628663965 628664507 542 False 305 305 77.402000 3456 4004 1 chr7A.!!$F1 548
8 TraesCS6B01G061000 chrUn 96632068 96632887 819 True 885 885 86.095000 4 862 1 chrUn.!!$R1 858
9 TraesCS6B01G061000 chr4B 350106959 350107800 841 True 870 870 85.297000 4 890 1 chr4B.!!$R1 886
10 TraesCS6B01G061000 chr4B 476634321 476635019 698 True 817 817 87.692000 3548 4261 1 chr4B.!!$R2 713
11 TraesCS6B01G061000 chr3B 88471907 88472743 836 True 857 857 85.189000 25 890 1 chr3B.!!$R2 865
12 TraesCS6B01G061000 chr3B 13891622 13892251 629 True 630 630 85.174000 250 890 1 chr3B.!!$R1 640
13 TraesCS6B01G061000 chr2D 582682491 582683100 609 True 662 662 86.223000 250 890 1 chr2D.!!$R2 640
14 TraesCS6B01G061000 chr3D 31597585 31598115 530 True 649 649 88.649000 341 890 1 chr3D.!!$R1 549
15 TraesCS6B01G061000 chr5B 661392255 661392869 614 True 630 630 85.443000 271 890 1 chr5B.!!$R4 619
16 TraesCS6B01G061000 chr5B 34427925 34428426 501 True 560 560 86.792000 271 795 1 chr5B.!!$R2 524
17 TraesCS6B01G061000 chr4A 727710196 727710752 556 False 534 534 84.068000 1021 1605 1 chr4A.!!$F1 584
18 TraesCS6B01G061000 chr7D 545696566 545697108 542 False 294 294 77.046000 3456 4004 1 chr7D.!!$F1 548
19 TraesCS6B01G061000 chr7B 589961218 589961760 542 False 333 333 78.253000 3456 4004 1 chr7B.!!$F1 548

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
131 153 0.037447 ACAGAAAGAGGAAGCTGCCC 59.963 55.000 7.30 1.53 31.74 5.36 F
621 705 0.039764 ACCTGACCTGATCGACCTGA 59.960 55.000 0.00 0.00 0.00 3.86 F
2053 2232 0.107800 CCTCGTCTACCTCGACCTGA 60.108 60.000 0.00 0.00 33.71 3.86 F
2760 2939 1.066858 AGATTGCACATCGTCGACCTT 60.067 47.619 10.58 0.00 0.00 3.50 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1457 1636 1.135170 TGTACGACACGTTGAACACCA 60.135 47.619 1.53 0.00 41.54 4.17 R
2405 2584 1.078848 ATGTCGAGCACCTTGAGCC 60.079 57.895 0.00 0.00 0.00 4.70 R
3277 3459 0.608308 TCCTCCTCTTCTTCGTCGCA 60.608 55.000 0.00 0.00 0.00 5.10 R
4428 4684 0.105778 GGGTGTGGCTAGATCTCAGC 59.894 60.000 0.00 7.06 38.35 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.200373 ATCTTGTTTACTTGGGCGCT 57.800 45.000 7.64 0.00 0.00 5.92
21 22 1.519408 TCTTGTTTACTTGGGCGCTC 58.481 50.000 7.64 2.47 0.00 5.03
22 23 0.521735 CTTGTTTACTTGGGCGCTCC 59.478 55.000 3.94 6.36 0.00 4.70
61 62 6.516194 CGGTTGGAGTAGAGTAGAAAACTTGA 60.516 42.308 0.00 0.00 39.07 3.02
106 107 2.549754 CTGACTTTTGTGCAGGTAGGTG 59.450 50.000 0.00 0.00 0.00 4.00
131 153 0.037447 ACAGAAAGAGGAAGCTGCCC 59.963 55.000 7.30 1.53 31.74 5.36
147 169 4.835056 AGCTGCCCATCTTAATTAATTCCC 59.165 41.667 3.39 0.00 0.00 3.97
193 215 1.743252 GCCGGCTGTTCTCTGAAGG 60.743 63.158 22.15 0.00 0.00 3.46
206 228 8.383318 TGTTCTCTGAAGGAAAACAAAGATAG 57.617 34.615 0.00 0.00 0.00 2.08
262 290 3.124560 GCTAAGGCGTAGACCTGAATTC 58.875 50.000 11.79 0.00 39.93 2.17
277 305 1.126846 GAATTCTCGTTGCCGACACAG 59.873 52.381 0.00 0.00 38.40 3.66
290 318 2.159653 CCGACACAGCATTTTCTACTGC 60.160 50.000 0.00 0.00 38.69 4.40
291 319 2.159653 CGACACAGCATTTTCTACTGCC 60.160 50.000 0.00 0.00 39.22 4.85
292 320 3.077359 GACACAGCATTTTCTACTGCCT 58.923 45.455 0.00 0.00 39.22 4.75
293 321 3.077359 ACACAGCATTTTCTACTGCCTC 58.923 45.455 0.00 0.00 39.22 4.70
294 322 3.244700 ACACAGCATTTTCTACTGCCTCT 60.245 43.478 0.00 0.00 39.22 3.69
312 341 7.121315 ACTGCCTCTCCACTTGTAAATATTTTC 59.879 37.037 5.91 1.70 0.00 2.29
318 364 7.184936 TCTCCACTTGTAAATATTTTCCCCCTA 59.815 37.037 5.91 0.00 0.00 3.53
320 366 6.893005 CCACTTGTAAATATTTTCCCCCTACA 59.107 38.462 5.91 0.00 0.00 2.74
321 367 7.563556 CCACTTGTAAATATTTTCCCCCTACAT 59.436 37.037 5.91 0.00 0.00 2.29
322 368 9.635404 CACTTGTAAATATTTTCCCCCTACATA 57.365 33.333 5.91 0.00 0.00 2.29
323 369 9.862149 ACTTGTAAATATTTTCCCCCTACATAG 57.138 33.333 5.91 6.03 0.00 2.23
327 373 8.957466 GTAAATATTTTCCCCCTACATAGATGC 58.043 37.037 5.91 0.00 0.00 3.91
328 374 6.718593 ATATTTTCCCCCTACATAGATGCA 57.281 37.500 0.00 0.00 0.00 3.96
329 375 5.605540 ATTTTCCCCCTACATAGATGCAT 57.394 39.130 0.00 0.00 0.00 3.96
330 376 4.371624 TTTCCCCCTACATAGATGCATG 57.628 45.455 2.46 0.00 0.00 4.06
339 394 6.463472 CCCTACATAGATGCATGAAGACAGAA 60.463 42.308 2.46 0.00 0.00 3.02
348 411 9.186837 AGATGCATGAAGACAGAAAGATAAATT 57.813 29.630 2.46 0.00 0.00 1.82
462 538 3.431572 GCTCATTCTGACTTGTGACAGTC 59.568 47.826 7.82 7.82 43.23 3.51
538 614 2.514824 GACGATTGGAGCTGGGGC 60.515 66.667 0.00 0.00 39.06 5.80
613 697 0.266152 CCTCCCCTACCTGACCTGAT 59.734 60.000 0.00 0.00 0.00 2.90
614 698 1.710816 CTCCCCTACCTGACCTGATC 58.289 60.000 0.00 0.00 0.00 2.92
615 699 0.106167 TCCCCTACCTGACCTGATCG 60.106 60.000 0.00 0.00 0.00 3.69
616 700 0.106167 CCCCTACCTGACCTGATCGA 60.106 60.000 0.00 0.00 0.00 3.59
617 701 1.033574 CCCTACCTGACCTGATCGAC 58.966 60.000 0.00 0.00 0.00 4.20
618 702 1.033574 CCTACCTGACCTGATCGACC 58.966 60.000 0.00 0.00 0.00 4.79
619 703 1.410365 CCTACCTGACCTGATCGACCT 60.410 57.143 0.00 0.00 0.00 3.85
620 704 1.678627 CTACCTGACCTGATCGACCTG 59.321 57.143 0.00 0.00 0.00 4.00
621 705 0.039764 ACCTGACCTGATCGACCTGA 59.960 55.000 0.00 0.00 0.00 3.86
637 721 4.196971 GACCTGACCGCCATTAAAGTAAT 58.803 43.478 0.00 0.00 0.00 1.89
704 788 4.446994 TGACACAACAGAAAACAATGCA 57.553 36.364 0.00 0.00 0.00 3.96
715 807 1.668419 AACAATGCACCCGATCTAGC 58.332 50.000 0.00 0.00 0.00 3.42
816 908 7.725397 CCTACATCCAGGAATTCCATTTAATCA 59.275 37.037 26.22 4.40 38.00 2.57
817 909 7.592885 ACATCCAGGAATTCCATTTAATCAG 57.407 36.000 26.22 9.01 38.89 2.90
818 910 7.356680 ACATCCAGGAATTCCATTTAATCAGA 58.643 34.615 26.22 9.03 38.89 3.27
819 911 7.504911 ACATCCAGGAATTCCATTTAATCAGAG 59.495 37.037 26.22 6.46 38.89 3.35
820 912 6.973642 TCCAGGAATTCCATTTAATCAGAGT 58.026 36.000 26.22 0.00 38.89 3.24
821 913 7.056635 TCCAGGAATTCCATTTAATCAGAGTC 58.943 38.462 26.22 0.00 38.89 3.36
822 914 6.017605 CCAGGAATTCCATTTAATCAGAGTCG 60.018 42.308 26.22 0.00 38.89 4.18
823 915 5.529060 AGGAATTCCATTTAATCAGAGTCGC 59.471 40.000 26.22 0.00 38.89 5.19
824 916 5.278022 GGAATTCCATTTAATCAGAGTCGCC 60.278 44.000 20.04 0.00 35.64 5.54
825 917 2.821546 TCCATTTAATCAGAGTCGCCG 58.178 47.619 0.00 0.00 0.00 6.46
826 918 1.867233 CCATTTAATCAGAGTCGCCGG 59.133 52.381 0.00 0.00 0.00 6.13
909 1046 1.445238 GCCGCTGAGTCTGACAGAC 60.445 63.158 25.27 25.27 45.38 3.51
955 1092 2.496899 TCAGCAACCTCCATTCTTCC 57.503 50.000 0.00 0.00 0.00 3.46
996 1157 4.766404 TCGAATGAGCGATCAATAGCTA 57.234 40.909 7.76 0.00 44.69 3.32
998 1159 3.302964 CGAATGAGCGATCAATAGCTAGC 59.697 47.826 7.76 6.62 44.69 3.42
1066 1236 1.734477 GTGATCGTGCTGCTGTCGT 60.734 57.895 0.00 0.00 0.00 4.34
1073 1243 4.996434 GCTGCTGTCGTGGTGCCT 62.996 66.667 0.00 0.00 0.00 4.75
1143 1313 2.492090 CTCAGAGGGTTCTCGGCG 59.508 66.667 0.00 0.00 44.47 6.46
1560 1739 4.388499 GGCAACGGCTTCGAGGGA 62.388 66.667 0.00 0.00 40.87 4.20
1638 1817 1.599047 CATGAACAGGCTCTCCGGT 59.401 57.895 0.00 0.00 42.73 5.28
1677 1856 2.040544 CCAATGCCGGTCGCTTCTT 61.041 57.895 1.90 0.00 38.78 2.52
1680 1859 1.021390 AATGCCGGTCGCTTCTTGAG 61.021 55.000 1.90 0.00 38.78 3.02
1792 1971 4.501285 TCTCCGGCGAGATCCCGT 62.501 66.667 9.30 0.00 44.13 5.28
1793 1972 3.528370 CTCCGGCGAGATCCCGTT 61.528 66.667 9.30 0.00 44.13 4.44
1851 2030 2.093764 CCTCTCCTTCAACGCATTCTCT 60.094 50.000 0.00 0.00 0.00 3.10
1854 2033 1.347707 TCCTTCAACGCATTCTCTGGT 59.652 47.619 0.00 0.00 0.00 4.00
1881 2060 3.470567 GAGGTGTTCGACGCGCTG 61.471 66.667 5.73 0.00 0.00 5.18
2053 2232 0.107800 CCTCGTCTACCTCGACCTGA 60.108 60.000 0.00 0.00 33.71 3.86
2164 2343 1.726265 GAGATACCGCCGTCGTTCT 59.274 57.895 0.00 0.00 0.00 3.01
2167 2346 1.996786 GATACCGCCGTCGTTCTCCA 61.997 60.000 0.00 0.00 0.00 3.86
2337 2516 2.165301 CGACGGGTTCGCCAAGATC 61.165 63.158 0.00 0.00 41.87 2.75
2760 2939 1.066858 AGATTGCACATCGTCGACCTT 60.067 47.619 10.58 0.00 0.00 3.50
2899 3078 1.203237 TCAGCTTCCTCTCCCACTTCT 60.203 52.381 0.00 0.00 0.00 2.85
2967 3146 1.807573 CTTCACCTTCTCGAGCGCC 60.808 63.158 7.81 0.00 0.00 6.53
3077 3259 2.046700 GACCAATGACGGCCGGAA 60.047 61.111 31.76 17.96 0.00 4.30
3090 3272 4.194720 CGGAAGAGCGCCGCTAGT 62.195 66.667 13.54 1.63 42.55 2.57
3234 3416 1.153823 CGACGAGGAAAGCACCGAT 60.154 57.895 0.00 0.00 34.73 4.18
3277 3459 1.614824 CTGGTGCTCCTCTTCCCCT 60.615 63.158 6.34 0.00 34.23 4.79
3309 3494 0.323542 AGGAGGAGACGACGGTGATT 60.324 55.000 0.00 0.00 0.00 2.57
4247 4447 6.818644 TGAAGCTTGTGTAGATAACTGAATCC 59.181 38.462 2.10 0.00 0.00 3.01
4336 4542 9.674824 GTGTAAAGATTGAATGGATGATGATTC 57.325 33.333 0.00 0.00 0.00 2.52
4357 4602 9.904198 TGATTCCTGACATTTTACATGAAGATA 57.096 29.630 0.00 0.00 0.00 1.98
4423 4679 9.730705 AGTTGATCAAGATTCAGTTAAATCTCA 57.269 29.630 8.80 0.00 43.53 3.27
4428 4684 8.201554 TCAAGATTCAGTTAAATCTCAATCGG 57.798 34.615 0.00 0.00 43.53 4.18
4464 4721 6.624423 CCACACCCTTAATTCAGAATTTCAG 58.376 40.000 13.71 9.98 32.38 3.02
4472 4729 5.916661 AATTCAGAATTTCAGCTCTGCAT 57.083 34.783 2.20 0.00 39.17 3.96
4474 4731 3.946606 TCAGAATTTCAGCTCTGCATCA 58.053 40.909 0.00 0.00 39.17 3.07
4488 4745 5.164620 TCTGCATCACATCCAAGAAGTTA 57.835 39.130 0.00 0.00 0.00 2.24
4493 4750 7.092079 TGCATCACATCCAAGAAGTTAATTTG 58.908 34.615 0.00 0.00 0.00 2.32
4515 4772 9.846248 ATTTGAATAAGAACAAGCAATACACTC 57.154 29.630 0.00 0.00 0.00 3.51
4549 4806 4.142138 ACAAATCAACCCGCAACACTTTTA 60.142 37.500 0.00 0.00 0.00 1.52
4560 4817 4.026475 CGCAACACTTTTATTCGCCAAAAA 60.026 37.500 0.00 0.00 0.00 1.94
4611 5547 1.068895 TGAACACAAGCAAATGCAGGG 59.931 47.619 8.28 3.46 45.16 4.45
4612 5548 1.069049 GAACACAAGCAAATGCAGGGT 59.931 47.619 8.28 4.12 45.16 4.34
4613 5549 1.993956 ACACAAGCAAATGCAGGGTA 58.006 45.000 8.28 0.00 45.16 3.69
4614 5550 1.613437 ACACAAGCAAATGCAGGGTAC 59.387 47.619 8.28 0.00 45.16 3.34
4616 5552 2.297033 CACAAGCAAATGCAGGGTACTT 59.703 45.455 8.28 0.00 45.16 2.24
4617 5553 2.558359 ACAAGCAAATGCAGGGTACTTC 59.442 45.455 8.28 0.00 45.16 3.01
4618 5554 1.453155 AGCAAATGCAGGGTACTTCG 58.547 50.000 8.28 0.00 45.16 3.79
4619 5555 1.003118 AGCAAATGCAGGGTACTTCGA 59.997 47.619 8.28 0.00 45.16 3.71
4627 5563 2.505557 GGTACTTCGACCCGCACG 60.506 66.667 0.00 0.00 32.88 5.34
4642 5578 1.474320 CGCACGGATTCCAAAGGGATA 60.474 52.381 3.09 0.00 44.48 2.59
4643 5579 2.222027 GCACGGATTCCAAAGGGATAG 58.778 52.381 3.09 0.00 44.48 2.08
4659 5595 6.272822 AGGGATAGTTTGAAGTTTTGATGC 57.727 37.500 0.00 0.00 0.00 3.91
4667 5603 5.549742 TTGAAGTTTTGATGCCCTTGAAT 57.450 34.783 0.00 0.00 0.00 2.57
4697 5649 0.250234 CAGACTGATCTTTCGCCCCA 59.750 55.000 0.00 0.00 30.42 4.96
4727 5679 5.382618 AATAAAGCAACAGCTGAAGAAGG 57.617 39.130 23.35 3.79 38.93 3.46
4729 5681 2.645838 AGCAACAGCTGAAGAAGGAA 57.354 45.000 23.35 0.00 37.19 3.36
4730 5682 3.151912 AGCAACAGCTGAAGAAGGAAT 57.848 42.857 23.35 0.00 37.19 3.01
4747 5699 2.107041 AATCACGGCACCTGGAACGA 62.107 55.000 0.00 0.00 0.00 3.85
4748 5700 1.899437 ATCACGGCACCTGGAACGAT 61.899 55.000 0.00 0.00 0.00 3.73
4771 5723 5.227569 TGATCTTGCCATAATGGACGTAT 57.772 39.130 0.00 0.00 40.96 3.06
4802 5754 2.892425 CCGGCGTCTCATGGAAGC 60.892 66.667 6.01 11.63 46.13 3.86
4819 5771 1.226018 GCCCTTTGCGATCGAAACG 60.226 57.895 21.57 12.78 0.00 3.60
4820 5772 1.632046 GCCCTTTGCGATCGAAACGA 61.632 55.000 21.57 0.00 41.13 3.85
4836 5788 5.575606 TCGAAACGAAGGATAAGCTAAACTG 59.424 40.000 0.00 0.00 31.06 3.16
4860 5812 7.935405 TGGTTTATGGGAAAAGGACTAATAGT 58.065 34.615 0.00 0.00 0.00 2.12
4862 5814 7.226128 GGTTTATGGGAAAAGGACTAATAGTCG 59.774 40.741 13.60 0.00 45.96 4.18
4888 5840 3.742385 TCCAAATACTCGTTTTTCCGGT 58.258 40.909 0.00 0.00 0.00 5.28
4960 5912 3.756434 ACATGGTTTTGGACGGTTAGATG 59.244 43.478 0.00 0.00 0.00 2.90
4969 5921 3.195661 GGACGGTTAGATGCCTAAACAG 58.804 50.000 0.00 0.00 41.53 3.16
4976 5928 5.470437 GGTTAGATGCCTAAACAGGATTAGC 59.530 44.000 0.00 0.00 41.20 3.09
4981 5933 3.118038 TGCCTAAACAGGATTAGCGGAAT 60.118 43.478 0.00 0.00 32.62 3.01
4985 5938 3.366052 AACAGGATTAGCGGAATTGGT 57.634 42.857 0.00 0.00 0.00 3.67
4996 5949 4.337145 AGCGGAATTGGTTTGGTATAACA 58.663 39.130 0.00 0.00 0.00 2.41
5002 5955 7.201626 CGGAATTGGTTTGGTATAACAATCGTA 60.202 37.037 3.54 0.00 0.00 3.43
5036 5989 2.561478 TAGTGTTGAAAGGTGCCTCC 57.439 50.000 0.00 0.00 0.00 4.30
5037 5990 0.535102 AGTGTTGAAAGGTGCCTCCG 60.535 55.000 0.00 0.00 41.99 4.63
5045 5998 2.579410 AAGGTGCCTCCGTGTAATTT 57.421 45.000 0.00 0.00 41.99 1.82
5058 6011 5.049267 TCCGTGTAATTTCAAAGTTGCCTAC 60.049 40.000 0.00 0.00 0.00 3.18
5059 6012 5.151389 CGTGTAATTTCAAAGTTGCCTACC 58.849 41.667 0.00 0.00 0.00 3.18
5079 6032 5.793030 ACCTATGATACTCAGTTGCCTAC 57.207 43.478 0.00 0.00 0.00 3.18
5080 6033 5.208890 ACCTATGATACTCAGTTGCCTACA 58.791 41.667 0.00 0.00 0.00 2.74
5081 6034 5.841237 ACCTATGATACTCAGTTGCCTACAT 59.159 40.000 0.00 0.00 0.00 2.29
5086 6039 7.544804 TGATACTCAGTTGCCTACATATGAT 57.455 36.000 10.38 0.00 0.00 2.45
5100 6053 5.314923 ACATATGATGAAAGTTGTGTGCC 57.685 39.130 10.38 0.00 0.00 5.01
5110 6063 5.534278 TGAAAGTTGTGTGCCATCATTTCTA 59.466 36.000 0.00 0.00 0.00 2.10
5111 6064 6.040278 TGAAAGTTGTGTGCCATCATTTCTAA 59.960 34.615 0.00 0.00 0.00 2.10
5113 6066 4.082571 AGTTGTGTGCCATCATTTCTAAGC 60.083 41.667 0.00 0.00 0.00 3.09
5135 6088 8.894768 AAGCTTTCTACAATATACTTGCTAGG 57.105 34.615 0.00 0.00 0.00 3.02
5161 6118 8.935844 GTGAATTCACTAGTACACATGATTCAA 58.064 33.333 27.66 0.00 43.25 2.69
5162 6119 9.500785 TGAATTCACTAGTACACATGATTCAAA 57.499 29.630 3.38 0.00 0.00 2.69
5196 6153 5.041951 TGTTTAGCAATAAAGTTGCCTCG 57.958 39.130 8.96 0.00 45.98 4.63
5201 6158 4.770795 AGCAATAAAGTTGCCTCGTCTAT 58.229 39.130 8.96 0.00 45.98 1.98
5205 6162 6.564873 GCAATAAAGTTGCCTCGTCTATCATC 60.565 42.308 1.46 0.00 39.38 2.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.488153 GAGCGCCCAAGTAAACAAGATT 59.512 45.455 2.29 0.00 0.00 2.40
1 2 2.084546 GAGCGCCCAAGTAAACAAGAT 58.915 47.619 2.29 0.00 0.00 2.40
2 3 1.519408 GAGCGCCCAAGTAAACAAGA 58.481 50.000 2.29 0.00 0.00 3.02
17 18 3.259064 CCGTGTTATTATATGGGGAGCG 58.741 50.000 0.00 0.00 0.00 5.03
19 20 5.001232 CCAACCGTGTTATTATATGGGGAG 58.999 45.833 0.00 0.00 0.00 4.30
20 21 4.659368 TCCAACCGTGTTATTATATGGGGA 59.341 41.667 0.00 0.00 0.00 4.81
21 22 4.975631 TCCAACCGTGTTATTATATGGGG 58.024 43.478 0.00 0.00 0.00 4.96
22 23 5.617252 ACTCCAACCGTGTTATTATATGGG 58.383 41.667 0.00 0.00 0.00 4.00
23 24 7.663827 TCTACTCCAACCGTGTTATTATATGG 58.336 38.462 0.00 0.00 0.00 2.74
28 29 7.112122 TCTACTCTACTCCAACCGTGTTATTA 58.888 38.462 0.00 0.00 0.00 0.98
32 33 3.759581 TCTACTCTACTCCAACCGTGTT 58.240 45.455 0.00 0.00 0.00 3.32
61 62 4.385825 TCAGCCGTAATGTTTCTTCAACT 58.614 39.130 0.00 0.00 36.21 3.16
106 107 1.135460 GCTTCCTCTTTCTGTGCATGC 60.135 52.381 11.82 11.82 0.00 4.06
147 169 3.369147 CAGTGACTTGCTCGGATTACTTG 59.631 47.826 0.00 0.00 0.00 3.16
243 271 3.066342 CGAGAATTCAGGTCTACGCCTTA 59.934 47.826 8.44 0.00 36.58 2.69
277 305 2.680339 GTGGAGAGGCAGTAGAAAATGC 59.320 50.000 0.00 0.00 41.80 3.56
290 318 6.321435 GGGGAAAATATTTACAAGTGGAGAGG 59.679 42.308 0.01 0.00 0.00 3.69
291 319 6.321435 GGGGGAAAATATTTACAAGTGGAGAG 59.679 42.308 0.01 0.00 0.00 3.20
292 320 6.011096 AGGGGGAAAATATTTACAAGTGGAGA 60.011 38.462 0.01 0.00 0.00 3.71
293 321 6.194967 AGGGGGAAAATATTTACAAGTGGAG 58.805 40.000 0.01 0.00 0.00 3.86
294 322 6.160483 AGGGGGAAAATATTTACAAGTGGA 57.840 37.500 0.01 0.00 0.00 4.02
312 341 3.584406 TCTTCATGCATCTATGTAGGGGG 59.416 47.826 0.00 0.00 0.00 5.40
318 364 6.647229 TCTTTCTGTCTTCATGCATCTATGT 58.353 36.000 0.00 0.00 0.00 2.29
320 366 9.842775 TTTATCTTTCTGTCTTCATGCATCTAT 57.157 29.630 0.00 0.00 0.00 1.98
321 367 9.842775 ATTTATCTTTCTGTCTTCATGCATCTA 57.157 29.630 0.00 0.00 0.00 1.98
322 368 8.749026 ATTTATCTTTCTGTCTTCATGCATCT 57.251 30.769 0.00 0.00 0.00 2.90
323 369 9.234384 CAATTTATCTTTCTGTCTTCATGCATC 57.766 33.333 0.00 0.00 0.00 3.91
324 370 8.963725 TCAATTTATCTTTCTGTCTTCATGCAT 58.036 29.630 0.00 0.00 0.00 3.96
325 371 8.339344 TCAATTTATCTTTCTGTCTTCATGCA 57.661 30.769 0.00 0.00 0.00 3.96
329 375 9.113838 GCCTATCAATTTATCTTTCTGTCTTCA 57.886 33.333 0.00 0.00 0.00 3.02
330 376 8.563732 GGCCTATCAATTTATCTTTCTGTCTTC 58.436 37.037 0.00 0.00 0.00 2.87
339 394 4.757149 GTCGCAGGCCTATCAATTTATCTT 59.243 41.667 3.98 0.00 0.00 2.40
348 411 1.522092 CCAAGTCGCAGGCCTATCA 59.478 57.895 3.98 0.00 0.00 2.15
552 630 2.434185 TCAACGGCTCGTGGATGC 60.434 61.111 0.94 0.00 39.99 3.91
613 697 0.609151 TTTAATGGCGGTCAGGTCGA 59.391 50.000 0.00 0.00 0.00 4.20
614 698 1.006832 CTTTAATGGCGGTCAGGTCG 58.993 55.000 0.00 0.00 0.00 4.79
615 699 2.109425 ACTTTAATGGCGGTCAGGTC 57.891 50.000 0.00 0.00 0.00 3.85
616 700 3.706600 TTACTTTAATGGCGGTCAGGT 57.293 42.857 0.00 0.00 0.00 4.00
617 701 4.196193 TGATTACTTTAATGGCGGTCAGG 58.804 43.478 0.00 0.00 0.00 3.86
618 702 5.811399 TTGATTACTTTAATGGCGGTCAG 57.189 39.130 0.00 0.00 0.00 3.51
619 703 5.883115 TGATTGATTACTTTAATGGCGGTCA 59.117 36.000 0.00 0.00 0.00 4.02
620 704 6.371809 TGATTGATTACTTTAATGGCGGTC 57.628 37.500 0.00 0.00 0.00 4.79
621 705 6.680378 GCTTGATTGATTACTTTAATGGCGGT 60.680 38.462 0.00 0.00 0.00 5.68
637 721 2.842496 AGTGGATGAGGAGCTTGATTGA 59.158 45.455 0.00 0.00 0.00 2.57
704 788 3.315880 AGACTTTAGGCTAGATCGGGT 57.684 47.619 0.00 0.00 0.00 5.28
715 807 4.452455 CAGCCAGTGTGTTTAGACTTTAGG 59.548 45.833 0.00 0.00 0.00 2.69
774 866 5.542635 GGATGTAGGTGGATCCATGTACTAA 59.457 44.000 25.54 14.25 38.46 2.24
777 869 3.646162 TGGATGTAGGTGGATCCATGTAC 59.354 47.826 19.62 20.86 42.67 2.90
778 870 3.903714 CTGGATGTAGGTGGATCCATGTA 59.096 47.826 19.62 9.80 45.66 2.29
784 876 4.505742 GGAATTCCTGGATGTAGGTGGATC 60.506 50.000 17.73 0.00 38.99 3.36
816 908 1.751162 CTTCCTCTCCGGCGACTCT 60.751 63.158 9.30 0.00 0.00 3.24
817 909 1.749638 TCTTCCTCTCCGGCGACTC 60.750 63.158 9.30 0.00 0.00 3.36
818 910 2.047443 GTCTTCCTCTCCGGCGACT 61.047 63.158 9.30 0.00 33.09 4.18
819 911 2.490685 GTCTTCCTCTCCGGCGAC 59.509 66.667 9.30 0.00 0.00 5.19
820 912 3.132139 CGTCTTCCTCTCCGGCGA 61.132 66.667 9.30 0.00 0.00 5.54
821 913 3.132139 TCGTCTTCCTCTCCGGCG 61.132 66.667 0.00 0.00 0.00 6.46
822 914 2.490685 GTCGTCTTCCTCTCCGGC 59.509 66.667 0.00 0.00 0.00 6.13
823 915 1.303799 TTCGTCGTCTTCCTCTCCGG 61.304 60.000 0.00 0.00 0.00 5.14
824 916 0.097325 CTTCGTCGTCTTCCTCTCCG 59.903 60.000 0.00 0.00 0.00 4.63
825 917 1.451067 TCTTCGTCGTCTTCCTCTCC 58.549 55.000 0.00 0.00 0.00 3.71
826 918 2.743126 TCTTCTTCGTCGTCTTCCTCTC 59.257 50.000 0.00 0.00 0.00 3.20
909 1046 4.442733 GCTGTAGCTAACTATCGAAGCTTG 59.557 45.833 13.40 6.49 43.97 4.01
989 1150 0.250901 CCCCGCCATTGCTAGCTATT 60.251 55.000 17.23 0.00 34.43 1.73
990 1151 1.376466 CCCCGCCATTGCTAGCTAT 59.624 57.895 17.23 11.42 34.43 2.97
1457 1636 1.135170 TGTACGACACGTTGAACACCA 60.135 47.619 1.53 0.00 41.54 4.17
1918 2097 4.643387 AAGGCCACCGGTGAGCAC 62.643 66.667 36.07 25.42 0.00 4.40
2013 2192 2.894240 TATTGACGGCGCGGAAGTCC 62.894 60.000 22.76 0.00 34.24 3.85
2053 2232 1.157870 CCCGTGAACTTGTTGACGCT 61.158 55.000 17.34 0.00 0.00 5.07
2405 2584 1.078848 ATGTCGAGCACCTTGAGCC 60.079 57.895 0.00 0.00 0.00 4.70
2577 2756 1.490258 CTTCTCGTCGTCGTCGTCA 59.510 57.895 11.41 0.00 38.33 4.35
2579 2758 1.958205 ACCTTCTCGTCGTCGTCGT 60.958 57.895 11.41 0.00 38.33 4.34
2690 2869 3.411351 CGGTGAGGTTGTTCCGCG 61.411 66.667 0.00 0.00 41.99 6.46
2760 2939 1.511305 CGAGAAGCCGTTCCAGCTA 59.489 57.895 0.00 0.00 40.49 3.32
2804 2983 0.173708 GGACTCGAGGCTCGTCATTT 59.826 55.000 33.31 15.82 41.35 2.32
2805 2984 1.668101 GGGACTCGAGGCTCGTCATT 61.668 60.000 33.31 17.51 41.35 2.57
2868 3047 3.633094 GAAGCTGAGCCGCGTCAGA 62.633 63.158 25.70 0.00 46.02 3.27
2908 3087 2.027625 CGCCGGAGAGGTTGTTGTC 61.028 63.158 5.05 0.00 43.70 3.18
3062 3244 1.815421 CTCTTCCGGCCGTCATTGG 60.815 63.158 26.12 7.54 0.00 3.16
3075 3257 3.258290 GCACTAGCGGCGCTCTTC 61.258 66.667 39.97 21.28 40.44 2.87
3213 3395 2.087009 GGTGCTTTCCTCGTCGTCG 61.087 63.158 0.00 0.00 38.55 5.12
3277 3459 0.608308 TCCTCCTCTTCTTCGTCGCA 60.608 55.000 0.00 0.00 0.00 5.10
3339 3524 2.097918 CGGGACTCGTCGAAGTCG 59.902 66.667 10.38 0.00 45.45 4.18
3729 3926 1.344438 AGGATGTTGCTCGACTTCACA 59.656 47.619 5.77 0.00 0.00 3.58
4247 4447 5.297029 TGTCACAGCTAGCTACTGTAGTATG 59.703 44.000 18.86 4.23 46.44 2.39
4336 4542 8.896744 ACACATATCTTCATGTAAAATGTCAGG 58.103 33.333 0.00 0.00 37.02 3.86
4403 4659 7.201644 GCCGATTGAGATTTAACTGAATCTTGA 60.202 37.037 0.00 0.00 44.27 3.02
4411 4667 5.111989 TCTCAGCCGATTGAGATTTAACTG 58.888 41.667 12.86 0.00 46.42 3.16
4428 4684 0.105778 GGGTGTGGCTAGATCTCAGC 59.894 60.000 0.00 7.06 38.35 4.26
4464 4721 2.034104 TCTTGGATGTGATGCAGAGC 57.966 50.000 0.00 0.00 0.00 4.09
4493 4750 6.183360 GGGGAGTGTATTGCTTGTTCTTATTC 60.183 42.308 0.00 0.00 0.00 1.75
4531 4788 3.304123 CGAATAAAAGTGTTGCGGGTTGA 60.304 43.478 0.00 0.00 0.00 3.18
4536 4793 1.068885 TGGCGAATAAAAGTGTTGCGG 60.069 47.619 0.00 0.00 0.00 5.69
4537 4794 2.323939 TGGCGAATAAAAGTGTTGCG 57.676 45.000 0.00 0.00 0.00 4.85
4611 5547 2.275547 ATCCGTGCGGGTCGAAGTAC 62.276 60.000 10.94 0.00 37.00 2.73
4612 5548 1.597797 AATCCGTGCGGGTCGAAGTA 61.598 55.000 10.94 0.00 37.00 2.24
4613 5549 2.830704 GAATCCGTGCGGGTCGAAGT 62.831 60.000 10.94 0.00 37.00 3.01
4614 5550 2.125673 AATCCGTGCGGGTCGAAG 60.126 61.111 10.94 0.00 37.00 3.79
4616 5552 4.137872 GGAATCCGTGCGGGTCGA 62.138 66.667 10.94 0.00 37.00 4.20
4617 5553 3.943479 TTGGAATCCGTGCGGGTCG 62.943 63.158 10.94 0.00 37.00 4.79
4618 5554 1.644786 CTTTGGAATCCGTGCGGGTC 61.645 60.000 10.94 8.46 37.00 4.46
4619 5555 1.674322 CTTTGGAATCCGTGCGGGT 60.674 57.895 10.94 0.00 37.00 5.28
4623 5559 2.222027 CTATCCCTTTGGAATCCGTGC 58.778 52.381 0.00 0.00 45.98 5.34
4627 5563 5.952347 ACTTCAAACTATCCCTTTGGAATCC 59.048 40.000 0.00 0.00 45.98 3.01
4642 5578 4.405358 TCAAGGGCATCAAAACTTCAAACT 59.595 37.500 0.00 0.00 0.00 2.66
4643 5579 4.692228 TCAAGGGCATCAAAACTTCAAAC 58.308 39.130 0.00 0.00 0.00 2.93
4659 5595 7.770433 TCAGTCTGTCAATTATGTATTCAAGGG 59.230 37.037 0.00 0.00 0.00 3.95
4667 5603 7.222805 GCGAAAGATCAGTCTGTCAATTATGTA 59.777 37.037 0.00 0.00 38.43 2.29
4717 5669 0.729690 GCCGTGATTCCTTCTTCAGC 59.270 55.000 0.00 0.00 0.00 4.26
4727 5679 1.635663 CGTTCCAGGTGCCGTGATTC 61.636 60.000 0.00 0.00 0.00 2.52
4729 5681 1.899437 ATCGTTCCAGGTGCCGTGAT 61.899 55.000 0.00 0.00 0.00 3.06
4730 5682 2.107041 AATCGTTCCAGGTGCCGTGA 62.107 55.000 0.00 0.00 0.00 4.35
4747 5699 4.464008 ACGTCCATTATGGCAAGATCAAT 58.536 39.130 6.33 0.00 37.47 2.57
4748 5700 3.884895 ACGTCCATTATGGCAAGATCAA 58.115 40.909 6.33 0.00 37.47 2.57
4802 5754 0.793861 TTCGTTTCGATCGCAAAGGG 59.206 50.000 11.09 7.29 35.23 3.95
4813 5765 5.220416 CCAGTTTAGCTTATCCTTCGTTTCG 60.220 44.000 0.00 0.00 0.00 3.46
4819 5771 7.013369 CCCATAAACCAGTTTAGCTTATCCTTC 59.987 40.741 8.77 0.00 38.30 3.46
4820 5772 6.833933 CCCATAAACCAGTTTAGCTTATCCTT 59.166 38.462 8.77 0.00 38.30 3.36
4836 5788 7.226128 CGACTATTAGTCCTTTTCCCATAAACC 59.774 40.741 16.36 0.00 42.12 3.27
4860 5812 6.692249 GGAAAAACGAGTATTTGGAAAAACGA 59.308 34.615 0.00 0.00 0.00 3.85
4862 5814 6.074729 CCGGAAAAACGAGTATTTGGAAAAAC 60.075 38.462 0.00 0.00 35.47 2.43
4950 5902 2.835764 TCCTGTTTAGGCATCTAACCGT 59.164 45.455 0.00 0.00 44.22 4.83
4951 5903 3.536956 TCCTGTTTAGGCATCTAACCG 57.463 47.619 0.00 0.00 44.22 4.44
4960 5912 2.614829 TCCGCTAATCCTGTTTAGGC 57.385 50.000 0.00 0.00 44.22 3.93
4969 5921 2.758423 ACCAAACCAATTCCGCTAATCC 59.242 45.455 0.00 0.00 0.00 3.01
4976 5928 5.968848 CGATTGTTATACCAAACCAATTCCG 59.031 40.000 0.00 0.00 0.00 4.30
4981 5933 7.110810 TGGATACGATTGTTATACCAAACCAA 58.889 34.615 0.00 0.00 42.51 3.67
4985 5938 8.563123 TGTTTGGATACGATTGTTATACCAAA 57.437 30.769 15.32 15.32 41.63 3.28
4996 5949 2.706890 AGGCGTTGTTTGGATACGATT 58.293 42.857 0.00 0.00 37.47 3.34
5002 5955 2.858745 ACACTAAGGCGTTGTTTGGAT 58.141 42.857 0.97 0.00 0.00 3.41
5045 5998 6.382859 TGAGTATCATAGGTAGGCAACTTTGA 59.617 38.462 0.00 0.00 44.68 2.69
5079 6032 5.313520 TGGCACACAACTTTCATCATATG 57.686 39.130 0.00 0.00 0.00 1.78
5110 6063 8.487028 ACCTAGCAAGTATATTGTAGAAAGCTT 58.513 33.333 0.00 0.00 0.00 3.74
5111 6064 7.928706 CACCTAGCAAGTATATTGTAGAAAGCT 59.071 37.037 0.00 0.00 0.00 3.74
5113 6066 9.817809 TTCACCTAGCAAGTATATTGTAGAAAG 57.182 33.333 0.00 0.00 0.00 2.62
5135 6088 8.479313 TGAATCATGTGTACTAGTGAATTCAC 57.521 34.615 27.69 27.69 46.77 3.18
5191 6148 3.046390 CAACTTCGATGATAGACGAGGC 58.954 50.000 5.16 0.00 38.75 4.70
5196 6153 9.825972 TTTTCAAAATCAACTTCGATGATAGAC 57.174 29.630 5.16 0.00 36.53 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.