Multiple sequence alignment - TraesCS6B01G059900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G059900 chr6B 100.000 2456 0 0 1 2456 39454825 39457280 0.000000e+00 4536.0
1 TraesCS6B01G059900 chr6B 87.548 779 68 14 828 1604 39757009 39757760 0.000000e+00 874.0
2 TraesCS6B01G059900 chr6B 88.947 190 18 3 1642 1828 39757761 39757950 5.280000e-57 231.0
3 TraesCS6B01G059900 chr6D 90.396 1312 85 14 828 2111 24339279 24337981 0.000000e+00 1687.0
4 TraesCS6B01G059900 chr6D 90.396 1312 85 14 828 2111 24431329 24432627 0.000000e+00 1687.0
5 TraesCS6B01G059900 chr6D 91.513 1084 59 10 828 1884 24363108 24362031 0.000000e+00 1461.0
6 TraesCS6B01G059900 chr6D 87.241 1301 100 29 830 2104 24352126 24350866 0.000000e+00 1423.0
7 TraesCS6B01G059900 chr6D 87.163 1075 90 28 828 1884 24355880 24354836 0.000000e+00 1177.0
8 TraesCS6B01G059900 chr6D 86.300 1073 99 19 830 1884 24404420 24405462 0.000000e+00 1123.0
9 TraesCS6B01G059900 chr6D 89.286 168 16 2 1945 2111 24296089 24295923 2.470000e-50 209.0
10 TraesCS6B01G059900 chr6D 89.172 157 13 4 1732 1884 24323386 24323230 2.490000e-45 193.0
11 TraesCS6B01G059900 chr6D 94.737 57 3 0 1944 2000 24362007 24361951 3.360000e-14 89.8
12 TraesCS6B01G059900 chr6A 89.433 1306 105 14 828 2111 23441796 23440502 0.000000e+00 1616.0
13 TraesCS6B01G059900 chr6A 90.404 990 56 11 828 1804 23025339 23026302 0.000000e+00 1266.0
14 TraesCS6B01G059900 chr6A 88.462 1066 88 14 828 1880 22988445 22989488 0.000000e+00 1254.0
15 TraesCS6B01G059900 chr6A 87.802 910 82 11 830 1725 22818317 22819211 0.000000e+00 1038.0
16 TraesCS6B01G059900 chr6A 91.892 111 8 1 1944 2053 22989516 22989626 1.180000e-33 154.0
17 TraesCS6B01G059900 chr6A 76.552 290 36 15 1848 2136 22824002 22824260 1.980000e-26 130.0
18 TraesCS6B01G059900 chr5D 96.014 828 33 0 1 828 232260396 232261223 0.000000e+00 1347.0
19 TraesCS6B01G059900 chr2B 95.899 829 34 0 1 829 390270674 390271502 0.000000e+00 1343.0
20 TraesCS6B01G059900 chr2B 95.427 831 35 2 1 829 704324630 704323801 0.000000e+00 1321.0
21 TraesCS6B01G059900 chr2B 95.416 829 37 1 1 828 679102099 679102927 0.000000e+00 1319.0
22 TraesCS6B01G059900 chr2D 95.894 828 34 0 1 828 43064934 43065761 0.000000e+00 1341.0
23 TraesCS6B01G059900 chr1B 95.778 829 35 0 1 829 27138884 27138056 0.000000e+00 1338.0
24 TraesCS6B01G059900 chr1B 95.531 828 33 3 1 828 458235095 458234272 0.000000e+00 1321.0
25 TraesCS6B01G059900 chr3B 95.531 828 35 2 1 828 126327454 126326629 0.000000e+00 1323.0
26 TraesCS6B01G059900 chr7B 95.411 828 36 2 1 828 588668668 588667843 0.000000e+00 1317.0
27 TraesCS6B01G059900 chrUn 90.404 990 56 11 828 1804 284475545 284474582 0.000000e+00 1266.0
28 TraesCS6B01G059900 chrUn 84.646 1003 110 22 828 1804 278294601 278295585 0.000000e+00 959.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G059900 chr6B 39454825 39457280 2455 False 4536.0 4536 100.0000 1 2456 1 chr6B.!!$F1 2455
1 TraesCS6B01G059900 chr6B 39757009 39757950 941 False 552.5 874 88.2475 828 1828 2 chr6B.!!$F2 1000
2 TraesCS6B01G059900 chr6D 24337981 24339279 1298 True 1687.0 1687 90.3960 828 2111 1 chr6D.!!$R3 1283
3 TraesCS6B01G059900 chr6D 24431329 24432627 1298 False 1687.0 1687 90.3960 828 2111 1 chr6D.!!$F2 1283
4 TraesCS6B01G059900 chr6D 24350866 24355880 5014 True 1300.0 1423 87.2020 828 2104 2 chr6D.!!$R4 1276
5 TraesCS6B01G059900 chr6D 24404420 24405462 1042 False 1123.0 1123 86.3000 830 1884 1 chr6D.!!$F1 1054
6 TraesCS6B01G059900 chr6D 24361951 24363108 1157 True 775.4 1461 93.1250 828 2000 2 chr6D.!!$R5 1172
7 TraesCS6B01G059900 chr6A 23440502 23441796 1294 True 1616.0 1616 89.4330 828 2111 1 chr6A.!!$R1 1283
8 TraesCS6B01G059900 chr6A 23025339 23026302 963 False 1266.0 1266 90.4040 828 1804 1 chr6A.!!$F3 976
9 TraesCS6B01G059900 chr6A 22818317 22819211 894 False 1038.0 1038 87.8020 830 1725 1 chr6A.!!$F1 895
10 TraesCS6B01G059900 chr6A 22988445 22989626 1181 False 704.0 1254 90.1770 828 2053 2 chr6A.!!$F4 1225
11 TraesCS6B01G059900 chr5D 232260396 232261223 827 False 1347.0 1347 96.0140 1 828 1 chr5D.!!$F1 827
12 TraesCS6B01G059900 chr2B 390270674 390271502 828 False 1343.0 1343 95.8990 1 829 1 chr2B.!!$F1 828
13 TraesCS6B01G059900 chr2B 704323801 704324630 829 True 1321.0 1321 95.4270 1 829 1 chr2B.!!$R1 828
14 TraesCS6B01G059900 chr2B 679102099 679102927 828 False 1319.0 1319 95.4160 1 828 1 chr2B.!!$F2 827
15 TraesCS6B01G059900 chr2D 43064934 43065761 827 False 1341.0 1341 95.8940 1 828 1 chr2D.!!$F1 827
16 TraesCS6B01G059900 chr1B 27138056 27138884 828 True 1338.0 1338 95.7780 1 829 1 chr1B.!!$R1 828
17 TraesCS6B01G059900 chr1B 458234272 458235095 823 True 1321.0 1321 95.5310 1 828 1 chr1B.!!$R2 827
18 TraesCS6B01G059900 chr3B 126326629 126327454 825 True 1323.0 1323 95.5310 1 828 1 chr3B.!!$R1 827
19 TraesCS6B01G059900 chr7B 588667843 588668668 825 True 1317.0 1317 95.4110 1 828 1 chr7B.!!$R1 827
20 TraesCS6B01G059900 chrUn 284474582 284475545 963 True 1266.0 1266 90.4040 828 1804 1 chrUn.!!$R1 976
21 TraesCS6B01G059900 chrUn 278294601 278295585 984 False 959.0 959 84.6460 828 1804 1 chrUn.!!$F1 976

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
233 234 0.602905 CGGTTTCCGGTTTCTGAGCT 60.603 55.0 0.0 0.0 44.15 4.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1941 5750 0.037419 CCATTTGAGTTTTGCCCGGG 60.037 55.0 19.09 19.09 0.0 5.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
81 82 2.550830 TGCCAAGTCTGTCTCTTTCC 57.449 50.000 0.00 0.00 0.00 3.13
182 183 6.039493 GTGCTATGCCAGGAGTATATATACGT 59.961 42.308 15.57 0.00 38.28 3.57
233 234 0.602905 CGGTTTCCGGTTTCTGAGCT 60.603 55.000 0.00 0.00 44.15 4.09
241 242 2.076100 CGGTTTCTGAGCTACATGCAA 58.924 47.619 0.00 0.00 45.94 4.08
260 261 7.663905 ACATGCAATAGTTAGTTTAGGTTCACA 59.336 33.333 0.00 0.00 0.00 3.58
297 298 4.993584 GGGATATGAACTCATGTACTGCAG 59.006 45.833 13.48 13.48 37.15 4.41
467 470 9.269453 GATGATGACATGATTTGATGAGACTAA 57.731 33.333 0.00 0.00 36.82 2.24
620 625 4.740235 GCAGTAGCGCCTCCTTAG 57.260 61.111 2.29 0.00 0.00 2.18
705 710 4.793731 CGCTACAACTATCCATGTATAGCG 59.206 45.833 5.28 7.79 43.69 4.26
744 749 2.603892 GCGCTACTGCTATACGTTAGCA 60.604 50.000 22.40 22.40 47.00 3.49
907 912 7.671819 CCTGTAATAGTCTTATGGGAGAGATCA 59.328 40.741 0.00 0.00 0.00 2.92
1102 1107 0.251653 TCGCCTGAACCTGTCCTACT 60.252 55.000 0.00 0.00 0.00 2.57
1107 1112 3.616802 GCCTGAACCTGTCCTACTACAAC 60.617 52.174 0.00 0.00 0.00 3.32
1109 1114 2.901839 TGAACCTGTCCTACTACAACCC 59.098 50.000 0.00 0.00 0.00 4.11
1228 4985 1.686355 AAATTGTTCGTCACAGCCCA 58.314 45.000 0.00 0.00 36.48 5.36
1266 5035 1.741401 CCACGGAGATGCAAGCGAA 60.741 57.895 0.00 0.00 0.00 4.70
1386 5155 1.166129 GGTACTCGCTCTGTGACAGA 58.834 55.000 15.36 15.36 38.25 3.41
1401 5170 3.935203 GTGACAGACTGTATGATTGGGTG 59.065 47.826 8.41 0.00 0.00 4.61
1741 5530 4.857588 GTGTATCGTACTGGAACAAGTCAG 59.142 45.833 0.00 0.00 38.70 3.51
1742 5531 4.763279 TGTATCGTACTGGAACAAGTCAGA 59.237 41.667 0.00 0.00 38.70 3.27
1764 5558 6.650807 CAGACACATGTTTGTATTCTAGGTGT 59.349 38.462 0.00 0.00 39.41 4.16
1831 5638 6.918022 GCATGCCATTAACTGAGGTTTTATAC 59.082 38.462 6.36 0.00 36.92 1.47
1861 5668 6.094742 TGTGTTTTCTATGTGCTTTCTGTTGA 59.905 34.615 0.00 0.00 0.00 3.18
1871 5679 3.888323 TGCTTTCTGTTGATGGTGCTTTA 59.112 39.130 0.00 0.00 0.00 1.85
1895 5704 9.807649 TTATTTTTATAGTAACTGACGGTCCTC 57.192 33.333 5.55 0.00 0.00 3.71
1899 5708 3.157750 AGTAACTGACGGTCCTCTTCT 57.842 47.619 5.55 0.00 0.00 2.85
1914 5723 4.783227 TCCTCTTCTATGTGCTTTTACCCT 59.217 41.667 0.00 0.00 0.00 4.34
1936 5745 9.220906 ACCCTATGGTAAATACTGATTTAGTCA 57.779 33.333 0.00 0.00 45.45 3.41
1942 5751 8.682710 TGGTAAATACTGATTTAGTCATTTGCC 58.317 33.333 15.18 15.18 40.44 4.52
1986 5795 4.553678 AGATAAGGAGGATGAAACCGGTA 58.446 43.478 8.00 0.00 34.73 4.02
2015 5824 2.490903 GGATGATGATAACATGGCAGGC 59.509 50.000 0.00 0.00 36.82 4.85
2043 5852 5.056894 AGCTGATTCTGATTTTGTTCTGC 57.943 39.130 0.00 0.00 0.00 4.26
2057 5866 2.158475 TGTTCTGCCCTGGAAGATGTTT 60.158 45.455 0.00 0.00 34.07 2.83
2089 5898 5.753721 AGAGCAATAGTTGAGAAGAACCT 57.246 39.130 0.00 0.00 0.00 3.50
2092 5901 5.983540 AGCAATAGTTGAGAAGAACCTAGG 58.016 41.667 7.41 7.41 0.00 3.02
2095 5904 3.971245 AGTTGAGAAGAACCTAGGCAG 57.029 47.619 9.30 0.00 0.00 4.85
2098 5907 4.838986 AGTTGAGAAGAACCTAGGCAGTAA 59.161 41.667 9.30 0.00 0.00 2.24
2111 5920 6.268847 ACCTAGGCAGTAATATGGAGAGAAAG 59.731 42.308 9.30 0.00 0.00 2.62
2112 5921 6.268847 CCTAGGCAGTAATATGGAGAGAAAGT 59.731 42.308 0.00 0.00 0.00 2.66
2113 5922 6.567602 AGGCAGTAATATGGAGAGAAAGTT 57.432 37.500 0.00 0.00 0.00 2.66
2114 5923 7.676683 AGGCAGTAATATGGAGAGAAAGTTA 57.323 36.000 0.00 0.00 0.00 2.24
2115 5924 8.090788 AGGCAGTAATATGGAGAGAAAGTTAA 57.909 34.615 0.00 0.00 0.00 2.01
2116 5925 8.548877 AGGCAGTAATATGGAGAGAAAGTTAAA 58.451 33.333 0.00 0.00 0.00 1.52
2117 5926 9.174166 GGCAGTAATATGGAGAGAAAGTTAAAA 57.826 33.333 0.00 0.00 0.00 1.52
2126 5935 8.533569 TGGAGAGAAAGTTAAAATCCTTTTGT 57.466 30.769 0.00 0.00 34.19 2.83
2127 5936 8.413229 TGGAGAGAAAGTTAAAATCCTTTTGTG 58.587 33.333 0.00 0.00 34.19 3.33
2128 5937 7.867909 GGAGAGAAAGTTAAAATCCTTTTGTGG 59.132 37.037 0.00 0.00 34.19 4.17
2129 5938 8.306313 AGAGAAAGTTAAAATCCTTTTGTGGT 57.694 30.769 0.00 0.00 34.19 4.16
2130 5939 8.414003 AGAGAAAGTTAAAATCCTTTTGTGGTC 58.586 33.333 0.00 0.00 34.19 4.02
2131 5940 8.306313 AGAAAGTTAAAATCCTTTTGTGGTCT 57.694 30.769 0.00 0.00 34.19 3.85
2132 5941 8.197439 AGAAAGTTAAAATCCTTTTGTGGTCTG 58.803 33.333 0.00 0.00 34.19 3.51
2133 5942 6.405278 AGTTAAAATCCTTTTGTGGTCTGG 57.595 37.500 0.00 0.00 34.19 3.86
2134 5943 3.751479 AAAATCCTTTTGTGGTCTGGC 57.249 42.857 0.00 0.00 0.00 4.85
2135 5944 2.683211 AATCCTTTTGTGGTCTGGCT 57.317 45.000 0.00 0.00 0.00 4.75
2136 5945 2.683211 ATCCTTTTGTGGTCTGGCTT 57.317 45.000 0.00 0.00 0.00 4.35
2137 5946 3.806949 ATCCTTTTGTGGTCTGGCTTA 57.193 42.857 0.00 0.00 0.00 3.09
2138 5947 3.140325 TCCTTTTGTGGTCTGGCTTAG 57.860 47.619 0.00 0.00 0.00 2.18
2139 5948 2.441750 TCCTTTTGTGGTCTGGCTTAGT 59.558 45.455 0.00 0.00 0.00 2.24
2140 5949 3.117663 TCCTTTTGTGGTCTGGCTTAGTT 60.118 43.478 0.00 0.00 0.00 2.24
2141 5950 4.103469 TCCTTTTGTGGTCTGGCTTAGTTA 59.897 41.667 0.00 0.00 0.00 2.24
2142 5951 4.825085 CCTTTTGTGGTCTGGCTTAGTTAA 59.175 41.667 0.00 0.00 0.00 2.01
2143 5952 5.300792 CCTTTTGTGGTCTGGCTTAGTTAAA 59.699 40.000 0.00 0.00 0.00 1.52
2144 5953 6.385649 TTTTGTGGTCTGGCTTAGTTAAAG 57.614 37.500 0.00 0.00 38.32 1.85
2145 5954 4.699925 TGTGGTCTGGCTTAGTTAAAGT 57.300 40.909 0.00 0.00 37.53 2.66
2146 5955 4.638304 TGTGGTCTGGCTTAGTTAAAGTC 58.362 43.478 0.00 0.00 40.44 3.01
2147 5956 4.001652 GTGGTCTGGCTTAGTTAAAGTCC 58.998 47.826 0.00 0.00 39.19 3.85
2148 5957 3.908103 TGGTCTGGCTTAGTTAAAGTCCT 59.092 43.478 0.00 0.00 39.19 3.85
2149 5958 4.349930 TGGTCTGGCTTAGTTAAAGTCCTT 59.650 41.667 0.00 0.00 39.19 3.36
2150 5959 5.163131 TGGTCTGGCTTAGTTAAAGTCCTTT 60.163 40.000 0.00 0.00 39.19 3.11
2151 5960 5.768662 GGTCTGGCTTAGTTAAAGTCCTTTT 59.231 40.000 0.00 0.00 39.19 2.27
2152 5961 6.294010 GGTCTGGCTTAGTTAAAGTCCTTTTG 60.294 42.308 0.00 0.00 39.19 2.44
2153 5962 6.262496 GTCTGGCTTAGTTAAAGTCCTTTTGT 59.738 38.462 0.00 0.00 39.19 2.83
2154 5963 6.262273 TCTGGCTTAGTTAAAGTCCTTTTGTG 59.738 38.462 0.00 0.00 39.19 3.33
2155 5964 5.300792 TGGCTTAGTTAAAGTCCTTTTGTGG 59.699 40.000 0.00 0.00 39.19 4.17
2156 5965 5.301045 GGCTTAGTTAAAGTCCTTTTGTGGT 59.699 40.000 0.00 0.00 37.53 4.16
2157 5966 6.436261 GCTTAGTTAAAGTCCTTTTGTGGTC 58.564 40.000 0.00 0.00 37.53 4.02
2158 5967 6.262496 GCTTAGTTAAAGTCCTTTTGTGGTCT 59.738 38.462 0.00 0.00 37.53 3.85
2159 5968 7.562454 TTAGTTAAAGTCCTTTTGTGGTCTG 57.438 36.000 0.00 0.00 34.23 3.51
2160 5969 4.887655 AGTTAAAGTCCTTTTGTGGTCTGG 59.112 41.667 0.00 0.00 34.23 3.86
2161 5970 1.692411 AAGTCCTTTTGTGGTCTGGC 58.308 50.000 0.00 0.00 0.00 4.85
2162 5971 0.846693 AGTCCTTTTGTGGTCTGGCT 59.153 50.000 0.00 0.00 0.00 4.75
2163 5972 1.215423 AGTCCTTTTGTGGTCTGGCTT 59.785 47.619 0.00 0.00 0.00 4.35
2164 5973 2.441750 AGTCCTTTTGTGGTCTGGCTTA 59.558 45.455 0.00 0.00 0.00 3.09
2165 5974 2.814336 GTCCTTTTGTGGTCTGGCTTAG 59.186 50.000 0.00 0.00 0.00 2.18
2166 5975 2.162681 CCTTTTGTGGTCTGGCTTAGG 58.837 52.381 0.00 0.00 0.00 2.69
2167 5976 2.489073 CCTTTTGTGGTCTGGCTTAGGT 60.489 50.000 0.00 0.00 0.00 3.08
2168 5977 2.561478 TTTGTGGTCTGGCTTAGGTC 57.439 50.000 0.00 0.00 0.00 3.85
2169 5978 1.729586 TTGTGGTCTGGCTTAGGTCT 58.270 50.000 0.00 0.00 0.00 3.85
2170 5979 1.267121 TGTGGTCTGGCTTAGGTCTC 58.733 55.000 0.00 0.00 0.00 3.36
2171 5980 0.537653 GTGGTCTGGCTTAGGTCTCC 59.462 60.000 0.00 0.00 0.00 3.71
2172 5981 0.116342 TGGTCTGGCTTAGGTCTCCA 59.884 55.000 0.00 0.00 0.00 3.86
2173 5982 1.273838 TGGTCTGGCTTAGGTCTCCAT 60.274 52.381 0.00 0.00 0.00 3.41
2174 5983 1.139853 GGTCTGGCTTAGGTCTCCATG 59.860 57.143 0.00 0.00 0.00 3.66
2175 5984 1.139853 GTCTGGCTTAGGTCTCCATGG 59.860 57.143 4.97 4.97 0.00 3.66
2176 5985 1.008327 TCTGGCTTAGGTCTCCATGGA 59.992 52.381 15.27 15.27 0.00 3.41
2177 5986 1.839994 CTGGCTTAGGTCTCCATGGAA 59.160 52.381 17.00 4.18 0.00 3.53
2178 5987 2.239654 CTGGCTTAGGTCTCCATGGAAA 59.760 50.000 17.00 0.00 0.00 3.13
2179 5988 2.239654 TGGCTTAGGTCTCCATGGAAAG 59.760 50.000 17.00 16.35 0.00 2.62
2180 5989 2.505819 GGCTTAGGTCTCCATGGAAAGA 59.494 50.000 22.05 12.47 0.00 2.52
2181 5990 3.432890 GGCTTAGGTCTCCATGGAAAGAG 60.433 52.174 22.05 9.42 0.00 2.85
2182 5991 3.432890 GCTTAGGTCTCCATGGAAAGAGG 60.433 52.174 22.05 9.08 0.00 3.69
2183 5992 2.350863 AGGTCTCCATGGAAAGAGGT 57.649 50.000 17.00 0.00 0.00 3.85
2184 5993 1.912043 AGGTCTCCATGGAAAGAGGTG 59.088 52.381 17.00 1.92 0.00 4.00
2185 5994 1.065126 GGTCTCCATGGAAAGAGGTGG 60.065 57.143 17.00 1.11 0.00 4.61
2186 5995 1.630878 GTCTCCATGGAAAGAGGTGGT 59.369 52.381 17.00 0.00 0.00 4.16
2187 5996 1.909302 TCTCCATGGAAAGAGGTGGTC 59.091 52.381 17.00 0.00 0.00 4.02
2188 5997 1.912043 CTCCATGGAAAGAGGTGGTCT 59.088 52.381 17.00 0.00 36.94 3.85
2189 5998 1.909302 TCCATGGAAAGAGGTGGTCTC 59.091 52.381 13.46 0.00 42.75 3.36
2200 6009 4.292977 GAGGTGGTCTCTGTTTTGTTTG 57.707 45.455 0.00 0.00 39.38 2.93
2201 6010 3.694566 GAGGTGGTCTCTGTTTTGTTTGT 59.305 43.478 0.00 0.00 39.38 2.83
2202 6011 4.086457 AGGTGGTCTCTGTTTTGTTTGTT 58.914 39.130 0.00 0.00 0.00 2.83
2203 6012 4.526650 AGGTGGTCTCTGTTTTGTTTGTTT 59.473 37.500 0.00 0.00 0.00 2.83
2204 6013 4.862574 GGTGGTCTCTGTTTTGTTTGTTTC 59.137 41.667 0.00 0.00 0.00 2.78
2205 6014 5.336451 GGTGGTCTCTGTTTTGTTTGTTTCT 60.336 40.000 0.00 0.00 0.00 2.52
2206 6015 5.800438 GTGGTCTCTGTTTTGTTTGTTTCTC 59.200 40.000 0.00 0.00 0.00 2.87
2207 6016 5.105917 TGGTCTCTGTTTTGTTTGTTTCTCC 60.106 40.000 0.00 0.00 0.00 3.71
2208 6017 5.125578 GGTCTCTGTTTTGTTTGTTTCTCCT 59.874 40.000 0.00 0.00 0.00 3.69
2209 6018 6.030228 GTCTCTGTTTTGTTTGTTTCTCCTG 58.970 40.000 0.00 0.00 0.00 3.86
2210 6019 4.743493 TCTGTTTTGTTTGTTTCTCCTGC 58.257 39.130 0.00 0.00 0.00 4.85
2211 6020 4.219507 TCTGTTTTGTTTGTTTCTCCTGCA 59.780 37.500 0.00 0.00 0.00 4.41
2212 6021 5.083533 TGTTTTGTTTGTTTCTCCTGCAT 57.916 34.783 0.00 0.00 0.00 3.96
2213 6022 6.096141 TCTGTTTTGTTTGTTTCTCCTGCATA 59.904 34.615 0.00 0.00 0.00 3.14
2214 6023 6.815089 TGTTTTGTTTGTTTCTCCTGCATAT 58.185 32.000 0.00 0.00 0.00 1.78
2215 6024 7.946207 TGTTTTGTTTGTTTCTCCTGCATATA 58.054 30.769 0.00 0.00 0.00 0.86
2216 6025 8.417106 TGTTTTGTTTGTTTCTCCTGCATATAA 58.583 29.630 0.00 0.00 0.00 0.98
2217 6026 9.255304 GTTTTGTTTGTTTCTCCTGCATATAAA 57.745 29.630 0.00 0.00 0.00 1.40
2218 6027 8.810652 TTTGTTTGTTTCTCCTGCATATAAAC 57.189 30.769 0.00 0.00 0.00 2.01
2219 6028 6.919721 TGTTTGTTTCTCCTGCATATAAACC 58.080 36.000 9.98 0.06 30.75 3.27
2220 6029 6.491745 TGTTTGTTTCTCCTGCATATAAACCA 59.508 34.615 9.98 0.21 30.75 3.67
2221 6030 7.178274 TGTTTGTTTCTCCTGCATATAAACCAT 59.822 33.333 9.98 0.00 30.75 3.55
2222 6031 6.942532 TGTTTCTCCTGCATATAAACCATC 57.057 37.500 9.98 0.00 30.75 3.51
2223 6032 6.422333 TGTTTCTCCTGCATATAAACCATCA 58.578 36.000 9.98 0.00 30.75 3.07
2224 6033 6.543465 TGTTTCTCCTGCATATAAACCATCAG 59.457 38.462 9.98 0.00 30.75 2.90
2225 6034 6.499106 TTCTCCTGCATATAAACCATCAGA 57.501 37.500 0.00 0.00 0.00 3.27
2226 6035 6.692849 TCTCCTGCATATAAACCATCAGAT 57.307 37.500 0.00 0.00 0.00 2.90
2227 6036 6.470278 TCTCCTGCATATAAACCATCAGATG 58.530 40.000 3.04 3.04 0.00 2.90
2228 6037 6.043590 TCTCCTGCATATAAACCATCAGATGT 59.956 38.462 9.64 0.00 0.00 3.06
2229 6038 6.604171 TCCTGCATATAAACCATCAGATGTT 58.396 36.000 9.64 0.92 0.00 2.71
2230 6039 7.062322 TCCTGCATATAAACCATCAGATGTTT 58.938 34.615 9.64 11.48 0.00 2.83
2231 6040 7.560991 TCCTGCATATAAACCATCAGATGTTTT 59.439 33.333 10.49 10.49 0.00 2.43
2232 6041 8.199449 CCTGCATATAAACCATCAGATGTTTTT 58.801 33.333 10.87 10.72 0.00 1.94
2253 6062 7.989416 TTTTTATAATCGTGTCCCCATATCC 57.011 36.000 0.00 0.00 0.00 2.59
2254 6063 5.687166 TTATAATCGTGTCCCCATATCCC 57.313 43.478 0.00 0.00 0.00 3.85
2255 6064 1.814429 AATCGTGTCCCCATATCCCA 58.186 50.000 0.00 0.00 0.00 4.37
2256 6065 2.044793 ATCGTGTCCCCATATCCCAT 57.955 50.000 0.00 0.00 0.00 4.00
2257 6066 1.814429 TCGTGTCCCCATATCCCATT 58.186 50.000 0.00 0.00 0.00 3.16
2258 6067 2.131854 TCGTGTCCCCATATCCCATTT 58.868 47.619 0.00 0.00 0.00 2.32
2259 6068 3.319220 TCGTGTCCCCATATCCCATTTA 58.681 45.455 0.00 0.00 0.00 1.40
2260 6069 3.071892 TCGTGTCCCCATATCCCATTTAC 59.928 47.826 0.00 0.00 0.00 2.01
2261 6070 3.181449 CGTGTCCCCATATCCCATTTACA 60.181 47.826 0.00 0.00 0.00 2.41
2262 6071 4.398319 GTGTCCCCATATCCCATTTACAG 58.602 47.826 0.00 0.00 0.00 2.74
2263 6072 4.104102 GTGTCCCCATATCCCATTTACAGA 59.896 45.833 0.00 0.00 0.00 3.41
2264 6073 4.919510 TGTCCCCATATCCCATTTACAGAT 59.080 41.667 0.00 0.00 0.00 2.90
2265 6074 5.222109 TGTCCCCATATCCCATTTACAGATG 60.222 44.000 0.00 0.00 0.00 2.90
2266 6075 5.014123 GTCCCCATATCCCATTTACAGATGA 59.986 44.000 0.00 0.00 0.00 2.92
2267 6076 5.014123 TCCCCATATCCCATTTACAGATGAC 59.986 44.000 0.00 0.00 0.00 3.06
2268 6077 5.222109 CCCCATATCCCATTTACAGATGACA 60.222 44.000 0.00 0.00 0.00 3.58
2269 6078 6.487828 CCCATATCCCATTTACAGATGACAT 58.512 40.000 0.00 0.00 0.00 3.06
2270 6079 7.311865 CCCCATATCCCATTTACAGATGACATA 60.312 40.741 0.00 0.00 0.00 2.29
2271 6080 7.772292 CCCATATCCCATTTACAGATGACATAG 59.228 40.741 0.00 0.00 0.00 2.23
2272 6081 8.542926 CCATATCCCATTTACAGATGACATAGA 58.457 37.037 0.00 0.00 0.00 1.98
2273 6082 9.376075 CATATCCCATTTACAGATGACATAGAC 57.624 37.037 0.00 0.00 0.00 2.59
2274 6083 7.623999 ATCCCATTTACAGATGACATAGACT 57.376 36.000 0.00 0.00 0.00 3.24
2275 6084 6.820335 TCCCATTTACAGATGACATAGACTG 58.180 40.000 0.00 0.00 36.58 3.51
2276 6085 6.384015 TCCCATTTACAGATGACATAGACTGT 59.616 38.462 11.68 11.68 44.17 3.55
2277 6086 7.050377 CCCATTTACAGATGACATAGACTGTT 58.950 38.462 12.09 0.00 42.39 3.16
2278 6087 7.225538 CCCATTTACAGATGACATAGACTGTTC 59.774 40.741 12.09 0.00 42.39 3.18
2279 6088 7.043125 CCATTTACAGATGACATAGACTGTTCG 60.043 40.741 12.09 2.05 42.39 3.95
2280 6089 3.775202 ACAGATGACATAGACTGTTCGC 58.225 45.455 3.11 0.00 40.03 4.70
2281 6090 3.445450 ACAGATGACATAGACTGTTCGCT 59.555 43.478 3.11 0.00 40.03 4.93
2282 6091 4.081972 ACAGATGACATAGACTGTTCGCTT 60.082 41.667 3.11 0.00 40.03 4.68
2283 6092 4.502282 CAGATGACATAGACTGTTCGCTTC 59.498 45.833 0.00 0.00 38.54 3.86
2284 6093 3.934457 TGACATAGACTGTTCGCTTCA 57.066 42.857 0.00 0.00 38.54 3.02
2285 6094 4.456280 TGACATAGACTGTTCGCTTCAT 57.544 40.909 0.00 0.00 38.54 2.57
2286 6095 4.820897 TGACATAGACTGTTCGCTTCATT 58.179 39.130 0.00 0.00 38.54 2.57
2287 6096 5.961272 TGACATAGACTGTTCGCTTCATTA 58.039 37.500 0.00 0.00 38.54 1.90
2288 6097 5.805486 TGACATAGACTGTTCGCTTCATTAC 59.195 40.000 0.00 0.00 38.54 1.89
2289 6098 5.967088 ACATAGACTGTTCGCTTCATTACT 58.033 37.500 0.00 0.00 32.90 2.24
2290 6099 7.096884 ACATAGACTGTTCGCTTCATTACTA 57.903 36.000 0.00 0.00 32.90 1.82
2291 6100 7.197017 ACATAGACTGTTCGCTTCATTACTAG 58.803 38.462 0.00 0.00 32.90 2.57
2292 6101 5.646577 AGACTGTTCGCTTCATTACTAGT 57.353 39.130 0.00 0.00 0.00 2.57
2293 6102 6.026947 AGACTGTTCGCTTCATTACTAGTT 57.973 37.500 0.00 0.00 0.00 2.24
2294 6103 6.094061 AGACTGTTCGCTTCATTACTAGTTC 58.906 40.000 0.00 0.00 0.00 3.01
2295 6104 5.779922 ACTGTTCGCTTCATTACTAGTTCA 58.220 37.500 0.00 0.00 0.00 3.18
2296 6105 6.220930 ACTGTTCGCTTCATTACTAGTTCAA 58.779 36.000 0.00 0.00 0.00 2.69
2297 6106 6.704493 ACTGTTCGCTTCATTACTAGTTCAAA 59.296 34.615 0.00 0.00 0.00 2.69
2298 6107 7.095607 ACTGTTCGCTTCATTACTAGTTCAAAG 60.096 37.037 0.00 1.88 0.00 2.77
2299 6108 5.779806 TCGCTTCATTACTAGTTCAAAGC 57.220 39.130 0.00 10.71 35.48 3.51
2300 6109 5.479306 TCGCTTCATTACTAGTTCAAAGCT 58.521 37.500 20.27 0.00 36.41 3.74
2301 6110 5.932303 TCGCTTCATTACTAGTTCAAAGCTT 59.068 36.000 20.27 0.00 36.41 3.74
2302 6111 6.090898 TCGCTTCATTACTAGTTCAAAGCTTC 59.909 38.462 20.27 0.00 36.41 3.86
2303 6112 6.128553 CGCTTCATTACTAGTTCAAAGCTTCA 60.129 38.462 20.27 0.00 36.41 3.02
2304 6113 7.239972 GCTTCATTACTAGTTCAAAGCTTCAG 58.760 38.462 17.65 0.00 35.83 3.02
2305 6114 6.727824 TCATTACTAGTTCAAAGCTTCAGC 57.272 37.500 0.00 0.00 42.49 4.26
2306 6115 5.643777 TCATTACTAGTTCAAAGCTTCAGCC 59.356 40.000 0.00 0.00 43.38 4.85
2307 6116 3.778954 ACTAGTTCAAAGCTTCAGCCT 57.221 42.857 0.00 0.00 43.38 4.58
2308 6117 3.669536 ACTAGTTCAAAGCTTCAGCCTC 58.330 45.455 0.00 0.00 43.38 4.70
2309 6118 2.947127 AGTTCAAAGCTTCAGCCTCT 57.053 45.000 0.00 0.00 43.38 3.69
2310 6119 3.220674 AGTTCAAAGCTTCAGCCTCTT 57.779 42.857 0.00 0.00 43.38 2.85
2311 6120 2.883386 AGTTCAAAGCTTCAGCCTCTTG 59.117 45.455 0.00 0.00 43.38 3.02
2312 6121 1.901591 TCAAAGCTTCAGCCTCTTGG 58.098 50.000 0.00 0.00 43.38 3.61
2313 6122 1.421268 TCAAAGCTTCAGCCTCTTGGA 59.579 47.619 0.00 0.00 43.38 3.53
2314 6123 2.040813 TCAAAGCTTCAGCCTCTTGGAT 59.959 45.455 0.00 0.00 43.38 3.41
2315 6124 2.824341 CAAAGCTTCAGCCTCTTGGATT 59.176 45.455 0.00 0.00 43.38 3.01
2316 6125 4.012374 CAAAGCTTCAGCCTCTTGGATTA 58.988 43.478 0.00 0.00 43.38 1.75
2317 6126 4.516652 AAGCTTCAGCCTCTTGGATTAT 57.483 40.909 0.00 0.00 43.38 1.28
2318 6127 4.516652 AGCTTCAGCCTCTTGGATTATT 57.483 40.909 0.00 0.00 43.38 1.40
2319 6128 4.864726 AGCTTCAGCCTCTTGGATTATTT 58.135 39.130 0.00 0.00 43.38 1.40
2320 6129 4.643784 AGCTTCAGCCTCTTGGATTATTTG 59.356 41.667 0.00 0.00 43.38 2.32
2321 6130 4.202090 GCTTCAGCCTCTTGGATTATTTGG 60.202 45.833 0.00 0.00 34.57 3.28
2322 6131 4.591321 TCAGCCTCTTGGATTATTTGGT 57.409 40.909 0.00 0.00 34.57 3.67
2323 6132 4.934356 TCAGCCTCTTGGATTATTTGGTT 58.066 39.130 0.00 0.00 34.57 3.67
2324 6133 4.706476 TCAGCCTCTTGGATTATTTGGTTG 59.294 41.667 0.00 0.00 34.57 3.77
2325 6134 4.706476 CAGCCTCTTGGATTATTTGGTTGA 59.294 41.667 0.00 0.00 34.57 3.18
2326 6135 4.952335 AGCCTCTTGGATTATTTGGTTGAG 59.048 41.667 0.00 0.00 34.57 3.02
2327 6136 4.440663 GCCTCTTGGATTATTTGGTTGAGC 60.441 45.833 0.00 0.00 34.57 4.26
2328 6137 4.098501 CCTCTTGGATTATTTGGTTGAGCC 59.901 45.833 0.00 0.00 34.57 4.70
2329 6138 4.934356 TCTTGGATTATTTGGTTGAGCCT 58.066 39.130 0.00 0.00 38.35 4.58
2330 6139 4.706476 TCTTGGATTATTTGGTTGAGCCTG 59.294 41.667 0.00 0.00 38.35 4.85
2331 6140 4.314522 TGGATTATTTGGTTGAGCCTGA 57.685 40.909 0.00 0.00 38.35 3.86
2332 6141 4.016444 TGGATTATTTGGTTGAGCCTGAC 58.984 43.478 0.00 0.00 38.35 3.51
2333 6142 3.381590 GGATTATTTGGTTGAGCCTGACC 59.618 47.826 0.00 0.00 38.35 4.02
2334 6143 3.517296 TTATTTGGTTGAGCCTGACCA 57.483 42.857 0.00 0.00 43.87 4.02
2335 6144 2.610438 ATTTGGTTGAGCCTGACCAT 57.390 45.000 3.81 0.00 44.83 3.55
2336 6145 2.380064 TTTGGTTGAGCCTGACCATT 57.620 45.000 3.81 0.00 44.83 3.16
2337 6146 1.619654 TTGGTTGAGCCTGACCATTG 58.380 50.000 3.81 0.00 44.83 2.82
2338 6147 0.478072 TGGTTGAGCCTGACCATTGT 59.522 50.000 0.00 0.00 40.85 2.71
2339 6148 1.168714 GGTTGAGCCTGACCATTGTC 58.831 55.000 0.00 0.00 42.12 3.18
2340 6149 0.798776 GTTGAGCCTGACCATTGTCG 59.201 55.000 0.00 0.00 44.86 4.35
2341 6150 0.684535 TTGAGCCTGACCATTGTCGA 59.315 50.000 0.00 0.00 44.86 4.20
2342 6151 0.684535 TGAGCCTGACCATTGTCGAA 59.315 50.000 0.00 0.00 44.86 3.71
2343 6152 1.278985 TGAGCCTGACCATTGTCGAAT 59.721 47.619 0.00 0.00 44.86 3.34
2344 6153 2.290260 TGAGCCTGACCATTGTCGAATT 60.290 45.455 0.00 0.00 44.86 2.17
2345 6154 2.086869 AGCCTGACCATTGTCGAATTG 58.913 47.619 0.00 0.00 44.86 2.32
2346 6155 1.812571 GCCTGACCATTGTCGAATTGT 59.187 47.619 0.00 0.00 44.86 2.71
2347 6156 2.159517 GCCTGACCATTGTCGAATTGTC 60.160 50.000 0.00 0.00 44.86 3.18
2360 6169 2.207590 GAATTGTCGAACCGTATCCCC 58.792 52.381 0.00 0.00 0.00 4.81
2361 6170 0.466963 ATTGTCGAACCGTATCCCCC 59.533 55.000 0.00 0.00 0.00 5.40
2377 6186 2.729028 CCCCCTTTGGTAATGATCGT 57.271 50.000 0.00 0.00 0.00 3.73
2378 6187 2.297701 CCCCCTTTGGTAATGATCGTG 58.702 52.381 0.00 0.00 0.00 4.35
2379 6188 1.676006 CCCCTTTGGTAATGATCGTGC 59.324 52.381 0.00 0.00 0.00 5.34
2380 6189 2.643551 CCCTTTGGTAATGATCGTGCT 58.356 47.619 0.00 0.00 0.00 4.40
2381 6190 3.433031 CCCCTTTGGTAATGATCGTGCTA 60.433 47.826 0.00 0.00 0.00 3.49
2382 6191 3.809832 CCCTTTGGTAATGATCGTGCTAG 59.190 47.826 0.00 0.00 0.00 3.42
2383 6192 4.442706 CCTTTGGTAATGATCGTGCTAGT 58.557 43.478 0.00 0.00 0.00 2.57
2384 6193 4.876107 CCTTTGGTAATGATCGTGCTAGTT 59.124 41.667 0.00 0.00 0.00 2.24
2385 6194 5.220662 CCTTTGGTAATGATCGTGCTAGTTG 60.221 44.000 0.00 0.00 0.00 3.16
2386 6195 4.465632 TGGTAATGATCGTGCTAGTTGT 57.534 40.909 0.00 0.00 0.00 3.32
2387 6196 4.180817 TGGTAATGATCGTGCTAGTTGTG 58.819 43.478 0.00 0.00 0.00 3.33
2388 6197 4.181578 GGTAATGATCGTGCTAGTTGTGT 58.818 43.478 0.00 0.00 0.00 3.72
2389 6198 4.032900 GGTAATGATCGTGCTAGTTGTGTG 59.967 45.833 0.00 0.00 0.00 3.82
2390 6199 1.428448 TGATCGTGCTAGTTGTGTGC 58.572 50.000 0.00 0.00 0.00 4.57
2391 6200 0.721718 GATCGTGCTAGTTGTGTGCC 59.278 55.000 0.00 0.00 0.00 5.01
2392 6201 0.321671 ATCGTGCTAGTTGTGTGCCT 59.678 50.000 0.00 0.00 0.00 4.75
2393 6202 0.319555 TCGTGCTAGTTGTGTGCCTC 60.320 55.000 0.00 0.00 0.00 4.70
2394 6203 0.319900 CGTGCTAGTTGTGTGCCTCT 60.320 55.000 0.00 0.00 0.00 3.69
2395 6204 1.151668 GTGCTAGTTGTGTGCCTCTG 58.848 55.000 0.00 0.00 0.00 3.35
2396 6205 0.603707 TGCTAGTTGTGTGCCTCTGC 60.604 55.000 0.00 0.00 38.26 4.26
2397 6206 0.321122 GCTAGTTGTGTGCCTCTGCT 60.321 55.000 0.00 0.00 38.71 4.24
2398 6207 1.879796 GCTAGTTGTGTGCCTCTGCTT 60.880 52.381 0.00 0.00 38.71 3.91
2399 6208 2.498167 CTAGTTGTGTGCCTCTGCTTT 58.502 47.619 0.00 0.00 38.71 3.51
2400 6209 2.638480 AGTTGTGTGCCTCTGCTTTA 57.362 45.000 0.00 0.00 38.71 1.85
2401 6210 3.146104 AGTTGTGTGCCTCTGCTTTAT 57.854 42.857 0.00 0.00 38.71 1.40
2402 6211 4.286297 AGTTGTGTGCCTCTGCTTTATA 57.714 40.909 0.00 0.00 38.71 0.98
2403 6212 4.256920 AGTTGTGTGCCTCTGCTTTATAG 58.743 43.478 0.00 0.00 38.71 1.31
2404 6213 3.981071 TGTGTGCCTCTGCTTTATAGT 57.019 42.857 0.00 0.00 38.71 2.12
2405 6214 5.046591 AGTTGTGTGCCTCTGCTTTATAGTA 60.047 40.000 0.00 0.00 38.71 1.82
2406 6215 4.755411 TGTGTGCCTCTGCTTTATAGTAC 58.245 43.478 0.00 0.00 38.71 2.73
2407 6216 4.466370 TGTGTGCCTCTGCTTTATAGTACT 59.534 41.667 0.00 0.00 38.71 2.73
2408 6217 5.655090 TGTGTGCCTCTGCTTTATAGTACTA 59.345 40.000 4.77 4.77 38.71 1.82
2409 6218 6.183360 TGTGTGCCTCTGCTTTATAGTACTAG 60.183 42.308 8.85 0.00 38.71 2.57
2410 6219 5.892119 TGTGCCTCTGCTTTATAGTACTAGT 59.108 40.000 8.85 0.00 38.71 2.57
2411 6220 7.013083 GTGTGCCTCTGCTTTATAGTACTAGTA 59.987 40.741 8.85 0.00 38.71 1.82
2412 6221 7.724506 TGTGCCTCTGCTTTATAGTACTAGTAT 59.275 37.037 5.75 0.00 38.71 2.12
2413 6222 9.228949 GTGCCTCTGCTTTATAGTACTAGTATA 57.771 37.037 5.75 0.70 38.71 1.47
2414 6223 9.803507 TGCCTCTGCTTTATAGTACTAGTATAA 57.196 33.333 5.75 0.00 38.71 0.98
2439 6248 3.084070 GCATATTTGCTACCCAAGTGC 57.916 47.619 0.35 0.00 45.77 4.40
2440 6249 2.223805 GCATATTTGCTACCCAAGTGCC 60.224 50.000 0.35 0.00 45.77 5.01
2441 6250 1.745232 TATTTGCTACCCAAGTGCCG 58.255 50.000 0.00 0.00 34.34 5.69
2442 6251 0.251165 ATTTGCTACCCAAGTGCCGT 60.251 50.000 0.00 0.00 34.34 5.68
2443 6252 0.466555 TTTGCTACCCAAGTGCCGTT 60.467 50.000 0.00 0.00 34.34 4.44
2444 6253 1.169661 TTGCTACCCAAGTGCCGTTG 61.170 55.000 0.00 0.00 0.00 4.10
2445 6254 1.599797 GCTACCCAAGTGCCGTTGT 60.600 57.895 0.00 0.00 0.00 3.32
2446 6255 1.852067 GCTACCCAAGTGCCGTTGTG 61.852 60.000 0.00 0.00 0.00 3.33
2447 6256 1.852067 CTACCCAAGTGCCGTTGTGC 61.852 60.000 0.00 0.00 0.00 4.57
2448 6257 2.610532 TACCCAAGTGCCGTTGTGCA 62.611 55.000 0.00 0.00 39.37 4.57
2449 6258 2.563798 CCCAAGTGCCGTTGTGCAT 61.564 57.895 0.00 0.00 44.30 3.96
2450 6259 1.081242 CCAAGTGCCGTTGTGCATC 60.081 57.895 0.00 0.00 44.30 3.91
2451 6260 1.081242 CAAGTGCCGTTGTGCATCC 60.081 57.895 0.00 0.00 44.30 3.51
2452 6261 1.228245 AAGTGCCGTTGTGCATCCT 60.228 52.632 0.00 0.00 44.30 3.24
2453 6262 0.823356 AAGTGCCGTTGTGCATCCTT 60.823 50.000 0.00 0.00 44.30 3.36
2454 6263 1.210155 GTGCCGTTGTGCATCCTTC 59.790 57.895 0.00 0.00 44.30 3.46
2455 6264 1.971167 TGCCGTTGTGCATCCTTCC 60.971 57.895 0.00 0.00 36.04 3.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
182 183 1.527433 CTGACACTCTGGCCACTCGA 61.527 60.000 0.00 0.00 0.00 4.04
228 229 7.710907 CCTAAACTAACTATTGCATGTAGCTCA 59.289 37.037 0.00 0.00 45.94 4.26
233 234 9.158233 GTGAACCTAAACTAACTATTGCATGTA 57.842 33.333 0.00 0.00 0.00 2.29
241 242 9.379791 GCATTAGTGTGAACCTAAACTAACTAT 57.620 33.333 0.00 0.00 37.80 2.12
260 261 4.667573 TCATATCCCTCTCTCGCATTAGT 58.332 43.478 0.00 0.00 0.00 2.24
297 298 2.288518 ACTTTGAGTGAGAGCGGAACTC 60.289 50.000 5.31 5.31 46.66 3.01
614 619 0.460311 GGAAGCGCTACTGCTAAGGA 59.540 55.000 12.05 0.00 46.60 3.36
620 625 0.108329 TTACAGGGAAGCGCTACTGC 60.108 55.000 26.75 13.18 34.40 4.40
705 710 2.181021 CTGTCGTCCCACGCTACC 59.819 66.667 0.00 0.00 42.21 3.18
744 749 1.267261 CGCTACTGATAAGGCGCTACT 59.733 52.381 7.64 0.00 41.08 2.57
943 948 8.408043 TTGAAGTTGTTCCATGATAAGTTCAT 57.592 30.769 12.10 0.00 46.27 2.57
1109 1114 2.104281 CCAGTAGGTATTTTCCCCCTCG 59.896 54.545 0.00 0.00 0.00 4.63
1125 1130 4.887071 AGTGTTTGCAGTTGATTTCCAGTA 59.113 37.500 0.00 0.00 0.00 2.74
1190 4947 1.287217 TACAGAGAGAGGAGGACCGT 58.713 55.000 0.00 0.00 41.83 4.83
1228 4985 2.899900 GGTTTTCTCCTGGAATTGGCTT 59.100 45.455 0.00 0.00 33.53 4.35
1266 5035 4.676986 GCAAGGAAAAACGAAACCAAGTCT 60.677 41.667 0.00 0.00 0.00 3.24
1297 5066 3.007723 CAGAGACCCATCACATATCCAGG 59.992 52.174 0.00 0.00 0.00 4.45
1386 5155 4.199310 GCACATACACCCAATCATACAGT 58.801 43.478 0.00 0.00 0.00 3.55
1401 5170 2.161609 GGTAACAGCCACTTGCACATAC 59.838 50.000 0.00 0.00 44.83 2.39
1617 5405 5.995565 AGTGCTGGTTCTACTACAATACA 57.004 39.130 0.00 0.00 0.00 2.29
1626 5414 2.256117 ACCACAAGTGCTGGTTCTAC 57.744 50.000 0.00 0.00 39.07 2.59
1741 5530 8.718102 ATACACCTAGAATACAAACATGTGTC 57.282 34.615 0.00 0.00 36.07 3.67
1742 5531 8.946085 CAATACACCTAGAATACAAACATGTGT 58.054 33.333 0.00 0.00 38.00 3.72
1764 5558 8.341892 TGTGCATGTTTAGTTCCAATACAATA 57.658 30.769 0.00 0.00 0.00 1.90
1831 5638 7.272731 CAGAAAGCACATAGAAAACACATCATG 59.727 37.037 0.00 0.00 0.00 3.07
1871 5679 8.075761 AGAGGACCGTCAGTTACTATAAAAAT 57.924 34.615 0.00 0.00 0.00 1.82
1880 5689 4.398673 ACATAGAAGAGGACCGTCAGTTAC 59.601 45.833 0.00 0.00 0.00 2.50
1884 5693 2.480416 GCACATAGAAGAGGACCGTCAG 60.480 54.545 0.00 0.00 0.00 3.51
1886 5695 1.751924 AGCACATAGAAGAGGACCGTC 59.248 52.381 0.00 0.00 0.00 4.79
1888 5697 2.969628 AAGCACATAGAAGAGGACCG 57.030 50.000 0.00 0.00 0.00 4.79
1895 5704 6.867662 CCATAGGGTAAAAGCACATAGAAG 57.132 41.667 0.00 0.00 0.00 2.85
1930 5739 4.329831 GCCCGGGCAAATGACTAA 57.670 55.556 40.73 0.00 41.49 2.24
1940 5749 0.670239 CATTTGAGTTTTGCCCGGGC 60.670 55.000 39.40 39.40 42.35 6.13
1941 5750 0.037419 CCATTTGAGTTTTGCCCGGG 60.037 55.000 19.09 19.09 0.00 5.73
1942 5751 0.670239 GCCATTTGAGTTTTGCCCGG 60.670 55.000 0.00 0.00 0.00 5.73
1986 5795 5.245301 CCATGTTATCATCATCCTTGCCATT 59.755 40.000 0.00 0.00 31.15 3.16
2015 5824 5.877031 ACAAAATCAGAATCAGCTTCATCG 58.123 37.500 0.00 0.00 36.24 3.84
2043 5852 3.129988 GCAGAATCAAACATCTTCCAGGG 59.870 47.826 0.00 0.00 0.00 4.45
2089 5898 7.676683 AACTTTCTCTCCATATTACTGCCTA 57.323 36.000 0.00 0.00 0.00 3.93
2115 5924 2.962859 AGCCAGACCACAAAAGGATTT 58.037 42.857 0.00 0.00 42.41 2.17
2116 5925 2.683211 AGCCAGACCACAAAAGGATT 57.317 45.000 0.00 0.00 0.00 3.01
2117 5926 2.683211 AAGCCAGACCACAAAAGGAT 57.317 45.000 0.00 0.00 0.00 3.24
2118 5927 2.441750 ACTAAGCCAGACCACAAAAGGA 59.558 45.455 0.00 0.00 0.00 3.36
2119 5928 2.863809 ACTAAGCCAGACCACAAAAGG 58.136 47.619 0.00 0.00 0.00 3.11
2120 5929 6.039382 ACTTTAACTAAGCCAGACCACAAAAG 59.961 38.462 0.00 0.00 37.37 2.27
2121 5930 5.889289 ACTTTAACTAAGCCAGACCACAAAA 59.111 36.000 0.00 0.00 37.37 2.44
2122 5931 5.442391 ACTTTAACTAAGCCAGACCACAAA 58.558 37.500 0.00 0.00 37.37 2.83
2123 5932 5.043737 ACTTTAACTAAGCCAGACCACAA 57.956 39.130 0.00 0.00 37.37 3.33
2124 5933 4.504340 GGACTTTAACTAAGCCAGACCACA 60.504 45.833 0.00 0.00 37.37 4.17
2125 5934 4.001652 GGACTTTAACTAAGCCAGACCAC 58.998 47.826 0.00 0.00 37.37 4.16
2126 5935 3.908103 AGGACTTTAACTAAGCCAGACCA 59.092 43.478 0.00 0.00 37.37 4.02
2127 5936 4.554960 AGGACTTTAACTAAGCCAGACC 57.445 45.455 0.00 0.00 37.37 3.85
2128 5937 6.262496 ACAAAAGGACTTTAACTAAGCCAGAC 59.738 38.462 0.00 0.00 37.37 3.51
2129 5938 6.262273 CACAAAAGGACTTTAACTAAGCCAGA 59.738 38.462 0.00 0.00 37.37 3.86
2130 5939 6.438763 CACAAAAGGACTTTAACTAAGCCAG 58.561 40.000 0.00 0.00 37.37 4.85
2131 5940 5.300792 CCACAAAAGGACTTTAACTAAGCCA 59.699 40.000 0.00 0.00 37.37 4.75
2132 5941 5.301045 ACCACAAAAGGACTTTAACTAAGCC 59.699 40.000 0.00 0.00 37.37 4.35
2133 5942 6.262496 AGACCACAAAAGGACTTTAACTAAGC 59.738 38.462 0.00 0.00 37.37 3.09
2134 5943 7.255139 CCAGACCACAAAAGGACTTTAACTAAG 60.255 40.741 0.00 0.00 39.87 2.18
2135 5944 6.544564 CCAGACCACAAAAGGACTTTAACTAA 59.455 38.462 0.00 0.00 31.25 2.24
2136 5945 6.059484 CCAGACCACAAAAGGACTTTAACTA 58.941 40.000 0.00 0.00 31.25 2.24
2137 5946 4.887655 CCAGACCACAAAAGGACTTTAACT 59.112 41.667 0.00 0.00 31.25 2.24
2138 5947 4.499188 GCCAGACCACAAAAGGACTTTAAC 60.499 45.833 0.00 0.00 31.25 2.01
2139 5948 3.634910 GCCAGACCACAAAAGGACTTTAA 59.365 43.478 0.00 0.00 31.25 1.52
2140 5949 3.117663 AGCCAGACCACAAAAGGACTTTA 60.118 43.478 0.00 0.00 31.25 1.85
2141 5950 2.031870 GCCAGACCACAAAAGGACTTT 58.968 47.619 0.00 0.00 31.25 2.66
2142 5951 1.215423 AGCCAGACCACAAAAGGACTT 59.785 47.619 0.00 0.00 31.25 3.01
2143 5952 0.846693 AGCCAGACCACAAAAGGACT 59.153 50.000 0.00 0.00 33.94 3.85
2144 5953 1.692411 AAGCCAGACCACAAAAGGAC 58.308 50.000 0.00 0.00 0.00 3.85
2145 5954 2.224769 CCTAAGCCAGACCACAAAAGGA 60.225 50.000 0.00 0.00 0.00 3.36
2146 5955 2.162681 CCTAAGCCAGACCACAAAAGG 58.837 52.381 0.00 0.00 0.00 3.11
2147 5956 2.814336 GACCTAAGCCAGACCACAAAAG 59.186 50.000 0.00 0.00 0.00 2.27
2148 5957 2.441750 AGACCTAAGCCAGACCACAAAA 59.558 45.455 0.00 0.00 0.00 2.44
2149 5958 2.038557 GAGACCTAAGCCAGACCACAAA 59.961 50.000 0.00 0.00 0.00 2.83
2150 5959 1.623811 GAGACCTAAGCCAGACCACAA 59.376 52.381 0.00 0.00 0.00 3.33
2151 5960 1.267121 GAGACCTAAGCCAGACCACA 58.733 55.000 0.00 0.00 0.00 4.17
2152 5961 0.537653 GGAGACCTAAGCCAGACCAC 59.462 60.000 0.00 0.00 0.00 4.16
2153 5962 0.116342 TGGAGACCTAAGCCAGACCA 59.884 55.000 0.00 0.00 0.00 4.02
2154 5963 1.139853 CATGGAGACCTAAGCCAGACC 59.860 57.143 0.00 0.00 34.74 3.85
2155 5964 1.139853 CCATGGAGACCTAAGCCAGAC 59.860 57.143 5.56 0.00 34.74 3.51
2156 5965 1.008327 TCCATGGAGACCTAAGCCAGA 59.992 52.381 11.44 0.00 34.74 3.86
2157 5966 1.500474 TCCATGGAGACCTAAGCCAG 58.500 55.000 11.44 0.00 34.74 4.85
2158 5967 1.965414 TTCCATGGAGACCTAAGCCA 58.035 50.000 15.53 0.00 35.91 4.75
2159 5968 2.505819 TCTTTCCATGGAGACCTAAGCC 59.494 50.000 15.53 0.00 0.00 4.35
2160 5969 3.432890 CCTCTTTCCATGGAGACCTAAGC 60.433 52.174 15.53 0.00 0.00 3.09
2161 5970 3.777522 ACCTCTTTCCATGGAGACCTAAG 59.222 47.826 15.53 14.95 0.00 2.18
2162 5971 3.519510 CACCTCTTTCCATGGAGACCTAA 59.480 47.826 15.53 5.05 0.00 2.69
2163 5972 3.107601 CACCTCTTTCCATGGAGACCTA 58.892 50.000 15.53 0.00 0.00 3.08
2164 5973 1.912043 CACCTCTTTCCATGGAGACCT 59.088 52.381 15.53 0.00 0.00 3.85
2165 5974 1.065126 CCACCTCTTTCCATGGAGACC 60.065 57.143 15.53 0.00 33.80 3.85
2166 5975 1.630878 ACCACCTCTTTCCATGGAGAC 59.369 52.381 15.53 0.00 36.04 3.36
2167 5976 1.909302 GACCACCTCTTTCCATGGAGA 59.091 52.381 15.53 9.98 36.04 3.71
2168 5977 1.912043 AGACCACCTCTTTCCATGGAG 59.088 52.381 15.53 4.43 36.04 3.86
2169 5978 1.909302 GAGACCACCTCTTTCCATGGA 59.091 52.381 11.44 11.44 38.86 3.41
2170 5979 2.409948 GAGACCACCTCTTTCCATGG 57.590 55.000 4.97 4.97 38.86 3.66
2179 5988 3.694566 ACAAACAAAACAGAGACCACCTC 59.305 43.478 0.00 0.00 42.28 3.85
2180 5989 3.697166 ACAAACAAAACAGAGACCACCT 58.303 40.909 0.00 0.00 0.00 4.00
2181 5990 4.450082 AACAAACAAAACAGAGACCACC 57.550 40.909 0.00 0.00 0.00 4.61
2182 5991 5.709966 AGAAACAAACAAAACAGAGACCAC 58.290 37.500 0.00 0.00 0.00 4.16
2183 5992 5.105917 GGAGAAACAAACAAAACAGAGACCA 60.106 40.000 0.00 0.00 0.00 4.02
2184 5993 5.125578 AGGAGAAACAAACAAAACAGAGACC 59.874 40.000 0.00 0.00 0.00 3.85
2185 5994 6.030228 CAGGAGAAACAAACAAAACAGAGAC 58.970 40.000 0.00 0.00 0.00 3.36
2186 5995 5.393027 GCAGGAGAAACAAACAAAACAGAGA 60.393 40.000 0.00 0.00 0.00 3.10
2187 5996 4.800471 GCAGGAGAAACAAACAAAACAGAG 59.200 41.667 0.00 0.00 0.00 3.35
2188 5997 4.219507 TGCAGGAGAAACAAACAAAACAGA 59.780 37.500 0.00 0.00 0.00 3.41
2189 5998 4.493547 TGCAGGAGAAACAAACAAAACAG 58.506 39.130 0.00 0.00 0.00 3.16
2190 5999 4.527509 TGCAGGAGAAACAAACAAAACA 57.472 36.364 0.00 0.00 0.00 2.83
2191 6000 8.810652 TTATATGCAGGAGAAACAAACAAAAC 57.189 30.769 0.00 0.00 0.00 2.43
2192 6001 9.255304 GTTTATATGCAGGAGAAACAAACAAAA 57.745 29.630 13.79 0.00 31.73 2.44
2193 6002 7.870445 GGTTTATATGCAGGAGAAACAAACAAA 59.130 33.333 18.13 0.00 32.78 2.83
2194 6003 7.014711 TGGTTTATATGCAGGAGAAACAAACAA 59.985 33.333 18.13 1.96 32.78 2.83
2195 6004 6.491745 TGGTTTATATGCAGGAGAAACAAACA 59.508 34.615 18.13 8.51 32.78 2.83
2196 6005 6.919721 TGGTTTATATGCAGGAGAAACAAAC 58.080 36.000 18.13 8.52 32.78 2.93
2197 6006 7.395772 TGATGGTTTATATGCAGGAGAAACAAA 59.604 33.333 18.13 9.75 32.78 2.83
2198 6007 6.889177 TGATGGTTTATATGCAGGAGAAACAA 59.111 34.615 18.13 10.95 32.78 2.83
2199 6008 6.422333 TGATGGTTTATATGCAGGAGAAACA 58.578 36.000 18.13 9.10 32.78 2.83
2200 6009 6.767902 TCTGATGGTTTATATGCAGGAGAAAC 59.232 38.462 11.35 11.35 0.00 2.78
2201 6010 6.899089 TCTGATGGTTTATATGCAGGAGAAA 58.101 36.000 0.00 0.00 0.00 2.52
2202 6011 6.499106 TCTGATGGTTTATATGCAGGAGAA 57.501 37.500 0.00 0.00 0.00 2.87
2203 6012 6.043590 ACATCTGATGGTTTATATGCAGGAGA 59.956 38.462 20.83 0.00 33.60 3.71
2204 6013 6.236409 ACATCTGATGGTTTATATGCAGGAG 58.764 40.000 20.83 0.00 33.60 3.69
2205 6014 6.191657 ACATCTGATGGTTTATATGCAGGA 57.808 37.500 20.83 0.00 33.60 3.86
2206 6015 6.889301 AACATCTGATGGTTTATATGCAGG 57.111 37.500 20.83 0.00 33.60 4.85
2242 6051 4.993705 TCTGTAAATGGGATATGGGGAC 57.006 45.455 0.00 0.00 0.00 4.46
2243 6052 5.014123 GTCATCTGTAAATGGGATATGGGGA 59.986 44.000 0.00 0.00 0.00 4.81
2244 6053 5.222109 TGTCATCTGTAAATGGGATATGGGG 60.222 44.000 0.00 0.00 0.00 4.96
2245 6054 5.879763 TGTCATCTGTAAATGGGATATGGG 58.120 41.667 0.00 0.00 0.00 4.00
2246 6055 8.542926 TCTATGTCATCTGTAAATGGGATATGG 58.457 37.037 0.00 0.00 0.00 2.74
2247 6056 9.376075 GTCTATGTCATCTGTAAATGGGATATG 57.624 37.037 0.00 0.00 0.00 1.78
2248 6057 9.331466 AGTCTATGTCATCTGTAAATGGGATAT 57.669 33.333 0.00 0.00 0.00 1.63
2249 6058 8.588472 CAGTCTATGTCATCTGTAAATGGGATA 58.412 37.037 0.00 0.00 0.00 2.59
2250 6059 7.071698 ACAGTCTATGTCATCTGTAAATGGGAT 59.928 37.037 4.29 0.00 37.75 3.85
2251 6060 6.384015 ACAGTCTATGTCATCTGTAAATGGGA 59.616 38.462 4.29 0.00 37.75 4.37
2252 6061 6.586344 ACAGTCTATGTCATCTGTAAATGGG 58.414 40.000 4.29 0.00 37.75 4.00
2253 6062 7.043125 CGAACAGTCTATGTCATCTGTAAATGG 60.043 40.741 6.18 0.00 43.00 3.16
2254 6063 7.515841 GCGAACAGTCTATGTCATCTGTAAATG 60.516 40.741 6.18 0.43 43.00 2.32
2255 6064 6.477033 GCGAACAGTCTATGTCATCTGTAAAT 59.523 38.462 6.18 0.00 43.00 1.40
2256 6065 5.805486 GCGAACAGTCTATGTCATCTGTAAA 59.195 40.000 6.18 0.00 43.00 2.01
2257 6066 5.125578 AGCGAACAGTCTATGTCATCTGTAA 59.874 40.000 6.18 0.00 43.00 2.41
2258 6067 4.640647 AGCGAACAGTCTATGTCATCTGTA 59.359 41.667 6.18 0.00 43.00 2.74
2259 6068 3.445450 AGCGAACAGTCTATGTCATCTGT 59.555 43.478 0.86 0.86 43.00 3.41
2260 6069 4.039151 AGCGAACAGTCTATGTCATCTG 57.961 45.455 0.00 0.00 43.00 2.90
2261 6070 4.158579 TGAAGCGAACAGTCTATGTCATCT 59.841 41.667 0.00 0.00 43.00 2.90
2262 6071 4.424626 TGAAGCGAACAGTCTATGTCATC 58.575 43.478 0.00 0.00 43.00 2.92
2263 6072 4.456280 TGAAGCGAACAGTCTATGTCAT 57.544 40.909 0.00 0.00 43.00 3.06
2264 6073 3.934457 TGAAGCGAACAGTCTATGTCA 57.066 42.857 0.00 0.00 43.00 3.58
2265 6074 6.037098 AGTAATGAAGCGAACAGTCTATGTC 58.963 40.000 0.00 0.00 43.00 3.06
2266 6075 5.967088 AGTAATGAAGCGAACAGTCTATGT 58.033 37.500 0.00 0.00 46.97 2.29
2267 6076 7.197017 ACTAGTAATGAAGCGAACAGTCTATG 58.803 38.462 0.00 0.00 0.00 2.23
2268 6077 7.336161 ACTAGTAATGAAGCGAACAGTCTAT 57.664 36.000 0.00 0.00 0.00 1.98
2269 6078 6.754702 ACTAGTAATGAAGCGAACAGTCTA 57.245 37.500 0.00 0.00 0.00 2.59
2270 6079 5.646577 ACTAGTAATGAAGCGAACAGTCT 57.353 39.130 0.00 0.00 0.00 3.24
2271 6080 5.862323 TGAACTAGTAATGAAGCGAACAGTC 59.138 40.000 0.00 0.00 0.00 3.51
2272 6081 5.779922 TGAACTAGTAATGAAGCGAACAGT 58.220 37.500 0.00 0.00 0.00 3.55
2273 6082 6.706055 TTGAACTAGTAATGAAGCGAACAG 57.294 37.500 0.00 0.00 0.00 3.16
2274 6083 6.347402 GCTTTGAACTAGTAATGAAGCGAACA 60.347 38.462 13.75 0.00 0.00 3.18
2275 6084 6.016111 GCTTTGAACTAGTAATGAAGCGAAC 58.984 40.000 13.75 0.00 0.00 3.95
2276 6085 5.932303 AGCTTTGAACTAGTAATGAAGCGAA 59.068 36.000 19.01 2.95 41.94 4.70
2277 6086 5.479306 AGCTTTGAACTAGTAATGAAGCGA 58.521 37.500 19.01 0.00 41.94 4.93
2278 6087 5.786401 AGCTTTGAACTAGTAATGAAGCG 57.214 39.130 19.01 0.00 41.94 4.68
2279 6088 7.133891 TGAAGCTTTGAACTAGTAATGAAGC 57.866 36.000 18.16 18.16 38.54 3.86
2280 6089 7.239972 GCTGAAGCTTTGAACTAGTAATGAAG 58.760 38.462 0.00 0.04 38.21 3.02
2281 6090 6.149474 GGCTGAAGCTTTGAACTAGTAATGAA 59.851 38.462 0.00 0.00 41.70 2.57
2282 6091 5.643777 GGCTGAAGCTTTGAACTAGTAATGA 59.356 40.000 0.00 0.00 41.70 2.57
2283 6092 5.645497 AGGCTGAAGCTTTGAACTAGTAATG 59.355 40.000 0.00 0.00 41.70 1.90
2284 6093 5.810095 AGGCTGAAGCTTTGAACTAGTAAT 58.190 37.500 0.00 0.00 41.70 1.89
2285 6094 5.012148 AGAGGCTGAAGCTTTGAACTAGTAA 59.988 40.000 0.00 0.00 41.70 2.24
2286 6095 4.528596 AGAGGCTGAAGCTTTGAACTAGTA 59.471 41.667 0.00 0.00 41.70 1.82
2287 6096 3.326297 AGAGGCTGAAGCTTTGAACTAGT 59.674 43.478 0.00 0.00 41.70 2.57
2288 6097 3.936564 AGAGGCTGAAGCTTTGAACTAG 58.063 45.455 0.00 0.00 41.70 2.57
2289 6098 4.067896 CAAGAGGCTGAAGCTTTGAACTA 58.932 43.478 0.00 0.00 41.70 2.24
2290 6099 2.883386 CAAGAGGCTGAAGCTTTGAACT 59.117 45.455 0.00 0.00 41.70 3.01
2291 6100 2.030451 CCAAGAGGCTGAAGCTTTGAAC 60.030 50.000 0.00 0.00 41.70 3.18
2292 6101 2.158623 TCCAAGAGGCTGAAGCTTTGAA 60.159 45.455 0.00 0.00 41.70 2.69
2293 6102 1.421268 TCCAAGAGGCTGAAGCTTTGA 59.579 47.619 0.00 0.00 41.70 2.69
2294 6103 1.901591 TCCAAGAGGCTGAAGCTTTG 58.098 50.000 0.00 0.00 41.70 2.77
2295 6104 2.895242 ATCCAAGAGGCTGAAGCTTT 57.105 45.000 0.00 0.00 41.70 3.51
2296 6105 2.895242 AATCCAAGAGGCTGAAGCTT 57.105 45.000 0.00 0.00 41.70 3.74
2297 6106 4.516652 AATAATCCAAGAGGCTGAAGCT 57.483 40.909 0.00 0.00 41.70 3.74
2298 6107 4.202090 CCAAATAATCCAAGAGGCTGAAGC 60.202 45.833 0.00 0.00 41.14 3.86
2299 6108 4.952335 ACCAAATAATCCAAGAGGCTGAAG 59.048 41.667 0.00 0.00 33.74 3.02
2300 6109 4.934356 ACCAAATAATCCAAGAGGCTGAA 58.066 39.130 0.00 0.00 33.74 3.02
2301 6110 4.591321 ACCAAATAATCCAAGAGGCTGA 57.409 40.909 0.00 0.00 33.74 4.26
2302 6111 4.706476 TCAACCAAATAATCCAAGAGGCTG 59.294 41.667 0.00 0.00 33.74 4.85
2303 6112 4.934356 TCAACCAAATAATCCAAGAGGCT 58.066 39.130 0.00 0.00 33.74 4.58
2304 6113 4.440663 GCTCAACCAAATAATCCAAGAGGC 60.441 45.833 0.00 0.00 33.74 4.70
2305 6114 4.098501 GGCTCAACCAAATAATCCAAGAGG 59.901 45.833 0.00 0.00 38.86 3.69
2306 6115 4.952335 AGGCTCAACCAAATAATCCAAGAG 59.048 41.667 0.00 0.00 43.14 2.85
2307 6116 4.706476 CAGGCTCAACCAAATAATCCAAGA 59.294 41.667 0.00 0.00 43.14 3.02
2308 6117 4.706476 TCAGGCTCAACCAAATAATCCAAG 59.294 41.667 0.00 0.00 43.14 3.61
2309 6118 4.462483 GTCAGGCTCAACCAAATAATCCAA 59.538 41.667 0.00 0.00 43.14 3.53
2310 6119 4.016444 GTCAGGCTCAACCAAATAATCCA 58.984 43.478 0.00 0.00 43.14 3.41
2311 6120 3.381590 GGTCAGGCTCAACCAAATAATCC 59.618 47.826 10.09 0.00 43.14 3.01
2312 6121 4.016444 TGGTCAGGCTCAACCAAATAATC 58.984 43.478 14.36 0.00 42.48 1.75
2313 6122 4.046286 TGGTCAGGCTCAACCAAATAAT 57.954 40.909 14.36 0.00 42.48 1.28
2314 6123 3.517296 TGGTCAGGCTCAACCAAATAA 57.483 42.857 14.36 0.00 42.48 1.40
2320 6129 1.168714 GACAATGGTCAGGCTCAACC 58.831 55.000 8.37 8.37 43.73 3.77
2321 6130 0.798776 CGACAATGGTCAGGCTCAAC 59.201 55.000 0.13 0.00 44.54 3.18
2322 6131 0.684535 TCGACAATGGTCAGGCTCAA 59.315 50.000 0.13 0.00 44.54 3.02
2323 6132 0.684535 TTCGACAATGGTCAGGCTCA 59.315 50.000 0.13 0.00 44.54 4.26
2324 6133 2.029838 ATTCGACAATGGTCAGGCTC 57.970 50.000 0.13 0.00 44.54 4.70
2325 6134 2.086869 CAATTCGACAATGGTCAGGCT 58.913 47.619 0.13 0.00 44.54 4.58
2326 6135 1.812571 ACAATTCGACAATGGTCAGGC 59.187 47.619 0.13 0.00 44.54 4.85
2327 6136 3.747099 GACAATTCGACAATGGTCAGG 57.253 47.619 0.13 0.00 41.24 3.86
2338 6147 2.480073 GGGATACGGTTCGACAATTCGA 60.480 50.000 0.00 0.00 46.37 3.71
2339 6148 1.856597 GGGATACGGTTCGACAATTCG 59.143 52.381 0.00 0.00 42.42 3.34
2340 6149 2.207590 GGGGATACGGTTCGACAATTC 58.792 52.381 0.00 0.00 37.60 2.17
2341 6150 1.134310 GGGGGATACGGTTCGACAATT 60.134 52.381 0.00 0.00 37.60 2.32
2342 6151 0.466963 GGGGGATACGGTTCGACAAT 59.533 55.000 0.00 0.00 37.60 2.71
2343 6152 1.899617 GGGGGATACGGTTCGACAA 59.100 57.895 0.00 0.00 37.60 3.18
2344 6153 3.619938 GGGGGATACGGTTCGACA 58.380 61.111 0.00 0.00 37.60 4.35
2358 6167 2.297701 CACGATCATTACCAAAGGGGG 58.702 52.381 0.00 0.00 42.91 5.40
2359 6168 1.676006 GCACGATCATTACCAAAGGGG 59.324 52.381 0.00 0.00 44.81 4.79
2360 6169 2.643551 AGCACGATCATTACCAAAGGG 58.356 47.619 0.00 0.00 41.29 3.95
2361 6170 4.442706 ACTAGCACGATCATTACCAAAGG 58.557 43.478 0.00 0.00 0.00 3.11
2362 6171 5.351465 ACAACTAGCACGATCATTACCAAAG 59.649 40.000 0.00 0.00 0.00 2.77
2363 6172 5.121611 CACAACTAGCACGATCATTACCAAA 59.878 40.000 0.00 0.00 0.00 3.28
2364 6173 4.629634 CACAACTAGCACGATCATTACCAA 59.370 41.667 0.00 0.00 0.00 3.67
2365 6174 4.180817 CACAACTAGCACGATCATTACCA 58.819 43.478 0.00 0.00 0.00 3.25
2366 6175 4.032900 CACACAACTAGCACGATCATTACC 59.967 45.833 0.00 0.00 0.00 2.85
2367 6176 4.492570 GCACACAACTAGCACGATCATTAC 60.493 45.833 0.00 0.00 0.00 1.89
2368 6177 3.616821 GCACACAACTAGCACGATCATTA 59.383 43.478 0.00 0.00 0.00 1.90
2369 6178 2.416547 GCACACAACTAGCACGATCATT 59.583 45.455 0.00 0.00 0.00 2.57
2370 6179 2.002586 GCACACAACTAGCACGATCAT 58.997 47.619 0.00 0.00 0.00 2.45
2371 6180 1.428448 GCACACAACTAGCACGATCA 58.572 50.000 0.00 0.00 0.00 2.92
2372 6181 0.721718 GGCACACAACTAGCACGATC 59.278 55.000 0.00 0.00 0.00 3.69
2373 6182 0.321671 AGGCACACAACTAGCACGAT 59.678 50.000 0.00 0.00 0.00 3.73
2374 6183 0.319555 GAGGCACACAACTAGCACGA 60.320 55.000 0.00 0.00 0.00 4.35
2375 6184 0.319900 AGAGGCACACAACTAGCACG 60.320 55.000 0.00 0.00 0.00 5.34
2376 6185 1.151668 CAGAGGCACACAACTAGCAC 58.848 55.000 0.00 0.00 0.00 4.40
2377 6186 0.603707 GCAGAGGCACACAACTAGCA 60.604 55.000 0.00 0.00 40.72 3.49
2378 6187 0.321122 AGCAGAGGCACACAACTAGC 60.321 55.000 0.00 0.00 44.61 3.42
2379 6188 2.175878 AAGCAGAGGCACACAACTAG 57.824 50.000 0.00 0.00 44.61 2.57
2380 6189 2.638480 AAAGCAGAGGCACACAACTA 57.362 45.000 0.00 0.00 44.61 2.24
2381 6190 2.638480 TAAAGCAGAGGCACACAACT 57.362 45.000 0.00 0.00 44.61 3.16
2382 6191 4.003648 ACTATAAAGCAGAGGCACACAAC 58.996 43.478 0.00 0.00 44.61 3.32
2383 6192 4.286297 ACTATAAAGCAGAGGCACACAA 57.714 40.909 0.00 0.00 44.61 3.33
2384 6193 3.981071 ACTATAAAGCAGAGGCACACA 57.019 42.857 0.00 0.00 44.61 3.72
2385 6194 5.012328 AGTACTATAAAGCAGAGGCACAC 57.988 43.478 0.00 0.00 44.61 3.82
2386 6195 5.892119 ACTAGTACTATAAAGCAGAGGCACA 59.108 40.000 2.33 0.00 44.61 4.57
2387 6196 6.394025 ACTAGTACTATAAAGCAGAGGCAC 57.606 41.667 2.33 0.00 44.61 5.01
2388 6197 9.803507 TTATACTAGTACTATAAAGCAGAGGCA 57.196 33.333 4.31 0.00 44.61 4.75
2420 6229 2.033299 CGGCACTTGGGTAGCAAATATG 59.967 50.000 0.00 0.00 0.00 1.78
2421 6230 2.297701 CGGCACTTGGGTAGCAAATAT 58.702 47.619 0.00 0.00 0.00 1.28
2422 6231 1.003812 ACGGCACTTGGGTAGCAAATA 59.996 47.619 0.00 0.00 0.00 1.40
2423 6232 0.251165 ACGGCACTTGGGTAGCAAAT 60.251 50.000 0.00 0.00 0.00 2.32
2424 6233 0.466555 AACGGCACTTGGGTAGCAAA 60.467 50.000 0.00 0.00 0.00 3.68
2425 6234 1.149627 AACGGCACTTGGGTAGCAA 59.850 52.632 0.00 0.00 0.00 3.91
2426 6235 1.599518 CAACGGCACTTGGGTAGCA 60.600 57.895 0.00 0.00 0.00 3.49
2427 6236 1.599797 ACAACGGCACTTGGGTAGC 60.600 57.895 0.00 0.00 0.00 3.58
2428 6237 1.852067 GCACAACGGCACTTGGGTAG 61.852 60.000 0.00 0.00 0.00 3.18
2429 6238 1.894756 GCACAACGGCACTTGGGTA 60.895 57.895 0.00 0.00 0.00 3.69
2430 6239 3.216292 GCACAACGGCACTTGGGT 61.216 61.111 0.00 0.00 0.00 4.51
2431 6240 3.215568 TGCACAACGGCACTTGGG 61.216 61.111 0.00 0.00 39.25 4.12
2438 6247 2.877691 GGAAGGATGCACAACGGC 59.122 61.111 0.00 0.00 0.00 5.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.