Multiple sequence alignment - TraesCS6B01G060200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G060200 chr6B 100.000 7928 0 0 1 7928 39758465 39766392 0.000000e+00 14641.0
1 TraesCS6B01G060200 chr6B 83.069 378 32 15 64 415 39429030 39429401 1.660000e-81 315.0
2 TraesCS6B01G060200 chr6B 88.182 110 9 3 679 785 32295747 32295639 2.320000e-25 128.0
3 TraesCS6B01G060200 chr6B 89.474 76 6 2 2191 2266 679544186 679544259 2.360000e-15 95.3
4 TraesCS6B01G060200 chr6B 83.019 106 13 2 419 524 39429697 39429797 3.050000e-14 91.6
5 TraesCS6B01G060200 chr6D 93.502 4186 182 40 3797 7928 24442292 24446441 0.000000e+00 6141.0
6 TraesCS6B01G060200 chr6D 89.851 3281 262 40 549 3798 24438885 24442125 0.000000e+00 4148.0
7 TraesCS6B01G060200 chr6D 90.885 373 14 7 68 422 24361670 24361300 4.300000e-132 483.0
8 TraesCS6B01G060200 chr6D 84.492 374 34 11 64 419 24295694 24295327 1.640000e-91 348.0
9 TraesCS6B01G060200 chr6D 86.731 309 25 8 421 723 24361009 24360711 5.930000e-86 329.0
10 TraesCS6B01G060200 chr6D 90.698 129 10 2 40 167 24405822 24405949 3.800000e-38 171.0
11 TraesCS6B01G060200 chr6D 91.667 120 9 1 47 166 24322872 24322754 1.770000e-36 165.0
12 TraesCS6B01G060200 chr6D 89.815 108 10 1 679 786 379851253 379851147 3.860000e-28 137.0
13 TraesCS6B01G060200 chr6D 88.991 109 8 4 674 781 17887823 17887718 1.800000e-26 132.0
14 TraesCS6B01G060200 chr6D 90.476 84 6 2 2185 2267 60324162 60324080 8.410000e-20 110.0
15 TraesCS6B01G060200 chr6D 87.209 86 9 2 193 278 24350357 24350274 6.550000e-16 97.1
16 TraesCS6B01G060200 chr6A 94.136 3189 143 29 4091 7250 23436160 23432987 0.000000e+00 4813.0
17 TraesCS6B01G060200 chr6A 86.746 3018 296 51 925 3886 23439447 23436478 0.000000e+00 3262.0
18 TraesCS6B01G060200 chr6A 88.905 694 51 10 7237 7928 23432958 23432289 0.000000e+00 832.0
19 TraesCS6B01G060200 chr6A 84.472 322 28 15 630 941 23439771 23439462 1.670000e-76 298.0
20 TraesCS6B01G060200 chr6A 82.500 360 42 15 64 417 22989918 22990262 6.020000e-76 296.0
21 TraesCS6B01G060200 chr6A 90.566 106 6 3 674 778 18580888 18580786 3.860000e-28 137.0
22 TraesCS6B01G060200 chr6A 92.208 77 5 1 2191 2267 417484245 417484320 3.030000e-19 108.0
23 TraesCS6B01G060200 chr4D 89.381 113 10 2 688 800 427324540 427324430 2.980000e-29 141.0
24 TraesCS6B01G060200 chr4D 92.683 82 4 2 1 81 614593 614513 5.030000e-22 117.0
25 TraesCS6B01G060200 chr4A 88.496 113 11 2 690 802 38659332 38659442 1.390000e-27 135.0
26 TraesCS6B01G060200 chr4B 88.393 112 9 4 690 800 522685236 522685128 1.800000e-26 132.0
27 TraesCS6B01G060200 chr7B 94.872 78 3 1 1 77 489143559 489143482 3.890000e-23 121.0
28 TraesCS6B01G060200 chr1D 96.000 75 2 1 3 77 493640721 493640648 3.890000e-23 121.0
29 TraesCS6B01G060200 chr5D 95.946 74 2 1 3 76 544234747 544234819 1.400000e-22 119.0
30 TraesCS6B01G060200 chr5D 87.179 78 10 0 2190 2267 474809777 474809700 1.100000e-13 89.8
31 TraesCS6B01G060200 chrUn 95.833 72 3 0 1 72 50320504 50320433 5.030000e-22 117.0
32 TraesCS6B01G060200 chrUn 95.833 72 3 0 1 72 421528506 421528435 5.030000e-22 117.0
33 TraesCS6B01G060200 chr7A 85.714 112 14 2 2188 2299 34791155 34791046 5.030000e-22 117.0
34 TraesCS6B01G060200 chr7A 93.506 77 4 1 1 77 109344932 109344857 6.500000e-21 113.0
35 TraesCS6B01G060200 chr3D 94.667 75 3 1 1 75 591207926 591207999 1.810000e-21 115.0
36 TraesCS6B01G060200 chr3D 93.506 77 4 1 1 77 335367386 335367311 6.500000e-21 113.0
37 TraesCS6B01G060200 chr3B 91.026 78 7 0 2190 2267 733267554 733267477 1.090000e-18 106.0
38 TraesCS6B01G060200 chr7D 89.024 82 5 2 2191 2268 181012671 181012590 1.820000e-16 99.0
39 TraesCS6B01G060200 chr7D 88.462 78 7 2 2191 2267 202415047 202414971 8.470000e-15 93.5
40 TraesCS6B01G060200 chr5A 88.608 79 8 1 2191 2268 527908541 527908463 2.360000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G060200 chr6B 39758465 39766392 7927 False 14641.00 14641 100.00000 1 7928 1 chr6B.!!$F1 7927
1 TraesCS6B01G060200 chr6B 39429030 39429797 767 False 203.30 315 83.04400 64 524 2 chr6B.!!$F3 460
2 TraesCS6B01G060200 chr6D 24438885 24446441 7556 False 5144.50 6141 91.67650 549 7928 2 chr6D.!!$F2 7379
3 TraesCS6B01G060200 chr6D 24360711 24361670 959 True 406.00 483 88.80800 68 723 2 chr6D.!!$R7 655
4 TraesCS6B01G060200 chr6A 23432289 23439771 7482 True 2301.25 4813 88.56475 630 7928 4 chr6A.!!$R2 7298

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
454 781 0.179048 TATGGTCAATGCTGGCTCGG 60.179 55.0 0.00 0.0 0.00 4.63 F
2040 2461 0.034896 ACACCACCATCGTTCCACTC 59.965 55.0 0.00 0.0 0.00 3.51 F
3175 3601 0.105760 AGATCCAGGCTCATCGGAGT 60.106 55.0 0.00 0.0 43.37 3.85 F
3451 3878 0.104409 ATGGGAGGTGATAGGGGGAC 60.104 60.0 0.00 0.0 0.00 4.46 F
3458 3885 0.384669 GTGATAGGGGGACGAGAACG 59.615 60.0 0.00 0.0 45.75 3.95 F
5227 5974 0.947960 TTGTCCAACCGACGTACGTA 59.052 50.0 22.87 0.0 45.23 3.57 F
5958 6719 0.476771 GGTGGTGAGAAGGGGTTCAA 59.523 55.0 0.00 0.0 0.00 2.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2371 2795 0.109342 AGTGCTTAGCCTGTGCAAGT 59.891 50.000 0.29 0.0 41.13 3.16 R
3236 3662 0.032615 AAAACTCCCTTGTGGTGGCA 60.033 50.000 0.00 0.0 34.77 4.92 R
4260 4990 1.456518 CTCATCCTCCTCGCCCTCA 60.457 63.158 0.00 0.0 0.00 3.86 R
4737 5482 4.487714 TGAACACCAGTTGAGTCTTTCT 57.512 40.909 0.00 0.0 38.30 2.52 R
5407 6162 4.763793 CACAGGAATCTCCAAACACAAGAT 59.236 41.667 0.00 0.0 39.61 2.40 R
6093 6862 0.108585 AAAGACCATGGCGTCAGTGT 59.891 50.000 13.04 0.0 35.07 3.55 R
7467 8285 1.142870 GGATCCCCGAAACATGATGGA 59.857 52.381 0.00 0.0 0.00 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 60 9.720769 AATCTAAGACAAGAATTTTAAGACGGA 57.279 29.630 0.00 0.00 0.00 4.69
60 61 8.758633 TCTAAGACAAGAATTTTAAGACGGAG 57.241 34.615 0.00 0.00 0.00 4.63
61 62 6.803154 AAGACAAGAATTTTAAGACGGAGG 57.197 37.500 0.00 0.00 0.00 4.30
62 63 5.246307 AGACAAGAATTTTAAGACGGAGGG 58.754 41.667 0.00 0.00 0.00 4.30
82 83 6.867293 GGAGGGAGTAGTATAATAAAGCAACG 59.133 42.308 0.00 0.00 0.00 4.10
126 127 9.935241 CTGTTATGTATCCTTATCTTAGCACAT 57.065 33.333 0.00 0.00 0.00 3.21
135 136 6.156949 TCCTTATCTTAGCACATGTTCCTTCT 59.843 38.462 0.00 0.00 0.00 2.85
188 189 4.096984 GTGCAGGGAAAATATGAGTTCAGG 59.903 45.833 0.00 0.00 0.00 3.86
189 190 3.633986 GCAGGGAAAATATGAGTTCAGGG 59.366 47.826 0.00 0.00 0.00 4.45
360 387 4.216902 TGACAATGATGCAGAACCTGAAAG 59.783 41.667 0.00 0.00 32.44 2.62
384 411 3.513515 TGCTCTGGAAGTTTTGTTGGTTT 59.486 39.130 0.00 0.00 33.76 3.27
415 442 3.474600 CATCTGCTTCTGATACAAGGGG 58.525 50.000 0.00 0.00 0.00 4.79
454 781 0.179048 TATGGTCAATGCTGGCTCGG 60.179 55.000 0.00 0.00 0.00 4.63
467 794 2.995872 GCTCGGTGAGAACGGCTCT 61.996 63.158 8.68 0.00 44.27 4.09
476 803 2.477506 GAGAACGGCTCTGCTTTTGCT 61.478 52.381 0.84 0.00 40.47 3.91
488 815 1.172175 CTTTTGCTCCTGCTCTTCCC 58.828 55.000 0.00 0.00 40.48 3.97
528 855 6.753107 ATTAATAGTTTCCACTTTCCGGTG 57.247 37.500 0.00 0.00 34.06 4.94
537 864 3.702045 TCCACTTTCCGGTGTTGAAATTT 59.298 39.130 0.00 0.00 35.63 1.82
538 865 4.160626 TCCACTTTCCGGTGTTGAAATTTT 59.839 37.500 0.00 0.00 35.63 1.82
539 866 5.360144 TCCACTTTCCGGTGTTGAAATTTTA 59.640 36.000 0.00 0.00 35.63 1.52
540 867 5.689961 CCACTTTCCGGTGTTGAAATTTTAG 59.310 40.000 0.00 0.00 35.63 1.85
544 871 2.353307 CCGGTGTTGAAATTTTAGCCCC 60.353 50.000 0.00 0.00 0.00 5.80
545 872 2.353307 CGGTGTTGAAATTTTAGCCCCC 60.353 50.000 0.00 0.00 0.00 5.40
612 940 2.200067 TGACAAAATGCAGCAAAACGG 58.800 42.857 0.00 0.00 0.00 4.44
778 1118 1.610522 GCCACTCTGATTGCTGTTGTT 59.389 47.619 0.00 0.00 0.00 2.83
779 1119 2.813754 GCCACTCTGATTGCTGTTGTTA 59.186 45.455 0.00 0.00 0.00 2.41
781 1121 4.673580 GCCACTCTGATTGCTGTTGTTATG 60.674 45.833 0.00 0.00 0.00 1.90
787 1127 5.412594 TCTGATTGCTGTTGTTATGGTTCTC 59.587 40.000 0.00 0.00 0.00 2.87
824 1164 3.175438 AGCTTATTTGGCCTGTTCCTT 57.825 42.857 3.32 0.00 0.00 3.36
885 1231 1.442148 GCCCGGCCTTCTACTACAG 59.558 63.158 0.00 0.00 0.00 2.74
886 1232 2.029307 GCCCGGCCTTCTACTACAGG 62.029 65.000 0.00 0.00 0.00 4.00
910 1256 3.464494 GCCCAATCCAGCCCAAGC 61.464 66.667 0.00 0.00 40.32 4.01
942 1326 0.868406 CAAGAGTTTCGCGGCTTTCT 59.132 50.000 6.13 2.03 0.00 2.52
943 1327 0.868406 AAGAGTTTCGCGGCTTTCTG 59.132 50.000 6.13 0.00 0.00 3.02
980 1373 0.854218 TCGCCTTATCCTCCTCCTCT 59.146 55.000 0.00 0.00 0.00 3.69
1001 1394 0.591236 CGCAAAACCAACCAGTCACG 60.591 55.000 0.00 0.00 0.00 4.35
1249 1657 4.811557 CGAGGGTAATGTCCAAAATCTCTC 59.188 45.833 0.00 0.00 0.00 3.20
1301 1716 4.302455 CGGATTTATGTCAGCTGTAGAGG 58.698 47.826 14.67 0.00 0.00 3.69
1318 1733 1.537202 GAGGCAATGTTCAGCGTTCTT 59.463 47.619 0.00 0.00 0.00 2.52
1319 1734 1.267806 AGGCAATGTTCAGCGTTCTTG 59.732 47.619 0.00 0.00 0.00 3.02
1320 1735 1.001378 GGCAATGTTCAGCGTTCTTGT 60.001 47.619 0.00 0.00 0.00 3.16
1321 1736 2.046313 GCAATGTTCAGCGTTCTTGTG 58.954 47.619 0.00 0.00 0.00 3.33
1322 1737 2.046313 CAATGTTCAGCGTTCTTGTGC 58.954 47.619 0.00 0.00 0.00 4.57
1323 1738 0.235665 ATGTTCAGCGTTCTTGTGCG 59.764 50.000 0.00 0.00 35.87 5.34
1325 1740 0.303493 GTTCAGCGTTCTTGTGCGAA 59.697 50.000 0.00 0.00 35.87 4.70
1327 1742 0.512518 TCAGCGTTCTTGTGCGAATG 59.487 50.000 0.00 0.00 35.87 2.67
1328 1743 3.741058 GCGTTCTTGTGCGAATGC 58.259 55.556 2.46 2.46 45.35 3.56
1364 1779 3.813166 CGGTAAATATTGGTCGCCTGAAT 59.187 43.478 0.00 0.00 0.00 2.57
1378 1797 3.681594 CGCCTGAATAGTGGGTACATGTT 60.682 47.826 2.30 0.00 0.00 2.71
1379 1798 4.442332 CGCCTGAATAGTGGGTACATGTTA 60.442 45.833 2.30 0.00 0.00 2.41
1382 1801 6.546034 GCCTGAATAGTGGGTACATGTTATTT 59.454 38.462 2.30 0.00 0.00 1.40
1383 1802 7.255139 GCCTGAATAGTGGGTACATGTTATTTC 60.255 40.741 2.30 0.00 0.00 2.17
1460 1879 1.652563 GTGAAAACCGTCACAGCCC 59.347 57.895 0.55 0.00 46.00 5.19
1465 1884 4.954118 ACCGTCACAGCCCAGGGA 62.954 66.667 10.89 0.00 0.00 4.20
1477 1897 1.687612 CCAGGGAATCAGGCACACT 59.312 57.895 0.00 0.00 0.00 3.55
1568 1988 3.510459 TCATCACTTCTCTGGTTCTCCA 58.490 45.455 0.00 0.00 42.05 3.86
1569 1989 3.259374 TCATCACTTCTCTGGTTCTCCAC 59.741 47.826 0.00 0.00 39.03 4.02
1573 1993 1.203523 CTTCTCTGGTTCTCCACGAGG 59.796 57.143 0.00 0.00 39.03 4.63
1578 1998 1.118965 TGGTTCTCCACGAGGAAGCA 61.119 55.000 2.41 2.12 45.19 3.91
1605 2025 1.217882 CTTCTCTGCAAACGTCCGTT 58.782 50.000 0.00 0.00 40.45 4.44
1616 2036 2.943653 GTCCGTTGACAAAGCCCG 59.056 61.111 0.00 0.00 41.37 6.13
1639 2059 2.659016 CAGAGGGCGTGAGAAGCA 59.341 61.111 0.00 0.00 36.08 3.91
1640 2060 1.739562 CAGAGGGCGTGAGAAGCAC 60.740 63.158 0.00 0.00 44.21 4.40
1648 2068 1.081892 CGTGAGAAGCACCATGAAGG 58.918 55.000 0.00 0.00 44.85 3.46
1660 2080 1.406539 CCATGAAGGTACATGCCAAGC 59.593 52.381 0.00 0.00 44.11 4.01
1661 2081 1.406539 CATGAAGGTACATGCCAAGCC 59.593 52.381 0.00 0.00 40.54 4.35
1673 2093 2.693762 CCAAGCCATCAGCCACACG 61.694 63.158 0.00 0.00 45.47 4.49
1703 2123 1.751733 CGGTGCATCCCCAATTCTGAT 60.752 52.381 0.00 0.00 0.00 2.90
1706 2126 3.435601 GGTGCATCCCCAATTCTGATAGT 60.436 47.826 0.00 0.00 0.00 2.12
1725 2145 7.652727 TGATAGTGAGATACGAAGGAGAAATG 58.347 38.462 0.00 0.00 0.00 2.32
1733 2153 1.135575 CGAAGGAGAAATGTGCAAGGC 60.136 52.381 0.00 0.00 0.00 4.35
1738 2158 0.112995 AGAAATGTGCAAGGCTGGGA 59.887 50.000 0.00 0.00 0.00 4.37
1751 2171 1.982073 GCTGGGACCGCAAAAGATCG 61.982 60.000 0.00 0.00 0.00 3.69
1757 2177 1.024579 ACCGCAAAAGATCGCCGAAT 61.025 50.000 0.00 0.00 0.00 3.34
1759 2179 1.196130 CGCAAAAGATCGCCGAATGC 61.196 55.000 0.00 0.00 0.00 3.56
1765 2185 2.823829 GATCGCCGAATGCACCACC 61.824 63.158 0.00 0.00 41.33 4.61
1797 2217 1.351076 TCATCACCAACTGAGCTCCA 58.649 50.000 12.15 0.00 30.20 3.86
1847 2267 5.559770 TGAACAAACTGAGATAATCCAGCA 58.440 37.500 0.00 0.00 33.90 4.41
1852 2272 5.627182 AACTGAGATAATCCAGCAGACAT 57.373 39.130 0.00 0.00 33.90 3.06
1896 2316 2.061773 CATTGCCGGTATCTCGACATC 58.938 52.381 1.90 0.00 0.00 3.06
1913 2333 2.613739 ATCGCTCACCACCGTCATCG 62.614 60.000 0.00 0.00 0.00 3.84
1918 2338 1.667830 CACCACCGTCATCGTTGCT 60.668 57.895 0.00 0.00 35.01 3.91
1921 2341 0.389296 CCACCGTCATCGTTGCTACA 60.389 55.000 0.00 0.00 35.01 2.74
1928 2348 2.949909 ATCGTTGCTACACCCGCCA 61.950 57.895 0.00 0.00 0.00 5.69
2033 2454 1.107114 TGCAAAAACACCACCATCGT 58.893 45.000 0.00 0.00 0.00 3.73
2035 2456 2.124122 GCAAAAACACCACCATCGTTC 58.876 47.619 0.00 0.00 0.00 3.95
2037 2458 2.060050 AAAACACCACCATCGTTCCA 57.940 45.000 0.00 0.00 0.00 3.53
2038 2459 1.314730 AAACACCACCATCGTTCCAC 58.685 50.000 0.00 0.00 0.00 4.02
2039 2460 0.472471 AACACCACCATCGTTCCACT 59.528 50.000 0.00 0.00 0.00 4.00
2040 2461 0.034896 ACACCACCATCGTTCCACTC 59.965 55.000 0.00 0.00 0.00 3.51
2042 2463 1.125093 ACCACCATCGTTCCACTCCA 61.125 55.000 0.00 0.00 0.00 3.86
2084 2506 0.944386 CGTGGTTGTCTGGTTGGAAG 59.056 55.000 0.00 0.00 0.00 3.46
2091 2513 0.606673 GTCTGGTTGGAAGGGTGAGC 60.607 60.000 0.00 0.00 0.00 4.26
2092 2514 1.059584 TCTGGTTGGAAGGGTGAGCA 61.060 55.000 0.00 0.00 0.00 4.26
2093 2515 0.178992 CTGGTTGGAAGGGTGAGCAA 60.179 55.000 0.00 0.00 0.00 3.91
2156 2578 3.003173 CGTTGCCTCTCCCCCTCA 61.003 66.667 0.00 0.00 0.00 3.86
2179 2601 1.954382 GTTGTTTGGGAGGAAGGACAC 59.046 52.381 0.00 0.00 0.00 3.67
2180 2602 1.217916 TGTTTGGGAGGAAGGACACA 58.782 50.000 0.00 0.00 0.00 3.72
2183 2605 1.217916 TTGGGAGGAAGGACACACAA 58.782 50.000 0.00 0.00 0.00 3.33
2190 2612 2.439507 AGGAAGGACACACAACACATCT 59.560 45.455 0.00 0.00 0.00 2.90
2326 2749 3.555586 GGCACTGGAAAGCAAACATCAAT 60.556 43.478 0.00 0.00 0.00 2.57
2439 2863 0.179062 GAGCAGTAGGGCAGGACATG 60.179 60.000 0.00 0.00 35.83 3.21
2459 2883 0.394352 GCCGACCATTGAAGGTGGAT 60.394 55.000 0.00 0.00 43.38 3.41
2462 2886 2.485479 CCGACCATTGAAGGTGGATAGG 60.485 54.545 0.00 0.00 43.38 2.57
2463 2887 2.170607 CGACCATTGAAGGTGGATAGGT 59.829 50.000 0.00 0.00 43.38 3.08
2477 2901 1.413077 GATAGGTCACCAGGTAGCACC 59.587 57.143 0.00 6.47 38.99 5.01
2512 2936 3.594134 GACACACCATCTTCCTTCTCTG 58.406 50.000 0.00 0.00 0.00 3.35
2558 2983 0.391130 CCTTGGATCGAAAGACGCCA 60.391 55.000 8.05 0.00 46.97 5.69
2588 3013 2.224402 GGATTCGGGCTAGAAGAATGCT 60.224 50.000 14.65 0.00 38.89 3.79
2619 3044 1.603455 CAAGGTGGACAACGGGCAT 60.603 57.895 0.00 0.00 0.00 4.40
2704 3130 0.541863 GGAGAGCTTCCGGAATCCAA 59.458 55.000 23.81 1.24 35.91 3.53
2776 3202 1.335142 GGGATAGAGCATCGACGACAC 60.335 57.143 0.00 0.00 42.67 3.67
2806 3232 1.080705 CACCTCCGACTTCCGTCAC 60.081 63.158 0.00 0.00 40.23 3.67
2807 3233 1.529948 ACCTCCGACTTCCGTCACA 60.530 57.895 0.00 0.00 40.23 3.58
2818 3244 2.649034 CGTCACACCACTACCGCT 59.351 61.111 0.00 0.00 0.00 5.52
2819 3245 1.588824 CCGTCACACCACTACCGCTA 61.589 60.000 0.00 0.00 0.00 4.26
2826 3252 0.333993 ACCACTACCGCTAGGAAGGA 59.666 55.000 0.00 0.00 41.02 3.36
2914 3340 1.903877 CGGAGAGCACCAACCTCCAT 61.904 60.000 0.00 0.00 45.09 3.41
2923 3349 3.545703 CACCAACCTCCATATCCTTGAC 58.454 50.000 0.00 0.00 0.00 3.18
2947 3373 1.609072 GCCTTCAAGAAGAAAGCGGTT 59.391 47.619 11.25 0.00 40.79 4.44
2960 3386 0.449388 AGCGGTTCCTAAGTACGTCG 59.551 55.000 0.00 0.00 0.00 5.12
3027 3453 2.156098 TTGCCTTGCTCTCCACCCT 61.156 57.895 0.00 0.00 0.00 4.34
3030 3456 1.614824 CCTTGCTCTCCACCCTCCT 60.615 63.158 0.00 0.00 0.00 3.69
3038 3464 0.545309 CTCCACCCTCCTGAACCTCA 60.545 60.000 0.00 0.00 0.00 3.86
3064 3490 0.984995 GCTGGACCACTAAACTCCCT 59.015 55.000 0.00 0.00 0.00 4.20
3069 3495 0.981943 ACCACTAAACTCCCTTCCCG 59.018 55.000 0.00 0.00 0.00 5.14
3070 3496 0.981943 CCACTAAACTCCCTTCCCGT 59.018 55.000 0.00 0.00 0.00 5.28
3085 3511 1.082117 CCCGTACCGTTTGCAGCTAG 61.082 60.000 0.00 0.00 0.00 3.42
3144 3570 4.502604 GGCCCGCATAATCTACAACTAGAA 60.503 45.833 0.00 0.00 32.49 2.10
3151 3577 9.046296 CGCATAATCTACAACTAGAAAAGGATT 57.954 33.333 0.00 3.84 32.49 3.01
3175 3601 0.105760 AGATCCAGGCTCATCGGAGT 60.106 55.000 0.00 0.00 43.37 3.85
3183 3609 1.815196 CTCATCGGAGTCTGCTGCT 59.185 57.895 0.00 0.00 36.36 4.24
3229 3655 0.753262 CGTAGCCAAGCCAGTAGGAT 59.247 55.000 0.00 0.00 36.89 3.24
3236 3662 1.066858 CAAGCCAGTAGGATGTCGTGT 60.067 52.381 0.00 0.00 36.89 4.49
3254 3680 0.755327 GTGCCACCACAAGGGAGTTT 60.755 55.000 0.00 0.00 41.67 2.66
3318 3744 1.072159 AGTGAGGAAGCCACTGCAC 59.928 57.895 0.00 0.00 42.68 4.57
3340 3766 1.845627 ATCCACTCCAGGCCTGTGTG 61.846 60.000 32.39 32.39 34.90 3.82
3370 3796 2.423446 CCGATGTAGAGCAGCCCC 59.577 66.667 0.00 0.00 0.00 5.80
3450 3877 0.193574 GATGGGAGGTGATAGGGGGA 59.806 60.000 0.00 0.00 0.00 4.81
3451 3878 0.104409 ATGGGAGGTGATAGGGGGAC 60.104 60.000 0.00 0.00 0.00 4.46
3453 3880 1.232216 GGAGGTGATAGGGGGACGA 59.768 63.158 0.00 0.00 0.00 4.20
3454 3881 0.828343 GGAGGTGATAGGGGGACGAG 60.828 65.000 0.00 0.00 0.00 4.18
3456 3883 0.635009 AGGTGATAGGGGGACGAGAA 59.365 55.000 0.00 0.00 0.00 2.87
3457 3884 0.751452 GGTGATAGGGGGACGAGAAC 59.249 60.000 0.00 0.00 0.00 3.01
3458 3885 0.384669 GTGATAGGGGGACGAGAACG 59.615 60.000 0.00 0.00 45.75 3.95
3474 3901 3.966543 CGTGGGTTTGGGCTCCCT 61.967 66.667 6.50 0.00 43.74 4.20
3475 3902 2.598787 CGTGGGTTTGGGCTCCCTA 61.599 63.158 6.50 0.00 43.74 3.53
3479 3906 1.378646 GGTTTGGGCTCCCTAGTGC 60.379 63.158 6.50 0.00 36.94 4.40
3484 3911 2.674220 GGGCTCCCTAGTGCTGCTT 61.674 63.158 0.00 0.00 32.98 3.91
3486 3913 1.599047 GCTCCCTAGTGCTGCTTGA 59.401 57.895 0.00 0.00 0.00 3.02
3543 3991 6.748132 ACATGTTTGGATTGTGTTTTAGAGG 58.252 36.000 0.00 0.00 0.00 3.69
3620 4068 4.142249 GGGCTGTTGGGAATATGTTTGTAC 60.142 45.833 0.00 0.00 0.00 2.90
3764 4212 9.981114 ATTCTGAAATTTAAACCAGTTTCGAAT 57.019 25.926 0.00 16.11 34.23 3.34
3792 4240 7.016153 AGTCCAGATTAAACTACCAATCACA 57.984 36.000 0.00 0.00 34.28 3.58
3861 4477 4.760204 TGAGCAATCATCATGATCATGTCC 59.240 41.667 30.01 14.16 38.20 4.02
3879 4495 5.581126 TGTCCAAATTCCACTAATCATGC 57.419 39.130 0.00 0.00 0.00 4.06
3880 4496 5.263599 TGTCCAAATTCCACTAATCATGCT 58.736 37.500 0.00 0.00 0.00 3.79
3886 4502 2.905075 TCCACTAATCATGCTTGTCGG 58.095 47.619 0.00 0.00 0.00 4.79
3893 4509 6.146184 CACTAATCATGCTTGTCGGTATTAGG 59.854 42.308 16.04 7.12 32.36 2.69
3974 4590 8.570488 TCTTCCAATAGCATGCAAAGTATATTG 58.430 33.333 21.98 20.85 32.81 1.90
4006 4622 8.765219 CATTCATAATCGACCAGTTACCTTAAG 58.235 37.037 0.00 0.00 0.00 1.85
4007 4623 6.278363 TCATAATCGACCAGTTACCTTAAGC 58.722 40.000 0.00 0.00 0.00 3.09
4017 4633 9.780186 GACCAGTTACCTTAAGCATATAGAATT 57.220 33.333 0.00 0.00 0.00 2.17
4067 4683 6.061022 TCCCATGCTGAGTAAGTAAATCAA 57.939 37.500 0.00 0.00 0.00 2.57
4077 4693 9.844790 CTGAGTAAGTAAATCAATTTCATGCAA 57.155 29.630 0.00 0.00 0.00 4.08
4138 4867 9.716507 AATATTAAATTTTGTTGGATCGAGTCG 57.283 29.630 6.09 6.09 0.00 4.18
4157 4886 2.743664 TCGATTCATGCAAGTCTTGTGG 59.256 45.455 14.03 4.52 0.00 4.17
4293 5023 3.776969 AGGATGAGTCTTCAGGTGCATAA 59.223 43.478 8.18 0.00 36.61 1.90
4360 5092 5.076182 TCTTATTTGTTGGCATGTTCTGGA 58.924 37.500 0.00 0.00 0.00 3.86
4540 5273 6.209391 ACCCAATTTCTTCTGTATTCTTGTGG 59.791 38.462 0.00 0.00 0.00 4.17
4548 5281 6.381133 TCTTCTGTATTCTTGTGGCTATGAGA 59.619 38.462 0.00 0.00 0.00 3.27
4549 5282 5.907207 TCTGTATTCTTGTGGCTATGAGAC 58.093 41.667 0.00 0.00 0.00 3.36
4706 5451 9.382275 AGTGTTATTTCTGCAAATTCTTTTTGT 57.618 25.926 0.00 0.00 33.95 2.83
4877 5624 5.621197 AAATTGCGTATGTACAGCTTGAA 57.379 34.783 0.33 0.00 0.00 2.69
4881 5628 6.918892 TTGCGTATGTACAGCTTGAATAAT 57.081 33.333 0.33 0.00 0.00 1.28
5227 5974 0.947960 TTGTCCAACCGACGTACGTA 59.052 50.000 22.87 0.00 45.23 3.57
5249 5996 6.524239 CGTATCCACTCAATGTTCATTGTTTG 59.476 38.462 20.23 17.48 33.49 2.93
5334 6082 5.756347 TGCTTGTCACATAAACGAGTTACTT 59.244 36.000 0.00 0.00 31.79 2.24
5343 6091 6.589139 ACATAAACGAGTTACTTAAGCTCACC 59.411 38.462 1.29 0.00 0.00 4.02
5358 6113 4.890088 AGCTCACCGTTTGATGTTAGTAA 58.110 39.130 0.00 0.00 32.17 2.24
5404 6159 3.252215 CACCTTTTGGCGTTATTGAGACA 59.748 43.478 0.00 0.00 45.59 3.41
5407 6162 4.155826 CCTTTTGGCGTTATTGAGACATGA 59.844 41.667 0.00 0.00 0.00 3.07
5456 6211 4.458397 CATGAGGTTTATCCATGCAGACT 58.542 43.478 0.00 0.00 39.02 3.24
5467 6222 4.965814 TCCATGCAGACTTATGAGAATCC 58.034 43.478 0.00 0.00 0.00 3.01
5475 6230 7.882791 TGCAGACTTATGAGAATCCAAAGTTTA 59.117 33.333 0.00 0.00 0.00 2.01
5596 6357 2.693074 TCCTTGTGGCAAAAAGTTCTCC 59.307 45.455 9.57 0.00 0.00 3.71
5599 6360 1.946768 TGTGGCAAAAAGTTCTCCTCG 59.053 47.619 0.00 0.00 0.00 4.63
5611 6372 1.195115 TCTCCTCGGCATACAAAGCT 58.805 50.000 0.00 0.00 0.00 3.74
5631 6392 3.613432 GCTTTGATTGCCTTGACCTTCTG 60.613 47.826 0.00 0.00 0.00 3.02
5639 6400 2.159114 GCCTTGACCTTCTGTTGCAAAA 60.159 45.455 0.00 0.00 0.00 2.44
5678 6439 5.310409 TCTTTTCTGACCAGATTGACCTT 57.690 39.130 0.01 0.00 37.29 3.50
5958 6719 0.476771 GGTGGTGAGAAGGGGTTCAA 59.523 55.000 0.00 0.00 0.00 2.69
5965 6726 4.082949 GGTGAGAAGGGGTTCAATTTTACG 60.083 45.833 0.00 0.00 0.00 3.18
5975 6736 4.945543 GGTTCAATTTTACGGAGGTACCAT 59.054 41.667 15.94 0.00 38.90 3.55
5976 6737 6.114767 GGTTCAATTTTACGGAGGTACCATA 58.885 40.000 15.94 0.00 38.90 2.74
5977 6738 6.598850 GGTTCAATTTTACGGAGGTACCATAA 59.401 38.462 15.94 4.36 38.90 1.90
5978 6739 7.414429 GGTTCAATTTTACGGAGGTACCATAAC 60.414 40.741 15.94 2.31 38.90 1.89
5979 6740 6.114767 TCAATTTTACGGAGGTACCATAACC 58.885 40.000 15.94 10.62 40.06 2.85
5980 6741 5.697082 ATTTTACGGAGGTACCATAACCA 57.303 39.130 15.94 0.00 42.40 3.67
5987 6748 4.544683 GGAGGTACCATAACCAGACTACT 58.455 47.826 15.94 0.00 42.40 2.57
6093 6862 1.344953 AACCACACAGCCAGACAGGA 61.345 55.000 0.00 0.00 41.22 3.86
6172 6941 9.288124 CGTATCATGTAATTTGCAAATTTCTCA 57.712 29.630 35.18 29.01 39.24 3.27
6196 6965 8.816144 TCACAAAAAGAAAGTAATTTGCACATC 58.184 29.630 0.00 0.00 36.48 3.06
6322 7091 3.567585 GGAAAATAAGCAGAGAGGATGCC 59.432 47.826 0.00 0.00 44.97 4.40
6476 7245 7.233962 TGAAAGTAGTGTTCTATGAACCCAGTA 59.766 37.037 7.81 0.00 0.00 2.74
6861 7634 5.471797 ACATGATTGGAACACACGTTTATCA 59.528 36.000 0.00 0.00 39.29 2.15
6910 7683 8.337118 TGAATATAGGAGAAGGATCCAAAAGT 57.663 34.615 15.82 0.00 42.26 2.66
6984 7757 8.795513 TCTTATCAAAGATCTGAACAAAATGCA 58.204 29.630 0.00 0.00 36.80 3.96
7043 7816 1.194098 CAGTTCTGAAGCTGAAGTGCG 59.806 52.381 11.91 0.00 36.50 5.34
7054 7827 1.399440 CTGAAGTGCGGTGATCCAATG 59.601 52.381 0.00 0.00 0.00 2.82
7058 7832 2.726821 AGTGCGGTGATCCAATGATTT 58.273 42.857 0.00 0.00 0.00 2.17
7087 7861 0.657312 TGAACACAAGCAACAGCGAG 59.343 50.000 0.00 0.00 0.00 5.03
7150 7926 2.223456 GCAATATACATGGCGCACAACA 60.223 45.455 10.83 0.00 0.00 3.33
7251 8067 6.513806 AGCTTGTTAATATTGTCATGCACA 57.486 33.333 21.88 0.00 34.79 4.57
7277 8093 2.030371 TGCTGAATTGCTTGGTTGTCA 58.970 42.857 0.00 0.00 0.00 3.58
7349 8165 0.871722 GCCTTGTACAATCGTGCACA 59.128 50.000 18.64 4.45 37.48 4.57
7350 8166 1.265635 GCCTTGTACAATCGTGCACAA 59.734 47.619 18.64 0.00 38.44 3.33
7351 8167 2.287308 GCCTTGTACAATCGTGCACAAA 60.287 45.455 18.64 4.30 39.88 2.83
7382 8199 8.231692 TCCAAATCACAAGTTGACAAAAGATA 57.768 30.769 10.54 0.00 36.92 1.98
7384 8201 7.115378 CCAAATCACAAGTTGACAAAAGATAGC 59.885 37.037 10.54 0.00 36.92 2.97
7385 8202 6.882610 ATCACAAGTTGACAAAAGATAGCA 57.117 33.333 10.54 0.00 36.92 3.49
7386 8203 6.304356 TCACAAGTTGACAAAAGATAGCAG 57.696 37.500 10.54 0.00 0.00 4.24
7449 8267 1.352083 ATACATGCGGGCTATGACCT 58.648 50.000 0.00 0.00 0.00 3.85
7459 8277 2.688446 GGGCTATGACCTTTAGTTTGGC 59.312 50.000 0.00 0.00 0.00 4.52
7466 8284 5.429681 TGACCTTTAGTTTGGCAGCTATA 57.570 39.130 0.00 0.00 0.00 1.31
7467 8285 6.001449 TGACCTTTAGTTTGGCAGCTATAT 57.999 37.500 0.00 0.00 0.00 0.86
7468 8286 6.055588 TGACCTTTAGTTTGGCAGCTATATC 58.944 40.000 0.00 0.80 0.00 1.63
7469 8287 5.377478 ACCTTTAGTTTGGCAGCTATATCC 58.623 41.667 0.00 0.00 0.00 2.59
7470 8288 5.104109 ACCTTTAGTTTGGCAGCTATATCCA 60.104 40.000 0.00 0.00 0.00 3.41
7471 8289 6.006449 CCTTTAGTTTGGCAGCTATATCCAT 58.994 40.000 0.00 0.00 0.00 3.41
7472 8290 6.150140 CCTTTAGTTTGGCAGCTATATCCATC 59.850 42.308 0.00 0.00 0.00 3.51
7473 8291 4.712051 AGTTTGGCAGCTATATCCATCA 57.288 40.909 0.00 0.00 0.00 3.07
7474 8292 5.252586 AGTTTGGCAGCTATATCCATCAT 57.747 39.130 0.00 0.00 0.00 2.45
7475 8293 5.008331 AGTTTGGCAGCTATATCCATCATG 58.992 41.667 0.00 0.00 0.00 3.07
7476 8294 4.645863 TTGGCAGCTATATCCATCATGT 57.354 40.909 0.00 0.00 0.00 3.21
7515 8333 7.273320 ACATCAGGCAATCTCATGATTTAAG 57.727 36.000 0.00 0.00 40.61 1.85
7542 8360 8.561769 TGGAAAATATCTCCCTACAACCATAAA 58.438 33.333 2.19 0.00 31.32 1.40
7553 8371 6.129179 CCTACAACCATAAAACCCATGATCT 58.871 40.000 0.00 0.00 0.00 2.75
7629 8447 3.448660 AGATGTCATTGATGTGGTCTCGA 59.551 43.478 0.00 0.00 0.00 4.04
7711 8529 3.492337 AGATAAAGGCCACGTGGAAAAA 58.508 40.909 38.30 18.13 37.39 1.94
7748 8566 4.460263 AGTGCCGCTATTTCATGGAAATA 58.540 39.130 10.12 10.12 41.64 1.40
7759 8577 9.903682 CTATTTCATGGAAATATTGTAAGCAGG 57.096 33.333 10.78 0.00 41.63 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 9.720769 TCCGTCTTAAAATTCTTGTCTTAGATT 57.279 29.630 0.00 0.00 0.00 2.40
34 35 9.372369 CTCCGTCTTAAAATTCTTGTCTTAGAT 57.628 33.333 0.00 0.00 0.00 1.98
35 36 7.817962 CCTCCGTCTTAAAATTCTTGTCTTAGA 59.182 37.037 0.00 0.00 0.00 2.10
36 37 7.064728 CCCTCCGTCTTAAAATTCTTGTCTTAG 59.935 40.741 0.00 0.00 0.00 2.18
37 38 6.877322 CCCTCCGTCTTAAAATTCTTGTCTTA 59.123 38.462 0.00 0.00 0.00 2.10
38 39 5.705905 CCCTCCGTCTTAAAATTCTTGTCTT 59.294 40.000 0.00 0.00 0.00 3.01
39 40 5.012768 TCCCTCCGTCTTAAAATTCTTGTCT 59.987 40.000 0.00 0.00 0.00 3.41
40 41 5.243207 TCCCTCCGTCTTAAAATTCTTGTC 58.757 41.667 0.00 0.00 0.00 3.18
41 42 5.221864 ACTCCCTCCGTCTTAAAATTCTTGT 60.222 40.000 0.00 0.00 0.00 3.16
42 43 5.246307 ACTCCCTCCGTCTTAAAATTCTTG 58.754 41.667 0.00 0.00 0.00 3.02
43 44 5.500546 ACTCCCTCCGTCTTAAAATTCTT 57.499 39.130 0.00 0.00 0.00 2.52
44 45 5.720520 ACTACTCCCTCCGTCTTAAAATTCT 59.279 40.000 0.00 0.00 0.00 2.40
45 46 5.975282 ACTACTCCCTCCGTCTTAAAATTC 58.025 41.667 0.00 0.00 0.00 2.17
46 47 7.672122 ATACTACTCCCTCCGTCTTAAAATT 57.328 36.000 0.00 0.00 0.00 1.82
47 48 8.773033 TTATACTACTCCCTCCGTCTTAAAAT 57.227 34.615 0.00 0.00 0.00 1.82
48 49 8.773033 ATTATACTACTCCCTCCGTCTTAAAA 57.227 34.615 0.00 0.00 0.00 1.52
49 50 9.866655 TTATTATACTACTCCCTCCGTCTTAAA 57.133 33.333 0.00 0.00 0.00 1.52
50 51 9.866655 TTTATTATACTACTCCCTCCGTCTTAA 57.133 33.333 0.00 0.00 0.00 1.85
51 52 9.512588 CTTTATTATACTACTCCCTCCGTCTTA 57.487 37.037 0.00 0.00 0.00 2.10
52 53 7.039853 GCTTTATTATACTACTCCCTCCGTCTT 60.040 40.741 0.00 0.00 0.00 3.01
53 54 6.433716 GCTTTATTATACTACTCCCTCCGTCT 59.566 42.308 0.00 0.00 0.00 4.18
54 55 6.208204 TGCTTTATTATACTACTCCCTCCGTC 59.792 42.308 0.00 0.00 0.00 4.79
55 56 6.073314 TGCTTTATTATACTACTCCCTCCGT 58.927 40.000 0.00 0.00 0.00 4.69
56 57 6.585695 TGCTTTATTATACTACTCCCTCCG 57.414 41.667 0.00 0.00 0.00 4.63
57 58 6.867293 CGTTGCTTTATTATACTACTCCCTCC 59.133 42.308 0.00 0.00 0.00 4.30
58 59 7.432059 ACGTTGCTTTATTATACTACTCCCTC 58.568 38.462 0.00 0.00 0.00 4.30
59 60 7.357429 ACGTTGCTTTATTATACTACTCCCT 57.643 36.000 0.00 0.00 0.00 4.20
60 61 9.702494 AATACGTTGCTTTATTATACTACTCCC 57.298 33.333 0.00 0.00 0.00 4.30
82 83 2.035832 ACAGCACTTGGGTTGCAAATAC 59.964 45.455 0.00 0.00 0.00 1.89
167 168 3.633986 CCCTGAACTCATATTTTCCCTGC 59.366 47.826 0.00 0.00 0.00 4.85
170 171 7.423844 AATTTCCCTGAACTCATATTTTCCC 57.576 36.000 0.00 0.00 0.00 3.97
188 189 7.786178 AAAGAGGTTAACAAAGCAAATTTCC 57.214 32.000 8.10 0.00 0.00 3.13
360 387 3.319122 ACCAACAAAACTTCCAGAGCATC 59.681 43.478 0.00 0.00 0.00 3.91
384 411 8.316214 TGTATCAGAAGCAGATGCATCATTATA 58.684 33.333 27.81 11.27 45.16 0.98
415 442 1.182667 GTTCCACCCCAAGCATAACC 58.817 55.000 0.00 0.00 0.00 2.85
454 781 1.069636 CAAAAGCAGAGCCGTTCTCAC 60.070 52.381 4.99 0.00 44.35 3.51
467 794 1.242076 GAAGAGCAGGAGCAAAAGCA 58.758 50.000 0.00 0.00 45.49 3.91
476 803 0.034896 GTTGTTCGGGAAGAGCAGGA 59.965 55.000 0.00 0.00 41.10 3.86
524 851 2.353307 GGGGGCTAAAATTTCAACACCG 60.353 50.000 0.00 0.00 0.00 4.94
528 855 3.780902 CATCGGGGGCTAAAATTTCAAC 58.219 45.455 0.00 0.00 0.00 3.18
537 864 1.526887 CTCAAGCATCGGGGGCTAA 59.473 57.895 0.00 0.00 41.66 3.09
538 865 2.443394 CCTCAAGCATCGGGGGCTA 61.443 63.158 0.00 0.00 41.66 3.93
539 866 3.801997 CCTCAAGCATCGGGGGCT 61.802 66.667 0.00 0.00 45.15 5.19
540 867 2.837031 TTTCCTCAAGCATCGGGGGC 62.837 60.000 0.00 0.00 0.00 5.80
565 893 4.060900 TCATGCCGAGCTGATTATCTTTC 58.939 43.478 0.00 0.00 0.00 2.62
625 953 5.887598 TGAGCCAAATCTGTATACATTTGCT 59.112 36.000 19.75 19.02 38.26 3.91
627 955 8.407832 TCATTGAGCCAAATCTGTATACATTTG 58.592 33.333 18.79 18.79 38.98 2.32
691 1031 9.336171 GATCTAAACTTGGCTCTGATAATTTCT 57.664 33.333 0.00 0.00 0.00 2.52
713 1053 0.178861 ACCCACAGGTCCCAAGATCT 60.179 55.000 0.00 0.00 46.45 2.75
779 1119 9.167311 CTATACAAAGCTAAGTTTGAGAACCAT 57.833 33.333 2.92 0.00 39.40 3.55
781 1121 7.465173 GCTATACAAAGCTAAGTTTGAGAACC 58.535 38.462 2.92 0.00 39.40 3.62
809 1149 3.825908 TCCTTAAGGAACAGGCCAAAT 57.174 42.857 22.27 0.00 42.18 2.32
824 1164 2.650322 CAGGCCGCCTTTTATTCCTTA 58.350 47.619 9.99 0.00 0.00 2.69
876 1222 2.831742 CCGCGGCCCTGTAGTAGA 60.832 66.667 14.67 0.00 0.00 2.59
877 1223 4.587189 GCCGCGGCCCTGTAGTAG 62.587 72.222 39.89 1.92 34.56 2.57
910 1256 0.838122 ACTCTTGGTCCAGACTGGGG 60.838 60.000 21.56 7.21 38.32 4.96
943 1327 2.412421 GATTGATCGATTGCAAGGGC 57.588 50.000 4.94 0.00 41.68 5.19
955 1339 3.368948 GGAGGAGGATAAGGCGATTGATC 60.369 52.174 0.00 0.00 0.00 2.92
956 1340 2.569404 GGAGGAGGATAAGGCGATTGAT 59.431 50.000 0.00 0.00 0.00 2.57
957 1341 1.971357 GGAGGAGGATAAGGCGATTGA 59.029 52.381 0.00 0.00 0.00 2.57
980 1373 0.394488 TGACTGGTTGGTTTTGCGGA 60.394 50.000 0.00 0.00 0.00 5.54
1120 1525 3.530910 AAGAACAGGGTGCGACCGG 62.531 63.158 0.00 0.00 39.83 5.28
1128 1536 1.878656 CTCGGCGAGAAGAACAGGGT 61.879 60.000 32.07 0.00 0.00 4.34
1301 1716 2.046313 CACAAGAACGCTGAACATTGC 58.954 47.619 0.00 0.00 0.00 3.56
1321 1736 1.360931 GCCCCAACATTTGCATTCGC 61.361 55.000 0.00 0.00 39.24 4.70
1322 1737 0.247185 AGCCCCAACATTTGCATTCG 59.753 50.000 0.00 0.00 0.00 3.34
1323 1738 1.736696 CGAGCCCCAACATTTGCATTC 60.737 52.381 0.00 0.00 0.00 2.67
1325 1740 1.606885 CCGAGCCCCAACATTTGCAT 61.607 55.000 0.00 0.00 0.00 3.96
1327 1742 0.963355 TACCGAGCCCCAACATTTGC 60.963 55.000 0.00 0.00 0.00 3.68
1328 1743 1.540267 TTACCGAGCCCCAACATTTG 58.460 50.000 0.00 0.00 0.00 2.32
1329 1744 2.296073 TTTACCGAGCCCCAACATTT 57.704 45.000 0.00 0.00 0.00 2.32
1330 1745 2.525105 ATTTACCGAGCCCCAACATT 57.475 45.000 0.00 0.00 0.00 2.71
1331 1746 3.876309 ATATTTACCGAGCCCCAACAT 57.124 42.857 0.00 0.00 0.00 2.71
1332 1747 3.283751 CAATATTTACCGAGCCCCAACA 58.716 45.455 0.00 0.00 0.00 3.33
1333 1748 2.621526 CCAATATTTACCGAGCCCCAAC 59.378 50.000 0.00 0.00 0.00 3.77
1334 1749 2.242708 ACCAATATTTACCGAGCCCCAA 59.757 45.455 0.00 0.00 0.00 4.12
1335 1750 1.847737 ACCAATATTTACCGAGCCCCA 59.152 47.619 0.00 0.00 0.00 4.96
1336 1751 2.501261 GACCAATATTTACCGAGCCCC 58.499 52.381 0.00 0.00 0.00 5.80
1401 1820 3.835395 ACCTGGTAACTCTCCTCTTCTTG 59.165 47.826 0.00 0.00 37.61 3.02
1460 1879 2.787473 TTAGTGTGCCTGATTCCCTG 57.213 50.000 0.00 0.00 0.00 4.45
1465 1884 4.256920 CTGTAGCTTTAGTGTGCCTGATT 58.743 43.478 0.00 0.00 0.00 2.57
1477 1897 2.548057 GCAGTGTTGTGCTGTAGCTTTA 59.452 45.455 5.38 0.00 40.54 1.85
1568 1988 1.741770 GTTGCGGATGCTTCCTCGT 60.742 57.895 16.03 0.00 43.34 4.18
1569 1989 1.021390 AAGTTGCGGATGCTTCCTCG 61.021 55.000 16.03 5.61 43.34 4.63
1573 1993 1.396301 CAGAGAAGTTGCGGATGCTTC 59.604 52.381 11.81 11.81 43.34 3.86
1578 1998 1.537202 GTTTGCAGAGAAGTTGCGGAT 59.463 47.619 0.00 0.00 44.40 4.18
1586 2006 1.070577 CAACGGACGTTTGCAGAGAAG 60.071 52.381 7.44 0.00 36.00 2.85
1628 2048 0.445436 CTTCATGGTGCTTCTCACGC 59.555 55.000 0.00 0.00 46.56 5.34
1629 2049 1.081892 CCTTCATGGTGCTTCTCACG 58.918 55.000 0.00 0.00 46.56 4.35
1640 2060 1.406539 GCTTGGCATGTACCTTCATGG 59.593 52.381 8.41 0.00 43.54 3.66
1648 2068 0.383231 GCTGATGGCTTGGCATGTAC 59.617 55.000 14.34 1.37 38.06 2.90
1660 2080 2.816360 CGATGCGTGTGGCTGATGG 61.816 63.158 0.00 0.00 44.05 3.51
1661 2081 2.705220 CGATGCGTGTGGCTGATG 59.295 61.111 0.00 0.00 44.05 3.07
1684 2104 2.077687 ATCAGAATTGGGGATGCACC 57.922 50.000 0.00 0.00 38.08 5.01
1703 2123 6.680625 GCACATTTCTCCTTCGTATCTCACTA 60.681 42.308 0.00 0.00 0.00 2.74
1706 2126 4.081697 TGCACATTTCTCCTTCGTATCTCA 60.082 41.667 0.00 0.00 0.00 3.27
1733 2153 1.982073 GCGATCTTTTGCGGTCCCAG 61.982 60.000 0.00 0.00 0.00 4.45
1738 2158 1.024579 ATTCGGCGATCTTTTGCGGT 61.025 50.000 11.76 0.00 34.88 5.68
1751 2171 0.463654 TGATAGGTGGTGCATTCGGC 60.464 55.000 0.00 0.00 45.13 5.54
1757 2177 0.613260 GACAGGTGATAGGTGGTGCA 59.387 55.000 0.00 0.00 0.00 4.57
1759 2179 2.501316 TGATGACAGGTGATAGGTGGTG 59.499 50.000 0.00 0.00 0.00 4.17
1765 2185 4.677673 TGGTGATGATGACAGGTGATAG 57.322 45.455 0.00 0.00 0.00 2.08
1808 2228 2.885894 TGTTCATTGATGTGCAGCTGAA 59.114 40.909 20.43 2.96 31.54 3.02
1811 2231 3.319972 AGTTTGTTCATTGATGTGCAGCT 59.680 39.130 0.00 0.00 0.00 4.24
1847 2267 1.982395 TCGGCCCTTCGACATGTCT 60.982 57.895 22.95 0.00 33.92 3.41
1884 2304 1.333931 TGGTGAGCGATGTCGAGATAC 59.666 52.381 6.60 0.00 43.02 2.24
1896 2316 3.626680 ACGATGACGGTGGTGAGCG 62.627 63.158 0.00 0.00 44.69 5.03
1913 2333 1.376683 TCATGGCGGGTGTAGCAAC 60.377 57.895 0.00 0.00 36.08 4.17
1918 2338 2.574929 GTCGTCATGGCGGGTGTA 59.425 61.111 21.18 0.00 0.00 2.90
1921 2341 3.385749 GATGGTCGTCATGGCGGGT 62.386 63.158 21.18 3.22 35.97 5.28
1928 2348 1.414181 GAGGATGGTGATGGTCGTCAT 59.586 52.381 0.00 0.00 39.13 3.06
1964 2384 2.487762 GCAATTGTCATCGTTTGGAGGA 59.512 45.455 7.40 0.00 32.02 3.71
1977 2397 2.604614 GGGTGTCGTTCTTGCAATTGTC 60.605 50.000 7.40 0.07 0.00 3.18
2033 2454 2.573462 CTCAGATTTCCCTGGAGTGGAA 59.427 50.000 0.00 0.00 40.08 3.53
2035 2456 1.211457 CCTCAGATTTCCCTGGAGTGG 59.789 57.143 0.00 0.00 34.99 4.00
2037 2458 2.350863 ACCTCAGATTTCCCTGGAGT 57.649 50.000 0.00 0.00 34.99 3.85
2038 2459 3.615155 GAAACCTCAGATTTCCCTGGAG 58.385 50.000 0.00 0.00 34.99 3.86
2039 2460 2.308866 GGAAACCTCAGATTTCCCTGGA 59.691 50.000 0.00 0.00 46.42 3.86
2040 2461 2.728007 GGAAACCTCAGATTTCCCTGG 58.272 52.381 0.00 0.00 46.42 4.45
2110 2532 4.072131 AGCGCCACTTTTTCTTGAAGATA 58.928 39.130 2.29 0.00 0.00 1.98
2156 2578 0.482887 CCTTCCTCCCAAACAACCCT 59.517 55.000 0.00 0.00 0.00 4.34
2164 2586 1.133915 GTTGTGTGTCCTTCCTCCCAA 60.134 52.381 0.00 0.00 0.00 4.12
2210 2632 0.473755 TCAAAGCCAGGCTCTTCACA 59.526 50.000 16.53 0.00 38.25 3.58
2282 2705 0.179032 CAGTTGTACCAGTGTGGCCA 60.179 55.000 0.00 0.00 42.67 5.36
2326 2749 1.142870 AGTTGCTTGTGGAGGCTGTAA 59.857 47.619 0.00 0.00 0.00 2.41
2371 2795 0.109342 AGTGCTTAGCCTGTGCAAGT 59.891 50.000 0.29 0.00 41.13 3.16
2439 2863 2.046285 CCACCTTCAATGGTCGGCC 61.046 63.158 0.00 0.00 38.45 6.13
2459 2883 2.986492 GGTGCTACCTGGTGACCTA 58.014 57.895 10.23 0.00 34.73 3.08
2477 2901 2.108970 GTGTGTCCCCTCTTACCCTAG 58.891 57.143 0.00 0.00 0.00 3.02
2483 2907 2.642171 AGATGGTGTGTCCCCTCTTA 57.358 50.000 0.00 0.00 34.77 2.10
2485 2909 1.280457 GAAGATGGTGTGTCCCCTCT 58.720 55.000 0.00 0.00 34.77 3.69
2532 2957 1.550130 TTTCGATCCAAGGCGAGGGT 61.550 55.000 0.00 0.00 37.85 4.34
2558 2983 2.266689 CCCGAATCCCGACGGTTT 59.733 61.111 13.94 6.06 46.53 3.27
2559 2984 4.462280 GCCCGAATCCCGACGGTT 62.462 66.667 13.94 0.50 46.53 4.44
2588 3013 2.046023 CCTTGCGATGTGAGGGCA 60.046 61.111 0.00 0.00 34.35 5.36
2613 3038 0.319900 CGAATCTAGGTGGATGCCCG 60.320 60.000 0.00 0.00 34.29 6.13
2619 3044 2.433239 GTTTAGCCCGAATCTAGGTGGA 59.567 50.000 0.00 0.00 0.00 4.02
2806 3232 0.460311 CCTTCCTAGCGGTAGTGGTG 59.540 60.000 19.56 5.22 0.00 4.17
2807 3233 0.333993 TCCTTCCTAGCGGTAGTGGT 59.666 55.000 19.56 0.00 0.00 4.16
2826 3252 2.090719 TGACGAAAGGGGATAGGGATCT 60.091 50.000 0.00 0.00 32.15 2.75
2914 3340 3.904800 TTGAAGGCATCGTCAAGGATA 57.095 42.857 0.00 0.00 36.68 2.59
2947 3373 1.470285 GCAATGGCGACGTACTTAGGA 60.470 52.381 0.00 0.00 0.00 2.94
2960 3386 1.453928 GGTCAGGGTAGGCAATGGC 60.454 63.158 0.00 0.00 40.13 4.40
3027 3453 2.828520 CAGCTAGTCTTGAGGTTCAGGA 59.171 50.000 0.00 0.00 29.52 3.86
3030 3456 2.563179 GTCCAGCTAGTCTTGAGGTTCA 59.437 50.000 0.00 0.00 0.00 3.18
3038 3464 4.161102 AGTTTAGTGGTCCAGCTAGTCTT 58.839 43.478 0.00 0.00 0.00 3.01
3069 3495 0.721718 CAGCTAGCTGCAAACGGTAC 59.278 55.000 30.62 0.00 45.94 3.34
3070 3496 0.606096 TCAGCTAGCTGCAAACGGTA 59.394 50.000 35.21 16.14 45.94 4.02
3085 3511 2.383368 CCTGAGCTAGGCATATCAGC 57.617 55.000 3.93 0.00 40.38 4.26
3114 3540 0.962356 GATTATGCGGGCCCCATCAG 60.962 60.000 24.16 8.99 0.00 2.90
3115 3541 1.074775 GATTATGCGGGCCCCATCA 59.925 57.895 24.16 16.77 0.00 3.07
3116 3542 0.618458 TAGATTATGCGGGCCCCATC 59.382 55.000 24.16 14.47 0.00 3.51
3144 3570 4.050757 AGCCTGGATCTAGGAAATCCTTT 58.949 43.478 28.07 0.48 46.09 3.11
3151 3577 2.242926 CGATGAGCCTGGATCTAGGAA 58.757 52.381 28.07 12.94 40.42 3.36
3175 3601 1.595882 GAGGAAGCAGAGCAGCAGA 59.404 57.895 0.00 0.00 36.85 4.26
3183 3609 1.315981 ATGAGCGTCGAGGAAGCAGA 61.316 55.000 9.75 0.00 39.36 4.26
3236 3662 0.032615 AAAACTCCCTTGTGGTGGCA 60.033 50.000 0.00 0.00 34.77 4.92
3318 3744 3.790437 AGGCCTGGAGTGGATGCG 61.790 66.667 3.11 0.00 0.00 4.73
3340 3766 0.179045 ACATCGGCATGGTTCTAGCC 60.179 55.000 0.00 0.00 44.89 3.93
3451 3878 2.613506 GCCCAAACCCACGTTCTCG 61.614 63.158 0.00 0.00 43.34 4.04
3453 3880 1.228154 GAGCCCAAACCCACGTTCT 60.228 57.895 0.00 0.00 0.00 3.01
3454 3881 2.265904 GGAGCCCAAACCCACGTTC 61.266 63.158 0.00 0.00 0.00 3.95
3456 3883 4.280019 GGGAGCCCAAACCCACGT 62.280 66.667 0.00 0.00 44.96 4.49
3462 3889 0.678048 CAGCACTAGGGAGCCCAAAC 60.678 60.000 8.53 0.00 38.92 2.93
3465 3892 3.402681 GCAGCACTAGGGAGCCCA 61.403 66.667 8.53 0.00 38.92 5.36
3474 3901 4.082845 AGACTACTCTTCAAGCAGCACTA 58.917 43.478 0.00 0.00 0.00 2.74
3475 3902 2.896685 AGACTACTCTTCAAGCAGCACT 59.103 45.455 0.00 0.00 0.00 4.40
3479 3906 5.537188 AGTGAAAGACTACTCTTCAAGCAG 58.463 41.667 0.00 0.00 35.52 4.24
3484 3911 7.201145 GTGTACAAGTGAAAGACTACTCTTCA 58.799 38.462 0.00 0.00 35.52 3.02
3486 3913 6.207213 CGTGTACAAGTGAAAGACTACTCTT 58.793 40.000 0.00 0.00 38.49 2.85
3543 3991 1.605232 TGATCATTGCATCATCCGTGC 59.395 47.619 0.00 0.00 42.81 5.34
3599 4047 5.648092 AGAGTACAAACATATTCCCAACAGC 59.352 40.000 0.00 0.00 0.00 4.40
3641 4089 2.282180 AGCGGCACCACGGAAAAT 60.282 55.556 1.45 0.00 0.00 1.82
3754 4202 8.703604 TTAATCTGGACTCTAATTCGAAACTG 57.296 34.615 0.00 0.00 0.00 3.16
3764 4212 9.042450 TGATTGGTAGTTTAATCTGGACTCTAA 57.958 33.333 0.00 0.00 35.02 2.10
3821 4437 3.181455 TGCTCACAGGTGTGTCTACAAAT 60.181 43.478 9.87 0.00 45.76 2.32
3829 4445 2.224597 TGATGATTGCTCACAGGTGTGT 60.225 45.455 9.87 0.00 45.76 3.72
3861 4477 5.740569 CGACAAGCATGATTAGTGGAATTTG 59.259 40.000 0.00 0.00 0.00 2.32
3893 4509 5.470047 AGATCATGGATTAGGTTACGGAC 57.530 43.478 0.00 0.00 0.00 4.79
4026 4642 7.039882 GCATGGGATTATCATTTGATGGAATC 58.960 38.462 3.30 5.64 45.83 2.52
4138 4867 5.824904 ATACCACAAGACTTGCATGAATC 57.175 39.130 15.24 0.00 0.00 2.52
4143 4872 4.456911 CAGTCAATACCACAAGACTTGCAT 59.543 41.667 15.24 3.62 39.17 3.96
4157 4886 6.037610 CAGAGAATAAACCTGGCAGTCAATAC 59.962 42.308 14.43 0.00 0.00 1.89
4260 4990 1.456518 CTCATCCTCCTCGCCCTCA 60.457 63.158 0.00 0.00 0.00 3.86
4302 5033 6.411376 ACAAGACGGTGATACATTTATGGAA 58.589 36.000 0.00 0.00 0.00 3.53
4316 5048 6.241207 AGAAATAATGACAACAAGACGGTG 57.759 37.500 0.00 0.00 0.00 4.94
4356 5088 7.637631 TCCTCGATATCTATTCTCATTCCAG 57.362 40.000 0.34 0.00 0.00 3.86
4360 5092 6.194235 AGGCTCCTCGATATCTATTCTCATT 58.806 40.000 0.34 0.00 0.00 2.57
4682 5427 9.376075 TCACAAAAAGAATTTGCAGAAATAACA 57.624 25.926 1.08 0.00 39.02 2.41
4686 5431 8.949177 AGTTTCACAAAAAGAATTTGCAGAAAT 58.051 25.926 17.33 9.50 39.02 2.17
4737 5482 4.487714 TGAACACCAGTTGAGTCTTTCT 57.512 40.909 0.00 0.00 38.30 2.52
4881 5628 9.889128 AAATGAAAGTTCAGGAATTGAGAAAAA 57.111 25.926 0.00 0.00 41.08 1.94
4960 5707 5.992829 TCGTTTGTCCTTCACTAATGCTTTA 59.007 36.000 0.00 0.00 29.57 1.85
5081 5828 8.383619 CAAGTCACCGTATTTATCAGAGAAAAG 58.616 37.037 0.00 0.00 0.00 2.27
5249 5996 7.945033 TGCCAGAAAAGTTTCATAAATGAAC 57.055 32.000 4.89 2.03 45.63 3.18
5334 6082 4.890088 ACTAACATCAAACGGTGAGCTTA 58.110 39.130 0.00 0.00 40.43 3.09
5404 6159 5.651139 CAGGAATCTCCAAACACAAGATCAT 59.349 40.000 0.00 0.00 39.61 2.45
5407 6162 4.763793 CACAGGAATCTCCAAACACAAGAT 59.236 41.667 0.00 0.00 39.61 2.40
5467 6222 7.606456 ACCACCAGATACACTGTATAAACTTTG 59.394 37.037 1.45 0.00 44.40 2.77
5475 6230 7.015292 CCATAAGTACCACCAGATACACTGTAT 59.985 40.741 1.01 1.01 44.40 2.29
5544 6301 9.268268 TCTTGAAACAGTTCTGACGTAATTATT 57.732 29.630 6.83 0.00 34.60 1.40
5548 6305 6.281405 AGTCTTGAAACAGTTCTGACGTAAT 58.719 36.000 6.83 0.00 40.04 1.89
5596 6357 4.100529 CAATCAAAGCTTTGTATGCCGAG 58.899 43.478 32.46 14.79 39.18 4.63
5611 6372 3.565307 ACAGAAGGTCAAGGCAATCAAA 58.435 40.909 0.00 0.00 0.00 2.69
5631 6392 4.319694 GCCATCCTGTTGAAATTTTGCAAC 60.320 41.667 13.25 13.25 43.45 4.17
5639 6400 5.541484 AGAAAAGAAGCCATCCTGTTGAAAT 59.459 36.000 0.00 0.00 0.00 2.17
5934 6695 2.663196 CCTTCTCACCACCCGGAC 59.337 66.667 0.73 0.00 35.59 4.79
5958 6719 5.426185 TCTGGTTATGGTACCTCCGTAAAAT 59.574 40.000 14.36 0.00 45.73 1.82
5965 6726 4.544683 AGTAGTCTGGTTATGGTACCTCC 58.455 47.826 14.36 10.69 39.04 4.30
5975 6736 5.779922 CTTTGTGTGCTAGTAGTCTGGTTA 58.220 41.667 0.00 0.00 0.00 2.85
5976 6737 4.632153 CTTTGTGTGCTAGTAGTCTGGTT 58.368 43.478 0.00 0.00 0.00 3.67
5977 6738 3.555168 GCTTTGTGTGCTAGTAGTCTGGT 60.555 47.826 0.00 0.00 0.00 4.00
5978 6739 2.996621 GCTTTGTGTGCTAGTAGTCTGG 59.003 50.000 0.00 0.00 0.00 3.86
5979 6740 3.919216 AGCTTTGTGTGCTAGTAGTCTG 58.081 45.455 0.00 0.00 39.21 3.51
5980 6741 4.082136 GGTAGCTTTGTGTGCTAGTAGTCT 60.082 45.833 0.00 0.00 42.74 3.24
5987 6748 5.422331 AGAGATAAGGTAGCTTTGTGTGCTA 59.578 40.000 13.21 0.00 41.46 3.49
6071 6840 1.873591 CTGTCTGGCTGTGTGGTTTAC 59.126 52.381 0.00 0.00 0.00 2.01
6093 6862 0.108585 AAAGACCATGGCGTCAGTGT 59.891 50.000 13.04 0.00 35.07 3.55
6143 6912 8.978564 AAATTTGCAAATTACATGATACGTCA 57.021 26.923 31.87 0.00 37.62 4.35
6172 6941 8.603181 GTGATGTGCAAATTACTTTCTTTTTGT 58.397 29.630 4.55 0.00 32.88 2.83
6322 7091 1.135689 GCCTCCACACAAATTGTAGCG 60.136 52.381 0.00 0.00 35.67 4.26
6476 7245 5.478679 CCATTCGTAGAATCCTAGATCAGGT 59.521 44.000 9.98 0.00 45.90 4.00
6910 7683 6.374053 TGATGCGGAAATGTTGAATCTCTTTA 59.626 34.615 0.00 0.00 0.00 1.85
6966 7739 5.988310 TCCATGCATTTTGTTCAGATCTT 57.012 34.783 0.00 0.00 0.00 2.40
7043 7816 5.652014 TGAACCTGTAAATCATTGGATCACC 59.348 40.000 0.00 0.00 31.88 4.02
7054 7827 5.858581 GCTTGTGTTCATGAACCTGTAAATC 59.141 40.000 30.66 12.71 40.46 2.17
7058 7832 3.814625 TGCTTGTGTTCATGAACCTGTA 58.185 40.909 30.66 13.34 40.46 2.74
7116 7891 9.559958 GCCATGTATATTGCAAATGTAGATTAC 57.440 33.333 1.71 0.00 0.00 1.89
7139 7914 1.332375 GAGTTTAACTGTTGTGCGCCA 59.668 47.619 4.18 0.00 0.00 5.69
7150 7926 6.458210 CCATGGCAAAAGAATGAGTTTAACT 58.542 36.000 0.00 0.00 0.00 2.24
7251 8067 4.612264 ACCAAGCAATTCAGCAGAAATT 57.388 36.364 0.00 0.00 37.29 1.82
7277 8093 7.259088 ACAAGAGTTACCCAGTCAATTAGAT 57.741 36.000 0.00 0.00 0.00 1.98
7349 8165 7.068103 TGTCAACTTGTGATTTGGATACAGTTT 59.932 33.333 0.00 0.00 43.91 2.66
7350 8166 6.545666 TGTCAACTTGTGATTTGGATACAGTT 59.454 34.615 0.00 0.00 43.91 3.16
7351 8167 6.061441 TGTCAACTTGTGATTTGGATACAGT 58.939 36.000 0.00 0.00 43.91 3.55
7382 8199 2.028112 TCACGCTGATAGGAAAACTGCT 60.028 45.455 0.00 0.00 0.00 4.24
7384 8201 3.935203 ACATCACGCTGATAGGAAAACTG 59.065 43.478 1.07 0.00 34.28 3.16
7385 8202 4.207891 ACATCACGCTGATAGGAAAACT 57.792 40.909 1.07 0.00 34.28 2.66
7386 8203 4.391830 TCAACATCACGCTGATAGGAAAAC 59.608 41.667 1.07 0.00 34.28 2.43
7449 8267 6.600388 TGATGGATATAGCTGCCAAACTAAA 58.400 36.000 0.00 0.00 34.95 1.85
7459 8277 4.633126 CCCGAAACATGATGGATATAGCTG 59.367 45.833 0.00 0.00 0.00 4.24
7466 8284 2.224867 GGATCCCCGAAACATGATGGAT 60.225 50.000 0.00 0.00 35.38 3.41
7467 8285 1.142870 GGATCCCCGAAACATGATGGA 59.857 52.381 0.00 0.00 0.00 3.41
7468 8286 1.609208 GGATCCCCGAAACATGATGG 58.391 55.000 0.00 0.00 0.00 3.51
7489 8307 6.879276 AAATCATGAGATTGCCTGATGTAG 57.121 37.500 0.09 0.00 43.52 2.74
7495 8313 5.591472 TCCACTTAAATCATGAGATTGCCTG 59.409 40.000 0.09 0.00 43.52 4.85
7515 8333 5.751586 TGGTTGTAGGGAGATATTTTCCAC 58.248 41.667 8.85 0.00 36.40 4.02
7542 8360 6.240586 GGGGATATAAGGAAAGATCATGGGTT 60.241 42.308 0.00 0.00 0.00 4.11
7553 8371 4.158015 GGACTCGAGGGGATATAAGGAAA 58.842 47.826 18.41 0.00 0.00 3.13
7730 8548 7.538678 GCTTACAATATTTCCATGAAATAGCGG 59.461 37.037 13.04 8.45 44.30 5.52
7748 8566 4.622260 AAACAAATGGCCTGCTTACAAT 57.378 36.364 3.32 0.00 0.00 2.71
7759 8577 3.509967 ACTTACCTGCCTAAACAAATGGC 59.490 43.478 0.00 0.00 46.26 4.40
7773 8592 7.042335 CCTCACTAAGATGGTTTACTTACCTG 58.958 42.308 0.00 0.00 39.04 4.00
7877 8696 2.641197 GTTTCTCAACCACCGGCAT 58.359 52.632 0.00 0.00 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.