Multiple sequence alignment - TraesCS6B01G058900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G058900 chr6B 100.000 3960 0 0 1 3960 38963068 38967027 0.000000e+00 7313
1 TraesCS6B01G058900 chr6B 96.194 1839 53 6 1940 3763 692809311 692811147 0.000000e+00 2992
2 TraesCS6B01G058900 chr6B 94.003 1951 84 22 1 1939 68670101 68672030 0.000000e+00 2924
3 TraesCS6B01G058900 chr6B 95.427 1837 50 9 1938 3759 696365799 696363982 0.000000e+00 2896
4 TraesCS6B01G058900 chr6B 95.359 1810 54 8 1938 3721 68672455 68674260 0.000000e+00 2850
5 TraesCS6B01G058900 chr6B 95.609 1412 46 7 529 1939 49673756 49672360 0.000000e+00 2250
6 TraesCS6B01G058900 chr6B 96.233 1354 35 5 1938 3277 49671938 49670587 0.000000e+00 2204
7 TraesCS6B01G058900 chr6B 93.595 1374 49 13 1 1349 696368673 696367314 0.000000e+00 2013
8 TraesCS6B01G058900 chr6B 94.307 1335 37 12 1 1309 692806949 692808270 0.000000e+00 2008
9 TraesCS6B01G058900 chr6B 97.839 509 10 1 1431 1939 696366732 696366225 0.000000e+00 878
10 TraesCS6B01G058900 chr7A 96.714 1826 48 6 1938 3763 552980096 552978283 0.000000e+00 3029
11 TraesCS6B01G058900 chr7A 94.047 1327 55 16 1 1309 552982456 552981136 0.000000e+00 1991
12 TraesCS6B01G058900 chr3B 96.409 1838 46 7 1938 3761 756243723 756241892 0.000000e+00 3011
13 TraesCS6B01G058900 chr3B 97.324 1009 25 1 2707 3715 770345134 770346140 0.000000e+00 1712
14 TraesCS6B01G058900 chr3B 90.667 900 55 16 1 879 800824936 800824045 0.000000e+00 1170
15 TraesCS6B01G058900 chr3B 97.487 597 14 1 1343 1939 756244742 756244147 0.000000e+00 1018
16 TraesCS6B01G058900 chr3B 98.995 199 1 1 3762 3960 728311475 728311278 4.870000e-94 355
17 TraesCS6B01G058900 chr3B 98.492 199 2 1 3762 3960 650061681 650061878 2.260000e-92 350
18 TraesCS6B01G058900 chr3B 97.959 196 3 1 3762 3957 827277061 827277255 4.900000e-89 339
19 TraesCS6B01G058900 chr3B 97.487 199 4 1 3762 3960 827340082 827340279 4.900000e-89 339
20 TraesCS6B01G058900 chr3B 97.487 199 4 1 3762 3960 827344750 827344947 4.900000e-89 339
21 TraesCS6B01G058900 chr3B 97.487 199 4 1 3762 3960 827388480 827388677 4.900000e-89 339
22 TraesCS6B01G058900 chr3B 97.487 199 4 1 3762 3960 830804025 830803828 4.900000e-89 339
23 TraesCS6B01G058900 chr3B 83.851 322 48 4 3442 3761 45180725 45181044 1.790000e-78 303
24 TraesCS6B01G058900 chr5B 96.252 1841 50 7 1938 3762 649832580 649830743 0.000000e+00 3000
25 TraesCS6B01G058900 chr5B 96.584 1581 38 5 2196 3762 684053714 684055292 0.000000e+00 2606
26 TraesCS6B01G058900 chr5B 94.319 1197 32 9 176 1349 649834922 649833739 0.000000e+00 1801
27 TraesCS6B01G058900 chr5B 97.189 498 14 0 1343 1840 649833211 649832714 0.000000e+00 843
28 TraesCS6B01G058900 chr4A 96.139 1839 52 8 1938 3761 621508406 621510240 0.000000e+00 2985
29 TraesCS6B01G058900 chr4A 91.553 1468 81 15 4 1447 578170841 578169393 0.000000e+00 1984
30 TraesCS6B01G058900 chr4A 97.487 597 14 1 1343 1939 621507384 621507979 0.000000e+00 1018
31 TraesCS6B01G058900 chr6A 94.121 1956 92 10 1 1939 115973997 115972048 0.000000e+00 2953
32 TraesCS6B01G058900 chr6A 93.360 1973 92 11 1 1939 537820086 537822053 0.000000e+00 2881
33 TraesCS6B01G058900 chr2A 93.823 1959 96 13 1 1939 707274600 707272647 0.000000e+00 2924
34 TraesCS6B01G058900 chr2A 82.873 362 58 4 3402 3761 65051238 65051597 4.940000e-84 322
35 TraesCS6B01G058900 chr1A 93.414 1974 91 10 1 1939 514559583 514561552 0.000000e+00 2889
36 TraesCS6B01G058900 chr1A 96.659 1646 39 5 1938 3569 589461677 589463320 0.000000e+00 2721
37 TraesCS6B01G058900 chr1A 94.370 1190 46 13 176 1349 589458947 589460131 0.000000e+00 1807
38 TraesCS6B01G058900 chr1A 97.655 597 13 1 1343 1939 589460659 589461254 0.000000e+00 1024
39 TraesCS6B01G058900 chr7B 91.630 1816 107 25 1938 3744 707278199 707276420 0.000000e+00 2470
40 TraesCS6B01G058900 chr7B 97.448 862 20 2 1078 1939 707279484 707278625 0.000000e+00 1469
41 TraesCS6B01G058900 chr7B 88.170 541 41 9 509 1039 656310061 656309534 1.210000e-174 623
42 TraesCS6B01G058900 chr2D 92.487 772 54 2 676 1447 72859789 72859022 0.000000e+00 1101
43 TraesCS6B01G058900 chr5D 97.990 199 3 1 3762 3960 368283693 368283496 1.050000e-90 344
44 TraesCS6B01G058900 chr5D 97.990 199 3 1 3762 3960 565284346 565284149 1.050000e-90 344


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G058900 chr6B 38963068 38967027 3959 False 7313.000000 7313 100.000000 1 3960 1 chr6B.!!$F1 3959
1 TraesCS6B01G058900 chr6B 68670101 68674260 4159 False 2887.000000 2924 94.681000 1 3721 2 chr6B.!!$F2 3720
2 TraesCS6B01G058900 chr6B 692806949 692811147 4198 False 2500.000000 2992 95.250500 1 3763 2 chr6B.!!$F3 3762
3 TraesCS6B01G058900 chr6B 49670587 49673756 3169 True 2227.000000 2250 95.921000 529 3277 2 chr6B.!!$R1 2748
4 TraesCS6B01G058900 chr6B 696363982 696368673 4691 True 1929.000000 2896 95.620333 1 3759 3 chr6B.!!$R2 3758
5 TraesCS6B01G058900 chr7A 552978283 552982456 4173 True 2510.000000 3029 95.380500 1 3763 2 chr7A.!!$R1 3762
6 TraesCS6B01G058900 chr3B 756241892 756244742 2850 True 2014.500000 3011 96.948000 1343 3761 2 chr3B.!!$R4 2418
7 TraesCS6B01G058900 chr3B 770345134 770346140 1006 False 1712.000000 1712 97.324000 2707 3715 1 chr3B.!!$F3 1008
8 TraesCS6B01G058900 chr3B 800824045 800824936 891 True 1170.000000 1170 90.667000 1 879 1 chr3B.!!$R2 878
9 TraesCS6B01G058900 chr5B 684053714 684055292 1578 False 2606.000000 2606 96.584000 2196 3762 1 chr5B.!!$F1 1566
10 TraesCS6B01G058900 chr5B 649830743 649834922 4179 True 1881.333333 3000 95.920000 176 3762 3 chr5B.!!$R1 3586
11 TraesCS6B01G058900 chr4A 621507384 621510240 2856 False 2001.500000 2985 96.813000 1343 3761 2 chr4A.!!$F1 2418
12 TraesCS6B01G058900 chr4A 578169393 578170841 1448 True 1984.000000 1984 91.553000 4 1447 1 chr4A.!!$R1 1443
13 TraesCS6B01G058900 chr6A 115972048 115973997 1949 True 2953.000000 2953 94.121000 1 1939 1 chr6A.!!$R1 1938
14 TraesCS6B01G058900 chr6A 537820086 537822053 1967 False 2881.000000 2881 93.360000 1 1939 1 chr6A.!!$F1 1938
15 TraesCS6B01G058900 chr2A 707272647 707274600 1953 True 2924.000000 2924 93.823000 1 1939 1 chr2A.!!$R1 1938
16 TraesCS6B01G058900 chr1A 514559583 514561552 1969 False 2889.000000 2889 93.414000 1 1939 1 chr1A.!!$F1 1938
17 TraesCS6B01G058900 chr1A 589458947 589463320 4373 False 1850.666667 2721 96.228000 176 3569 3 chr1A.!!$F2 3393
18 TraesCS6B01G058900 chr7B 707276420 707279484 3064 True 1969.500000 2470 94.539000 1078 3744 2 chr7B.!!$R2 2666
19 TraesCS6B01G058900 chr7B 656309534 656310061 527 True 623.000000 623 88.170000 509 1039 1 chr7B.!!$R1 530
20 TraesCS6B01G058900 chr2D 72859022 72859789 767 True 1101.000000 1101 92.487000 676 1447 1 chr2D.!!$R1 771

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
723 819 0.689080 ACACTCCCATGATCGCCTCT 60.689 55.000 0.0 0.0 0.00 3.69 F
1263 1375 0.322648 TTTGCTGCTGCTCTGCTCTA 59.677 50.000 17.0 0.0 39.95 2.43 F
2463 4549 1.009675 CTTGTCGTGCTTGTGCCAC 60.010 57.895 0.0 0.0 38.71 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2415 4501 1.405872 ATCACCCATGCGCATGAAAT 58.594 45.0 43.71 28.36 41.2 2.17 R
2919 5022 1.134438 AAAAGAGAAGGCGGAGGGGT 61.134 55.0 0.00 0.00 0.0 4.95 R
3792 5932 0.179018 ACAGACTTTGGGTGGTGCTC 60.179 55.0 0.00 0.00 0.0 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
723 819 0.689080 ACACTCCCATGATCGCCTCT 60.689 55.000 0.00 0.00 0.00 3.69
728 824 1.689243 CCCATGATCGCCTCTGTCCA 61.689 60.000 0.00 0.00 0.00 4.02
739 836 1.540267 CTCTGTCCACTCCGTCTTCT 58.460 55.000 0.00 0.00 0.00 2.85
850 947 2.186903 CGGCGGCTCAGGTACATT 59.813 61.111 7.61 0.00 0.00 2.71
1013 1110 0.911769 TCTCCGATGCCATCAAGGTT 59.088 50.000 5.40 0.00 40.61 3.50
1082 1179 1.584724 CCTACCTTCCTCACCCACAT 58.415 55.000 0.00 0.00 0.00 3.21
1263 1375 0.322648 TTTGCTGCTGCTCTGCTCTA 59.677 50.000 17.00 0.00 39.95 2.43
1623 2847 7.862274 ATCCATTGATGAACTAGAGTCCATA 57.138 36.000 0.00 0.00 0.00 2.74
1675 2900 3.683365 ATTTTGCTTGCTACCCCAAAG 57.317 42.857 0.00 0.00 0.00 2.77
1692 2917 7.574607 ACCCCAAAGATGTAGTAGAATTTAGG 58.425 38.462 0.00 0.00 0.00 2.69
1822 3047 2.808202 GCCTCTCTGTTTGCTCTGTTCA 60.808 50.000 0.00 0.00 0.00 3.18
2028 4114 4.281657 TCTGTTGAGGCTAGCATTCTCTA 58.718 43.478 18.24 8.19 0.00 2.43
2041 4127 7.066284 GCTAGCATTCTCTATTTGTTTTGGAGA 59.934 37.037 10.63 0.00 0.00 3.71
2352 4438 2.166664 GCATCGACTACAACCTCCTCTT 59.833 50.000 0.00 0.00 0.00 2.85
2384 4470 3.364006 TCTCCTACCTCTAGCTCCCTA 57.636 52.381 0.00 0.00 0.00 3.53
2463 4549 1.009675 CTTGTCGTGCTTGTGCCAC 60.010 57.895 0.00 0.00 38.71 5.01
2506 4592 8.932945 TTTACAGTGATGATGATTCAGAGTAC 57.067 34.615 0.00 0.00 34.73 2.73
2563 4649 2.660572 TGTGGTTGTTGGTTACTGCAT 58.339 42.857 0.00 0.00 0.00 3.96
2613 4699 8.749026 TTAATCTAGCTAGCTAGTAGTGTTGT 57.251 34.615 38.27 22.42 44.59 3.32
2638 4724 1.270907 AGCTAGTAGTGTTGGCAGCT 58.729 50.000 2.28 0.00 34.63 4.24
2821 4924 5.057149 CCCTTTGGTAGATGCAGTGTATAC 58.943 45.833 0.00 0.00 0.00 1.47
2892 4995 2.512515 GCCACCTCTGTCATCGCC 60.513 66.667 0.00 0.00 0.00 5.54
2935 5038 2.685380 CACCCCTCCGCCTTCTCT 60.685 66.667 0.00 0.00 0.00 3.10
3449 5566 5.772521 GCATAAATTTTCACCTATGCCGAT 58.227 37.500 9.30 0.00 40.38 4.18
3643 5782 3.243101 CGGTATGACAAGACTACGCTGAT 60.243 47.826 0.00 0.00 0.00 2.90
3764 5904 2.799371 CGAGTCCGGTAGTGAGGC 59.201 66.667 0.00 0.00 0.00 4.70
3765 5905 2.772691 CGAGTCCGGTAGTGAGGCC 61.773 68.421 0.00 0.00 0.00 5.19
3766 5906 2.754658 AGTCCGGTAGTGAGGCCG 60.755 66.667 0.00 0.00 46.80 6.13
3771 5911 3.782443 GGTAGTGAGGCCGGGGTG 61.782 72.222 2.18 0.00 0.00 4.61
3772 5912 3.782443 GTAGTGAGGCCGGGGTGG 61.782 72.222 2.18 0.00 42.50 4.61
3773 5913 4.000620 TAGTGAGGCCGGGGTGGA 62.001 66.667 2.18 0.00 42.00 4.02
3774 5914 3.549433 TAGTGAGGCCGGGGTGGAA 62.549 63.158 2.18 0.00 42.00 3.53
3775 5915 3.961414 GTGAGGCCGGGGTGGAAA 61.961 66.667 2.18 0.00 42.00 3.13
3776 5916 3.179339 TGAGGCCGGGGTGGAAAA 61.179 61.111 2.18 0.00 42.00 2.29
3777 5917 2.359011 GAGGCCGGGGTGGAAAAT 59.641 61.111 2.18 0.00 42.00 1.82
3778 5918 2.037208 AGGCCGGGGTGGAAAATG 59.963 61.111 2.18 0.00 42.00 2.32
3779 5919 3.770040 GGCCGGGGTGGAAAATGC 61.770 66.667 2.18 0.00 42.00 3.56
3780 5920 2.679996 GCCGGGGTGGAAAATGCT 60.680 61.111 2.18 0.00 42.00 3.79
3781 5921 1.379309 GCCGGGGTGGAAAATGCTA 60.379 57.895 2.18 0.00 42.00 3.49
3782 5922 0.755327 GCCGGGGTGGAAAATGCTAT 60.755 55.000 2.18 0.00 42.00 2.97
3783 5923 1.032014 CCGGGGTGGAAAATGCTATG 58.968 55.000 0.00 0.00 42.00 2.23
3784 5924 1.032014 CGGGGTGGAAAATGCTATGG 58.968 55.000 0.00 0.00 0.00 2.74
3785 5925 1.409521 CGGGGTGGAAAATGCTATGGA 60.410 52.381 0.00 0.00 0.00 3.41
3786 5926 2.310538 GGGGTGGAAAATGCTATGGAG 58.689 52.381 0.00 0.00 0.00 3.86
3787 5927 2.358195 GGGGTGGAAAATGCTATGGAGT 60.358 50.000 0.00 0.00 0.00 3.85
3788 5928 3.365472 GGGTGGAAAATGCTATGGAGTT 58.635 45.455 0.00 0.00 0.00 3.01
3789 5929 3.131046 GGGTGGAAAATGCTATGGAGTTG 59.869 47.826 0.00 0.00 0.00 3.16
3790 5930 3.763897 GGTGGAAAATGCTATGGAGTTGT 59.236 43.478 0.00 0.00 0.00 3.32
3791 5931 4.380867 GGTGGAAAATGCTATGGAGTTGTG 60.381 45.833 0.00 0.00 0.00 3.33
3792 5932 3.763360 TGGAAAATGCTATGGAGTTGTGG 59.237 43.478 0.00 0.00 0.00 4.17
3793 5933 4.016444 GGAAAATGCTATGGAGTTGTGGA 58.984 43.478 0.00 0.00 0.00 4.02
3794 5934 4.096984 GGAAAATGCTATGGAGTTGTGGAG 59.903 45.833 0.00 0.00 0.00 3.86
3795 5935 2.338577 ATGCTATGGAGTTGTGGAGC 57.661 50.000 0.00 0.00 0.00 4.70
3796 5936 0.983467 TGCTATGGAGTTGTGGAGCA 59.017 50.000 0.00 0.00 37.58 4.26
3797 5937 1.339055 TGCTATGGAGTTGTGGAGCAC 60.339 52.381 0.00 0.00 35.12 4.40
3798 5938 2.014068 GCTATGGAGTTGTGGAGCACC 61.014 57.143 0.00 0.00 32.73 5.01
3799 5939 1.278985 CTATGGAGTTGTGGAGCACCA 59.721 52.381 0.00 0.00 44.76 4.17
3807 5947 3.341270 TGGAGCACCACCCAAAGT 58.659 55.556 0.00 0.00 41.77 2.66
3808 5948 1.150536 TGGAGCACCACCCAAAGTC 59.849 57.895 0.00 0.00 41.77 3.01
3809 5949 1.352622 TGGAGCACCACCCAAAGTCT 61.353 55.000 0.00 0.00 41.77 3.24
3810 5950 0.890996 GGAGCACCACCCAAAGTCTG 60.891 60.000 0.00 0.00 35.97 3.51
3811 5951 0.179018 GAGCACCACCCAAAGTCTGT 60.179 55.000 0.00 0.00 0.00 3.41
3812 5952 0.466189 AGCACCACCCAAAGTCTGTG 60.466 55.000 0.00 0.00 33.36 3.66
3813 5953 0.751643 GCACCACCCAAAGTCTGTGT 60.752 55.000 0.00 0.00 32.97 3.72
3814 5954 1.024271 CACCACCCAAAGTCTGTGTG 58.976 55.000 0.00 0.00 0.00 3.82
3815 5955 0.623723 ACCACCCAAAGTCTGTGTGT 59.376 50.000 0.00 0.00 0.00 3.72
3816 5956 1.005450 ACCACCCAAAGTCTGTGTGTT 59.995 47.619 0.00 0.00 0.00 3.32
3817 5957 2.099405 CCACCCAAAGTCTGTGTGTTT 58.901 47.619 0.00 0.00 0.00 2.83
3818 5958 2.159254 CCACCCAAAGTCTGTGTGTTTG 60.159 50.000 0.00 0.00 0.00 2.93
3819 5959 1.476488 ACCCAAAGTCTGTGTGTTTGC 59.524 47.619 0.00 0.00 31.12 3.68
3820 5960 1.750778 CCCAAAGTCTGTGTGTTTGCT 59.249 47.619 0.00 0.00 31.12 3.91
3821 5961 2.166254 CCCAAAGTCTGTGTGTTTGCTT 59.834 45.455 0.00 0.00 31.12 3.91
3822 5962 3.181397 CCAAAGTCTGTGTGTTTGCTTG 58.819 45.455 0.00 0.00 31.12 4.01
3823 5963 3.181397 CAAAGTCTGTGTGTTTGCTTGG 58.819 45.455 0.00 0.00 0.00 3.61
3824 5964 2.418368 AGTCTGTGTGTTTGCTTGGA 57.582 45.000 0.00 0.00 0.00 3.53
3825 5965 2.722094 AGTCTGTGTGTTTGCTTGGAA 58.278 42.857 0.00 0.00 0.00 3.53
3826 5966 3.088532 AGTCTGTGTGTTTGCTTGGAAA 58.911 40.909 0.00 0.00 0.00 3.13
3852 5992 4.192000 CGAAGCACTGGCCACTAG 57.808 61.111 0.00 0.00 42.56 2.57
3853 5993 1.448540 CGAAGCACTGGCCACTAGG 60.449 63.158 0.00 0.00 42.56 3.02
3866 6006 3.616956 CCACTAGGCTGAACAAGATGA 57.383 47.619 0.00 0.00 0.00 2.92
3867 6007 3.942829 CCACTAGGCTGAACAAGATGAA 58.057 45.455 0.00 0.00 0.00 2.57
3868 6008 4.326826 CCACTAGGCTGAACAAGATGAAA 58.673 43.478 0.00 0.00 0.00 2.69
3869 6009 4.154918 CCACTAGGCTGAACAAGATGAAAC 59.845 45.833 0.00 0.00 0.00 2.78
3870 6010 3.997021 ACTAGGCTGAACAAGATGAAACG 59.003 43.478 0.00 0.00 0.00 3.60
3871 6011 1.537202 AGGCTGAACAAGATGAAACGC 59.463 47.619 0.00 0.00 0.00 4.84
3872 6012 1.401539 GGCTGAACAAGATGAAACGCC 60.402 52.381 0.00 0.00 0.00 5.68
3873 6013 1.266718 GCTGAACAAGATGAAACGCCA 59.733 47.619 0.00 0.00 0.00 5.69
3874 6014 2.095059 GCTGAACAAGATGAAACGCCAT 60.095 45.455 0.00 0.00 0.00 4.40
3875 6015 3.126858 GCTGAACAAGATGAAACGCCATA 59.873 43.478 0.00 0.00 0.00 2.74
3876 6016 4.201950 GCTGAACAAGATGAAACGCCATAT 60.202 41.667 0.00 0.00 0.00 1.78
3877 6017 5.233957 TGAACAAGATGAAACGCCATATG 57.766 39.130 0.00 0.00 0.00 1.78
3878 6018 4.096231 TGAACAAGATGAAACGCCATATGG 59.904 41.667 18.07 18.07 38.53 2.74
3879 6019 3.884895 ACAAGATGAAACGCCATATGGA 58.115 40.909 26.47 3.21 37.39 3.41
3880 6020 3.879295 ACAAGATGAAACGCCATATGGAG 59.121 43.478 26.47 24.36 41.06 3.86
3881 6021 3.131709 AGATGAAACGCCATATGGAGG 57.868 47.619 26.47 17.63 39.47 4.30
3882 6022 2.439507 AGATGAAACGCCATATGGAGGT 59.560 45.455 26.47 18.94 39.47 3.85
3884 6024 3.080300 TGAAACGCCATATGGAGGTTT 57.920 42.857 29.52 29.52 45.03 3.27
3885 6025 2.752354 TGAAACGCCATATGGAGGTTTG 59.248 45.455 32.11 16.31 45.03 2.93
3886 6026 2.799126 AACGCCATATGGAGGTTTGA 57.201 45.000 26.47 0.00 39.47 2.69
3887 6027 3.297134 AACGCCATATGGAGGTTTGAT 57.703 42.857 26.47 1.84 39.47 2.57
3888 6028 2.575532 ACGCCATATGGAGGTTTGATG 58.424 47.619 26.47 5.12 39.47 3.07
3889 6029 1.881973 CGCCATATGGAGGTTTGATGG 59.118 52.381 26.47 0.00 40.11 3.51
3890 6030 2.487086 CGCCATATGGAGGTTTGATGGA 60.487 50.000 26.47 0.00 39.61 3.41
3891 6031 3.152341 GCCATATGGAGGTTTGATGGAG 58.848 50.000 26.47 0.00 39.61 3.86
3892 6032 3.435601 GCCATATGGAGGTTTGATGGAGT 60.436 47.826 26.47 0.00 39.61 3.85
3893 6033 4.139786 CCATATGGAGGTTTGATGGAGTG 58.860 47.826 17.49 0.00 39.61 3.51
3894 6034 4.385643 CCATATGGAGGTTTGATGGAGTGT 60.386 45.833 17.49 0.00 39.61 3.55
3895 6035 2.566833 TGGAGGTTTGATGGAGTGTG 57.433 50.000 0.00 0.00 0.00 3.82
3896 6036 1.168714 GGAGGTTTGATGGAGTGTGC 58.831 55.000 0.00 0.00 0.00 4.57
3897 6037 1.545428 GGAGGTTTGATGGAGTGTGCA 60.545 52.381 0.00 0.00 0.00 4.57
3898 6038 1.537202 GAGGTTTGATGGAGTGTGCAC 59.463 52.381 10.75 10.75 0.00 4.57
3899 6039 0.598065 GGTTTGATGGAGTGTGCACC 59.402 55.000 15.69 5.76 0.00 5.01
3900 6040 1.317613 GTTTGATGGAGTGTGCACCA 58.682 50.000 15.69 5.12 39.60 4.17
3901 6041 1.888512 GTTTGATGGAGTGTGCACCAT 59.111 47.619 15.69 10.57 46.41 3.55
3902 6042 2.291209 TTGATGGAGTGTGCACCATT 57.709 45.000 15.69 0.00 44.32 3.16
3903 6043 2.291209 TGATGGAGTGTGCACCATTT 57.709 45.000 15.69 0.00 44.32 2.32
3904 6044 1.887854 TGATGGAGTGTGCACCATTTG 59.112 47.619 15.69 0.00 44.32 2.32
3905 6045 1.888512 GATGGAGTGTGCACCATTTGT 59.111 47.619 15.69 0.00 44.32 2.83
3906 6046 1.614903 ATGGAGTGTGCACCATTTGTG 59.385 47.619 15.69 0.00 42.20 3.33
3907 6047 0.314935 GGAGTGTGCACCATTTGTGG 59.685 55.000 15.69 0.00 45.55 4.17
3908 6048 1.317613 GAGTGTGCACCATTTGTGGA 58.682 50.000 15.69 0.00 45.55 4.02
3912 6052 2.730990 TGCACCATTTGTGGACAGG 58.269 52.632 0.73 0.00 45.55 4.00
3913 6053 0.184692 TGCACCATTTGTGGACAGGA 59.815 50.000 0.73 0.00 45.55 3.86
3914 6054 1.327303 GCACCATTTGTGGACAGGAA 58.673 50.000 0.73 0.00 45.55 3.36
3915 6055 1.270550 GCACCATTTGTGGACAGGAAG 59.729 52.381 0.73 0.00 45.55 3.46
3916 6056 2.862541 CACCATTTGTGGACAGGAAGA 58.137 47.619 0.73 0.00 41.52 2.87
3917 6057 3.424703 CACCATTTGTGGACAGGAAGAT 58.575 45.455 0.73 0.00 41.52 2.40
3918 6058 3.192001 CACCATTTGTGGACAGGAAGATG 59.808 47.826 0.73 0.00 41.52 2.90
3919 6059 3.074390 ACCATTTGTGGACAGGAAGATGA 59.926 43.478 0.73 0.00 0.00 2.92
3920 6060 4.081406 CCATTTGTGGACAGGAAGATGAA 58.919 43.478 0.00 0.00 0.00 2.57
3921 6061 4.708421 CCATTTGTGGACAGGAAGATGAAT 59.292 41.667 0.00 0.00 0.00 2.57
3922 6062 5.163581 CCATTTGTGGACAGGAAGATGAATC 60.164 44.000 0.00 0.00 0.00 2.52
3923 6063 4.639078 TTGTGGACAGGAAGATGAATCA 57.361 40.909 0.00 0.00 0.00 2.57
3924 6064 4.212143 TGTGGACAGGAAGATGAATCAG 57.788 45.455 0.00 0.00 0.00 2.90
3925 6065 3.584406 TGTGGACAGGAAGATGAATCAGT 59.416 43.478 0.00 0.00 0.00 3.41
3926 6066 4.042062 TGTGGACAGGAAGATGAATCAGTT 59.958 41.667 0.00 0.00 0.00 3.16
3927 6067 4.633565 GTGGACAGGAAGATGAATCAGTTC 59.366 45.833 0.00 0.00 34.85 3.01
3939 6079 3.619929 TGAATCAGTTCATCATGCACTCG 59.380 43.478 0.00 0.00 39.36 4.18
3940 6080 2.749280 TCAGTTCATCATGCACTCGT 57.251 45.000 0.00 0.00 0.00 4.18
3941 6081 3.866883 TCAGTTCATCATGCACTCGTA 57.133 42.857 0.00 0.00 0.00 3.43
3942 6082 3.511699 TCAGTTCATCATGCACTCGTAC 58.488 45.455 0.00 0.00 0.00 3.67
3943 6083 2.279921 CAGTTCATCATGCACTCGTACG 59.720 50.000 9.53 9.53 0.00 3.67
3944 6084 1.005975 GTTCATCATGCACTCGTACGC 60.006 52.381 11.24 0.00 0.00 4.42
3945 6085 0.455815 TCATCATGCACTCGTACGCT 59.544 50.000 11.24 0.00 0.00 5.07
3946 6086 0.573987 CATCATGCACTCGTACGCTG 59.426 55.000 11.24 9.33 0.00 5.18
3947 6087 1.148157 ATCATGCACTCGTACGCTGC 61.148 55.000 23.31 23.31 0.00 5.25
3948 6088 2.509336 ATGCACTCGTACGCTGCC 60.509 61.111 25.58 13.88 0.00 4.85
3949 6089 4.735132 TGCACTCGTACGCTGCCC 62.735 66.667 25.58 9.55 0.00 5.36
3951 6091 4.814294 CACTCGTACGCTGCCCCC 62.814 72.222 11.24 0.00 0.00 5.40
3953 6093 4.814294 CTCGTACGCTGCCCCCAC 62.814 72.222 11.24 0.00 0.00 4.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
396 409 2.347114 CAGCCATCCACGTCACCA 59.653 61.111 0.00 0.00 0.00 4.17
512 529 4.847444 GAGGGAAGCGGGCTGAGC 62.847 72.222 0.00 0.00 0.00 4.26
694 790 2.594592 GGGAGTGTGCTTGGCGTT 60.595 61.111 0.00 0.00 0.00 4.84
728 824 3.646787 TCGGAAGAGAAGACGGAGT 57.353 52.632 0.00 0.00 39.01 3.85
739 836 0.098905 CGACGAATCTGCTCGGAAGA 59.901 55.000 0.00 0.00 43.22 2.87
1013 1110 1.433592 GAATAGGAGAGGGAGGGGCTA 59.566 57.143 0.00 0.00 0.00 3.93
1491 2697 7.192913 CACAAACACAAACTTCAGTGCTATAA 58.807 34.615 0.00 0.00 39.30 0.98
1623 2847 2.749621 GCAGAGTCAATTCAAACCGGAT 59.250 45.455 9.46 0.00 0.00 4.18
1692 2917 6.530019 AATCCAACCAGACCAATTCATAAC 57.470 37.500 0.00 0.00 0.00 1.89
1822 3047 3.769369 CTGGATCCGGCAGCAGCAT 62.769 63.158 7.89 0.00 44.61 3.79
1994 4080 4.828939 AGCCTCAACAGAATCAATCACAAA 59.171 37.500 0.00 0.00 0.00 2.83
2028 4114 4.408596 ACATGGTTGGTCTCCAAAACAAAT 59.591 37.500 2.65 0.00 45.73 2.32
2352 4438 1.409802 GGTAGGAGATGGACTCACCGA 60.410 57.143 0.00 0.00 46.54 4.69
2415 4501 1.405872 ATCACCCATGCGCATGAAAT 58.594 45.000 43.71 28.36 41.20 2.17
2463 4549 8.759641 CACTGTAAATAGGAATGATCTTTCTCG 58.240 37.037 17.92 0.00 0.00 4.04
2506 4592 5.695851 AGAGCAGAATTTAACAAGTGTGG 57.304 39.130 0.00 0.00 0.00 4.17
2563 4649 6.181908 ACACCAACAGTTAACAAAACCTAGA 58.818 36.000 8.61 0.00 0.00 2.43
2613 4699 2.427453 GCCAACACTACTAGCTAGCTGA 59.573 50.000 27.68 11.24 0.00 4.26
2638 4724 9.710900 CAATTACACATATGGATGAACTAGCTA 57.289 33.333 7.80 0.00 36.48 3.32
2849 4952 5.647658 TGCAGTCAGTATAATGAACCAAAGG 59.352 40.000 4.12 0.00 0.00 3.11
2919 5022 1.134438 AAAAGAGAAGGCGGAGGGGT 61.134 55.000 0.00 0.00 0.00 4.95
2935 5038 7.394016 TCTAAGAATCCACTACAGCATCAAAA 58.606 34.615 0.00 0.00 0.00 2.44
3643 5782 2.767445 CCCGTCGGCGTAGATCACA 61.767 63.158 9.28 0.00 36.15 3.58
3737 5877 2.125326 CCGGACTCGCCACCTATGA 61.125 63.158 0.00 0.00 35.94 2.15
3764 5904 1.032014 CATAGCATTTTCCACCCCGG 58.968 55.000 0.00 0.00 0.00 5.73
3765 5905 1.032014 CCATAGCATTTTCCACCCCG 58.968 55.000 0.00 0.00 0.00 5.73
3766 5906 2.310538 CTCCATAGCATTTTCCACCCC 58.689 52.381 0.00 0.00 0.00 4.95
3767 5907 3.018423 ACTCCATAGCATTTTCCACCC 57.982 47.619 0.00 0.00 0.00 4.61
3768 5908 3.763897 ACAACTCCATAGCATTTTCCACC 59.236 43.478 0.00 0.00 0.00 4.61
3769 5909 4.380867 CCACAACTCCATAGCATTTTCCAC 60.381 45.833 0.00 0.00 0.00 4.02
3770 5910 3.763360 CCACAACTCCATAGCATTTTCCA 59.237 43.478 0.00 0.00 0.00 3.53
3771 5911 4.016444 TCCACAACTCCATAGCATTTTCC 58.984 43.478 0.00 0.00 0.00 3.13
3772 5912 4.439289 GCTCCACAACTCCATAGCATTTTC 60.439 45.833 0.00 0.00 0.00 2.29
3773 5913 3.445096 GCTCCACAACTCCATAGCATTTT 59.555 43.478 0.00 0.00 0.00 1.82
3774 5914 3.019564 GCTCCACAACTCCATAGCATTT 58.980 45.455 0.00 0.00 0.00 2.32
3775 5915 2.025981 TGCTCCACAACTCCATAGCATT 60.026 45.455 0.00 0.00 35.20 3.56
3776 5916 1.561076 TGCTCCACAACTCCATAGCAT 59.439 47.619 0.00 0.00 35.20 3.79
3777 5917 0.983467 TGCTCCACAACTCCATAGCA 59.017 50.000 0.00 0.00 37.62 3.49
3778 5918 1.373570 GTGCTCCACAACTCCATAGC 58.626 55.000 0.00 0.00 34.08 2.97
3779 5919 1.278985 TGGTGCTCCACAACTCCATAG 59.721 52.381 2.64 0.00 39.03 2.23
3780 5920 1.357137 TGGTGCTCCACAACTCCATA 58.643 50.000 2.64 0.00 39.03 2.74
3781 5921 2.154139 TGGTGCTCCACAACTCCAT 58.846 52.632 2.64 0.00 39.03 3.41
3782 5922 3.654021 TGGTGCTCCACAACTCCA 58.346 55.556 2.64 0.00 39.03 3.86
3790 5930 1.150536 GACTTTGGGTGGTGCTCCA 59.849 57.895 2.64 2.64 42.05 3.86
3791 5931 0.890996 CAGACTTTGGGTGGTGCTCC 60.891 60.000 0.00 0.00 0.00 4.70
3792 5932 0.179018 ACAGACTTTGGGTGGTGCTC 60.179 55.000 0.00 0.00 0.00 4.26
3793 5933 0.466189 CACAGACTTTGGGTGGTGCT 60.466 55.000 0.00 0.00 0.00 4.40
3794 5934 0.751643 ACACAGACTTTGGGTGGTGC 60.752 55.000 0.00 0.00 43.38 5.01
3795 5935 3.494850 ACACAGACTTTGGGTGGTG 57.505 52.632 0.00 0.00 43.38 4.17
3799 5939 1.476488 GCAAACACACAGACTTTGGGT 59.524 47.619 0.00 0.00 46.94 4.51
3800 5940 1.750778 AGCAAACACACAGACTTTGGG 59.249 47.619 0.00 0.00 35.82 4.12
3801 5941 3.181397 CAAGCAAACACACAGACTTTGG 58.819 45.455 0.00 0.00 0.00 3.28
3802 5942 3.119531 TCCAAGCAAACACACAGACTTTG 60.120 43.478 0.00 0.00 0.00 2.77
3803 5943 3.088532 TCCAAGCAAACACACAGACTTT 58.911 40.909 0.00 0.00 0.00 2.66
3804 5944 2.722094 TCCAAGCAAACACACAGACTT 58.278 42.857 0.00 0.00 0.00 3.01
3805 5945 2.418368 TCCAAGCAAACACACAGACT 57.582 45.000 0.00 0.00 0.00 3.24
3806 5946 3.438360 CTTTCCAAGCAAACACACAGAC 58.562 45.455 0.00 0.00 0.00 3.51
3807 5947 3.781079 CTTTCCAAGCAAACACACAGA 57.219 42.857 0.00 0.00 0.00 3.41
3819 5959 1.396301 CTTCGCTAGCAGCTTTCCAAG 59.604 52.381 16.45 0.00 39.60 3.61
3820 5960 1.442769 CTTCGCTAGCAGCTTTCCAA 58.557 50.000 16.45 0.00 39.60 3.53
3821 5961 3.143675 CTTCGCTAGCAGCTTTCCA 57.856 52.632 16.45 0.00 39.60 3.53
3831 5971 2.103042 GTGGCCAGTGCTTCGCTAG 61.103 63.158 5.11 0.00 37.74 3.42
3832 5972 1.254975 TAGTGGCCAGTGCTTCGCTA 61.255 55.000 23.96 7.35 37.74 4.26
3833 5973 2.513026 CTAGTGGCCAGTGCTTCGCT 62.513 60.000 23.96 8.43 37.74 4.93
3834 5974 2.047274 TAGTGGCCAGTGCTTCGC 60.047 61.111 23.96 0.00 37.74 4.70
3835 5975 1.448540 CCTAGTGGCCAGTGCTTCG 60.449 63.158 23.96 6.07 37.74 3.79
3836 5976 4.625800 CCTAGTGGCCAGTGCTTC 57.374 61.111 23.96 1.34 37.74 3.86
3846 5986 3.616956 TCATCTTGTTCAGCCTAGTGG 57.383 47.619 0.00 0.00 0.00 4.00
3847 5987 4.143030 CGTTTCATCTTGTTCAGCCTAGTG 60.143 45.833 0.00 0.00 0.00 2.74
3848 5988 3.997021 CGTTTCATCTTGTTCAGCCTAGT 59.003 43.478 0.00 0.00 0.00 2.57
3849 5989 3.181516 GCGTTTCATCTTGTTCAGCCTAG 60.182 47.826 0.00 0.00 0.00 3.02
3850 5990 2.742053 GCGTTTCATCTTGTTCAGCCTA 59.258 45.455 0.00 0.00 0.00 3.93
3851 5991 1.537202 GCGTTTCATCTTGTTCAGCCT 59.463 47.619 0.00 0.00 0.00 4.58
3852 5992 1.401539 GGCGTTTCATCTTGTTCAGCC 60.402 52.381 0.00 0.00 35.00 4.85
3853 5993 1.266718 TGGCGTTTCATCTTGTTCAGC 59.733 47.619 0.00 0.00 0.00 4.26
3854 5994 3.837213 ATGGCGTTTCATCTTGTTCAG 57.163 42.857 0.00 0.00 0.00 3.02
3855 5995 4.096231 CCATATGGCGTTTCATCTTGTTCA 59.904 41.667 9.29 0.00 0.00 3.18
3856 5996 4.335315 TCCATATGGCGTTTCATCTTGTTC 59.665 41.667 17.58 0.00 34.44 3.18
3857 5997 4.269183 TCCATATGGCGTTTCATCTTGTT 58.731 39.130 17.58 0.00 34.44 2.83
3858 5998 3.879295 CTCCATATGGCGTTTCATCTTGT 59.121 43.478 17.58 0.00 34.44 3.16
3859 5999 3.251729 CCTCCATATGGCGTTTCATCTTG 59.748 47.826 17.58 0.00 34.44 3.02
3860 6000 3.117888 ACCTCCATATGGCGTTTCATCTT 60.118 43.478 17.58 0.00 34.44 2.40
3861 6001 2.439507 ACCTCCATATGGCGTTTCATCT 59.560 45.455 17.58 0.00 34.44 2.90
3862 6002 2.851195 ACCTCCATATGGCGTTTCATC 58.149 47.619 17.58 0.00 34.44 2.92
3863 6003 3.297134 AACCTCCATATGGCGTTTCAT 57.703 42.857 17.58 0.00 34.44 2.57
3864 6004 2.752354 CAAACCTCCATATGGCGTTTCA 59.248 45.455 25.30 7.39 36.15 2.69
3865 6005 3.013921 TCAAACCTCCATATGGCGTTTC 58.986 45.455 25.30 0.00 36.15 2.78
3866 6006 3.080300 TCAAACCTCCATATGGCGTTT 57.920 42.857 23.65 23.65 37.66 3.60
3867 6007 2.799126 TCAAACCTCCATATGGCGTT 57.201 45.000 17.58 17.21 34.44 4.84
3868 6008 2.575532 CATCAAACCTCCATATGGCGT 58.424 47.619 17.58 12.25 34.44 5.68
3869 6009 1.881973 CCATCAAACCTCCATATGGCG 59.118 52.381 17.58 11.10 31.39 5.69
3870 6010 3.152341 CTCCATCAAACCTCCATATGGC 58.848 50.000 17.58 0.00 37.58 4.40
3871 6011 4.139786 CACTCCATCAAACCTCCATATGG 58.860 47.826 16.25 16.25 38.76 2.74
3872 6012 4.577693 CACACTCCATCAAACCTCCATATG 59.422 45.833 0.00 0.00 0.00 1.78
3873 6013 4.785301 CACACTCCATCAAACCTCCATAT 58.215 43.478 0.00 0.00 0.00 1.78
3874 6014 3.622206 GCACACTCCATCAAACCTCCATA 60.622 47.826 0.00 0.00 0.00 2.74
3875 6015 2.881403 GCACACTCCATCAAACCTCCAT 60.881 50.000 0.00 0.00 0.00 3.41
3876 6016 1.545428 GCACACTCCATCAAACCTCCA 60.545 52.381 0.00 0.00 0.00 3.86
3877 6017 1.168714 GCACACTCCATCAAACCTCC 58.831 55.000 0.00 0.00 0.00 4.30
3878 6018 1.537202 GTGCACACTCCATCAAACCTC 59.463 52.381 13.17 0.00 0.00 3.85
3879 6019 1.609208 GTGCACACTCCATCAAACCT 58.391 50.000 13.17 0.00 0.00 3.50
3880 6020 0.598065 GGTGCACACTCCATCAAACC 59.402 55.000 20.43 0.00 0.00 3.27
3881 6021 1.317613 TGGTGCACACTCCATCAAAC 58.682 50.000 20.43 0.00 34.53 2.93
3882 6022 2.291209 ATGGTGCACACTCCATCAAA 57.709 45.000 20.43 0.00 44.98 2.69
3883 6023 2.291209 AATGGTGCACACTCCATCAA 57.709 45.000 20.43 0.00 46.91 2.57
3884 6024 1.887854 CAAATGGTGCACACTCCATCA 59.112 47.619 20.43 5.62 46.91 3.07
3885 6025 1.888512 ACAAATGGTGCACACTCCATC 59.111 47.619 20.43 0.00 46.91 3.51
3887 6027 1.031235 CACAAATGGTGCACACTCCA 58.969 50.000 20.43 7.82 43.32 3.86
3888 6028 0.314935 CCACAAATGGTGCACACTCC 59.685 55.000 20.43 0.83 46.50 3.85
3889 6029 3.585475 TGTCCACAAATGGTGCACACTC 61.585 50.000 20.43 1.36 43.15 3.51
3890 6030 1.684558 TGTCCACAAATGGTGCACACT 60.685 47.619 20.43 1.25 43.15 3.55
3891 6031 0.743688 TGTCCACAAATGGTGCACAC 59.256 50.000 20.43 8.79 43.15 3.82
3892 6032 1.031235 CTGTCCACAAATGGTGCACA 58.969 50.000 20.43 5.24 45.75 4.57
3899 6039 5.416639 TGATTCATCTTCCTGTCCACAAATG 59.583 40.000 0.00 0.00 0.00 2.32
3900 6040 5.573219 TGATTCATCTTCCTGTCCACAAAT 58.427 37.500 0.00 0.00 0.00 2.32
3901 6041 4.984295 TGATTCATCTTCCTGTCCACAAA 58.016 39.130 0.00 0.00 0.00 2.83
3902 6042 4.042062 ACTGATTCATCTTCCTGTCCACAA 59.958 41.667 0.00 0.00 0.00 3.33
3903 6043 3.584406 ACTGATTCATCTTCCTGTCCACA 59.416 43.478 0.00 0.00 0.00 4.17
3904 6044 4.213564 ACTGATTCATCTTCCTGTCCAC 57.786 45.455 0.00 0.00 0.00 4.02
3905 6045 4.286808 TGAACTGATTCATCTTCCTGTCCA 59.713 41.667 0.00 0.00 40.01 4.02
3906 6046 4.836825 TGAACTGATTCATCTTCCTGTCC 58.163 43.478 0.00 0.00 40.01 4.02
3918 6058 3.620374 ACGAGTGCATGATGAACTGATTC 59.380 43.478 11.58 0.00 36.08 2.52
3919 6059 3.603532 ACGAGTGCATGATGAACTGATT 58.396 40.909 11.58 0.00 36.08 2.57
3920 6060 3.257469 ACGAGTGCATGATGAACTGAT 57.743 42.857 11.58 0.00 36.08 2.90
3921 6061 2.749280 ACGAGTGCATGATGAACTGA 57.251 45.000 11.58 0.00 36.08 3.41
3922 6062 2.279921 CGTACGAGTGCATGATGAACTG 59.720 50.000 11.58 6.16 36.08 3.16
3923 6063 2.530177 CGTACGAGTGCATGATGAACT 58.470 47.619 10.44 5.58 39.47 3.01
3924 6064 1.005975 GCGTACGAGTGCATGATGAAC 60.006 52.381 21.65 0.00 0.00 3.18
3925 6065 1.135112 AGCGTACGAGTGCATGATGAA 60.135 47.619 21.65 0.00 0.00 2.57
3926 6066 0.455815 AGCGTACGAGTGCATGATGA 59.544 50.000 21.65 0.00 0.00 2.92
3927 6067 0.573987 CAGCGTACGAGTGCATGATG 59.426 55.000 21.65 0.00 0.00 3.07
3928 6068 1.148157 GCAGCGTACGAGTGCATGAT 61.148 55.000 28.15 0.00 37.16 2.45
3929 6069 1.805539 GCAGCGTACGAGTGCATGA 60.806 57.895 28.15 0.00 37.16 3.07
3930 6070 2.697425 GCAGCGTACGAGTGCATG 59.303 61.111 28.15 14.33 37.16 4.06
3931 6071 2.509336 GGCAGCGTACGAGTGCAT 60.509 61.111 31.50 6.56 39.05 3.96
3932 6072 4.735132 GGGCAGCGTACGAGTGCA 62.735 66.667 31.50 0.00 39.05 4.57
3934 6074 4.814294 GGGGGCAGCGTACGAGTG 62.814 72.222 21.65 16.16 0.00 3.51
3936 6076 4.814294 GTGGGGGCAGCGTACGAG 62.814 72.222 21.65 11.72 0.00 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.