Multiple sequence alignment - TraesCS6B01G059600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G059600 chr6B 100.000 3164 0 0 1 3164 39325141 39328304 0.000000e+00 5843.0
1 TraesCS6B01G059600 chr6B 84.696 1712 211 31 770 2466 54422468 54420793 0.000000e+00 1663.0
2 TraesCS6B01G059600 chr6B 86.144 1429 170 24 770 2177 39310832 39312253 0.000000e+00 1517.0
3 TraesCS6B01G059600 chr6B 83.774 1590 208 31 945 2518 14303238 14304793 0.000000e+00 1461.0
4 TraesCS6B01G059600 chr6B 86.264 1274 154 13 911 2168 14323425 14324693 0.000000e+00 1363.0
5 TraesCS6B01G059600 chr6B 85.045 1217 167 12 965 2172 14311086 14312296 0.000000e+00 1225.0
6 TraesCS6B01G059600 chr6B 84.603 1221 167 17 965 2172 13934121 13932909 0.000000e+00 1194.0
7 TraesCS6B01G059600 chr6B 84.044 1266 168 24 1285 2528 14318227 14319480 0.000000e+00 1188.0
8 TraesCS6B01G059600 chr6B 82.827 1252 194 13 920 2168 54402951 54401718 0.000000e+00 1101.0
9 TraesCS6B01G059600 chr6B 90.950 442 24 7 2726 3164 54420612 54420184 5.880000e-162 580.0
10 TraesCS6B01G059600 chr6B 90.293 443 27 8 2726 3164 14304801 14305231 1.650000e-157 566.0
11 TraesCS6B01G059600 chr6B 93.407 91 6 0 3070 3160 14628142 14628052 5.500000e-28 135.0
12 TraesCS6B01G059600 chr6D 94.374 1333 66 5 1737 3061 24252314 24253645 0.000000e+00 2037.0
13 TraesCS6B01G059600 chr6D 86.759 1231 139 15 947 2168 7424124 7422909 0.000000e+00 1349.0
14 TraesCS6B01G059600 chr6D 97.483 437 8 3 1 436 458942000 458942434 0.000000e+00 743.0
15 TraesCS6B01G059600 chr6D 97.254 437 9 3 1 436 108484560 108484126 0.000000e+00 737.0
16 TraesCS6B01G059600 chr6D 97.025 437 10 3 1 436 172736458 172736892 0.000000e+00 732.0
17 TraesCS6B01G059600 chr6D 91.216 444 30 8 2726 3164 7654323 7654762 2.100000e-166 595.0
18 TraesCS6B01G059600 chr6D 90.258 349 26 7 2726 3070 7680293 7680637 1.730000e-122 449.0
19 TraesCS6B01G059600 chr6D 80.593 371 43 13 2811 3164 7652874 7653232 3.130000e-65 259.0
20 TraesCS6B01G059600 chr6D 97.368 114 3 0 3051 3164 24254491 24254604 8.950000e-46 195.0
21 TraesCS6B01G059600 chr6D 95.556 90 2 2 2642 2729 24260530 24260619 3.290000e-30 143.0
22 TraesCS6B01G059600 chr6D 86.408 103 12 2 837 937 7651398 7651500 9.280000e-21 111.0
23 TraesCS6B01G059600 chr6D 91.803 61 4 1 3105 3164 7680638 7680698 2.020000e-12 84.2
24 TraesCS6B01G059600 chr4A 88.135 1576 168 9 965 2530 667380012 667381578 0.000000e+00 1857.0
25 TraesCS6B01G059600 chr4A 83.320 1265 174 28 943 2179 667425268 667426523 0.000000e+00 1133.0
26 TraesCS6B01G059600 chr4A 89.616 443 32 7 2726 3164 667381570 667382002 4.610000e-153 551.0
27 TraesCS6B01G059600 chr4A 81.034 464 52 20 2723 3162 667426824 667427275 1.410000e-88 337.0
28 TraesCS6B01G059600 chr6A 85.901 1603 187 15 943 2530 12420332 12421910 0.000000e+00 1672.0
29 TraesCS6B01G059600 chr6A 91.648 443 30 5 2726 3164 12421902 12422341 9.710000e-170 606.0
30 TraesCS6B01G059600 chr6A 80.260 461 57 16 2723 3164 7979250 7979695 1.830000e-82 316.0
31 TraesCS6B01G059600 chr3B 82.878 1209 181 16 971 2172 761047766 761046577 0.000000e+00 1062.0
32 TraesCS6B01G059600 chr3B 97.254 437 9 3 1 436 92297380 92297814 0.000000e+00 737.0
33 TraesCS6B01G059600 chr1B 97.483 437 8 3 1 436 461439473 461439039 0.000000e+00 743.0
34 TraesCS6B01G059600 chr7A 97.254 437 9 3 1 436 563522746 563523180 0.000000e+00 737.0
35 TraesCS6B01G059600 chr3A 97.254 437 9 3 1 436 495105408 495105842 0.000000e+00 737.0
36 TraesCS6B01G059600 chr2B 97.032 438 10 3 1 437 234503064 234503499 0.000000e+00 734.0
37 TraesCS6B01G059600 chr4D 97.025 437 10 3 1 436 123449634 123450068 0.000000e+00 732.0
38 TraesCS6B01G059600 chr7B 90.204 245 22 2 2920 3164 639999346 639999588 5.090000e-83 318.0
39 TraesCS6B01G059600 chr7B 87.417 151 17 2 1984 2133 513480020 513479871 4.200000e-39 172.0
40 TraesCS6B01G059600 chr7B 86.093 151 19 2 1984 2133 558347474 558347623 9.080000e-36 161.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G059600 chr6B 39325141 39328304 3163 False 5843.000000 5843 100.000000 1 3164 1 chr6B.!!$F3 3163
1 TraesCS6B01G059600 chr6B 39310832 39312253 1421 False 1517.000000 1517 86.144000 770 2177 1 chr6B.!!$F2 1407
2 TraesCS6B01G059600 chr6B 14318227 14324693 6466 False 1275.500000 1363 85.154000 911 2528 2 chr6B.!!$F5 1617
3 TraesCS6B01G059600 chr6B 14311086 14312296 1210 False 1225.000000 1225 85.045000 965 2172 1 chr6B.!!$F1 1207
4 TraesCS6B01G059600 chr6B 13932909 13934121 1212 True 1194.000000 1194 84.603000 965 2172 1 chr6B.!!$R1 1207
5 TraesCS6B01G059600 chr6B 54420184 54422468 2284 True 1121.500000 1663 87.823000 770 3164 2 chr6B.!!$R4 2394
6 TraesCS6B01G059600 chr6B 54401718 54402951 1233 True 1101.000000 1101 82.827000 920 2168 1 chr6B.!!$R3 1248
7 TraesCS6B01G059600 chr6B 14303238 14305231 1993 False 1013.500000 1461 87.033500 945 3164 2 chr6B.!!$F4 2219
8 TraesCS6B01G059600 chr6D 7422909 7424124 1215 True 1349.000000 1349 86.759000 947 2168 1 chr6D.!!$R1 1221
9 TraesCS6B01G059600 chr6D 24252314 24254604 2290 False 1116.000000 2037 95.871000 1737 3164 2 chr6D.!!$F6 1427
10 TraesCS6B01G059600 chr6D 7651398 7654762 3364 False 321.666667 595 86.072333 837 3164 3 chr6D.!!$F4 2327
11 TraesCS6B01G059600 chr4A 667380012 667382002 1990 False 1204.000000 1857 88.875500 965 3164 2 chr4A.!!$F1 2199
12 TraesCS6B01G059600 chr4A 667425268 667427275 2007 False 735.000000 1133 82.177000 943 3162 2 chr4A.!!$F2 2219
13 TraesCS6B01G059600 chr6A 12420332 12422341 2009 False 1139.000000 1672 88.774500 943 3164 2 chr6A.!!$F2 2221
14 TraesCS6B01G059600 chr3B 761046577 761047766 1189 True 1062.000000 1062 82.878000 971 2172 1 chr3B.!!$R1 1201

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
45 46 0.035458 CCATTCCATCCCTACCGAGC 59.965 60.0 0.0 0.0 0.0 5.03 F
1716 6060 0.034186 CTGGGATGTTTAGGCAGGCA 60.034 55.0 0.0 0.0 0.0 4.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1883 6227 0.328258 TTCCAAGCCCACCTTAGAGC 59.672 55.000 0.0 0.0 31.0 4.09 R
2582 8338 3.579709 AGTGTCATCAACTAACAGAGCG 58.420 45.455 0.0 0.0 0.0 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 5.248248 TCATCCTTGACTTGACTATTGACCA 59.752 40.000 0.00 0.00 0.00 4.02
30 31 6.126863 TCCTTGACTTGACTATTGACCATT 57.873 37.500 0.00 0.00 0.00 3.16
31 32 6.173339 TCCTTGACTTGACTATTGACCATTC 58.827 40.000 0.00 0.00 0.00 2.67
32 33 5.355350 CCTTGACTTGACTATTGACCATTCC 59.645 44.000 0.00 0.00 0.00 3.01
33 34 5.497464 TGACTTGACTATTGACCATTCCA 57.503 39.130 0.00 0.00 0.00 3.53
34 35 6.065976 TGACTTGACTATTGACCATTCCAT 57.934 37.500 0.00 0.00 0.00 3.41
37 38 4.437682 TGACTATTGACCATTCCATCCC 57.562 45.455 0.00 0.00 0.00 3.85
38 39 4.047166 TGACTATTGACCATTCCATCCCT 58.953 43.478 0.00 0.00 0.00 4.20
39 40 5.223655 TGACTATTGACCATTCCATCCCTA 58.776 41.667 0.00 0.00 0.00 3.53
40 41 5.071788 TGACTATTGACCATTCCATCCCTAC 59.928 44.000 0.00 0.00 0.00 3.18
41 42 3.884037 ATTGACCATTCCATCCCTACC 57.116 47.619 0.00 0.00 0.00 3.18
43 44 1.343580 TGACCATTCCATCCCTACCGA 60.344 52.381 0.00 0.00 0.00 4.69
44 45 1.344763 GACCATTCCATCCCTACCGAG 59.655 57.143 0.00 0.00 0.00 4.63
45 46 0.035458 CCATTCCATCCCTACCGAGC 59.965 60.000 0.00 0.00 0.00 5.03
46 47 0.035458 CATTCCATCCCTACCGAGCC 59.965 60.000 0.00 0.00 0.00 4.70
47 48 1.472662 ATTCCATCCCTACCGAGCCG 61.473 60.000 0.00 0.00 0.00 5.52
48 49 4.301027 CCATCCCTACCGAGCCGC 62.301 72.222 0.00 0.00 0.00 6.53
49 50 4.301027 CATCCCTACCGAGCCGCC 62.301 72.222 0.00 0.00 0.00 6.13
50 51 4.853142 ATCCCTACCGAGCCGCCA 62.853 66.667 0.00 0.00 0.00 5.69
54 55 2.202756 CTACCGAGCCGCCACTTC 60.203 66.667 0.00 0.00 0.00 3.01
55 56 4.124351 TACCGAGCCGCCACTTCG 62.124 66.667 0.00 0.00 0.00 3.79
57 58 4.735132 CCGAGCCGCCACTTCGAA 62.735 66.667 0.00 0.00 0.00 3.71
58 59 3.181967 CGAGCCGCCACTTCGAAG 61.182 66.667 23.43 23.43 0.00 3.79
59 60 2.048127 GAGCCGCCACTTCGAAGT 60.048 61.111 24.93 24.93 40.60 3.01
60 61 1.214589 GAGCCGCCACTTCGAAGTA 59.785 57.895 29.28 0.00 37.08 2.24
61 62 0.179108 GAGCCGCCACTTCGAAGTAT 60.179 55.000 29.28 11.86 37.08 2.12
63 64 1.084289 GCCGCCACTTCGAAGTATTT 58.916 50.000 29.28 5.27 37.08 1.40
64 65 2.093869 AGCCGCCACTTCGAAGTATTTA 60.094 45.455 29.28 0.00 37.08 1.40
65 66 2.030091 GCCGCCACTTCGAAGTATTTAC 59.970 50.000 29.28 15.63 37.08 2.01
67 68 3.518590 CGCCACTTCGAAGTATTTACCT 58.481 45.455 29.28 2.49 37.08 3.08
71 72 4.567159 CCACTTCGAAGTATTTACCTCTGC 59.433 45.833 29.28 0.00 37.08 4.26
72 73 4.567159 CACTTCGAAGTATTTACCTCTGCC 59.433 45.833 29.28 0.00 37.08 4.85
73 74 4.466726 ACTTCGAAGTATTTACCTCTGCCT 59.533 41.667 28.80 0.00 37.52 4.75
75 76 5.416271 TCGAAGTATTTACCTCTGCCTTT 57.584 39.130 0.00 0.00 0.00 3.11
76 77 5.416947 TCGAAGTATTTACCTCTGCCTTTC 58.583 41.667 0.00 0.00 0.00 2.62
77 78 5.187186 TCGAAGTATTTACCTCTGCCTTTCT 59.813 40.000 0.00 0.00 0.00 2.52
78 79 5.875359 CGAAGTATTTACCTCTGCCTTTCTT 59.125 40.000 0.00 0.00 0.00 2.52
79 80 6.371825 CGAAGTATTTACCTCTGCCTTTCTTT 59.628 38.462 0.00 0.00 0.00 2.52
80 81 7.094762 CGAAGTATTTACCTCTGCCTTTCTTTT 60.095 37.037 0.00 0.00 0.00 2.27
81 82 8.478775 AAGTATTTACCTCTGCCTTTCTTTTT 57.521 30.769 0.00 0.00 0.00 1.94
103 104 7.831691 TTTTGAGAACATACCCTTCAATCAA 57.168 32.000 0.00 0.00 0.00 2.57
104 105 7.831691 TTTGAGAACATACCCTTCAATCAAA 57.168 32.000 0.00 0.00 33.20 2.69
106 107 7.831691 TGAGAACATACCCTTCAATCAAAAA 57.168 32.000 0.00 0.00 0.00 1.94
108 109 7.723616 TGAGAACATACCCTTCAATCAAAAAGA 59.276 33.333 0.00 0.00 0.00 2.52
109 110 8.477419 AGAACATACCCTTCAATCAAAAAGAA 57.523 30.769 0.00 0.00 0.00 2.52
110 111 8.923270 AGAACATACCCTTCAATCAAAAAGAAA 58.077 29.630 0.00 0.00 0.00 2.52
111 112 9.541143 GAACATACCCTTCAATCAAAAAGAAAA 57.459 29.630 0.00 0.00 0.00 2.29
112 113 9.898152 AACATACCCTTCAATCAAAAAGAAAAA 57.102 25.926 0.00 0.00 0.00 1.94
133 134 7.812309 AAAAACAAGAAAGAAAAGTTCCTCG 57.188 32.000 0.00 0.00 0.00 4.63
134 135 6.510879 AAACAAGAAAGAAAAGTTCCTCGT 57.489 33.333 0.00 0.00 0.00 4.18
135 136 5.736486 ACAAGAAAGAAAAGTTCCTCGTC 57.264 39.130 0.00 0.00 0.00 4.20
137 138 6.579865 ACAAGAAAGAAAAGTTCCTCGTCTA 58.420 36.000 0.00 0.00 0.00 2.59
138 139 7.217906 ACAAGAAAGAAAAGTTCCTCGTCTAT 58.782 34.615 0.00 0.00 0.00 1.98
140 141 6.994221 AGAAAGAAAAGTTCCTCGTCTATGA 58.006 36.000 0.00 0.00 0.00 2.15
141 142 7.616313 AGAAAGAAAAGTTCCTCGTCTATGAT 58.384 34.615 0.00 0.00 0.00 2.45
142 143 8.097662 AGAAAGAAAAGTTCCTCGTCTATGATT 58.902 33.333 0.00 0.00 0.00 2.57
143 144 8.622948 AAAGAAAAGTTCCTCGTCTATGATTT 57.377 30.769 0.00 0.00 0.00 2.17
145 146 9.720769 AAGAAAAGTTCCTCGTCTATGATTTAA 57.279 29.630 0.00 0.00 0.00 1.52
146 147 9.892130 AGAAAAGTTCCTCGTCTATGATTTAAT 57.108 29.630 0.00 0.00 0.00 1.40
148 149 7.932120 AAGTTCCTCGTCTATGATTTAATCG 57.068 36.000 0.23 0.00 0.00 3.34
149 150 6.448006 AGTTCCTCGTCTATGATTTAATCGG 58.552 40.000 0.23 0.00 0.00 4.18
150 151 4.806330 TCCTCGTCTATGATTTAATCGGC 58.194 43.478 0.23 0.00 0.00 5.54
151 152 3.927142 CCTCGTCTATGATTTAATCGGCC 59.073 47.826 0.00 0.00 0.00 6.13
153 154 3.576982 TCGTCTATGATTTAATCGGCCCT 59.423 43.478 0.00 0.00 0.00 5.19
154 155 4.768448 TCGTCTATGATTTAATCGGCCCTA 59.232 41.667 0.00 0.00 0.00 3.53
155 156 5.244402 TCGTCTATGATTTAATCGGCCCTAA 59.756 40.000 0.00 0.00 0.00 2.69
156 157 5.577164 CGTCTATGATTTAATCGGCCCTAAG 59.423 44.000 0.00 0.00 0.00 2.18
157 158 5.875359 GTCTATGATTTAATCGGCCCTAAGG 59.125 44.000 0.00 0.00 0.00 2.69
171 172 3.797451 CCTAAGGGAGTTTACTCGACC 57.203 52.381 3.96 1.20 43.76 4.79
172 173 2.429971 CCTAAGGGAGTTTACTCGACCC 59.570 54.545 3.96 0.00 43.76 4.46
173 174 2.019807 AAGGGAGTTTACTCGACCCA 57.980 50.000 7.67 0.00 43.76 4.51
174 175 2.249309 AGGGAGTTTACTCGACCCAT 57.751 50.000 7.67 0.00 43.76 4.00
177 178 2.027469 GGGAGTTTACTCGACCCATTGT 60.027 50.000 3.96 0.00 43.76 2.71
179 180 3.259902 GAGTTTACTCGACCCATTGTCC 58.740 50.000 0.00 0.00 41.18 4.02
181 182 3.000727 GTTTACTCGACCCATTGTCCAG 58.999 50.000 0.00 0.00 41.18 3.86
182 183 1.933021 TACTCGACCCATTGTCCAGT 58.067 50.000 0.00 0.00 45.75 4.00
183 184 0.608640 ACTCGACCCATTGTCCAGTC 59.391 55.000 0.00 0.00 40.90 3.51
186 187 0.108138 CGACCCATTGTCCAGTCTCC 60.108 60.000 0.00 0.00 41.18 3.71
187 188 0.253327 GACCCATTGTCCAGTCTCCC 59.747 60.000 0.00 0.00 38.09 4.30
188 189 1.221840 CCCATTGTCCAGTCTCCCG 59.778 63.158 0.00 0.00 0.00 5.14
189 190 1.450312 CCATTGTCCAGTCTCCCGC 60.450 63.158 0.00 0.00 0.00 6.13
190 191 1.296392 CATTGTCCAGTCTCCCGCA 59.704 57.895 0.00 0.00 0.00 5.69
192 193 1.194781 ATTGTCCAGTCTCCCGCACT 61.195 55.000 0.00 0.00 0.00 4.40
193 194 2.099652 TTGTCCAGTCTCCCGCACTG 62.100 60.000 0.00 0.00 40.96 3.66
195 196 3.699894 CCAGTCTCCCGCACTGCT 61.700 66.667 0.00 0.00 40.10 4.24
196 197 2.125753 CAGTCTCCCGCACTGCTC 60.126 66.667 0.00 0.00 35.15 4.26
197 198 2.601666 AGTCTCCCGCACTGCTCA 60.602 61.111 0.00 0.00 0.00 4.26
199 200 1.739562 GTCTCCCGCACTGCTCAAG 60.740 63.158 0.00 0.00 0.00 3.02
200 201 2.210013 TCTCCCGCACTGCTCAAGT 61.210 57.895 0.00 0.00 40.93 3.16
208 209 1.443407 ACTGCTCAAGTGTGCGACT 59.557 52.632 0.00 0.00 37.88 4.18
209 210 0.598680 ACTGCTCAAGTGTGCGACTC 60.599 55.000 0.00 0.00 37.88 3.36
211 212 2.375766 GCTCAAGTGTGCGACTCCG 61.376 63.158 0.00 0.00 31.73 4.63
212 213 1.007271 CTCAAGTGTGCGACTCCGT 60.007 57.895 0.00 0.00 38.24 4.69
213 214 0.240145 CTCAAGTGTGCGACTCCGTA 59.760 55.000 0.00 0.00 38.24 4.02
215 216 0.992072 CAAGTGTGCGACTCCGTATG 59.008 55.000 0.00 0.00 38.24 2.39
218 219 0.525668 GTGTGCGACTCCGTATGAGG 60.526 60.000 0.00 0.00 46.01 3.86
219 220 0.678684 TGTGCGACTCCGTATGAGGA 60.679 55.000 0.00 0.00 46.01 3.71
220 221 0.248539 GTGCGACTCCGTATGAGGAC 60.249 60.000 0.00 0.00 46.01 3.85
222 223 1.102222 GCGACTCCGTATGAGGACCT 61.102 60.000 0.00 0.00 46.01 3.85
223 224 0.945813 CGACTCCGTATGAGGACCTC 59.054 60.000 15.13 15.13 46.01 3.85
235 236 0.405973 AGGACCTCCTTCCCTTTTGC 59.594 55.000 0.00 0.00 46.09 3.68
236 237 0.405973 GGACCTCCTTCCCTTTTGCT 59.594 55.000 0.00 0.00 0.00 3.91
237 238 1.614583 GGACCTCCTTCCCTTTTGCTC 60.615 57.143 0.00 0.00 0.00 4.26
238 239 1.352687 GACCTCCTTCCCTTTTGCTCT 59.647 52.381 0.00 0.00 0.00 4.09
239 240 1.074566 ACCTCCTTCCCTTTTGCTCTG 59.925 52.381 0.00 0.00 0.00 3.35
240 241 1.172175 CTCCTTCCCTTTTGCTCTGC 58.828 55.000 0.00 0.00 0.00 4.26
242 243 1.253593 CCTTCCCTTTTGCTCTGCCC 61.254 60.000 0.00 0.00 0.00 5.36
243 244 0.540365 CTTCCCTTTTGCTCTGCCCA 60.540 55.000 0.00 0.00 0.00 5.36
244 245 0.827507 TTCCCTTTTGCTCTGCCCAC 60.828 55.000 0.00 0.00 0.00 4.61
245 246 1.228675 CCCTTTTGCTCTGCCCACT 60.229 57.895 0.00 0.00 0.00 4.00
249 250 0.250901 TTTTGCTCTGCCCACTCTCC 60.251 55.000 0.00 0.00 0.00 3.71
250 251 2.454832 TTTGCTCTGCCCACTCTCCG 62.455 60.000 0.00 0.00 0.00 4.63
251 252 3.386237 GCTCTGCCCACTCTCCGT 61.386 66.667 0.00 0.00 0.00 4.69
252 253 2.948720 GCTCTGCCCACTCTCCGTT 61.949 63.158 0.00 0.00 0.00 4.44
254 255 1.533033 TCTGCCCACTCTCCGTTCA 60.533 57.895 0.00 0.00 0.00 3.18
255 256 1.374758 CTGCCCACTCTCCGTTCAC 60.375 63.158 0.00 0.00 0.00 3.18
256 257 2.099652 CTGCCCACTCTCCGTTCACA 62.100 60.000 0.00 0.00 0.00 3.58
257 258 1.668151 GCCCACTCTCCGTTCACAC 60.668 63.158 0.00 0.00 0.00 3.82
269 270 2.834689 CGTTCACACGGTTATCAAAGC 58.165 47.619 0.00 0.00 43.16 3.51
270 271 2.222213 CGTTCACACGGTTATCAAAGCA 59.778 45.455 0.00 0.00 43.16 3.91
271 272 3.664276 CGTTCACACGGTTATCAAAGCAG 60.664 47.826 0.00 0.00 43.16 4.24
272 273 3.394674 TCACACGGTTATCAAAGCAGA 57.605 42.857 0.00 0.00 32.47 4.26
273 274 3.325870 TCACACGGTTATCAAAGCAGAG 58.674 45.455 0.00 0.00 32.47 3.35
274 275 2.416547 CACACGGTTATCAAAGCAGAGG 59.583 50.000 0.00 0.00 32.47 3.69
275 276 2.301870 ACACGGTTATCAAAGCAGAGGA 59.698 45.455 0.00 0.00 32.47 3.71
276 277 3.244422 ACACGGTTATCAAAGCAGAGGAA 60.244 43.478 0.00 0.00 32.47 3.36
277 278 3.372206 CACGGTTATCAAAGCAGAGGAAG 59.628 47.826 0.00 0.00 32.47 3.46
278 279 3.260884 ACGGTTATCAAAGCAGAGGAAGA 59.739 43.478 0.00 0.00 32.47 2.87
279 280 3.868077 CGGTTATCAAAGCAGAGGAAGAG 59.132 47.826 0.00 0.00 32.47 2.85
280 281 3.625313 GGTTATCAAAGCAGAGGAAGAGC 59.375 47.826 0.00 0.00 33.20 4.09
282 283 0.036952 TCAAAGCAGAGGAAGAGCGG 60.037 55.000 0.00 0.00 0.00 5.52
284 285 2.811542 AAAGCAGAGGAAGAGCGGGC 62.812 60.000 0.00 0.00 0.00 6.13
285 286 4.087892 GCAGAGGAAGAGCGGGCA 62.088 66.667 0.00 0.00 0.00 5.36
286 287 2.186384 CAGAGGAAGAGCGGGCAG 59.814 66.667 0.00 0.00 0.00 4.85
298 299 3.702048 GGGCAGCAGGTACCACGA 61.702 66.667 15.94 0.00 0.00 4.35
299 300 2.125512 GGCAGCAGGTACCACGAG 60.126 66.667 15.94 2.24 0.00 4.18
300 301 2.815647 GCAGCAGGTACCACGAGC 60.816 66.667 15.94 12.26 0.00 5.03
302 303 3.391382 AGCAGGTACCACGAGCCC 61.391 66.667 15.94 0.00 0.00 5.19
304 305 2.893398 CAGGTACCACGAGCCCTC 59.107 66.667 15.94 0.00 0.00 4.30
307 308 1.982938 GGTACCACGAGCCCTCTGT 60.983 63.158 7.15 0.00 0.00 3.41
308 309 1.511768 GTACCACGAGCCCTCTGTC 59.488 63.158 0.00 0.00 0.00 3.51
309 310 1.681327 TACCACGAGCCCTCTGTCC 60.681 63.158 0.00 0.00 0.00 4.02
310 311 3.775654 CCACGAGCCCTCTGTCCC 61.776 72.222 0.00 0.00 0.00 4.46
311 312 2.997315 CACGAGCCCTCTGTCCCA 60.997 66.667 0.00 0.00 0.00 4.37
312 313 2.997897 ACGAGCCCTCTGTCCCAC 60.998 66.667 0.00 0.00 0.00 4.61
313 314 2.997315 CGAGCCCTCTGTCCCACA 60.997 66.667 0.00 0.00 0.00 4.17
316 317 1.539869 AGCCCTCTGTCCCACACAT 60.540 57.895 0.00 0.00 33.23 3.21
317 318 1.078143 GCCCTCTGTCCCACACATC 60.078 63.158 0.00 0.00 33.23 3.06
318 319 1.557269 GCCCTCTGTCCCACACATCT 61.557 60.000 0.00 0.00 33.23 2.90
319 320 1.866015 CCCTCTGTCCCACACATCTA 58.134 55.000 0.00 0.00 33.23 1.98
320 321 2.402564 CCCTCTGTCCCACACATCTAT 58.597 52.381 0.00 0.00 33.23 1.98
322 323 3.033909 CCTCTGTCCCACACATCTATCA 58.966 50.000 0.00 0.00 33.23 2.15
323 324 3.452264 CCTCTGTCCCACACATCTATCAA 59.548 47.826 0.00 0.00 33.23 2.57
324 325 4.442612 CCTCTGTCCCACACATCTATCAAG 60.443 50.000 0.00 0.00 33.23 3.02
325 326 4.352893 TCTGTCCCACACATCTATCAAGA 58.647 43.478 0.00 0.00 33.23 3.02
326 327 4.777366 TCTGTCCCACACATCTATCAAGAA 59.223 41.667 0.00 0.00 34.73 2.52
327 328 5.089970 TGTCCCACACATCTATCAAGAAG 57.910 43.478 0.00 0.00 34.73 2.85
328 329 3.873952 GTCCCACACATCTATCAAGAAGC 59.126 47.826 0.00 0.00 34.73 3.86
329 330 3.519107 TCCCACACATCTATCAAGAAGCA 59.481 43.478 0.00 0.00 34.73 3.91
330 331 4.019411 TCCCACACATCTATCAAGAAGCAA 60.019 41.667 0.00 0.00 34.73 3.91
331 332 4.334759 CCCACACATCTATCAAGAAGCAAG 59.665 45.833 0.00 0.00 34.73 4.01
332 333 4.940046 CCACACATCTATCAAGAAGCAAGT 59.060 41.667 0.00 0.00 34.73 3.16
333 334 5.163784 CCACACATCTATCAAGAAGCAAGTG 60.164 44.000 0.00 0.00 34.73 3.16
334 335 5.410746 CACACATCTATCAAGAAGCAAGTGT 59.589 40.000 0.00 0.00 34.73 3.55
336 337 6.815641 ACACATCTATCAAGAAGCAAGTGTAG 59.184 38.462 0.00 0.00 34.73 2.74
338 339 7.332926 CACATCTATCAAGAAGCAAGTGTAGTT 59.667 37.037 0.00 0.00 34.73 2.24
339 340 7.547370 ACATCTATCAAGAAGCAAGTGTAGTTC 59.453 37.037 0.00 0.00 34.73 3.01
340 341 6.993079 TCTATCAAGAAGCAAGTGTAGTTCA 58.007 36.000 0.00 0.00 0.00 3.18
341 342 5.931441 ATCAAGAAGCAAGTGTAGTTCAC 57.069 39.130 0.00 0.00 46.46 3.18
349 350 3.993382 GTGTAGTTCACCGGTTCCA 57.007 52.632 2.97 0.00 40.84 3.53
351 352 0.393820 TGTAGTTCACCGGTTCCACC 59.606 55.000 2.97 0.00 34.05 4.61
360 361 3.905249 GGTTCCACCGAATGCTCC 58.095 61.111 0.00 0.00 0.00 4.70
361 362 1.299976 GGTTCCACCGAATGCTCCT 59.700 57.895 0.00 0.00 0.00 3.69
362 363 0.539986 GGTTCCACCGAATGCTCCTA 59.460 55.000 0.00 0.00 0.00 2.94
363 364 1.141053 GGTTCCACCGAATGCTCCTAT 59.859 52.381 0.00 0.00 0.00 2.57
364 365 2.484889 GTTCCACCGAATGCTCCTATC 58.515 52.381 0.00 0.00 0.00 2.08
365 366 2.088104 TCCACCGAATGCTCCTATCT 57.912 50.000 0.00 0.00 0.00 1.98
368 369 2.029470 CCACCGAATGCTCCTATCTCTC 60.029 54.545 0.00 0.00 0.00 3.20
370 371 1.201181 CCGAATGCTCCTATCTCTCGG 59.799 57.143 0.00 0.00 38.49 4.63
371 372 1.402194 CGAATGCTCCTATCTCTCGGC 60.402 57.143 0.00 0.00 0.00 5.54
373 374 1.709578 ATGCTCCTATCTCTCGGCAA 58.290 50.000 0.00 0.00 33.44 4.52
374 375 1.485124 TGCTCCTATCTCTCGGCAAA 58.515 50.000 0.00 0.00 0.00 3.68
376 377 1.683917 GCTCCTATCTCTCGGCAAAGA 59.316 52.381 0.00 0.00 0.00 2.52
378 379 3.613910 GCTCCTATCTCTCGGCAAAGATC 60.614 52.174 0.00 0.00 34.21 2.75
379 380 2.554462 TCCTATCTCTCGGCAAAGATCG 59.446 50.000 0.00 0.00 34.21 3.69
380 381 2.294791 CCTATCTCTCGGCAAAGATCGT 59.705 50.000 0.00 0.00 34.21 3.73
381 382 2.215907 ATCTCTCGGCAAAGATCGTG 57.784 50.000 0.00 0.00 0.00 4.35
382 383 0.888619 TCTCTCGGCAAAGATCGTGT 59.111 50.000 2.03 0.00 0.00 4.49
383 384 0.994995 CTCTCGGCAAAGATCGTGTG 59.005 55.000 2.03 0.00 0.00 3.82
384 385 0.601057 TCTCGGCAAAGATCGTGTGA 59.399 50.000 2.03 0.73 0.00 3.58
385 386 0.994995 CTCGGCAAAGATCGTGTGAG 59.005 55.000 2.03 5.72 0.00 3.51
386 387 0.317160 TCGGCAAAGATCGTGTGAGT 59.683 50.000 2.03 0.00 0.00 3.41
388 389 1.512926 GGCAAAGATCGTGTGAGTGT 58.487 50.000 2.03 0.00 0.00 3.55
389 390 1.195448 GGCAAAGATCGTGTGAGTGTG 59.805 52.381 2.03 0.00 0.00 3.82
390 391 1.398960 GCAAAGATCGTGTGAGTGTGC 60.399 52.381 2.03 0.00 0.00 4.57
391 392 1.866601 CAAAGATCGTGTGAGTGTGCA 59.133 47.619 0.00 0.00 0.00 4.57
392 393 1.788258 AAGATCGTGTGAGTGTGCAG 58.212 50.000 0.00 0.00 0.00 4.41
393 394 0.676184 AGATCGTGTGAGTGTGCAGT 59.324 50.000 0.00 0.00 0.00 4.40
396 397 2.812358 TCGTGTGAGTGTGCAGTTAT 57.188 45.000 0.00 0.00 0.00 1.89
408 409 3.768633 CAGTTATGCTTCGGAGGCT 57.231 52.632 13.48 0.00 0.00 4.58
409 410 2.029838 CAGTTATGCTTCGGAGGCTT 57.970 50.000 13.48 9.48 0.00 4.35
410 411 1.936547 CAGTTATGCTTCGGAGGCTTC 59.063 52.381 13.48 0.00 0.00 3.86
411 412 1.555075 AGTTATGCTTCGGAGGCTTCA 59.445 47.619 13.48 0.00 0.00 3.02
413 414 0.178068 TATGCTTCGGAGGCTTCACC 59.822 55.000 13.48 0.00 39.61 4.02
414 415 1.841302 ATGCTTCGGAGGCTTCACCA 61.841 55.000 13.48 0.00 43.14 4.17
415 416 1.078143 GCTTCGGAGGCTTCACCAT 60.078 57.895 4.68 0.00 43.14 3.55
417 418 0.745845 CTTCGGAGGCTTCACCATGG 60.746 60.000 11.19 11.19 43.14 3.66
418 419 1.198094 TTCGGAGGCTTCACCATGGA 61.198 55.000 21.47 0.00 43.14 3.41
419 420 1.198094 TCGGAGGCTTCACCATGGAA 61.198 55.000 21.47 1.53 43.14 3.53
421 422 1.140852 CGGAGGCTTCACCATGGAATA 59.859 52.381 21.47 0.00 43.14 1.75
422 423 2.808202 CGGAGGCTTCACCATGGAATAG 60.808 54.545 21.47 12.62 43.14 1.73
424 425 3.073650 GGAGGCTTCACCATGGAATAGAT 59.926 47.826 21.47 4.43 43.14 1.98
425 426 4.322567 GAGGCTTCACCATGGAATAGATC 58.677 47.826 21.47 9.52 43.14 2.75
426 427 3.070018 GGCTTCACCATGGAATAGATCG 58.930 50.000 21.47 6.29 38.86 3.69
428 429 4.564406 GGCTTCACCATGGAATAGATCGAT 60.564 45.833 21.47 0.00 38.86 3.59
429 430 4.999950 GCTTCACCATGGAATAGATCGATT 59.000 41.667 21.47 0.11 0.00 3.34
431 432 5.806654 TCACCATGGAATAGATCGATTCA 57.193 39.130 24.33 13.99 37.53 2.57
432 433 5.787380 TCACCATGGAATAGATCGATTCAG 58.213 41.667 24.33 15.41 37.53 3.02
434 435 5.994054 CACCATGGAATAGATCGATTCAGTT 59.006 40.000 24.33 9.92 37.53 3.16
436 437 5.347093 CCATGGAATAGATCGATTCAGTTCG 59.653 44.000 24.33 11.22 37.53 3.95
439 440 3.944055 ATAGATCGATTCAGTTCGGGG 57.056 47.619 0.00 0.00 39.56 5.73
440 441 0.105039 AGATCGATTCAGTTCGGGGC 59.895 55.000 0.00 0.00 39.56 5.80
441 442 0.880718 GATCGATTCAGTTCGGGGCC 60.881 60.000 0.00 0.00 39.56 5.80
442 443 2.644555 ATCGATTCAGTTCGGGGCCG 62.645 60.000 0.00 0.00 39.56 6.13
443 444 2.513897 GATTCAGTTCGGGGCCGG 60.514 66.667 4.42 4.42 40.25 6.13
444 445 4.109675 ATTCAGTTCGGGGCCGGG 62.110 66.667 11.55 0.00 40.25 5.73
490 491 4.436998 GGCGACACCGTCCAGAGG 62.437 72.222 0.00 0.00 38.24 3.69
491 492 3.371063 GCGACACCGTCCAGAGGA 61.371 66.667 0.00 0.00 38.24 3.71
492 493 2.878429 CGACACCGTCCAGAGGAG 59.122 66.667 0.00 0.00 29.39 3.69
493 494 2.701780 CGACACCGTCCAGAGGAGG 61.702 68.421 0.00 0.00 37.34 4.30
494 495 1.606889 GACACCGTCCAGAGGAGGT 60.607 63.158 5.19 3.79 36.02 3.85
495 496 1.596895 GACACCGTCCAGAGGAGGTC 61.597 65.000 5.19 0.00 36.02 3.85
496 497 1.606601 CACCGTCCAGAGGAGGTCA 60.607 63.158 5.19 0.00 36.02 4.02
498 499 2.055042 CCGTCCAGAGGAGGTCAGG 61.055 68.421 5.19 0.00 36.02 3.86
499 500 2.055042 CGTCCAGAGGAGGTCAGGG 61.055 68.421 0.00 0.00 32.51 4.45
500 501 1.687493 GTCCAGAGGAGGTCAGGGG 60.687 68.421 0.00 0.00 32.51 4.79
502 503 1.231751 TCCAGAGGAGGTCAGGGGAT 61.232 60.000 0.00 0.00 32.51 3.85
503 504 0.762461 CCAGAGGAGGTCAGGGGATC 60.762 65.000 0.00 0.00 0.00 3.36
504 505 1.112315 CAGAGGAGGTCAGGGGATCG 61.112 65.000 0.00 0.00 0.00 3.69
505 506 1.230497 GAGGAGGTCAGGGGATCGA 59.770 63.158 0.00 0.00 0.00 3.59
506 507 0.397254 GAGGAGGTCAGGGGATCGAA 60.397 60.000 0.00 0.00 0.00 3.71
507 508 0.397816 AGGAGGTCAGGGGATCGAAG 60.398 60.000 0.00 0.00 0.00 3.79
508 509 0.397254 GGAGGTCAGGGGATCGAAGA 60.397 60.000 0.00 0.00 45.75 2.87
511 512 0.466124 GGTCAGGGGATCGAAGAAGG 59.534 60.000 0.00 0.00 43.58 3.46
516 517 1.153147 GGGATCGAAGAAGGTGCCC 60.153 63.158 0.00 0.00 43.58 5.36
518 519 0.744771 GGATCGAAGAAGGTGCCCAC 60.745 60.000 0.00 0.00 43.58 4.61
519 520 0.744771 GATCGAAGAAGGTGCCCACC 60.745 60.000 9.42 9.42 46.21 4.61
540 541 2.451990 CGACGACCGCATTGCATGA 61.452 57.895 9.69 0.00 0.00 3.07
542 543 1.634757 GACGACCGCATTGCATGACA 61.635 55.000 9.69 0.00 0.00 3.58
543 544 1.233950 ACGACCGCATTGCATGACAA 61.234 50.000 9.69 0.33 44.01 3.18
544 545 0.109827 CGACCGCATTGCATGACAAA 60.110 50.000 9.69 0.00 42.86 2.83
545 546 1.339711 GACCGCATTGCATGACAAAC 58.660 50.000 9.69 0.00 42.86 2.93
546 547 0.672889 ACCGCATTGCATGACAAACA 59.327 45.000 9.69 0.00 42.86 2.83
548 549 1.602416 CCGCATTGCATGACAAACACA 60.602 47.619 9.69 0.00 42.86 3.72
549 550 2.330286 CGCATTGCATGACAAACACAT 58.670 42.857 9.69 0.00 42.86 3.21
550 551 2.091432 CGCATTGCATGACAAACACATG 59.909 45.455 9.69 0.00 42.86 3.21
554 555 3.404978 CATGACAAACACATGCCCG 57.595 52.632 0.00 0.00 38.58 6.13
556 557 1.269174 CATGACAAACACATGCCCGAA 59.731 47.619 0.00 0.00 38.58 4.30
557 558 0.665835 TGACAAACACATGCCCGAAC 59.334 50.000 0.00 0.00 0.00 3.95
558 559 0.039527 GACAAACACATGCCCGAACC 60.040 55.000 0.00 0.00 0.00 3.62
559 560 0.753479 ACAAACACATGCCCGAACCA 60.753 50.000 0.00 0.00 0.00 3.67
560 561 0.318614 CAAACACATGCCCGAACCAC 60.319 55.000 0.00 0.00 0.00 4.16
561 562 1.791103 AAACACATGCCCGAACCACG 61.791 55.000 0.00 0.00 42.18 4.94
573 574 3.552384 ACCACGCGGTTTGAGGGA 61.552 61.111 12.47 0.00 46.31 4.20
574 575 3.047877 CCACGCGGTTTGAGGGAC 61.048 66.667 12.47 0.00 0.00 4.46
575 576 3.411351 CACGCGGTTTGAGGGACG 61.411 66.667 12.47 0.00 0.00 4.79
576 577 4.675029 ACGCGGTTTGAGGGACGG 62.675 66.667 12.47 0.00 0.00 4.79
579 580 4.675029 CGGTTTGAGGGACGGCGT 62.675 66.667 14.65 14.65 0.00 5.68
580 581 2.281276 GGTTTGAGGGACGGCGTT 60.281 61.111 16.19 0.00 0.00 4.84
581 582 2.613506 GGTTTGAGGGACGGCGTTG 61.614 63.158 16.19 0.00 0.00 4.10
582 583 2.281208 TTTGAGGGACGGCGTTGG 60.281 61.111 16.19 0.00 0.00 3.77
583 584 2.809307 TTTGAGGGACGGCGTTGGA 61.809 57.895 16.19 0.00 0.00 3.53
584 585 2.119484 TTTGAGGGACGGCGTTGGAT 62.119 55.000 16.19 0.00 0.00 3.41
585 586 1.259142 TTGAGGGACGGCGTTGGATA 61.259 55.000 16.19 0.00 0.00 2.59
588 589 2.202974 GGACGGCGTTGGATACCC 60.203 66.667 16.19 4.71 0.00 3.69
589 590 2.202974 GACGGCGTTGGATACCCC 60.203 66.667 16.19 0.00 0.00 4.95
590 591 3.004354 ACGGCGTTGGATACCCCA 61.004 61.111 6.77 0.00 44.93 4.96
598 599 3.662290 TGGATACCCCAACAACTGC 57.338 52.632 0.00 0.00 43.29 4.40
601 602 1.272480 GGATACCCCAACAACTGCCTT 60.272 52.381 0.00 0.00 34.14 4.35
603 604 2.463047 TACCCCAACAACTGCCTTTT 57.537 45.000 0.00 0.00 0.00 2.27
604 605 0.829990 ACCCCAACAACTGCCTTTTG 59.170 50.000 0.00 0.00 0.00 2.44
605 606 1.118838 CCCCAACAACTGCCTTTTGA 58.881 50.000 0.00 0.00 0.00 2.69
606 607 1.693606 CCCCAACAACTGCCTTTTGAT 59.306 47.619 0.00 0.00 0.00 2.57
607 608 2.896685 CCCCAACAACTGCCTTTTGATA 59.103 45.455 0.00 0.00 0.00 2.15
608 609 3.323403 CCCCAACAACTGCCTTTTGATAA 59.677 43.478 0.00 0.00 0.00 1.75
609 610 4.020307 CCCCAACAACTGCCTTTTGATAAT 60.020 41.667 0.00 0.00 0.00 1.28
610 611 5.186797 CCCCAACAACTGCCTTTTGATAATA 59.813 40.000 0.00 0.00 0.00 0.98
611 612 6.099341 CCCAACAACTGCCTTTTGATAATAC 58.901 40.000 0.00 0.00 0.00 1.89
613 614 6.295011 CCAACAACTGCCTTTTGATAATACCA 60.295 38.462 0.00 0.00 0.00 3.25
614 615 6.267496 ACAACTGCCTTTTGATAATACCAC 57.733 37.500 0.00 0.00 0.00 4.16
615 616 5.185056 ACAACTGCCTTTTGATAATACCACC 59.815 40.000 0.00 0.00 0.00 4.61
616 617 4.929479 ACTGCCTTTTGATAATACCACCA 58.071 39.130 0.00 0.00 0.00 4.17
617 618 4.705023 ACTGCCTTTTGATAATACCACCAC 59.295 41.667 0.00 0.00 0.00 4.16
618 619 4.667573 TGCCTTTTGATAATACCACCACA 58.332 39.130 0.00 0.00 0.00 4.17
619 620 4.704540 TGCCTTTTGATAATACCACCACAG 59.295 41.667 0.00 0.00 0.00 3.66
621 622 5.417580 GCCTTTTGATAATACCACCACAGAA 59.582 40.000 0.00 0.00 0.00 3.02
623 624 6.659242 CCTTTTGATAATACCACCACAGAACT 59.341 38.462 0.00 0.00 0.00 3.01
624 625 7.148239 CCTTTTGATAATACCACCACAGAACTC 60.148 40.741 0.00 0.00 0.00 3.01
625 626 5.353394 TGATAATACCACCACAGAACTCC 57.647 43.478 0.00 0.00 0.00 3.85
628 629 1.053424 TACCACCACAGAACTCCCAC 58.947 55.000 0.00 0.00 0.00 4.61
629 630 1.073199 CCACCACAGAACTCCCACC 59.927 63.158 0.00 0.00 0.00 4.61
630 631 1.073199 CACCACAGAACTCCCACCC 59.927 63.158 0.00 0.00 0.00 4.61
631 632 1.073706 ACCACAGAACTCCCACCCT 60.074 57.895 0.00 0.00 0.00 4.34
632 633 0.192566 ACCACAGAACTCCCACCCTA 59.807 55.000 0.00 0.00 0.00 3.53
634 635 1.645710 CACAGAACTCCCACCCTACT 58.354 55.000 0.00 0.00 0.00 2.57
636 637 1.978580 ACAGAACTCCCACCCTACTTG 59.021 52.381 0.00 0.00 0.00 3.16
637 638 1.978580 CAGAACTCCCACCCTACTTGT 59.021 52.381 0.00 0.00 0.00 3.16
638 639 2.028020 CAGAACTCCCACCCTACTTGTC 60.028 54.545 0.00 0.00 0.00 3.18
639 640 0.974383 AACTCCCACCCTACTTGTCG 59.026 55.000 0.00 0.00 0.00 4.35
640 641 0.903454 ACTCCCACCCTACTTGTCGG 60.903 60.000 0.00 0.00 0.00 4.79
641 642 0.903454 CTCCCACCCTACTTGTCGGT 60.903 60.000 0.00 0.00 0.00 4.69
642 643 0.472352 TCCCACCCTACTTGTCGGTT 60.472 55.000 0.00 0.00 0.00 4.44
643 644 0.399075 CCCACCCTACTTGTCGGTTT 59.601 55.000 0.00 0.00 0.00 3.27
645 646 1.877443 CCACCCTACTTGTCGGTTTTG 59.123 52.381 0.00 0.00 0.00 2.44
648 649 2.171027 ACCCTACTTGTCGGTTTTGTGA 59.829 45.455 0.00 0.00 0.00 3.58
649 650 3.207778 CCCTACTTGTCGGTTTTGTGAA 58.792 45.455 0.00 0.00 0.00 3.18
651 652 3.623960 CCTACTTGTCGGTTTTGTGAACA 59.376 43.478 0.00 0.00 0.00 3.18
652 653 4.095185 CCTACTTGTCGGTTTTGTGAACAA 59.905 41.667 0.00 0.00 0.00 2.83
653 654 4.506886 ACTTGTCGGTTTTGTGAACAAA 57.493 36.364 4.52 4.52 43.36 2.83
670 671 9.814899 TGTGAACAAAATTATGAAAGTCATTGT 57.185 25.926 0.00 0.00 38.26 2.71
685 686 9.584839 GAAAGTCATTGTCAAAATAACAAATGC 57.415 29.630 0.00 0.00 39.84 3.56
686 687 8.891671 AAGTCATTGTCAAAATAACAAATGCT 57.108 26.923 0.00 0.00 39.84 3.79
687 688 8.301730 AGTCATTGTCAAAATAACAAATGCTG 57.698 30.769 0.00 0.00 39.84 4.41
689 690 8.763356 GTCATTGTCAAAATAACAAATGCTGAA 58.237 29.630 0.00 0.00 39.84 3.02
690 691 8.763356 TCATTGTCAAAATAACAAATGCTGAAC 58.237 29.630 0.00 0.00 39.84 3.18
691 692 8.549548 CATTGTCAAAATAACAAATGCTGAACA 58.450 29.630 0.00 0.00 39.84 3.18
692 693 8.484641 TTGTCAAAATAACAAATGCTGAACAA 57.515 26.923 0.00 0.00 33.86 2.83
694 695 8.939929 TGTCAAAATAACAAATGCTGAACAAAA 58.060 25.926 0.00 0.00 0.00 2.44
695 696 9.934190 GTCAAAATAACAAATGCTGAACAAAAT 57.066 25.926 0.00 0.00 0.00 1.82
703 704 8.086851 ACAAATGCTGAACAAAATTATGAACC 57.913 30.769 0.00 0.00 0.00 3.62
704 705 6.949578 AATGCTGAACAAAATTATGAACCG 57.050 33.333 0.00 0.00 0.00 4.44
705 706 4.804108 TGCTGAACAAAATTATGAACCGG 58.196 39.130 0.00 0.00 0.00 5.28
707 708 4.857037 GCTGAACAAAATTATGAACCGGAC 59.143 41.667 9.46 1.77 0.00 4.79
708 709 5.335661 GCTGAACAAAATTATGAACCGGACT 60.336 40.000 9.46 0.00 0.00 3.85
709 710 6.642707 TGAACAAAATTATGAACCGGACTT 57.357 33.333 9.46 2.63 0.00 3.01
710 711 7.045126 TGAACAAAATTATGAACCGGACTTT 57.955 32.000 9.46 0.00 0.00 2.66
711 712 7.493367 TGAACAAAATTATGAACCGGACTTTT 58.507 30.769 9.46 0.00 0.00 2.27
712 713 7.436673 TGAACAAAATTATGAACCGGACTTTTG 59.563 33.333 9.46 15.32 37.83 2.44
714 715 7.942990 ACAAAATTATGAACCGGACTTTTGTA 58.057 30.769 9.46 0.00 41.13 2.41
716 717 7.754851 AAATTATGAACCGGACTTTTGTAGT 57.245 32.000 9.46 0.00 40.71 2.73
720 721 3.628487 TGAACCGGACTTTTGTAGTTTGG 59.372 43.478 9.46 0.00 37.17 3.28
722 723 4.420522 ACCGGACTTTTGTAGTTTGGTA 57.579 40.909 9.46 0.00 40.69 3.25
723 724 4.383173 ACCGGACTTTTGTAGTTTGGTAG 58.617 43.478 9.46 0.00 40.69 3.18
726 727 5.510179 CCGGACTTTTGTAGTTTGGTAGAGA 60.510 44.000 0.00 0.00 37.17 3.10
727 728 5.404667 CGGACTTTTGTAGTTTGGTAGAGAC 59.595 44.000 0.00 0.00 37.17 3.36
728 729 5.404667 GGACTTTTGTAGTTTGGTAGAGACG 59.595 44.000 0.00 0.00 37.17 4.18
729 730 4.748600 ACTTTTGTAGTTTGGTAGAGACGC 59.251 41.667 0.00 0.00 31.29 5.19
731 732 4.530710 TTGTAGTTTGGTAGAGACGCAT 57.469 40.909 0.00 0.00 0.00 4.73
733 734 2.279582 AGTTTGGTAGAGACGCATCG 57.720 50.000 0.00 0.00 0.00 3.84
734 735 1.544691 AGTTTGGTAGAGACGCATCGT 59.455 47.619 0.00 0.00 45.10 3.73
735 736 1.654105 GTTTGGTAGAGACGCATCGTG 59.346 52.381 0.00 0.00 41.37 4.35
737 738 0.678684 TGGTAGAGACGCATCGTGGA 60.679 55.000 0.00 0.00 41.37 4.02
739 740 1.335142 GGTAGAGACGCATCGTGGATC 60.335 57.143 0.00 0.00 41.37 3.36
740 741 1.333931 GTAGAGACGCATCGTGGATCA 59.666 52.381 0.00 0.00 41.37 2.92
741 742 0.383590 AGAGACGCATCGTGGATCAG 59.616 55.000 0.00 0.00 41.37 2.90
742 743 0.101399 GAGACGCATCGTGGATCAGT 59.899 55.000 0.00 0.00 41.37 3.41
743 744 1.333931 GAGACGCATCGTGGATCAGTA 59.666 52.381 0.00 0.00 41.37 2.74
744 745 1.065701 AGACGCATCGTGGATCAGTAC 59.934 52.381 0.00 0.00 41.37 2.73
745 746 0.815095 ACGCATCGTGGATCAGTACA 59.185 50.000 0.00 0.00 39.18 2.90
746 747 1.409064 ACGCATCGTGGATCAGTACAT 59.591 47.619 0.00 0.00 39.18 2.29
747 748 2.159099 ACGCATCGTGGATCAGTACATT 60.159 45.455 0.00 0.00 39.18 2.71
748 749 2.219445 CGCATCGTGGATCAGTACATTG 59.781 50.000 0.00 0.00 0.00 2.82
750 751 3.246226 GCATCGTGGATCAGTACATTGTC 59.754 47.826 0.00 0.00 0.00 3.18
751 752 4.432712 CATCGTGGATCAGTACATTGTCA 58.567 43.478 0.00 0.00 0.00 3.58
752 753 4.529109 TCGTGGATCAGTACATTGTCAA 57.471 40.909 0.00 0.00 0.00 3.18
755 756 5.760743 TCGTGGATCAGTACATTGTCAAAAA 59.239 36.000 0.00 0.00 0.00 1.94
776 777 6.499106 AAAAATCTTGGAAGTCATTTGGGT 57.501 33.333 0.00 0.00 0.00 4.51
793 795 1.009829 GGTTCTATGGACGCTGCTTG 58.990 55.000 0.00 0.00 0.00 4.01
795 797 0.250234 TTCTATGGACGCTGCTTGCT 59.750 50.000 0.00 0.00 40.11 3.91
796 798 0.250234 TCTATGGACGCTGCTTGCTT 59.750 50.000 0.00 0.00 40.11 3.91
826 829 2.016318 TGCAGATGGAAATAAGCCGTG 58.984 47.619 0.00 0.00 0.00 4.94
845 848 3.771216 GTGGGATATCATTTGGATGGCT 58.229 45.455 4.83 0.00 36.72 4.75
847 850 3.140707 TGGGATATCATTTGGATGGCTGT 59.859 43.478 4.83 0.00 36.72 4.40
895 899 3.154710 AGTTCATCACACGACTCCACTA 58.845 45.455 0.00 0.00 0.00 2.74
907 911 6.036844 ACACGACTCCACTAAAAGAAAAAGAC 59.963 38.462 0.00 0.00 0.00 3.01
909 913 5.758784 CGACTCCACTAAAAGAAAAAGACCT 59.241 40.000 0.00 0.00 0.00 3.85
910 914 6.073711 CGACTCCACTAAAAGAAAAAGACCTC 60.074 42.308 0.00 0.00 0.00 3.85
911 915 6.659824 ACTCCACTAAAAGAAAAAGACCTCA 58.340 36.000 0.00 0.00 0.00 3.86
913 917 7.445707 ACTCCACTAAAAGAAAAAGACCTCATC 59.554 37.037 0.00 0.00 0.00 2.92
914 918 7.287061 TCCACTAAAAGAAAAAGACCTCATCA 58.713 34.615 0.00 0.00 0.00 3.07
924 5239 2.184322 CCTCATCACACGACCGGG 59.816 66.667 6.32 0.00 0.00 5.73
926 5241 4.077184 TCATCACACGACCGGGGC 62.077 66.667 6.32 0.00 0.00 5.80
957 5272 1.710339 GCTCAACGCCACTCGAATC 59.290 57.895 0.00 0.00 41.67 2.52
958 5273 0.737715 GCTCAACGCCACTCGAATCT 60.738 55.000 0.00 0.00 41.67 2.40
959 5274 1.272781 CTCAACGCCACTCGAATCTC 58.727 55.000 0.00 0.00 41.67 2.75
960 5275 0.108804 TCAACGCCACTCGAATCTCC 60.109 55.000 0.00 0.00 41.67 3.71
963 5278 0.965866 ACGCCACTCGAATCTCCTCA 60.966 55.000 0.00 0.00 41.67 3.86
1063 5397 1.968540 GCACCAGCTCCTTCCACAC 60.969 63.158 0.00 0.00 37.91 3.82
1068 5402 2.936032 GCTCCTTCCACACCCCCT 60.936 66.667 0.00 0.00 0.00 4.79
1128 5465 0.105658 CCATCTCCCCGAACCCTAGA 60.106 60.000 0.00 0.00 0.00 2.43
1221 5558 1.538876 CTCCCACCTCAAGTCCCCA 60.539 63.158 0.00 0.00 0.00 4.96
1362 5699 2.202146 GTCGTCGTCGGTCTCACG 60.202 66.667 1.55 0.00 38.67 4.35
1365 5702 4.112341 GTCGTCGGTCTCACGGGG 62.112 72.222 0.00 0.00 37.85 5.73
1396 5733 1.661509 CCTTCTGATATCGCGCGCA 60.662 57.895 32.61 18.69 0.00 6.09
1434 5772 2.039084 GGGACAATTCCGCCATAGATCT 59.961 50.000 0.00 0.00 43.94 2.75
1611 5955 4.463539 TGTGATATTGCCAAGCTGTTCATT 59.536 37.500 0.00 0.00 0.00 2.57
1627 5971 6.017605 GCTGTTCATTCAAATACCGATGATCT 60.018 38.462 0.00 0.00 0.00 2.75
1666 6010 3.147595 CCCTGGAGATGGTCGCGA 61.148 66.667 3.71 3.71 0.00 5.87
1716 6060 0.034186 CTGGGATGTTTAGGCAGGCA 60.034 55.000 0.00 0.00 0.00 4.75
1785 6129 5.297776 AGTGGAACAGTTGAAGAAGACATTG 59.702 40.000 0.00 0.00 40.27 2.82
1836 6180 0.468226 TGTCCAAGTTGCCGACTCTT 59.532 50.000 11.87 0.00 37.72 2.85
1854 6198 2.963101 TCTTCTGAGACGGTCAAAGGAA 59.037 45.455 11.27 7.99 33.60 3.36
1882 6226 0.108567 GCTCAAGTCCGAGTTCCTCC 60.109 60.000 0.00 0.00 35.33 4.30
1883 6227 0.171455 CTCAAGTCCGAGTTCCTCCG 59.829 60.000 0.00 0.00 0.00 4.63
1923 6267 0.869880 CGGCGTACATTGCTCATCGA 60.870 55.000 0.00 0.00 0.00 3.59
1943 6287 1.553248 ACCCGCTATGCTCACTTACAA 59.447 47.619 0.00 0.00 0.00 2.41
2005 6349 7.508977 TGAGGTTTCTTAAGGAAAATGGATTGT 59.491 33.333 0.00 0.00 44.34 2.71
2029 6373 2.946329 AGTCACGGCAGAGACTACTATG 59.054 50.000 14.63 0.00 44.50 2.23
2294 7100 1.672356 CCCACCTTGCCGAAGACTG 60.672 63.158 0.00 0.00 0.00 3.51
2366 7991 3.512516 GGGCCATGAGAACTGCGC 61.513 66.667 4.39 0.00 0.00 6.09
2582 8338 4.267928 GCTATACCACACGTGATTCTCAAC 59.732 45.833 25.01 1.96 0.00 3.18
2601 8357 3.660501 ACGCTCTGTTAGTTGATGACA 57.339 42.857 0.00 0.00 0.00 3.58
2649 8405 7.407393 AGTACTCCTACTTTTATGACCTGAC 57.593 40.000 0.00 0.00 27.62 3.51
3044 8824 3.505680 TCGTGGGAACAAATCTGGAATTG 59.494 43.478 0.00 0.00 46.06 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 5.248248 TGGTCAATAGTCAAGTCAAGGATGA 59.752 40.000 0.00 0.00 0.00 2.92
5 6 5.491070 TGGTCAATAGTCAAGTCAAGGATG 58.509 41.667 0.00 0.00 0.00 3.51
6 7 5.762179 TGGTCAATAGTCAAGTCAAGGAT 57.238 39.130 0.00 0.00 0.00 3.24
10 11 5.875224 TGGAATGGTCAATAGTCAAGTCAA 58.125 37.500 0.00 0.00 0.00 3.18
11 12 5.497464 TGGAATGGTCAATAGTCAAGTCA 57.503 39.130 0.00 0.00 0.00 3.41
12 13 5.529060 GGATGGAATGGTCAATAGTCAAGTC 59.471 44.000 0.00 0.00 0.00 3.01
14 15 4.823989 GGGATGGAATGGTCAATAGTCAAG 59.176 45.833 0.00 0.00 0.00 3.02
15 16 4.478317 AGGGATGGAATGGTCAATAGTCAA 59.522 41.667 0.00 0.00 0.00 3.18
16 17 4.047166 AGGGATGGAATGGTCAATAGTCA 58.953 43.478 0.00 0.00 0.00 3.41
17 18 4.713792 AGGGATGGAATGGTCAATAGTC 57.286 45.455 0.00 0.00 0.00 2.59
18 19 4.351111 GGTAGGGATGGAATGGTCAATAGT 59.649 45.833 0.00 0.00 0.00 2.12
20 21 3.326588 CGGTAGGGATGGAATGGTCAATA 59.673 47.826 0.00 0.00 0.00 1.90
21 22 2.106511 CGGTAGGGATGGAATGGTCAAT 59.893 50.000 0.00 0.00 0.00 2.57
22 23 1.488812 CGGTAGGGATGGAATGGTCAA 59.511 52.381 0.00 0.00 0.00 3.18
23 24 1.128200 CGGTAGGGATGGAATGGTCA 58.872 55.000 0.00 0.00 0.00 4.02
25 26 1.424638 CTCGGTAGGGATGGAATGGT 58.575 55.000 0.00 0.00 0.00 3.55
26 27 0.035458 GCTCGGTAGGGATGGAATGG 59.965 60.000 0.00 0.00 0.00 3.16
28 29 1.472662 CGGCTCGGTAGGGATGGAAT 61.473 60.000 0.00 0.00 0.00 3.01
30 31 2.520982 CGGCTCGGTAGGGATGGA 60.521 66.667 0.00 0.00 0.00 3.41
31 32 4.301027 GCGGCTCGGTAGGGATGG 62.301 72.222 0.00 0.00 0.00 3.51
32 33 4.301027 GGCGGCTCGGTAGGGATG 62.301 72.222 0.00 0.00 0.00 3.51
33 34 4.853142 TGGCGGCTCGGTAGGGAT 62.853 66.667 11.43 0.00 0.00 3.85
37 38 2.202756 GAAGTGGCGGCTCGGTAG 60.203 66.667 11.43 0.00 0.00 3.18
38 39 4.124351 CGAAGTGGCGGCTCGGTA 62.124 66.667 11.43 0.00 0.00 4.02
40 41 4.735132 TTCGAAGTGGCGGCTCGG 62.735 66.667 17.00 6.40 0.00 4.63
41 42 2.537792 TACTTCGAAGTGGCGGCTCG 62.538 60.000 35.24 11.82 40.07 5.03
43 44 0.249398 AATACTTCGAAGTGGCGGCT 59.751 50.000 35.24 13.46 40.07 5.52
44 45 1.084289 AAATACTTCGAAGTGGCGGC 58.916 50.000 35.24 0.00 40.07 6.53
45 46 2.606272 GGTAAATACTTCGAAGTGGCGG 59.394 50.000 35.24 9.57 40.07 6.13
46 47 3.518590 AGGTAAATACTTCGAAGTGGCG 58.481 45.455 35.24 10.31 40.07 5.69
47 48 4.567159 CAGAGGTAAATACTTCGAAGTGGC 59.433 45.833 35.24 20.74 40.07 5.01
48 49 4.567159 GCAGAGGTAAATACTTCGAAGTGG 59.433 45.833 35.24 11.07 40.07 4.00
49 50 4.567159 GGCAGAGGTAAATACTTCGAAGTG 59.433 45.833 35.24 18.26 40.07 3.16
50 51 4.466726 AGGCAGAGGTAAATACTTCGAAGT 59.533 41.667 31.70 31.70 42.91 3.01
52 53 5.416271 AAGGCAGAGGTAAATACTTCGAA 57.584 39.130 0.00 0.00 37.38 3.71
54 55 5.420409 AGAAAGGCAGAGGTAAATACTTCG 58.580 41.667 0.00 0.00 37.38 3.79
55 56 7.689446 AAAGAAAGGCAGAGGTAAATACTTC 57.311 36.000 0.00 0.00 33.03 3.01
56 57 8.478775 AAAAAGAAAGGCAGAGGTAAATACTT 57.521 30.769 0.00 0.00 0.00 2.24
78 79 7.831691 TGATTGAAGGGTATGTTCTCAAAAA 57.168 32.000 0.00 0.00 0.00 1.94
79 80 7.831691 TTGATTGAAGGGTATGTTCTCAAAA 57.168 32.000 0.00 0.00 0.00 2.44
80 81 7.831691 TTTGATTGAAGGGTATGTTCTCAAA 57.168 32.000 0.00 0.00 31.11 2.69
81 82 7.831691 TTTTGATTGAAGGGTATGTTCTCAA 57.168 32.000 0.00 0.00 0.00 3.02
82 83 7.723616 TCTTTTTGATTGAAGGGTATGTTCTCA 59.276 33.333 0.00 0.00 0.00 3.27
83 84 8.110860 TCTTTTTGATTGAAGGGTATGTTCTC 57.889 34.615 0.00 0.00 0.00 2.87
84 85 8.477419 TTCTTTTTGATTGAAGGGTATGTTCT 57.523 30.769 0.00 0.00 0.00 3.01
86 87 9.898152 TTTTTCTTTTTGATTGAAGGGTATGTT 57.102 25.926 0.00 0.00 0.00 2.71
109 110 7.375834 ACGAGGAACTTTTCTTTCTTGTTTTT 58.624 30.769 0.00 0.00 41.55 1.94
110 111 6.920817 ACGAGGAACTTTTCTTTCTTGTTTT 58.079 32.000 0.00 0.00 41.55 2.43
111 112 6.374613 AGACGAGGAACTTTTCTTTCTTGTTT 59.625 34.615 0.00 0.00 41.55 2.83
112 113 5.880887 AGACGAGGAACTTTTCTTTCTTGTT 59.119 36.000 0.00 0.00 41.55 2.83
113 114 5.429130 AGACGAGGAACTTTTCTTTCTTGT 58.571 37.500 0.00 0.00 41.55 3.16
114 115 5.993106 AGACGAGGAACTTTTCTTTCTTG 57.007 39.130 0.00 0.00 41.55 3.02
115 116 7.442656 TCATAGACGAGGAACTTTTCTTTCTT 58.557 34.615 0.00 0.00 41.55 2.52
116 117 6.994221 TCATAGACGAGGAACTTTTCTTTCT 58.006 36.000 0.00 0.00 41.55 2.52
117 118 7.835634 ATCATAGACGAGGAACTTTTCTTTC 57.164 36.000 0.00 0.00 41.55 2.62
118 119 8.622948 AAATCATAGACGAGGAACTTTTCTTT 57.377 30.769 0.00 0.00 41.55 2.52
119 120 9.720769 TTAAATCATAGACGAGGAACTTTTCTT 57.279 29.630 0.00 0.00 41.55 2.52
120 121 9.892130 ATTAAATCATAGACGAGGAACTTTTCT 57.108 29.630 0.00 0.00 41.55 2.52
122 123 8.818057 CGATTAAATCATAGACGAGGAACTTTT 58.182 33.333 0.00 0.00 41.55 2.27
123 124 7.438459 CCGATTAAATCATAGACGAGGAACTTT 59.562 37.037 0.00 0.00 41.55 2.66
124 125 6.924060 CCGATTAAATCATAGACGAGGAACTT 59.076 38.462 0.00 0.00 41.55 2.66
126 127 5.118817 GCCGATTAAATCATAGACGAGGAAC 59.881 44.000 0.00 0.00 0.00 3.62
127 128 5.227908 GCCGATTAAATCATAGACGAGGAA 58.772 41.667 0.00 0.00 0.00 3.36
128 129 4.321750 GGCCGATTAAATCATAGACGAGGA 60.322 45.833 0.00 0.00 0.00 3.71
129 130 3.927142 GGCCGATTAAATCATAGACGAGG 59.073 47.826 0.00 0.00 0.00 4.63
130 131 3.927142 GGGCCGATTAAATCATAGACGAG 59.073 47.826 0.00 0.00 0.00 4.18
131 132 3.576982 AGGGCCGATTAAATCATAGACGA 59.423 43.478 0.00 0.00 0.00 4.20
132 133 3.926616 AGGGCCGATTAAATCATAGACG 58.073 45.455 0.00 0.00 0.00 4.18
133 134 5.875359 CCTTAGGGCCGATTAAATCATAGAC 59.125 44.000 0.00 0.00 0.00 2.59
134 135 5.045869 CCCTTAGGGCCGATTAAATCATAGA 60.046 44.000 3.52 0.00 35.35 1.98
135 136 5.045869 TCCCTTAGGGCCGATTAAATCATAG 60.046 44.000 13.54 0.00 43.94 2.23
137 138 3.655777 TCCCTTAGGGCCGATTAAATCAT 59.344 43.478 13.54 0.00 43.94 2.45
138 139 3.050089 TCCCTTAGGGCCGATTAAATCA 58.950 45.455 13.54 0.00 43.94 2.57
140 141 3.053826 ACTCCCTTAGGGCCGATTAAAT 58.946 45.455 13.54 0.00 43.94 1.40
141 142 2.484602 ACTCCCTTAGGGCCGATTAAA 58.515 47.619 13.54 0.00 43.94 1.52
142 143 2.185663 ACTCCCTTAGGGCCGATTAA 57.814 50.000 13.54 0.00 43.94 1.40
143 144 2.185663 AACTCCCTTAGGGCCGATTA 57.814 50.000 13.54 0.00 43.94 1.75
145 146 1.767088 GTAAACTCCCTTAGGGCCGAT 59.233 52.381 13.54 1.56 43.94 4.18
146 147 1.197812 GTAAACTCCCTTAGGGCCGA 58.802 55.000 13.54 0.00 43.94 5.54
147 148 1.138464 GAGTAAACTCCCTTAGGGCCG 59.862 57.143 13.54 8.64 43.94 6.13
148 149 1.138464 CGAGTAAACTCCCTTAGGGCC 59.862 57.143 13.54 0.00 43.94 5.80
149 150 2.105766 TCGAGTAAACTCCCTTAGGGC 58.894 52.381 13.54 0.00 43.94 5.19
150 151 2.429971 GGTCGAGTAAACTCCCTTAGGG 59.570 54.545 11.94 11.94 46.11 3.53
151 152 2.429971 GGGTCGAGTAAACTCCCTTAGG 59.570 54.545 4.58 0.00 39.79 2.69
153 154 3.173953 TGGGTCGAGTAAACTCCCTTA 57.826 47.619 6.57 0.00 39.79 2.69
154 155 2.019807 TGGGTCGAGTAAACTCCCTT 57.980 50.000 6.57 0.00 39.79 3.95
155 156 2.236395 CAATGGGTCGAGTAAACTCCCT 59.764 50.000 6.57 0.00 39.79 4.20
156 157 2.027469 ACAATGGGTCGAGTAAACTCCC 60.027 50.000 4.58 1.90 39.79 4.30
157 158 3.259902 GACAATGGGTCGAGTAAACTCC 58.740 50.000 4.58 0.00 39.79 3.85
168 169 0.253327 GGGAGACTGGACAATGGGTC 59.747 60.000 0.00 0.00 46.20 4.46
171 172 1.450312 GCGGGAGACTGGACAATGG 60.450 63.158 0.00 0.00 37.13 3.16
172 173 1.296392 TGCGGGAGACTGGACAATG 59.704 57.895 0.00 0.00 37.13 2.82
173 174 3.805928 TGCGGGAGACTGGACAAT 58.194 55.556 0.00 0.00 37.13 2.71
177 178 3.695606 GCAGTGCGGGAGACTGGA 61.696 66.667 0.00 0.00 41.08 3.86
179 180 2.125753 GAGCAGTGCGGGAGACTG 60.126 66.667 10.00 0.00 43.22 3.51
181 182 1.739562 CTTGAGCAGTGCGGGAGAC 60.740 63.158 10.00 0.00 0.00 3.36
182 183 2.210013 ACTTGAGCAGTGCGGGAGA 61.210 57.895 10.00 0.00 32.83 3.71
183 184 2.031516 CACTTGAGCAGTGCGGGAG 61.032 63.158 10.00 10.90 46.70 4.30
190 191 0.598680 GAGTCGCACACTTGAGCAGT 60.599 55.000 0.00 0.00 34.41 4.40
192 193 1.300931 GGAGTCGCACACTTGAGCA 60.301 57.895 0.00 0.00 34.41 4.26
193 194 2.375766 CGGAGTCGCACACTTGAGC 61.376 63.158 0.00 0.00 34.41 4.26
195 196 0.885879 ATACGGAGTCGCACACTTGA 59.114 50.000 0.00 0.00 43.93 3.02
196 197 0.992072 CATACGGAGTCGCACACTTG 59.008 55.000 0.00 0.00 43.93 3.16
197 198 0.885879 TCATACGGAGTCGCACACTT 59.114 50.000 0.00 0.00 43.93 3.16
199 200 0.525668 CCTCATACGGAGTCGCACAC 60.526 60.000 0.00 0.00 43.93 3.82
200 201 0.678684 TCCTCATACGGAGTCGCACA 60.679 55.000 0.00 0.00 43.93 4.57
201 202 0.248539 GTCCTCATACGGAGTCGCAC 60.249 60.000 0.00 0.00 43.93 5.34
204 205 0.945813 GAGGTCCTCATACGGAGTCG 59.054 60.000 14.46 0.00 43.93 4.18
205 206 1.133730 AGGAGGTCCTCATACGGAGTC 60.134 57.143 20.72 0.00 44.77 3.36
206 207 0.927767 AGGAGGTCCTCATACGGAGT 59.072 55.000 20.72 0.00 44.77 3.85
217 218 0.405973 AGCAAAAGGGAAGGAGGTCC 59.594 55.000 0.00 0.00 36.90 4.46
218 219 1.352687 AGAGCAAAAGGGAAGGAGGTC 59.647 52.381 0.00 0.00 0.00 3.85
219 220 1.074566 CAGAGCAAAAGGGAAGGAGGT 59.925 52.381 0.00 0.00 0.00 3.85
220 221 1.831580 CAGAGCAAAAGGGAAGGAGG 58.168 55.000 0.00 0.00 0.00 4.30
222 223 0.251341 GGCAGAGCAAAAGGGAAGGA 60.251 55.000 0.00 0.00 0.00 3.36
223 224 1.253593 GGGCAGAGCAAAAGGGAAGG 61.254 60.000 0.00 0.00 0.00 3.46
226 227 1.228552 GTGGGCAGAGCAAAAGGGA 60.229 57.895 0.00 0.00 0.00 4.20
228 229 0.251077 AGAGTGGGCAGAGCAAAAGG 60.251 55.000 0.00 0.00 0.00 3.11
229 230 1.163554 GAGAGTGGGCAGAGCAAAAG 58.836 55.000 0.00 0.00 0.00 2.27
230 231 0.250901 GGAGAGTGGGCAGAGCAAAA 60.251 55.000 0.00 0.00 0.00 2.44
231 232 1.376466 GGAGAGTGGGCAGAGCAAA 59.624 57.895 0.00 0.00 0.00 3.68
233 234 3.385384 CGGAGAGTGGGCAGAGCA 61.385 66.667 0.00 0.00 0.00 4.26
234 235 2.844072 GAACGGAGAGTGGGCAGAGC 62.844 65.000 0.00 0.00 0.00 4.09
235 236 1.216710 GAACGGAGAGTGGGCAGAG 59.783 63.158 0.00 0.00 0.00 3.35
236 237 1.533033 TGAACGGAGAGTGGGCAGA 60.533 57.895 0.00 0.00 0.00 4.26
237 238 1.374758 GTGAACGGAGAGTGGGCAG 60.375 63.158 0.00 0.00 0.00 4.85
238 239 2.137528 TGTGAACGGAGAGTGGGCA 61.138 57.895 0.00 0.00 0.00 5.36
239 240 1.668151 GTGTGAACGGAGAGTGGGC 60.668 63.158 0.00 0.00 0.00 5.36
240 241 1.372997 CGTGTGAACGGAGAGTGGG 60.373 63.158 0.00 0.00 0.00 4.61
249 250 2.222213 TGCTTTGATAACCGTGTGAACG 59.778 45.455 0.00 0.00 0.00 3.95
250 251 3.496884 TCTGCTTTGATAACCGTGTGAAC 59.503 43.478 0.00 0.00 0.00 3.18
251 252 3.734463 TCTGCTTTGATAACCGTGTGAA 58.266 40.909 0.00 0.00 0.00 3.18
252 253 3.325870 CTCTGCTTTGATAACCGTGTGA 58.674 45.455 0.00 0.00 0.00 3.58
254 255 2.301870 TCCTCTGCTTTGATAACCGTGT 59.698 45.455 0.00 0.00 0.00 4.49
255 256 2.972625 TCCTCTGCTTTGATAACCGTG 58.027 47.619 0.00 0.00 0.00 4.94
256 257 3.260884 TCTTCCTCTGCTTTGATAACCGT 59.739 43.478 0.00 0.00 0.00 4.83
257 258 3.861840 TCTTCCTCTGCTTTGATAACCG 58.138 45.455 0.00 0.00 0.00 4.44
259 260 3.308323 CGCTCTTCCTCTGCTTTGATAAC 59.692 47.826 0.00 0.00 0.00 1.89
260 261 3.525537 CGCTCTTCCTCTGCTTTGATAA 58.474 45.455 0.00 0.00 0.00 1.75
261 262 2.159043 CCGCTCTTCCTCTGCTTTGATA 60.159 50.000 0.00 0.00 0.00 2.15
263 264 0.036952 CCGCTCTTCCTCTGCTTTGA 60.037 55.000 0.00 0.00 0.00 2.69
265 266 1.298014 CCCGCTCTTCCTCTGCTTT 59.702 57.895 0.00 0.00 0.00 3.51
268 269 4.087892 TGCCCGCTCTTCCTCTGC 62.088 66.667 0.00 0.00 0.00 4.26
269 270 2.186384 CTGCCCGCTCTTCCTCTG 59.814 66.667 0.00 0.00 0.00 3.35
270 271 3.780173 GCTGCCCGCTCTTCCTCT 61.780 66.667 0.00 0.00 35.14 3.69
271 272 4.087892 TGCTGCCCGCTCTTCCTC 62.088 66.667 0.00 0.00 40.11 3.71
272 273 4.093291 CTGCTGCCCGCTCTTCCT 62.093 66.667 0.00 0.00 40.11 3.36
274 275 3.019003 TACCTGCTGCCCGCTCTTC 62.019 63.158 0.00 0.00 40.11 2.87
275 276 3.003173 TACCTGCTGCCCGCTCTT 61.003 61.111 0.00 0.00 40.11 2.85
276 277 3.775654 GTACCTGCTGCCCGCTCT 61.776 66.667 0.00 0.00 40.11 4.09
277 278 4.840005 GGTACCTGCTGCCCGCTC 62.840 72.222 4.06 0.00 40.11 5.03
282 283 2.125512 CTCGTGGTACCTGCTGCC 60.126 66.667 14.36 0.00 0.00 4.85
284 285 2.125512 GGCTCGTGGTACCTGCTG 60.126 66.667 14.36 2.46 0.00 4.41
285 286 3.391382 GGGCTCGTGGTACCTGCT 61.391 66.667 14.36 0.00 0.00 4.24
286 287 3.372554 GAGGGCTCGTGGTACCTGC 62.373 68.421 14.36 11.69 32.42 4.85
287 288 1.682684 AGAGGGCTCGTGGTACCTG 60.683 63.158 14.36 5.90 32.42 4.00
288 289 1.682684 CAGAGGGCTCGTGGTACCT 60.683 63.158 14.36 0.00 35.67 3.08
290 291 1.511768 GACAGAGGGCTCGTGGTAC 59.488 63.158 0.00 0.00 34.09 3.34
291 292 1.681327 GGACAGAGGGCTCGTGGTA 60.681 63.158 0.00 0.00 34.09 3.25
292 293 2.997897 GGACAGAGGGCTCGTGGT 60.998 66.667 0.00 0.00 34.09 4.16
293 294 3.775654 GGGACAGAGGGCTCGTGG 61.776 72.222 0.00 0.00 34.09 4.94
295 296 2.997897 GTGGGACAGAGGGCTCGT 60.998 66.667 0.00 0.00 41.80 4.18
296 297 2.997315 TGTGGGACAGAGGGCTCG 60.997 66.667 0.00 0.00 41.80 5.03
298 299 1.539869 ATGTGTGGGACAGAGGGCT 60.540 57.895 0.00 0.00 41.80 5.19
299 300 1.078143 GATGTGTGGGACAGAGGGC 60.078 63.158 0.00 0.00 41.80 5.19
300 301 1.866015 TAGATGTGTGGGACAGAGGG 58.134 55.000 0.00 0.00 41.80 4.30
302 303 4.403752 TCTTGATAGATGTGTGGGACAGAG 59.596 45.833 0.00 0.00 41.80 3.35
304 305 4.743057 TCTTGATAGATGTGTGGGACAG 57.257 45.455 0.00 0.00 41.80 3.51
307 308 3.519107 TGCTTCTTGATAGATGTGTGGGA 59.481 43.478 0.00 0.00 0.00 4.37
308 309 3.877559 TGCTTCTTGATAGATGTGTGGG 58.122 45.455 0.00 0.00 0.00 4.61
309 310 4.940046 ACTTGCTTCTTGATAGATGTGTGG 59.060 41.667 0.00 0.00 0.00 4.17
310 311 5.410746 ACACTTGCTTCTTGATAGATGTGTG 59.589 40.000 0.00 0.00 34.21 3.82
311 312 5.555017 ACACTTGCTTCTTGATAGATGTGT 58.445 37.500 0.00 0.00 0.00 3.72
312 313 6.815641 ACTACACTTGCTTCTTGATAGATGTG 59.184 38.462 0.00 0.00 0.00 3.21
313 314 6.940739 ACTACACTTGCTTCTTGATAGATGT 58.059 36.000 0.00 0.00 0.00 3.06
316 317 6.868864 GTGAACTACACTTGCTTCTTGATAGA 59.131 38.462 0.00 0.00 45.13 1.98
317 318 7.054855 GTGAACTACACTTGCTTCTTGATAG 57.945 40.000 0.00 0.00 45.13 2.08
319 320 5.931441 GTGAACTACACTTGCTTCTTGAT 57.069 39.130 0.00 0.00 45.13 2.57
332 333 3.993382 GTGGAACCGGTGAACTACA 57.007 52.632 8.52 0.00 0.00 2.74
345 346 2.365617 GAGATAGGAGCATTCGGTGGAA 59.634 50.000 0.00 0.00 36.41 3.53
346 347 1.964223 GAGATAGGAGCATTCGGTGGA 59.036 52.381 0.00 0.00 0.00 4.02
348 349 2.351253 CGAGAGATAGGAGCATTCGGTG 60.351 54.545 0.00 0.00 0.00 4.94
349 350 1.883275 CGAGAGATAGGAGCATTCGGT 59.117 52.381 0.00 0.00 0.00 4.69
351 352 1.402194 GCCGAGAGATAGGAGCATTCG 60.402 57.143 0.00 0.00 0.00 3.34
352 353 1.615883 TGCCGAGAGATAGGAGCATTC 59.384 52.381 0.00 0.00 0.00 2.67
354 355 1.709578 TTGCCGAGAGATAGGAGCAT 58.290 50.000 0.00 0.00 0.00 3.79
355 356 1.410517 CTTTGCCGAGAGATAGGAGCA 59.589 52.381 0.00 0.00 0.00 4.26
356 357 1.683917 TCTTTGCCGAGAGATAGGAGC 59.316 52.381 0.00 0.00 0.00 4.70
357 358 3.365868 CGATCTTTGCCGAGAGATAGGAG 60.366 52.174 0.00 0.00 32.96 3.69
358 359 2.554462 CGATCTTTGCCGAGAGATAGGA 59.446 50.000 0.00 0.00 32.96 2.94
359 360 2.294791 ACGATCTTTGCCGAGAGATAGG 59.705 50.000 0.00 0.00 32.96 2.57
360 361 3.243234 ACACGATCTTTGCCGAGAGATAG 60.243 47.826 0.00 0.00 32.96 2.08
361 362 2.688446 ACACGATCTTTGCCGAGAGATA 59.312 45.455 0.00 0.00 32.96 1.98
362 363 1.478510 ACACGATCTTTGCCGAGAGAT 59.521 47.619 0.00 0.00 35.41 2.75
363 364 0.888619 ACACGATCTTTGCCGAGAGA 59.111 50.000 0.00 0.00 0.00 3.10
364 365 0.994995 CACACGATCTTTGCCGAGAG 59.005 55.000 0.00 0.00 0.00 3.20
365 366 0.601057 TCACACGATCTTTGCCGAGA 59.399 50.000 0.00 0.00 0.00 4.04
368 369 0.439985 CACTCACACGATCTTTGCCG 59.560 55.000 0.00 0.00 0.00 5.69
370 371 1.398960 GCACACTCACACGATCTTTGC 60.399 52.381 0.00 0.00 0.00 3.68
371 372 1.866601 TGCACACTCACACGATCTTTG 59.133 47.619 0.00 0.00 0.00 2.77
373 374 1.069204 ACTGCACACTCACACGATCTT 59.931 47.619 0.00 0.00 0.00 2.40
374 375 0.676184 ACTGCACACTCACACGATCT 59.324 50.000 0.00 0.00 0.00 2.75
376 377 2.812358 TAACTGCACACTCACACGAT 57.188 45.000 0.00 0.00 0.00 3.73
378 379 2.861763 CATAACTGCACACTCACACG 57.138 50.000 0.00 0.00 0.00 4.49
390 391 1.936547 GAAGCCTCCGAAGCATAACTG 59.063 52.381 0.00 0.00 0.00 3.16
391 392 1.555075 TGAAGCCTCCGAAGCATAACT 59.445 47.619 0.00 0.00 0.00 2.24
392 393 1.666189 GTGAAGCCTCCGAAGCATAAC 59.334 52.381 0.00 0.00 0.00 1.89
393 394 1.406887 GGTGAAGCCTCCGAAGCATAA 60.407 52.381 0.00 0.00 0.00 1.90
396 397 1.841302 ATGGTGAAGCCTCCGAAGCA 61.841 55.000 0.00 0.00 38.35 3.91
398 399 0.745845 CCATGGTGAAGCCTCCGAAG 60.746 60.000 2.57 0.00 38.35 3.79
399 400 1.198094 TCCATGGTGAAGCCTCCGAA 61.198 55.000 12.58 0.00 38.35 4.30
401 402 0.107017 ATTCCATGGTGAAGCCTCCG 60.107 55.000 12.58 0.00 38.35 4.63
402 403 2.439507 TCTATTCCATGGTGAAGCCTCC 59.560 50.000 12.58 0.00 38.35 4.30
403 404 3.845781 TCTATTCCATGGTGAAGCCTC 57.154 47.619 12.58 0.00 38.35 4.70
404 405 3.244353 CGATCTATTCCATGGTGAAGCCT 60.244 47.826 12.58 0.00 38.35 4.58
405 406 3.070018 CGATCTATTCCATGGTGAAGCC 58.930 50.000 12.58 2.76 37.90 4.35
407 408 6.226052 TGAATCGATCTATTCCATGGTGAAG 58.774 40.000 12.58 7.58 35.40 3.02
408 409 6.173427 TGAATCGATCTATTCCATGGTGAA 57.827 37.500 12.58 0.00 35.40 3.18
409 410 5.305386 ACTGAATCGATCTATTCCATGGTGA 59.695 40.000 12.58 6.79 35.40 4.02
410 411 5.545588 ACTGAATCGATCTATTCCATGGTG 58.454 41.667 12.58 1.15 35.40 4.17
411 412 5.815233 ACTGAATCGATCTATTCCATGGT 57.185 39.130 12.58 7.82 35.40 3.55
413 414 5.347093 CCGAACTGAATCGATCTATTCCATG 59.653 44.000 15.27 9.26 45.48 3.66
414 415 5.473931 CCGAACTGAATCGATCTATTCCAT 58.526 41.667 15.27 3.19 45.48 3.41
415 416 4.262036 CCCGAACTGAATCGATCTATTCCA 60.262 45.833 15.27 5.20 45.48 3.53
417 418 4.238514 CCCCGAACTGAATCGATCTATTC 58.761 47.826 11.97 11.97 45.48 1.75
418 419 3.555168 GCCCCGAACTGAATCGATCTATT 60.555 47.826 0.00 0.00 45.48 1.73
419 420 2.028930 GCCCCGAACTGAATCGATCTAT 60.029 50.000 0.00 0.00 45.48 1.98
421 422 0.105039 GCCCCGAACTGAATCGATCT 59.895 55.000 0.00 0.00 45.48 2.75
422 423 0.880718 GGCCCCGAACTGAATCGATC 60.881 60.000 0.00 0.00 45.48 3.69
424 425 2.582436 GGCCCCGAACTGAATCGA 59.418 61.111 0.00 0.00 45.48 3.59
425 426 2.890474 CGGCCCCGAACTGAATCG 60.890 66.667 0.00 0.00 42.83 3.34
426 427 2.513897 CCGGCCCCGAACTGAATC 60.514 66.667 8.54 0.00 42.83 2.52
473 474 4.436998 CCTCTGGACGGTGTCGCC 62.437 72.222 0.00 0.00 40.63 5.54
474 475 3.343788 CTCCTCTGGACGGTGTCGC 62.344 68.421 0.00 0.00 40.63 5.19
475 476 2.701780 CCTCCTCTGGACGGTGTCG 61.702 68.421 0.00 0.00 43.02 4.35
476 477 1.596895 GACCTCCTCTGGACGGTGTC 61.597 65.000 10.80 0.00 34.85 3.67
477 478 1.606889 GACCTCCTCTGGACGGTGT 60.607 63.158 10.80 0.00 34.85 4.16
478 479 1.599606 CTGACCTCCTCTGGACGGTG 61.600 65.000 10.80 0.00 34.85 4.94
479 480 1.304547 CTGACCTCCTCTGGACGGT 60.305 63.158 7.22 7.22 36.46 4.83
480 481 2.055042 CCTGACCTCCTCTGGACGG 61.055 68.421 0.00 0.00 39.84 4.79
481 482 2.055042 CCCTGACCTCCTCTGGACG 61.055 68.421 0.00 0.00 39.84 4.79
482 483 1.687493 CCCCTGACCTCCTCTGGAC 60.687 68.421 0.00 0.00 39.84 4.02
484 485 0.762461 GATCCCCTGACCTCCTCTGG 60.762 65.000 0.00 0.00 37.67 3.86
486 487 1.231641 CGATCCCCTGACCTCCTCT 59.768 63.158 0.00 0.00 0.00 3.69
487 488 0.397254 TTCGATCCCCTGACCTCCTC 60.397 60.000 0.00 0.00 0.00 3.71
488 489 0.397816 CTTCGATCCCCTGACCTCCT 60.398 60.000 0.00 0.00 0.00 3.69
489 490 0.397254 TCTTCGATCCCCTGACCTCC 60.397 60.000 0.00 0.00 0.00 4.30
490 491 1.410882 CTTCTTCGATCCCCTGACCTC 59.589 57.143 0.00 0.00 0.00 3.85
491 492 1.490574 CTTCTTCGATCCCCTGACCT 58.509 55.000 0.00 0.00 0.00 3.85
492 493 0.466124 CCTTCTTCGATCCCCTGACC 59.534 60.000 0.00 0.00 0.00 4.02
493 494 1.134670 CACCTTCTTCGATCCCCTGAC 60.135 57.143 0.00 0.00 0.00 3.51
494 495 1.195115 CACCTTCTTCGATCCCCTGA 58.805 55.000 0.00 0.00 0.00 3.86
495 496 0.462759 GCACCTTCTTCGATCCCCTG 60.463 60.000 0.00 0.00 0.00 4.45
496 497 1.627297 GGCACCTTCTTCGATCCCCT 61.627 60.000 0.00 0.00 0.00 4.79
498 499 4.542075 GGCACCTTCTTCGATCCC 57.458 61.111 0.00 0.00 0.00 3.85
522 523 2.021793 CATGCAATGCGGTCGTCG 59.978 61.111 0.00 0.00 37.62 5.12
524 525 1.233950 TTGTCATGCAATGCGGTCGT 61.234 50.000 0.00 0.00 46.21 4.34
525 526 0.109827 TTTGTCATGCAATGCGGTCG 60.110 50.000 0.00 0.00 46.21 4.79
526 527 1.335780 TGTTTGTCATGCAATGCGGTC 60.336 47.619 0.00 0.00 46.21 4.79
527 528 0.672889 TGTTTGTCATGCAATGCGGT 59.327 45.000 0.00 0.00 46.21 5.68
528 529 1.062258 GTGTTTGTCATGCAATGCGG 58.938 50.000 0.00 0.00 46.21 5.69
530 531 3.715618 CATGTGTTTGTCATGCAATGC 57.284 42.857 0.00 0.00 46.21 3.56
538 539 0.665835 GTTCGGGCATGTGTTTGTCA 59.334 50.000 0.00 0.00 0.00 3.58
540 541 0.753479 TGGTTCGGGCATGTGTTTGT 60.753 50.000 0.00 0.00 0.00 2.83
542 543 1.791103 CGTGGTTCGGGCATGTGTTT 61.791 55.000 0.00 0.00 35.71 2.83
543 544 2.258013 CGTGGTTCGGGCATGTGTT 61.258 57.895 0.00 0.00 35.71 3.32
544 545 2.668212 CGTGGTTCGGGCATGTGT 60.668 61.111 0.00 0.00 35.71 3.72
545 546 4.101790 GCGTGGTTCGGGCATGTG 62.102 66.667 0.00 0.00 40.26 3.21
557 558 3.047877 GTCCCTCAAACCGCGTGG 61.048 66.667 14.93 14.93 42.84 4.94
558 559 3.411351 CGTCCCTCAAACCGCGTG 61.411 66.667 4.92 0.00 0.00 5.34
559 560 4.675029 CCGTCCCTCAAACCGCGT 62.675 66.667 4.92 0.00 0.00 6.01
563 564 2.281276 AACGCCGTCCCTCAAACC 60.281 61.111 0.00 0.00 0.00 3.27
564 565 2.613506 CCAACGCCGTCCCTCAAAC 61.614 63.158 0.00 0.00 0.00 2.93
565 566 2.119484 ATCCAACGCCGTCCCTCAAA 62.119 55.000 0.00 0.00 0.00 2.69
566 567 1.259142 TATCCAACGCCGTCCCTCAA 61.259 55.000 0.00 0.00 0.00 3.02
567 568 1.683025 TATCCAACGCCGTCCCTCA 60.683 57.895 0.00 0.00 0.00 3.86
568 569 1.227176 GTATCCAACGCCGTCCCTC 60.227 63.158 0.00 0.00 0.00 4.30
569 570 2.728435 GGTATCCAACGCCGTCCCT 61.728 63.158 0.00 0.00 0.00 4.20
570 571 2.202974 GGTATCCAACGCCGTCCC 60.203 66.667 0.00 0.00 0.00 4.46
571 572 2.202974 GGGTATCCAACGCCGTCC 60.203 66.667 0.00 0.00 35.04 4.79
580 581 0.039035 GGCAGTTGTTGGGGTATCCA 59.961 55.000 0.00 0.00 45.43 3.41
581 582 0.331616 AGGCAGTTGTTGGGGTATCC 59.668 55.000 0.00 0.00 0.00 2.59
582 583 2.215942 AAGGCAGTTGTTGGGGTATC 57.784 50.000 0.00 0.00 0.00 2.24
583 584 2.632512 CAAAAGGCAGTTGTTGGGGTAT 59.367 45.455 0.00 0.00 0.00 2.73
584 585 2.035632 CAAAAGGCAGTTGTTGGGGTA 58.964 47.619 0.00 0.00 0.00 3.69
585 586 0.829990 CAAAAGGCAGTTGTTGGGGT 59.170 50.000 0.00 0.00 0.00 4.95
588 589 6.099341 GGTATTATCAAAAGGCAGTTGTTGG 58.901 40.000 0.00 0.00 0.00 3.77
589 590 6.586082 GTGGTATTATCAAAAGGCAGTTGTTG 59.414 38.462 0.00 0.00 0.00 3.33
590 591 6.295067 GGTGGTATTATCAAAAGGCAGTTGTT 60.295 38.462 0.00 0.00 0.00 2.83
591 592 5.185056 GGTGGTATTATCAAAAGGCAGTTGT 59.815 40.000 0.00 0.00 0.00 3.32
592 593 5.184864 TGGTGGTATTATCAAAAGGCAGTTG 59.815 40.000 0.00 0.00 0.00 3.16
593 594 5.185056 GTGGTGGTATTATCAAAAGGCAGTT 59.815 40.000 0.00 0.00 0.00 3.16
594 595 4.705023 GTGGTGGTATTATCAAAAGGCAGT 59.295 41.667 0.00 0.00 0.00 4.40
595 596 4.704540 TGTGGTGGTATTATCAAAAGGCAG 59.295 41.667 0.00 0.00 0.00 4.85
597 598 4.947388 TCTGTGGTGGTATTATCAAAAGGC 59.053 41.667 0.00 0.00 0.00 4.35
598 599 6.659242 AGTTCTGTGGTGGTATTATCAAAAGG 59.341 38.462 0.00 0.00 0.00 3.11
601 602 6.177610 GGAGTTCTGTGGTGGTATTATCAAA 58.822 40.000 0.00 0.00 0.00 2.69
603 604 4.163458 GGGAGTTCTGTGGTGGTATTATCA 59.837 45.833 0.00 0.00 0.00 2.15
604 605 4.163458 TGGGAGTTCTGTGGTGGTATTATC 59.837 45.833 0.00 0.00 0.00 1.75
605 606 4.080526 GTGGGAGTTCTGTGGTGGTATTAT 60.081 45.833 0.00 0.00 0.00 1.28
606 607 3.262405 GTGGGAGTTCTGTGGTGGTATTA 59.738 47.826 0.00 0.00 0.00 0.98
607 608 2.039879 GTGGGAGTTCTGTGGTGGTATT 59.960 50.000 0.00 0.00 0.00 1.89
608 609 1.628846 GTGGGAGTTCTGTGGTGGTAT 59.371 52.381 0.00 0.00 0.00 2.73
609 610 1.053424 GTGGGAGTTCTGTGGTGGTA 58.947 55.000 0.00 0.00 0.00 3.25
610 611 1.705997 GGTGGGAGTTCTGTGGTGGT 61.706 60.000 0.00 0.00 0.00 4.16
611 612 1.073199 GGTGGGAGTTCTGTGGTGG 59.927 63.158 0.00 0.00 0.00 4.61
613 614 0.192566 TAGGGTGGGAGTTCTGTGGT 59.807 55.000 0.00 0.00 0.00 4.16
614 615 0.613777 GTAGGGTGGGAGTTCTGTGG 59.386 60.000 0.00 0.00 0.00 4.17
615 616 1.645710 AGTAGGGTGGGAGTTCTGTG 58.354 55.000 0.00 0.00 0.00 3.66
616 617 1.978580 CAAGTAGGGTGGGAGTTCTGT 59.021 52.381 0.00 0.00 0.00 3.41
617 618 1.978580 ACAAGTAGGGTGGGAGTTCTG 59.021 52.381 0.00 0.00 0.00 3.02
618 619 2.258109 GACAAGTAGGGTGGGAGTTCT 58.742 52.381 0.00 0.00 0.00 3.01
619 620 1.067071 CGACAAGTAGGGTGGGAGTTC 60.067 57.143 0.00 0.00 0.00 3.01
621 622 0.903454 CCGACAAGTAGGGTGGGAGT 60.903 60.000 0.00 0.00 36.35 3.85
623 624 0.472352 AACCGACAAGTAGGGTGGGA 60.472 55.000 4.40 0.00 37.54 4.37
624 625 0.399075 AAACCGACAAGTAGGGTGGG 59.601 55.000 4.40 0.00 39.71 4.61
625 626 1.877443 CAAAACCGACAAGTAGGGTGG 59.123 52.381 4.40 0.00 33.47 4.61
628 629 2.841215 TCACAAAACCGACAAGTAGGG 58.159 47.619 4.40 0.00 0.00 3.53
629 630 3.623960 TGTTCACAAAACCGACAAGTAGG 59.376 43.478 0.00 0.00 0.00 3.18
630 631 4.868450 TGTTCACAAAACCGACAAGTAG 57.132 40.909 0.00 0.00 0.00 2.57
631 632 5.624344 TTTGTTCACAAAACCGACAAGTA 57.376 34.783 2.53 0.00 42.26 2.24
632 633 4.506886 TTTGTTCACAAAACCGACAAGT 57.493 36.364 2.53 0.00 42.26 3.16
659 660 9.584839 GCATTTGTTATTTTGACAATGACTTTC 57.415 29.630 0.00 0.00 36.92 2.62
660 661 9.328845 AGCATTTGTTATTTTGACAATGACTTT 57.671 25.926 0.00 0.00 36.92 2.66
661 662 8.767085 CAGCATTTGTTATTTTGACAATGACTT 58.233 29.630 0.00 0.00 36.92 3.01
662 663 8.143193 TCAGCATTTGTTATTTTGACAATGACT 58.857 29.630 0.00 0.00 36.92 3.41
664 665 8.763356 GTTCAGCATTTGTTATTTTGACAATGA 58.237 29.630 0.00 0.00 36.92 2.57
665 666 8.549548 TGTTCAGCATTTGTTATTTTGACAATG 58.450 29.630 0.00 0.00 36.92 2.82
666 667 8.659925 TGTTCAGCATTTGTTATTTTGACAAT 57.340 26.923 0.00 0.00 36.92 2.71
668 669 8.484641 TTTGTTCAGCATTTGTTATTTTGACA 57.515 26.923 0.00 0.00 0.00 3.58
669 670 9.934190 ATTTTGTTCAGCATTTGTTATTTTGAC 57.066 25.926 0.00 0.00 0.00 3.18
678 679 7.095691 CGGTTCATAATTTTGTTCAGCATTTGT 60.096 33.333 0.00 0.00 0.00 2.83
680 681 6.368516 CCGGTTCATAATTTTGTTCAGCATTT 59.631 34.615 0.00 0.00 0.00 2.32
681 682 5.868801 CCGGTTCATAATTTTGTTCAGCATT 59.131 36.000 0.00 0.00 0.00 3.56
682 683 5.184864 TCCGGTTCATAATTTTGTTCAGCAT 59.815 36.000 0.00 0.00 0.00 3.79
684 685 4.857037 GTCCGGTTCATAATTTTGTTCAGC 59.143 41.667 0.00 0.00 0.00 4.26
685 686 6.254281 AGTCCGGTTCATAATTTTGTTCAG 57.746 37.500 0.00 0.00 0.00 3.02
686 687 6.642707 AAGTCCGGTTCATAATTTTGTTCA 57.357 33.333 0.00 0.00 0.00 3.18
687 688 7.436970 ACAAAAGTCCGGTTCATAATTTTGTTC 59.563 33.333 19.53 0.00 43.18 3.18
689 690 6.811954 ACAAAAGTCCGGTTCATAATTTTGT 58.188 32.000 19.53 19.53 41.80 2.83
690 691 8.079809 ACTACAAAAGTCCGGTTCATAATTTTG 58.920 33.333 18.53 18.53 40.31 2.44
691 692 8.173542 ACTACAAAAGTCCGGTTCATAATTTT 57.826 30.769 0.00 0.00 30.33 1.82
692 693 7.754851 ACTACAAAAGTCCGGTTCATAATTT 57.245 32.000 0.00 0.00 30.33 1.82
694 695 7.308951 CCAAACTACAAAAGTCCGGTTCATAAT 60.309 37.037 0.00 0.00 37.50 1.28
695 696 6.016943 CCAAACTACAAAAGTCCGGTTCATAA 60.017 38.462 0.00 0.00 37.50 1.90
696 697 5.470777 CCAAACTACAAAAGTCCGGTTCATA 59.529 40.000 0.00 0.00 37.50 2.15
698 699 3.628487 CCAAACTACAAAAGTCCGGTTCA 59.372 43.478 0.00 0.00 37.50 3.18
699 700 3.628942 ACCAAACTACAAAAGTCCGGTTC 59.371 43.478 0.00 0.00 38.77 3.62
700 701 3.623703 ACCAAACTACAAAAGTCCGGTT 58.376 40.909 0.00 0.00 38.77 4.44
701 702 3.286329 ACCAAACTACAAAAGTCCGGT 57.714 42.857 0.00 0.00 37.50 5.28
703 704 5.404667 GTCTCTACCAAACTACAAAAGTCCG 59.595 44.000 0.00 0.00 37.50 4.79
704 705 5.404667 CGTCTCTACCAAACTACAAAAGTCC 59.595 44.000 0.00 0.00 37.50 3.85
705 706 5.107568 GCGTCTCTACCAAACTACAAAAGTC 60.108 44.000 0.00 0.00 37.50 3.01
707 708 4.748102 TGCGTCTCTACCAAACTACAAAAG 59.252 41.667 0.00 0.00 0.00 2.27
708 709 4.695396 TGCGTCTCTACCAAACTACAAAA 58.305 39.130 0.00 0.00 0.00 2.44
709 710 4.325028 TGCGTCTCTACCAAACTACAAA 57.675 40.909 0.00 0.00 0.00 2.83
710 711 4.491676 GATGCGTCTCTACCAAACTACAA 58.508 43.478 0.00 0.00 0.00 2.41
711 712 3.427098 CGATGCGTCTCTACCAAACTACA 60.427 47.826 4.05 0.00 0.00 2.74
712 713 3.106672 CGATGCGTCTCTACCAAACTAC 58.893 50.000 4.05 0.00 0.00 2.73
714 715 1.544691 ACGATGCGTCTCTACCAAACT 59.455 47.619 4.05 0.00 33.69 2.66
716 717 1.403647 CCACGATGCGTCTCTACCAAA 60.404 52.381 4.05 0.00 38.32 3.28
720 721 1.333931 TGATCCACGATGCGTCTCTAC 59.666 52.381 4.05 0.00 38.32 2.59
722 723 0.383590 CTGATCCACGATGCGTCTCT 59.616 55.000 4.05 0.00 38.32 3.10
723 724 0.101399 ACTGATCCACGATGCGTCTC 59.899 55.000 4.05 0.00 38.32 3.36
726 727 0.815095 TGTACTGATCCACGATGCGT 59.185 50.000 0.00 0.00 42.36 5.24
727 728 2.140065 ATGTACTGATCCACGATGCG 57.860 50.000 0.00 0.00 0.00 4.73
728 729 3.198068 ACAATGTACTGATCCACGATGC 58.802 45.455 0.00 0.00 0.00 3.91
729 730 4.432712 TGACAATGTACTGATCCACGATG 58.567 43.478 0.00 0.00 0.00 3.84
731 732 4.529109 TTGACAATGTACTGATCCACGA 57.471 40.909 0.00 0.00 0.00 4.35
755 756 5.840693 AGAACCCAAATGACTTCCAAGATTT 59.159 36.000 0.00 0.00 0.00 2.17
756 757 5.397360 AGAACCCAAATGACTTCCAAGATT 58.603 37.500 0.00 0.00 0.00 2.40
757 758 5.003096 AGAACCCAAATGACTTCCAAGAT 57.997 39.130 0.00 0.00 0.00 2.40
758 759 4.453480 AGAACCCAAATGACTTCCAAGA 57.547 40.909 0.00 0.00 0.00 3.02
759 760 5.126061 CCATAGAACCCAAATGACTTCCAAG 59.874 44.000 0.00 0.00 0.00 3.61
760 761 5.016173 CCATAGAACCCAAATGACTTCCAA 58.984 41.667 0.00 0.00 0.00 3.53
761 762 4.290985 TCCATAGAACCCAAATGACTTCCA 59.709 41.667 0.00 0.00 0.00 3.53
763 764 4.332819 CGTCCATAGAACCCAAATGACTTC 59.667 45.833 0.00 0.00 0.00 3.01
766 767 2.354821 GCGTCCATAGAACCCAAATGAC 59.645 50.000 0.00 0.00 0.00 3.06
767 768 2.238646 AGCGTCCATAGAACCCAAATGA 59.761 45.455 0.00 0.00 0.00 2.57
776 777 2.767536 GCAAGCAGCGTCCATAGAA 58.232 52.632 0.00 0.00 0.00 2.10
793 795 1.660560 ATCTGCACGATGCCCAAAGC 61.661 55.000 7.38 0.00 44.23 3.51
795 797 1.314534 CCATCTGCACGATGCCCAAA 61.315 55.000 16.26 0.00 46.61 3.28
796 798 1.750018 CCATCTGCACGATGCCCAA 60.750 57.895 16.26 0.00 46.61 4.12
803 806 2.288666 GGCTTATTTCCATCTGCACGA 58.711 47.619 0.00 0.00 0.00 4.35
809 812 1.843851 TCCCACGGCTTATTTCCATCT 59.156 47.619 0.00 0.00 0.00 2.90
820 823 1.774254 TCCAAATGATATCCCACGGCT 59.226 47.619 0.00 0.00 0.00 5.52
821 824 2.270352 TCCAAATGATATCCCACGGC 57.730 50.000 0.00 0.00 0.00 5.68
826 829 3.508793 CACAGCCATCCAAATGATATCCC 59.491 47.826 0.00 0.00 34.61 3.85
845 848 3.088532 GCCAAGTTACCATCCAATCACA 58.911 45.455 0.00 0.00 0.00 3.58
847 850 3.010027 TGAGCCAAGTTACCATCCAATCA 59.990 43.478 0.00 0.00 0.00 2.57
895 899 5.588648 TCGTGTGATGAGGTCTTTTTCTTTT 59.411 36.000 0.00 0.00 0.00 2.27
907 911 2.184322 CCCGGTCGTGTGATGAGG 59.816 66.667 0.00 0.00 0.00 3.86
909 913 4.077184 GCCCCGGTCGTGTGATGA 62.077 66.667 0.00 0.00 0.00 2.92
941 5256 0.108804 GGAGATTCGAGTGGCGTTGA 60.109 55.000 0.00 0.00 41.80 3.18
1063 5397 1.292941 TGGAGAGAGAGGAGAGGGGG 61.293 65.000 0.00 0.00 0.00 5.40
1068 5402 1.077357 GCGGTGGAGAGAGAGGAGA 60.077 63.158 0.00 0.00 0.00 3.71
1113 5450 0.674534 CGAATCTAGGGTTCGGGGAG 59.325 60.000 17.82 0.00 43.36 4.30
1356 5693 2.280404 ATAGACCGAGCCCCGTGAGA 62.280 60.000 0.00 0.00 36.31 3.27
1365 5702 0.676736 CAGAAGGGGATAGACCGAGC 59.323 60.000 0.00 0.00 40.11 5.03
1416 5753 3.733337 GACAGATCTATGGCGGAATTGT 58.267 45.455 0.00 0.00 0.00 2.71
1434 5772 4.191243 TCCAGCTTGGAGACGACA 57.809 55.556 0.00 0.00 42.67 4.35
1611 5955 4.368315 CGGTGAAGATCATCGGTATTTGA 58.632 43.478 5.14 0.00 46.42 2.69
1627 5971 4.020617 CTCTGGGCTGGCGGTGAA 62.021 66.667 0.00 0.00 0.00 3.18
1649 5993 3.147595 TCGCGACCATCTCCAGGG 61.148 66.667 3.71 0.00 0.00 4.45
1666 6010 1.315257 ACACCTATACGTTCGGCGGT 61.315 55.000 7.21 0.00 46.52 5.68
1803 6147 0.754587 TGGACACAGCAATGCCAACA 60.755 50.000 0.00 0.00 0.00 3.33
1836 6180 2.035961 CACTTCCTTTGACCGTCTCAGA 59.964 50.000 0.00 0.00 0.00 3.27
1854 6198 1.302351 GGACTTGAGCTGCAGCACT 60.302 57.895 38.24 21.10 45.16 4.40
1882 6226 1.450312 CCAAGCCCACCTTAGAGCG 60.450 63.158 0.00 0.00 31.00 5.03
1883 6227 0.328258 TTCCAAGCCCACCTTAGAGC 59.672 55.000 0.00 0.00 31.00 4.09
1923 6267 1.191535 TGTAAGTGAGCATAGCGGGT 58.808 50.000 0.00 0.00 0.00 5.28
2005 6349 3.418995 AGTAGTCTCTGCCGTGACTTAA 58.581 45.455 16.36 0.00 42.29 1.85
2029 6373 0.593618 TCGCTGATCGAGACCATAGC 59.406 55.000 0.00 0.00 43.16 2.97
2294 7100 0.250727 TTCCCTACAAGTGGCAGCAC 60.251 55.000 0.00 0.00 0.00 4.40
2366 7991 3.740321 AGTGTAAACATTTTTGCGCCATG 59.260 39.130 4.18 4.62 38.26 3.66
2582 8338 3.579709 AGTGTCATCAACTAACAGAGCG 58.420 45.455 0.00 0.00 0.00 5.03


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.