Multiple sequence alignment - TraesCS6B01G058700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G058700 chr6B 100.000 3431 0 0 1 3431 38924621 38928051 0.000000e+00 6336.0
1 TraesCS6B01G058700 chr6B 100.000 259 0 0 3821 4079 38928441 38928699 2.850000e-131 479.0
2 TraesCS6B01G058700 chr6B 75.210 476 110 8 2111 2582 39062938 39062467 6.860000e-53 219.0
3 TraesCS6B01G058700 chr6B 94.545 55 2 1 71 125 126806178 126806125 2.610000e-12 84.2
4 TraesCS6B01G058700 chr6A 94.472 2840 99 19 614 3431 22546654 22549457 0.000000e+00 4322.0
5 TraesCS6B01G058700 chr6A 91.981 212 17 0 1 212 22535240 22535451 8.570000e-77 298.0
6 TraesCS6B01G058700 chr6A 76.101 477 104 10 2111 2582 22643615 22644086 1.470000e-59 241.0
7 TraesCS6B01G058700 chr6A 99.187 123 1 0 3957 4079 72872000 72871878 5.310000e-54 222.0
8 TraesCS6B01G058700 chr6A 99.180 122 1 0 3958 4079 158454370 158454249 1.910000e-53 220.0
9 TraesCS6B01G058700 chr6A 85.385 130 10 5 3821 3941 22549488 22549617 4.280000e-25 126.0
10 TraesCS6B01G058700 chr6D 96.651 2538 50 11 614 3141 24022110 24024622 0.000000e+00 4183.0
11 TraesCS6B01G058700 chr6D 75.000 476 111 8 2111 2582 24199224 24198753 3.190000e-51 213.0
12 TraesCS6B01G058700 chr6D 84.158 202 14 7 3153 3342 24025607 24025802 3.240000e-41 180.0
13 TraesCS6B01G058700 chr2A 73.503 1653 374 51 1401 3030 680261995 680263606 5.920000e-158 568.0
14 TraesCS6B01G058700 chr2A 92.982 57 4 0 1528 1584 758881632 758881688 2.610000e-12 84.2
15 TraesCS6B01G058700 chr2D 73.382 1653 367 57 1401 3030 537929112 537930714 7.710000e-152 547.0
16 TraesCS6B01G058700 chr2D 94.737 57 3 0 1528 1584 629074954 629075010 5.620000e-14 89.8
17 TraesCS6B01G058700 chr7A 97.101 138 3 1 3942 4079 621498617 621498753 8.820000e-57 231.0
18 TraesCS6B01G058700 chr7A 100.000 122 0 0 3958 4079 621503836 621503957 4.100000e-55 226.0
19 TraesCS6B01G058700 chr5B 100.000 122 0 0 3958 4079 266010620 266010741 4.100000e-55 226.0
20 TraesCS6B01G058700 chr5B 97.710 131 1 1 3951 4079 266008366 266008496 1.480000e-54 224.0
21 TraesCS6B01G058700 chr5B 93.243 148 7 3 149 294 635101344 635101198 8.880000e-52 215.0
22 TraesCS6B01G058700 chr1D 94.521 146 8 0 149 294 468835526 468835671 4.100000e-55 226.0
23 TraesCS6B01G058700 chr3A 93.377 151 9 1 149 298 38617495 38617345 5.310000e-54 222.0
24 TraesCS6B01G058700 chr3A 91.275 149 10 2 149 294 647688429 647688577 2.490000e-47 200.0
25 TraesCS6B01G058700 chr5A 99.180 122 1 0 3958 4079 701580383 701580504 1.910000e-53 220.0
26 TraesCS6B01G058700 chr2B 98.413 126 1 1 3955 4079 88919522 88919647 1.910000e-53 220.0
27 TraesCS6B01G058700 chr2B 75.210 476 108 10 1401 1871 640599468 640599938 2.470000e-52 217.0
28 TraesCS6B01G058700 chr1A 99.180 122 1 0 3958 4079 415574984 415574863 1.910000e-53 220.0
29 TraesCS6B01G058700 chr4B 94.545 55 3 0 71 125 520933723 520933669 7.260000e-13 86.1
30 TraesCS6B01G058700 chr4A 94.231 52 3 0 74 125 669675198 669675147 3.380000e-11 80.5
31 TraesCS6B01G058700 chr4D 94.000 50 3 0 71 120 425281013 425280964 4.370000e-10 76.8
32 TraesCS6B01G058700 chr3D 93.617 47 3 0 74 120 8329154 8329200 2.030000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G058700 chr6B 38924621 38928699 4078 False 3407.5 6336 100.0000 1 4079 2 chr6B.!!$F1 4078
1 TraesCS6B01G058700 chr6A 22546654 22549617 2963 False 2224.0 4322 89.9285 614 3941 2 chr6A.!!$F3 3327
2 TraesCS6B01G058700 chr6D 24022110 24025802 3692 False 2181.5 4183 90.4045 614 3342 2 chr6D.!!$F1 2728
3 TraesCS6B01G058700 chr2A 680261995 680263606 1611 False 568.0 568 73.5030 1401 3030 1 chr2A.!!$F1 1629
4 TraesCS6B01G058700 chr2D 537929112 537930714 1602 False 547.0 547 73.3820 1401 3030 1 chr2D.!!$F1 1629
5 TraesCS6B01G058700 chr5B 266008366 266010741 2375 False 225.0 226 98.8550 3951 4079 2 chr5B.!!$F1 128

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
97 98 0.031449 GTGGCTAGATCTCAGTCGGC 59.969 60.0 0.00 0.00 0.00 5.54 F
98 99 0.106469 TGGCTAGATCTCAGTCGGCT 60.106 55.0 0.00 0.00 0.00 5.52 F
99 100 0.313672 GGCTAGATCTCAGTCGGCTG 59.686 60.0 11.77 11.77 43.87 4.85 F
997 999 0.371301 TCGTGAAGATCGACGTACGG 59.629 55.0 21.06 2.32 42.82 4.02 F
1008 1010 0.804933 GACGTACGGCAATGGAGTCC 60.805 60.0 18.23 0.73 0.00 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1137 1139 0.034186 TGATCTTCATGGCCACCACC 60.034 55.000 8.16 0.00 35.80 4.61 R
1719 1721 0.615850 AGAAGAAGCCCTGCCTGTAC 59.384 55.000 0.00 0.00 0.00 2.90 R
2257 2259 1.364171 GCGCCATGAGGTAGACGAT 59.636 57.895 0.00 0.00 37.19 3.73 R
2311 2313 1.429463 GACAGGTTCATGTCGGTGAC 58.571 55.000 2.03 0.00 40.18 3.67 R
3222 4211 8.375506 ACATAACCAAGTCTCACTGAGATTTAA 58.624 33.333 14.57 4.25 40.98 1.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.370414 CTTCCGCGGCAACACAAAG 60.370 57.895 23.51 13.43 0.00 2.77
20 21 3.477224 TTCCGCGGCAACACAAAGC 62.477 57.895 23.51 0.00 0.00 3.51
40 41 3.944087 GCCTAGGCTATAGGAACCAATG 58.056 50.000 27.17 0.00 36.85 2.82
41 42 3.328050 GCCTAGGCTATAGGAACCAATGT 59.672 47.826 27.17 0.00 36.85 2.71
42 43 4.202472 GCCTAGGCTATAGGAACCAATGTT 60.202 45.833 27.17 0.00 36.85 2.71
43 44 5.308825 CCTAGGCTATAGGAACCAATGTTG 58.691 45.833 9.25 0.00 36.85 3.33
44 45 4.862641 AGGCTATAGGAACCAATGTTGT 57.137 40.909 1.04 0.00 33.97 3.32
45 46 5.968676 AGGCTATAGGAACCAATGTTGTA 57.031 39.130 1.04 0.00 33.97 2.41
46 47 6.321821 AGGCTATAGGAACCAATGTTGTAA 57.678 37.500 1.04 0.00 33.97 2.41
47 48 6.357367 AGGCTATAGGAACCAATGTTGTAAG 58.643 40.000 1.04 0.00 33.97 2.34
50 51 7.937394 GGCTATAGGAACCAATGTTGTAAGTAT 59.063 37.037 1.04 0.00 33.97 2.12
51 52 9.338622 GCTATAGGAACCAATGTTGTAAGTATT 57.661 33.333 1.04 0.00 33.97 1.89
53 54 6.267496 AGGAACCAATGTTGTAAGTATTGC 57.733 37.500 0.00 0.00 33.97 3.56
54 55 5.092781 GGAACCAATGTTGTAAGTATTGCG 58.907 41.667 0.00 0.00 33.97 4.85
55 56 5.335348 GGAACCAATGTTGTAAGTATTGCGT 60.335 40.000 0.00 0.00 33.97 5.24
56 57 6.128227 GGAACCAATGTTGTAAGTATTGCGTA 60.128 38.462 0.00 0.00 33.97 4.42
57 58 6.995511 ACCAATGTTGTAAGTATTGCGTAT 57.004 33.333 0.00 0.00 31.30 3.06
58 59 6.781138 ACCAATGTTGTAAGTATTGCGTATG 58.219 36.000 0.00 0.00 31.30 2.39
59 60 5.681105 CCAATGTTGTAAGTATTGCGTATGC 59.319 40.000 0.00 0.00 43.20 3.14
60 61 4.868450 TGTTGTAAGTATTGCGTATGCC 57.132 40.909 4.05 0.00 41.78 4.40
61 62 3.623960 TGTTGTAAGTATTGCGTATGCCC 59.376 43.478 4.05 0.00 41.78 5.36
63 64 2.170817 TGTAAGTATTGCGTATGCCCCA 59.829 45.455 4.05 0.00 41.78 4.96
64 65 2.656947 AAGTATTGCGTATGCCCCAT 57.343 45.000 4.05 0.00 41.78 4.00
65 66 2.656947 AGTATTGCGTATGCCCCATT 57.343 45.000 4.05 0.00 41.78 3.16
68 69 3.704061 AGTATTGCGTATGCCCCATTTTT 59.296 39.130 4.05 0.00 41.78 1.94
69 70 2.663826 TTGCGTATGCCCCATTTTTC 57.336 45.000 4.05 0.00 41.78 2.29
71 72 1.895798 TGCGTATGCCCCATTTTTCAA 59.104 42.857 4.05 0.00 41.78 2.69
73 74 3.244215 TGCGTATGCCCCATTTTTCAAAA 60.244 39.130 4.05 0.00 41.78 2.44
74 75 3.370672 GCGTATGCCCCATTTTTCAAAAG 59.629 43.478 0.00 0.00 33.98 2.27
75 76 3.932089 CGTATGCCCCATTTTTCAAAAGG 59.068 43.478 0.00 0.00 0.00 3.11
76 77 2.947127 TGCCCCATTTTTCAAAAGGG 57.053 45.000 8.46 8.46 46.40 3.95
77 78 2.131023 TGCCCCATTTTTCAAAAGGGT 58.869 42.857 13.25 0.00 45.64 4.34
79 80 2.158682 GCCCCATTTTTCAAAAGGGTGT 60.159 45.455 13.25 0.00 45.64 4.16
80 81 3.475575 CCCCATTTTTCAAAAGGGTGTG 58.524 45.455 13.25 0.68 45.64 3.82
82 83 2.877786 CCATTTTTCAAAAGGGTGTGGC 59.122 45.455 7.43 0.00 43.00 5.01
83 84 3.433456 CCATTTTTCAAAAGGGTGTGGCT 60.433 43.478 7.43 0.00 43.00 4.75
84 85 4.202305 CCATTTTTCAAAAGGGTGTGGCTA 60.202 41.667 7.43 0.00 43.00 3.93
85 86 4.664150 TTTTTCAAAAGGGTGTGGCTAG 57.336 40.909 0.00 0.00 0.00 3.42
87 88 3.806949 TTCAAAAGGGTGTGGCTAGAT 57.193 42.857 0.00 0.00 0.00 1.98
88 89 3.350219 TCAAAAGGGTGTGGCTAGATC 57.650 47.619 0.00 0.00 0.00 2.75
89 90 2.912956 TCAAAAGGGTGTGGCTAGATCT 59.087 45.455 0.00 0.00 0.00 2.75
90 91 3.055094 TCAAAAGGGTGTGGCTAGATCTC 60.055 47.826 0.00 0.00 0.00 2.75
92 93 1.786937 AGGGTGTGGCTAGATCTCAG 58.213 55.000 0.00 0.00 0.00 3.35
93 94 1.007721 AGGGTGTGGCTAGATCTCAGT 59.992 52.381 0.00 0.00 0.00 3.41
94 95 1.410882 GGGTGTGGCTAGATCTCAGTC 59.589 57.143 0.00 0.00 0.00 3.51
95 96 1.066303 GGTGTGGCTAGATCTCAGTCG 59.934 57.143 0.00 0.00 0.00 4.18
96 97 1.066303 GTGTGGCTAGATCTCAGTCGG 59.934 57.143 0.00 0.00 0.00 4.79
97 98 0.031449 GTGGCTAGATCTCAGTCGGC 59.969 60.000 0.00 0.00 0.00 5.54
98 99 0.106469 TGGCTAGATCTCAGTCGGCT 60.106 55.000 0.00 0.00 0.00 5.52
99 100 0.313672 GGCTAGATCTCAGTCGGCTG 59.686 60.000 11.77 11.77 43.87 4.85
125 126 7.541122 GACTTAACAAAGTCTCAGTCAAGTT 57.459 36.000 10.31 0.00 44.32 2.66
126 127 7.923414 ACTTAACAAAGTCTCAGTCAAGTTT 57.077 32.000 0.00 0.00 0.00 2.66
127 128 8.336801 ACTTAACAAAGTCTCAGTCAAGTTTT 57.663 30.769 0.00 0.00 0.00 2.43
128 129 9.444600 ACTTAACAAAGTCTCAGTCAAGTTTTA 57.555 29.630 0.00 0.00 0.00 1.52
131 132 8.506168 AACAAAGTCTCAGTCAAGTTTTATCA 57.494 30.769 0.00 0.00 0.00 2.15
132 133 8.682936 ACAAAGTCTCAGTCAAGTTTTATCAT 57.317 30.769 0.00 0.00 0.00 2.45
134 135 9.956720 CAAAGTCTCAGTCAAGTTTTATCATTT 57.043 29.630 0.00 0.00 0.00 2.32
136 137 9.566432 AAGTCTCAGTCAAGTTTTATCATTTCT 57.434 29.630 0.00 0.00 0.00 2.52
137 138 9.566432 AGTCTCAGTCAAGTTTTATCATTTCTT 57.434 29.630 0.00 0.00 0.00 2.52
142 143 9.252962 CAGTCAAGTTTTATCATTTCTTTGCTT 57.747 29.630 0.00 0.00 0.00 3.91
143 144 9.252962 AGTCAAGTTTTATCATTTCTTTGCTTG 57.747 29.630 0.00 0.00 0.00 4.01
144 145 9.034544 GTCAAGTTTTATCATTTCTTTGCTTGT 57.965 29.630 0.00 0.00 33.53 3.16
145 146 9.033481 TCAAGTTTTATCATTTCTTTGCTTGTG 57.967 29.630 0.00 0.00 33.53 3.33
146 147 7.951530 AGTTTTATCATTTCTTTGCTTGTGG 57.048 32.000 0.00 0.00 0.00 4.17
148 149 8.370182 AGTTTTATCATTTCTTTGCTTGTGGAT 58.630 29.630 0.00 0.00 0.00 3.41
150 151 8.537049 TTTATCATTTCTTTGCTTGTGGATTG 57.463 30.769 0.00 0.00 0.00 2.67
151 152 4.309099 TCATTTCTTTGCTTGTGGATTGC 58.691 39.130 0.00 0.00 0.00 3.56
153 154 3.648339 TTCTTTGCTTGTGGATTGCTC 57.352 42.857 0.00 0.00 0.00 4.26
154 155 2.585330 TCTTTGCTTGTGGATTGCTCA 58.415 42.857 0.00 0.00 0.00 4.26
155 156 3.159472 TCTTTGCTTGTGGATTGCTCAT 58.841 40.909 0.00 0.00 0.00 2.90
156 157 4.334552 TCTTTGCTTGTGGATTGCTCATA 58.665 39.130 0.00 0.00 0.00 2.15
157 158 4.397103 TCTTTGCTTGTGGATTGCTCATAG 59.603 41.667 0.00 0.00 0.00 2.23
158 159 3.354948 TGCTTGTGGATTGCTCATAGT 57.645 42.857 0.00 0.00 0.00 2.12
159 160 3.273434 TGCTTGTGGATTGCTCATAGTC 58.727 45.455 0.00 0.00 0.00 2.59
161 162 4.162131 TGCTTGTGGATTGCTCATAGTCTA 59.838 41.667 0.00 0.00 0.00 2.59
162 163 4.749099 GCTTGTGGATTGCTCATAGTCTAG 59.251 45.833 0.00 0.00 0.00 2.43
163 164 4.327982 TGTGGATTGCTCATAGTCTAGC 57.672 45.455 0.00 0.00 39.25 3.42
164 165 3.963374 TGTGGATTGCTCATAGTCTAGCT 59.037 43.478 0.00 0.00 39.53 3.32
166 167 5.242615 TGTGGATTGCTCATAGTCTAGCTAG 59.757 44.000 15.01 15.01 39.53 3.42
170 171 6.350110 GGATTGCTCATAGTCTAGCTAGGAAG 60.350 46.154 20.58 9.89 39.60 3.46
171 172 4.402829 TGCTCATAGTCTAGCTAGGAAGG 58.597 47.826 20.58 8.31 39.60 3.46
172 173 3.192633 GCTCATAGTCTAGCTAGGAAGGC 59.807 52.174 20.58 11.69 39.60 4.35
173 174 4.662278 CTCATAGTCTAGCTAGGAAGGCT 58.338 47.826 20.58 7.26 39.60 4.58
176 177 3.611025 AGTCTAGCTAGGAAGGCTGAT 57.389 47.619 20.58 0.00 40.52 2.90
177 178 3.496331 AGTCTAGCTAGGAAGGCTGATC 58.504 50.000 20.58 0.00 40.52 2.92
178 179 3.117322 AGTCTAGCTAGGAAGGCTGATCA 60.117 47.826 20.58 0.00 40.52 2.92
179 180 3.005367 GTCTAGCTAGGAAGGCTGATCAC 59.995 52.174 20.58 3.20 40.52 3.06
180 181 1.871418 AGCTAGGAAGGCTGATCACA 58.129 50.000 0.00 0.00 38.73 3.58
182 183 2.776536 AGCTAGGAAGGCTGATCACAAT 59.223 45.455 0.00 0.00 38.73 2.71
183 184 3.137533 GCTAGGAAGGCTGATCACAATC 58.862 50.000 0.00 0.00 0.00 2.67
185 186 2.996631 AGGAAGGCTGATCACAATCAC 58.003 47.619 0.00 0.00 36.98 3.06
186 187 2.306805 AGGAAGGCTGATCACAATCACA 59.693 45.455 0.00 0.00 36.98 3.58
187 188 2.421424 GGAAGGCTGATCACAATCACAC 59.579 50.000 0.00 0.00 36.98 3.82
188 189 3.341823 GAAGGCTGATCACAATCACACT 58.658 45.455 0.00 0.00 36.98 3.55
190 191 2.039480 AGGCTGATCACAATCACACTGT 59.961 45.455 0.00 0.00 36.98 3.55
191 192 2.816087 GGCTGATCACAATCACACTGTT 59.184 45.455 0.00 0.00 36.98 3.16
193 194 4.224433 GCTGATCACAATCACACTGTTTG 58.776 43.478 0.00 0.00 36.98 2.93
194 195 4.790878 CTGATCACAATCACACTGTTTGG 58.209 43.478 0.00 0.00 36.98 3.28
195 196 3.569277 TGATCACAATCACACTGTTTGGG 59.431 43.478 0.00 0.00 36.98 4.12
196 197 3.011566 TCACAATCACACTGTTTGGGT 57.988 42.857 0.00 0.00 33.45 4.51
197 198 3.360867 TCACAATCACACTGTTTGGGTT 58.639 40.909 0.00 0.00 33.45 4.11
198 199 3.130164 TCACAATCACACTGTTTGGGTTG 59.870 43.478 9.71 9.71 33.45 3.77
199 200 3.130164 CACAATCACACTGTTTGGGTTGA 59.870 43.478 15.02 0.00 32.81 3.18
201 202 4.202141 ACAATCACACTGTTTGGGTTGATG 60.202 41.667 15.02 2.21 32.81 3.07
204 205 3.380004 TCACACTGTTTGGGTTGATGAAC 59.620 43.478 0.00 0.00 0.00 3.18
220 221 8.723942 GTTGATGAACCTTCTAGTGTTATCAT 57.276 34.615 0.00 0.00 0.00 2.45
221 222 9.167311 GTTGATGAACCTTCTAGTGTTATCATT 57.833 33.333 0.00 0.00 0.00 2.57
222 223 9.739276 TTGATGAACCTTCTAGTGTTATCATTT 57.261 29.630 0.00 0.00 0.00 2.32
226 227 9.793259 TGAACCTTCTAGTGTTATCATTTCTTT 57.207 29.630 0.00 0.00 0.00 2.52
228 229 8.045176 ACCTTCTAGTGTTATCATTTCTTTGC 57.955 34.615 0.00 0.00 0.00 3.68
229 230 7.885399 ACCTTCTAGTGTTATCATTTCTTTGCT 59.115 33.333 0.00 0.00 0.00 3.91
230 231 8.734386 CCTTCTAGTGTTATCATTTCTTTGCTT 58.266 33.333 0.00 0.00 0.00 3.91
231 232 9.552114 CTTCTAGTGTTATCATTTCTTTGCTTG 57.448 33.333 0.00 0.00 0.00 4.01
232 233 8.621532 TCTAGTGTTATCATTTCTTTGCTTGT 57.378 30.769 0.00 0.00 0.00 3.16
233 234 8.506437 TCTAGTGTTATCATTTCTTTGCTTGTG 58.494 33.333 0.00 0.00 0.00 3.33
234 235 6.449698 AGTGTTATCATTTCTTTGCTTGTGG 58.550 36.000 0.00 0.00 0.00 4.17
235 236 6.265196 AGTGTTATCATTTCTTTGCTTGTGGA 59.735 34.615 0.00 0.00 0.00 4.02
237 238 7.062605 GTGTTATCATTTCTTTGCTTGTGGATG 59.937 37.037 0.00 0.00 0.00 3.51
238 239 5.988310 ATCATTTCTTTGCTTGTGGATGA 57.012 34.783 0.00 0.00 0.00 2.92
239 240 5.988310 TCATTTCTTTGCTTGTGGATGAT 57.012 34.783 0.00 0.00 0.00 2.45
240 241 5.716094 TCATTTCTTTGCTTGTGGATGATG 58.284 37.500 0.00 0.00 0.00 3.07
241 242 5.244402 TCATTTCTTTGCTTGTGGATGATGT 59.756 36.000 0.00 0.00 0.00 3.06
243 244 6.647334 TTTCTTTGCTTGTGGATGATGTAA 57.353 33.333 0.00 0.00 0.00 2.41
244 245 5.627499 TCTTTGCTTGTGGATGATGTAAC 57.373 39.130 0.00 0.00 0.00 2.50
245 246 5.069318 TCTTTGCTTGTGGATGATGTAACA 58.931 37.500 0.00 0.00 0.00 2.41
246 247 5.534278 TCTTTGCTTGTGGATGATGTAACAA 59.466 36.000 0.00 0.00 0.00 2.83
247 248 4.764679 TGCTTGTGGATGATGTAACAAC 57.235 40.909 0.00 0.00 0.00 3.32
249 250 5.555966 TGCTTGTGGATGATGTAACAACTA 58.444 37.500 0.00 0.00 0.00 2.24
250 251 6.179756 TGCTTGTGGATGATGTAACAACTAT 58.820 36.000 0.00 0.00 0.00 2.12
253 254 7.485913 GCTTGTGGATGATGTAACAACTATTTG 59.514 37.037 0.00 0.00 38.83 2.32
254 255 8.628630 TTGTGGATGATGTAACAACTATTTGA 57.371 30.769 0.00 0.00 36.48 2.69
256 257 9.072375 TGTGGATGATGTAACAACTATTTGAAA 57.928 29.630 0.00 0.00 36.48 2.69
258 259 8.243426 TGGATGATGTAACAACTATTTGAAAGC 58.757 33.333 0.00 0.00 36.48 3.51
259 260 8.243426 GGATGATGTAACAACTATTTGAAAGCA 58.757 33.333 0.00 0.00 36.48 3.91
270 271 9.962759 CAACTATTTGAAAGCAATAAAATGAGC 57.037 29.630 0.00 0.00 34.24 4.26
272 273 8.313292 ACTATTTGAAAGCAATAAAATGAGCCA 58.687 29.630 0.00 0.00 33.25 4.75
273 274 9.321562 CTATTTGAAAGCAATAAAATGAGCCAT 57.678 29.630 0.00 0.00 33.25 4.40
276 277 6.880484 TGAAAGCAATAAAATGAGCCATGAT 58.120 32.000 0.00 0.00 0.00 2.45
277 278 6.759356 TGAAAGCAATAAAATGAGCCATGATG 59.241 34.615 0.00 0.00 0.00 3.07
278 279 5.209818 AGCAATAAAATGAGCCATGATGG 57.790 39.130 7.21 7.21 41.55 3.51
311 312 4.503714 AAAAGGTCTCACTCAAGTTCCA 57.496 40.909 0.00 0.00 0.00 3.53
313 314 4.503714 AAGGTCTCACTCAAGTTCCAAA 57.496 40.909 0.00 0.00 0.00 3.28
314 315 4.503714 AGGTCTCACTCAAGTTCCAAAA 57.496 40.909 0.00 0.00 0.00 2.44
316 317 3.945285 GGTCTCACTCAAGTTCCAAAACA 59.055 43.478 0.00 0.00 37.88 2.83
317 318 4.580580 GGTCTCACTCAAGTTCCAAAACAT 59.419 41.667 0.00 0.00 37.88 2.71
318 319 5.763204 GGTCTCACTCAAGTTCCAAAACATA 59.237 40.000 0.00 0.00 37.88 2.29
319 320 6.293462 GGTCTCACTCAAGTTCCAAAACATAC 60.293 42.308 0.00 0.00 37.88 2.39
321 322 6.826231 TCTCACTCAAGTTCCAAAACATACAA 59.174 34.615 0.00 0.00 37.88 2.41
322 323 7.338196 TCTCACTCAAGTTCCAAAACATACAAA 59.662 33.333 0.00 0.00 37.88 2.83
323 324 7.831753 TCACTCAAGTTCCAAAACATACAAAA 58.168 30.769 0.00 0.00 37.88 2.44
324 325 8.307483 TCACTCAAGTTCCAAAACATACAAAAA 58.693 29.630 0.00 0.00 37.88 1.94
362 363 9.819267 AAAACATAAAAGGAAATTTTACACGGA 57.181 25.926 0.00 0.00 44.15 4.69
363 364 9.990360 AAACATAAAAGGAAATTTTACACGGAT 57.010 25.926 0.00 0.00 44.15 4.18
364 365 9.634163 AACATAAAAGGAAATTTTACACGGATC 57.366 29.630 0.00 0.00 44.15 3.36
366 367 9.855021 CATAAAAGGAAATTTTACACGGATCTT 57.145 29.630 0.00 0.00 44.15 2.40
368 369 5.796350 AGGAAATTTTACACGGATCTTCG 57.204 39.130 0.00 0.00 0.00 3.79
369 370 5.243207 AGGAAATTTTACACGGATCTTCGT 58.757 37.500 0.00 0.00 44.91 3.85
387 388 4.871993 TCGTGTAAGATCTTACGGACTC 57.128 45.455 30.85 20.04 46.19 3.36
388 389 4.256110 TCGTGTAAGATCTTACGGACTCA 58.744 43.478 30.85 16.13 46.19 3.41
390 391 4.094590 CGTGTAAGATCTTACGGACTCAGT 59.905 45.833 30.85 1.26 46.19 3.41
411 412 5.065731 CAGTCCACTGAGATTTAGCAATTCC 59.934 44.000 0.00 0.00 46.59 3.01
412 413 4.943705 GTCCACTGAGATTTAGCAATTCCA 59.056 41.667 0.00 0.00 0.00 3.53
413 414 5.591877 GTCCACTGAGATTTAGCAATTCCAT 59.408 40.000 0.00 0.00 0.00 3.41
414 415 6.096001 GTCCACTGAGATTTAGCAATTCCATT 59.904 38.462 0.00 0.00 0.00 3.16
415 416 6.664816 TCCACTGAGATTTAGCAATTCCATTT 59.335 34.615 0.00 0.00 0.00 2.32
416 417 7.178983 TCCACTGAGATTTAGCAATTCCATTTT 59.821 33.333 0.00 0.00 0.00 1.82
419 420 8.587608 ACTGAGATTTAGCAATTCCATTTTCAA 58.412 29.630 0.00 0.00 0.00 2.69
420 421 9.426837 CTGAGATTTAGCAATTCCATTTTCAAA 57.573 29.630 0.00 0.00 0.00 2.69
421 422 9.775854 TGAGATTTAGCAATTCCATTTTCAAAA 57.224 25.926 0.00 0.00 0.00 2.44
450 451 8.507524 AAGGCATAGTTTGACTATCTAAAACC 57.492 34.615 0.00 0.00 45.69 3.27
451 452 7.630082 AGGCATAGTTTGACTATCTAAAACCA 58.370 34.615 0.00 0.00 44.07 3.67
452 453 8.275040 AGGCATAGTTTGACTATCTAAAACCAT 58.725 33.333 0.00 0.00 44.07 3.55
453 454 8.345565 GGCATAGTTTGACTATCTAAAACCATG 58.654 37.037 0.00 0.00 39.26 3.66
454 455 9.109393 GCATAGTTTGACTATCTAAAACCATGA 57.891 33.333 9.17 0.00 39.26 3.07
461 462 8.506168 TGACTATCTAAAACCATGATTTGACC 57.494 34.615 0.00 0.00 0.00 4.02
462 463 7.279981 TGACTATCTAAAACCATGATTTGACCG 59.720 37.037 0.00 0.00 0.00 4.79
464 465 2.741759 AAAACCATGATTTGACCGCC 57.258 45.000 0.00 0.00 0.00 6.13
465 466 1.626686 AAACCATGATTTGACCGCCA 58.373 45.000 0.00 0.00 0.00 5.69
466 467 1.626686 AACCATGATTTGACCGCCAA 58.373 45.000 0.00 0.00 0.00 4.52
476 477 2.799126 TGACCGCCAAATAGTCCAAT 57.201 45.000 0.00 0.00 0.00 3.16
480 481 5.931294 TGACCGCCAAATAGTCCAATAATA 58.069 37.500 0.00 0.00 0.00 0.98
482 483 7.681679 TGACCGCCAAATAGTCCAATAATATA 58.318 34.615 0.00 0.00 0.00 0.86
483 484 8.325787 TGACCGCCAAATAGTCCAATAATATAT 58.674 33.333 0.00 0.00 0.00 0.86
484 485 8.506168 ACCGCCAAATAGTCCAATAATATATG 57.494 34.615 0.00 0.00 0.00 1.78
485 486 7.067008 ACCGCCAAATAGTCCAATAATATATGC 59.933 37.037 0.00 0.00 0.00 3.14
487 488 7.468631 CGCCAAATAGTCCAATAATATATGCCC 60.469 40.741 0.00 0.00 0.00 5.36
488 489 7.341769 GCCAAATAGTCCAATAATATATGCCCA 59.658 37.037 0.00 0.00 0.00 5.36
489 490 9.425248 CCAAATAGTCCAATAATATATGCCCAT 57.575 33.333 0.00 0.00 0.00 4.00
491 492 9.995594 AAATAGTCCAATAATATATGCCCATGT 57.004 29.630 0.00 0.00 0.00 3.21
492 493 9.995594 AATAGTCCAATAATATATGCCCATGTT 57.004 29.630 0.00 0.00 0.00 2.71
494 495 8.807948 AGTCCAATAATATATGCCCATGTTAC 57.192 34.615 0.00 0.00 0.00 2.50
496 497 8.458843 GTCCAATAATATATGCCCATGTTACAC 58.541 37.037 0.00 0.00 0.00 2.90
497 498 8.166726 TCCAATAATATATGCCCATGTTACACA 58.833 33.333 0.00 0.00 0.00 3.72
498 499 8.801299 CCAATAATATATGCCCATGTTACACAA 58.199 33.333 0.00 0.00 0.00 3.33
503 504 9.545105 AATATATGCCCATGTTACACAAAAATG 57.455 29.630 0.00 0.00 0.00 2.32
506 507 5.053145 TGCCCATGTTACACAAAAATGAAC 58.947 37.500 0.00 0.00 0.00 3.18
508 509 5.050431 GCCCATGTTACACAAAAATGAACAC 60.050 40.000 0.00 0.00 33.16 3.32
509 510 5.465056 CCCATGTTACACAAAAATGAACACC 59.535 40.000 0.00 0.00 33.16 4.16
511 512 6.019156 CCATGTTACACAAAAATGAACACCAC 60.019 38.462 0.00 0.00 33.16 4.16
512 513 6.274157 TGTTACACAAAAATGAACACCACT 57.726 33.333 0.00 0.00 0.00 4.00
514 515 7.476667 TGTTACACAAAAATGAACACCACTAG 58.523 34.615 0.00 0.00 0.00 2.57
516 517 6.959639 ACACAAAAATGAACACCACTAGAT 57.040 33.333 0.00 0.00 0.00 1.98
517 518 7.346751 ACACAAAAATGAACACCACTAGATT 57.653 32.000 0.00 0.00 0.00 2.40
519 520 7.068103 ACACAAAAATGAACACCACTAGATTGA 59.932 33.333 0.00 0.00 0.00 2.57
521 522 9.295825 ACAAAAATGAACACCACTAGATTGATA 57.704 29.630 0.00 0.00 0.00 2.15
525 526 9.685276 AAATGAACACCACTAGATTGATATTCA 57.315 29.630 0.00 0.00 0.00 2.57
526 527 9.685276 AATGAACACCACTAGATTGATATTCAA 57.315 29.630 0.00 0.00 41.09 2.69
527 528 9.685276 ATGAACACCACTAGATTGATATTCAAA 57.315 29.630 0.00 0.00 40.12 2.69
529 530 9.994432 GAACACCACTAGATTGATATTCAAAAG 57.006 33.333 0.00 0.00 40.12 2.27
530 531 7.989826 ACACCACTAGATTGATATTCAAAAGC 58.010 34.615 0.00 0.00 40.12 3.51
532 533 7.912250 CACCACTAGATTGATATTCAAAAGCAC 59.088 37.037 0.00 0.00 40.12 4.40
533 534 7.831193 ACCACTAGATTGATATTCAAAAGCACT 59.169 33.333 0.00 0.00 40.12 4.40
534 535 8.680903 CCACTAGATTGATATTCAAAAGCACTT 58.319 33.333 0.00 0.00 40.12 3.16
554 555 9.618890 AGCACTTATATGTGATTATGTTTCTGT 57.381 29.630 19.90 0.00 40.12 3.41
565 566 9.722056 GTGATTATGTTTCTGTAATCATTGACC 57.278 33.333 10.03 0.00 44.50 4.02
566 567 8.611757 TGATTATGTTTCTGTAATCATTGACCG 58.388 33.333 4.25 0.00 40.50 4.79
569 570 7.630242 ATGTTTCTGTAATCATTGACCGAAT 57.370 32.000 0.00 0.00 0.00 3.34
571 572 8.731275 TGTTTCTGTAATCATTGACCGAATAT 57.269 30.769 0.00 0.00 0.00 1.28
572 573 9.173021 TGTTTCTGTAATCATTGACCGAATATT 57.827 29.630 0.00 0.00 0.00 1.28
633 634 8.827677 ACACCTTATATTTTCGAAACATAGAGC 58.172 33.333 10.79 0.00 0.00 4.09
657 658 7.440556 AGCTTTGTGTATTCAGTCATAGCTATG 59.559 37.037 25.13 25.13 40.98 2.23
720 722 4.797349 GCTATTTTTGCTTGCATGAGTCTC 59.203 41.667 3.33 0.00 0.00 3.36
778 780 5.825151 AGAGCTGAGAAAATATAGCAAACCC 59.175 40.000 0.00 0.00 38.59 4.11
832 834 2.631384 TGAGACTCTTCCCCATTTCCA 58.369 47.619 3.68 0.00 0.00 3.53
834 836 2.573915 GAGACTCTTCCCCATTTCCACT 59.426 50.000 0.00 0.00 0.00 4.00
842 844 2.045047 TCCCCATTTCCACTCTCTCTCT 59.955 50.000 0.00 0.00 0.00 3.10
843 845 2.433970 CCCCATTTCCACTCTCTCTCTC 59.566 54.545 0.00 0.00 0.00 3.20
844 846 3.373830 CCCATTTCCACTCTCTCTCTCT 58.626 50.000 0.00 0.00 0.00 3.10
845 847 3.384467 CCCATTTCCACTCTCTCTCTCTC 59.616 52.174 0.00 0.00 0.00 3.20
846 848 4.280819 CCATTTCCACTCTCTCTCTCTCT 58.719 47.826 0.00 0.00 0.00 3.10
848 850 4.927267 TTTCCACTCTCTCTCTCTCTCT 57.073 45.455 0.00 0.00 0.00 3.10
849 851 4.487714 TTCCACTCTCTCTCTCTCTCTC 57.512 50.000 0.00 0.00 0.00 3.20
851 853 3.706594 TCCACTCTCTCTCTCTCTCTCTC 59.293 52.174 0.00 0.00 0.00 3.20
852 854 3.708631 CCACTCTCTCTCTCTCTCTCTCT 59.291 52.174 0.00 0.00 0.00 3.10
854 856 4.648762 CACTCTCTCTCTCTCTCTCTCTCT 59.351 50.000 0.00 0.00 0.00 3.10
855 857 4.892934 ACTCTCTCTCTCTCTCTCTCTCTC 59.107 50.000 0.00 0.00 0.00 3.20
862 864 1.077357 TCTCTCTCTCTCCCGGCAC 60.077 63.158 0.00 0.00 0.00 5.01
936 938 1.823470 ACACACATGCACGTGCCTT 60.823 52.632 35.72 21.57 40.73 4.35
959 961 1.729149 CGCGCCAAGAAATTCCTCAAC 60.729 52.381 0.00 0.00 0.00 3.18
966 968 4.100808 CCAAGAAATTCCTCAACCAACCAA 59.899 41.667 0.00 0.00 0.00 3.67
979 981 4.937201 ACCAACCAACCTTGAATTTCTC 57.063 40.909 0.00 0.00 0.00 2.87
997 999 0.371301 TCGTGAAGATCGACGTACGG 59.629 55.000 21.06 2.32 42.82 4.02
1008 1010 0.804933 GACGTACGGCAATGGAGTCC 60.805 60.000 18.23 0.73 0.00 3.85
1124 1126 2.435059 GGTGAGCTTCGTCCTGGC 60.435 66.667 0.00 0.00 0.00 4.85
1247 1249 2.249413 CTCATCCGGCTGCTGGAGTT 62.249 60.000 31.73 16.30 42.74 3.01
1619 1621 1.162698 CAGGTGTCCATGCTGTTCAG 58.837 55.000 0.00 0.00 0.00 3.02
1629 1631 2.049156 CTGTTCAGGTCGCTCGCA 60.049 61.111 0.00 0.00 0.00 5.10
2010 2012 3.803082 CGCACCATGACCAAGCGG 61.803 66.667 0.00 0.00 44.20 5.52
2257 2259 1.789751 CACTACTACCACGTCGCGA 59.210 57.895 3.71 3.71 0.00 5.87
2910 2915 1.528542 CCCTGTCGAGGAGCGGATA 60.529 63.158 0.00 0.00 42.93 2.59
3141 3155 3.930848 GACCGTGTACAAACTATTCAGGG 59.069 47.826 0.00 0.00 39.14 4.45
3143 3157 4.181578 CCGTGTACAAACTATTCAGGGAG 58.818 47.826 0.00 0.00 36.54 4.30
3144 3158 4.181578 CGTGTACAAACTATTCAGGGAGG 58.818 47.826 0.00 0.00 0.00 4.30
3145 3159 3.939592 GTGTACAAACTATTCAGGGAGGC 59.060 47.826 0.00 0.00 0.00 4.70
3149 3163 5.653255 ACAAACTATTCAGGGAGGCATAT 57.347 39.130 0.00 0.00 0.00 1.78
3284 4285 3.312421 ACATTCATGAAATCTTACGCGGG 59.688 43.478 13.09 0.00 0.00 6.13
3290 4291 4.126208 TGAAATCTTACGCGGGTATTCA 57.874 40.909 17.44 17.44 0.00 2.57
3349 4352 9.147732 TCTTATGTGTTATATCACTGGACTGAT 57.852 33.333 13.67 2.08 38.90 2.90
3355 4358 8.298140 GTGTTATATCACTGGACTGATACCTAC 58.702 40.741 6.68 0.00 36.23 3.18
3362 4365 1.761198 GGACTGATACCTACCCACACC 59.239 57.143 0.00 0.00 0.00 4.16
3427 4430 9.625747 ACAAAGATTTTGATTTTGGGTATTGTT 57.374 25.926 8.41 0.00 36.41 2.83
3841 4844 2.888594 TCAATCGATTTCGTCCCAGTC 58.111 47.619 8.21 0.00 40.80 3.51
3866 4869 2.972625 GATTCAGATCCAACGTGGTCA 58.027 47.619 0.00 0.00 39.03 4.02
3867 4870 3.535561 GATTCAGATCCAACGTGGTCAT 58.464 45.455 0.00 0.00 39.03 3.06
3868 4871 4.693283 GATTCAGATCCAACGTGGTCATA 58.307 43.478 0.00 0.00 39.03 2.15
3900 4910 3.571401 GCCTAACCAGATGCATTGCTTAT 59.429 43.478 10.49 0.00 0.00 1.73
3912 4922 3.563390 GCATTGCTTATCTTCCTCCTGTC 59.437 47.826 0.16 0.00 0.00 3.51
3915 4925 4.412796 TGCTTATCTTCCTCCTGTCATG 57.587 45.455 0.00 0.00 0.00 3.07
3925 4937 0.250684 TCCTGTCATGCGCCTGAAAA 60.251 50.000 17.22 7.91 0.00 2.29
3926 4938 0.813184 CCTGTCATGCGCCTGAAAAT 59.187 50.000 17.22 0.00 0.00 1.82
3928 4940 0.447406 TGTCATGCGCCTGAAAATCG 59.553 50.000 17.22 0.00 0.00 3.34
3929 4941 0.726827 GTCATGCGCCTGAAAATCGA 59.273 50.000 17.22 0.00 0.00 3.59
3941 4953 1.858372 AAAATCGACCAAACCGCCCG 61.858 55.000 0.00 0.00 0.00 6.13
3942 4954 3.540367 AATCGACCAAACCGCCCGT 62.540 57.895 0.00 0.00 0.00 5.28
3943 4955 4.973055 TCGACCAAACCGCCCGTG 62.973 66.667 0.00 0.00 0.00 4.94
3944 4956 4.973055 CGACCAAACCGCCCGTGA 62.973 66.667 0.00 0.00 0.00 4.35
3945 4957 2.359478 GACCAAACCGCCCGTGAT 60.359 61.111 0.00 0.00 0.00 3.06
3946 4958 2.671619 ACCAAACCGCCCGTGATG 60.672 61.111 0.00 0.00 0.00 3.07
3947 4959 4.114997 CCAAACCGCCCGTGATGC 62.115 66.667 0.00 0.00 0.00 3.91
3948 4960 4.114997 CAAACCGCCCGTGATGCC 62.115 66.667 0.00 0.00 0.00 4.40
3954 4966 2.824041 GCCCGTGATGCCGATGTT 60.824 61.111 0.00 0.00 0.00 2.71
3955 4967 3.101209 CCCGTGATGCCGATGTTG 58.899 61.111 0.00 0.00 0.00 3.33
3956 4968 2.404789 CCGTGATGCCGATGTTGC 59.595 61.111 0.00 0.00 0.00 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.781025 CTTTGTGTTGCCGCGGAAGA 61.781 55.000 33.48 16.04 0.00 2.87
2 3 2.718731 CTTTGTGTTGCCGCGGAA 59.281 55.556 33.48 19.06 0.00 4.30
16 17 9.234862 AACATTGGTTCCTATAGCCTAGGCTTT 62.235 40.741 40.02 32.93 40.04 3.51
19 20 3.328050 ACATTGGTTCCTATAGCCTAGGC 59.672 47.826 27.19 27.19 42.33 3.93
20 21 5.163195 ACAACATTGGTTCCTATAGCCTAGG 60.163 44.000 3.67 3.67 34.21 3.02
21 22 5.930135 ACAACATTGGTTCCTATAGCCTAG 58.070 41.667 0.00 0.00 34.21 3.02
22 23 5.968676 ACAACATTGGTTCCTATAGCCTA 57.031 39.130 0.00 0.00 34.21 3.93
23 24 4.862641 ACAACATTGGTTCCTATAGCCT 57.137 40.909 0.00 0.00 34.21 4.58
24 25 6.120220 ACTTACAACATTGGTTCCTATAGCC 58.880 40.000 0.00 0.00 34.21 3.93
25 26 8.904099 ATACTTACAACATTGGTTCCTATAGC 57.096 34.615 0.00 0.00 34.21 2.97
27 28 9.116067 GCAATACTTACAACATTGGTTCCTATA 57.884 33.333 0.00 0.00 34.21 1.31
28 29 7.201696 CGCAATACTTACAACATTGGTTCCTAT 60.202 37.037 0.00 0.00 34.21 2.57
29 30 6.092944 CGCAATACTTACAACATTGGTTCCTA 59.907 38.462 0.00 0.00 34.21 2.94
30 31 5.106317 CGCAATACTTACAACATTGGTTCCT 60.106 40.000 0.00 0.00 34.21 3.36
32 33 5.695818 ACGCAATACTTACAACATTGGTTC 58.304 37.500 0.00 0.00 34.21 3.62
34 35 6.676943 GCATACGCAATACTTACAACATTGGT 60.677 38.462 0.00 0.00 38.36 3.67
36 37 5.681105 GGCATACGCAATACTTACAACATTG 59.319 40.000 0.00 0.00 41.24 2.82
37 38 5.220970 GGGCATACGCAATACTTACAACATT 60.221 40.000 0.00 0.00 41.24 2.71
38 39 4.274950 GGGCATACGCAATACTTACAACAT 59.725 41.667 0.00 0.00 41.24 2.71
39 40 3.623960 GGGCATACGCAATACTTACAACA 59.376 43.478 0.00 0.00 41.24 3.33
40 41 3.002965 GGGGCATACGCAATACTTACAAC 59.997 47.826 0.00 0.00 41.24 3.32
41 42 3.207778 GGGGCATACGCAATACTTACAA 58.792 45.455 0.00 0.00 41.24 2.41
42 43 2.170817 TGGGGCATACGCAATACTTACA 59.829 45.455 0.00 0.00 41.24 2.41
43 44 2.841215 TGGGGCATACGCAATACTTAC 58.159 47.619 0.00 0.00 41.24 2.34
44 45 3.780804 ATGGGGCATACGCAATACTTA 57.219 42.857 0.00 0.00 45.79 2.24
45 46 2.656947 ATGGGGCATACGCAATACTT 57.343 45.000 0.00 0.00 45.79 2.24
46 47 2.656947 AATGGGGCATACGCAATACT 57.343 45.000 0.00 0.00 45.79 2.12
47 48 3.726291 AAAATGGGGCATACGCAATAC 57.274 42.857 0.00 0.00 45.79 1.89
50 51 1.895798 TGAAAAATGGGGCATACGCAA 59.104 42.857 0.00 0.00 45.79 4.85
51 52 1.550327 TGAAAAATGGGGCATACGCA 58.450 45.000 0.00 0.00 46.77 5.24
53 54 3.932089 CCTTTTGAAAAATGGGGCATACG 59.068 43.478 0.00 0.00 0.00 3.06
54 55 4.260985 CCCTTTTGAAAAATGGGGCATAC 58.739 43.478 13.40 0.00 34.99 2.39
55 56 3.913163 ACCCTTTTGAAAAATGGGGCATA 59.087 39.130 21.33 0.00 39.04 3.14
56 57 2.715880 ACCCTTTTGAAAAATGGGGCAT 59.284 40.909 21.33 4.73 39.04 4.40
57 58 2.131023 ACCCTTTTGAAAAATGGGGCA 58.869 42.857 21.33 0.00 39.04 5.36
58 59 2.158682 ACACCCTTTTGAAAAATGGGGC 60.159 45.455 21.33 0.00 39.73 5.80
59 60 3.475575 CACACCCTTTTGAAAAATGGGG 58.524 45.455 21.33 13.77 41.24 4.96
60 61 3.475575 CCACACCCTTTTGAAAAATGGG 58.524 45.455 17.69 17.69 37.81 4.00
61 62 2.877786 GCCACACCCTTTTGAAAAATGG 59.122 45.455 7.93 7.93 38.94 3.16
63 64 4.898861 TCTAGCCACACCCTTTTGAAAAAT 59.101 37.500 0.00 0.00 0.00 1.82
64 65 4.282496 TCTAGCCACACCCTTTTGAAAAA 58.718 39.130 0.00 0.00 0.00 1.94
65 66 3.904717 TCTAGCCACACCCTTTTGAAAA 58.095 40.909 0.00 0.00 0.00 2.29
68 69 2.912956 AGATCTAGCCACACCCTTTTGA 59.087 45.455 0.00 0.00 0.00 2.69
69 70 3.274288 GAGATCTAGCCACACCCTTTTG 58.726 50.000 0.00 0.00 0.00 2.44
71 72 2.503356 CTGAGATCTAGCCACACCCTTT 59.497 50.000 0.00 0.00 0.00 3.11
73 74 1.007721 ACTGAGATCTAGCCACACCCT 59.992 52.381 0.00 0.00 0.00 4.34
74 75 1.410882 GACTGAGATCTAGCCACACCC 59.589 57.143 0.00 0.00 0.00 4.61
75 76 1.066303 CGACTGAGATCTAGCCACACC 59.934 57.143 0.00 0.00 0.00 4.16
76 77 1.066303 CCGACTGAGATCTAGCCACAC 59.934 57.143 0.00 0.00 0.00 3.82
77 78 1.393603 CCGACTGAGATCTAGCCACA 58.606 55.000 0.00 0.00 0.00 4.17
79 80 0.106469 AGCCGACTGAGATCTAGCCA 60.106 55.000 0.00 0.00 0.00 4.75
80 81 2.727103 AGCCGACTGAGATCTAGCC 58.273 57.895 0.00 0.00 0.00 3.93
89 90 7.185355 ACTTTGTTAAGTCTCAGCCGACTGA 62.185 44.000 0.24 0.24 44.69 3.41
90 91 2.724977 TGTTAAGTCTCAGCCGACTG 57.275 50.000 0.00 0.00 43.14 3.51
92 93 3.391049 ACTTTGTTAAGTCTCAGCCGAC 58.609 45.455 0.00 0.00 40.60 4.79
93 94 3.746045 ACTTTGTTAAGTCTCAGCCGA 57.254 42.857 0.00 0.00 40.60 5.54
107 108 8.682936 ATGATAAAACTTGACTGAGACTTTGT 57.317 30.769 0.00 0.00 0.00 2.83
108 109 9.956720 AAATGATAAAACTTGACTGAGACTTTG 57.043 29.630 0.00 0.00 0.00 2.77
114 115 8.909671 GCAAAGAAATGATAAAACTTGACTGAG 58.090 33.333 0.00 0.00 0.00 3.35
115 116 8.632679 AGCAAAGAAATGATAAAACTTGACTGA 58.367 29.630 0.00 0.00 0.00 3.41
116 117 8.807667 AGCAAAGAAATGATAAAACTTGACTG 57.192 30.769 0.00 0.00 0.00 3.51
117 118 9.252962 CAAGCAAAGAAATGATAAAACTTGACT 57.747 29.630 0.00 0.00 34.22 3.41
118 119 9.034544 ACAAGCAAAGAAATGATAAAACTTGAC 57.965 29.630 0.00 0.00 35.81 3.18
119 120 9.033481 CACAAGCAAAGAAATGATAAAACTTGA 57.967 29.630 0.00 0.00 35.81 3.02
120 121 8.277713 CCACAAGCAAAGAAATGATAAAACTTG 58.722 33.333 0.00 0.00 37.42 3.16
121 122 8.203485 TCCACAAGCAAAGAAATGATAAAACTT 58.797 29.630 0.00 0.00 0.00 2.66
122 123 7.725251 TCCACAAGCAAAGAAATGATAAAACT 58.275 30.769 0.00 0.00 0.00 2.66
123 124 7.945033 TCCACAAGCAAAGAAATGATAAAAC 57.055 32.000 0.00 0.00 0.00 2.43
125 126 7.118101 GCAATCCACAAGCAAAGAAATGATAAA 59.882 33.333 0.00 0.00 0.00 1.40
126 127 6.591062 GCAATCCACAAGCAAAGAAATGATAA 59.409 34.615 0.00 0.00 0.00 1.75
127 128 6.071221 AGCAATCCACAAGCAAAGAAATGATA 60.071 34.615 0.00 0.00 0.00 2.15
128 129 4.933400 GCAATCCACAAGCAAAGAAATGAT 59.067 37.500 0.00 0.00 0.00 2.45
129 130 4.039488 AGCAATCCACAAGCAAAGAAATGA 59.961 37.500 0.00 0.00 0.00 2.57
130 131 4.312443 AGCAATCCACAAGCAAAGAAATG 58.688 39.130 0.00 0.00 0.00 2.32
131 132 4.039488 TGAGCAATCCACAAGCAAAGAAAT 59.961 37.500 0.00 0.00 0.00 2.17
132 133 3.384146 TGAGCAATCCACAAGCAAAGAAA 59.616 39.130 0.00 0.00 0.00 2.52
134 135 2.585330 TGAGCAATCCACAAGCAAAGA 58.415 42.857 0.00 0.00 0.00 2.52
135 136 3.587797 ATGAGCAATCCACAAGCAAAG 57.412 42.857 0.00 0.00 0.00 2.77
136 137 4.081406 ACTATGAGCAATCCACAAGCAAA 58.919 39.130 0.00 0.00 0.00 3.68
137 138 3.689347 ACTATGAGCAATCCACAAGCAA 58.311 40.909 0.00 0.00 0.00 3.91
138 139 3.054875 AGACTATGAGCAATCCACAAGCA 60.055 43.478 0.00 0.00 0.00 3.91
139 140 3.539604 AGACTATGAGCAATCCACAAGC 58.460 45.455 0.00 0.00 0.00 4.01
142 143 3.963374 AGCTAGACTATGAGCAATCCACA 59.037 43.478 0.00 0.00 41.36 4.17
143 144 4.599047 AGCTAGACTATGAGCAATCCAC 57.401 45.455 0.00 0.00 41.36 4.02
144 145 4.769488 CCTAGCTAGACTATGAGCAATCCA 59.231 45.833 22.70 0.00 41.36 3.41
145 146 5.013547 TCCTAGCTAGACTATGAGCAATCC 58.986 45.833 22.70 0.00 41.36 3.01
146 147 6.350110 CCTTCCTAGCTAGACTATGAGCAATC 60.350 46.154 22.70 0.00 41.36 2.67
148 149 4.830046 CCTTCCTAGCTAGACTATGAGCAA 59.170 45.833 22.70 0.00 41.36 3.91
150 151 3.192633 GCCTTCCTAGCTAGACTATGAGC 59.807 52.174 22.70 11.01 39.08 4.26
151 152 4.458989 CAGCCTTCCTAGCTAGACTATGAG 59.541 50.000 22.70 9.49 38.95 2.90
153 154 4.402829 TCAGCCTTCCTAGCTAGACTATG 58.597 47.826 22.70 12.14 38.95 2.23
154 155 4.733077 TCAGCCTTCCTAGCTAGACTAT 57.267 45.455 22.70 0.08 38.95 2.12
155 156 4.104897 TGATCAGCCTTCCTAGCTAGACTA 59.895 45.833 22.70 4.37 38.95 2.59
156 157 3.117322 TGATCAGCCTTCCTAGCTAGACT 60.117 47.826 22.70 8.14 38.95 3.24
157 158 3.005367 GTGATCAGCCTTCCTAGCTAGAC 59.995 52.174 22.70 3.80 38.95 2.59
158 159 3.226777 GTGATCAGCCTTCCTAGCTAGA 58.773 50.000 22.70 5.59 38.95 2.43
159 160 2.961741 TGTGATCAGCCTTCCTAGCTAG 59.038 50.000 14.20 14.20 38.95 3.42
161 162 1.871418 TGTGATCAGCCTTCCTAGCT 58.129 50.000 0.00 0.00 42.70 3.32
162 163 2.698855 TTGTGATCAGCCTTCCTAGC 57.301 50.000 0.00 0.00 0.00 3.42
163 164 4.125703 GTGATTGTGATCAGCCTTCCTAG 58.874 47.826 0.00 0.00 42.73 3.02
164 165 3.519107 TGTGATTGTGATCAGCCTTCCTA 59.481 43.478 0.00 0.00 42.73 2.94
166 167 2.421424 GTGTGATTGTGATCAGCCTTCC 59.579 50.000 0.00 0.00 42.73 3.46
170 171 2.430465 ACAGTGTGATTGTGATCAGCC 58.570 47.619 0.00 0.00 42.73 4.85
171 172 4.224433 CAAACAGTGTGATTGTGATCAGC 58.776 43.478 0.00 0.00 42.73 4.26
172 173 4.320714 CCCAAACAGTGTGATTGTGATCAG 60.321 45.833 0.00 0.00 42.73 2.90
173 174 3.569277 CCCAAACAGTGTGATTGTGATCA 59.431 43.478 0.00 0.00 39.92 2.92
176 177 3.011566 ACCCAAACAGTGTGATTGTGA 57.988 42.857 0.00 0.00 29.47 3.58
177 178 3.130164 TCAACCCAAACAGTGTGATTGTG 59.870 43.478 0.00 0.00 29.47 3.33
178 179 3.360867 TCAACCCAAACAGTGTGATTGT 58.639 40.909 0.00 0.00 29.47 2.71
179 180 4.037803 TCATCAACCCAAACAGTGTGATTG 59.962 41.667 0.00 0.00 31.04 2.67
180 181 4.214310 TCATCAACCCAAACAGTGTGATT 58.786 39.130 0.00 0.00 0.00 2.57
182 183 3.289407 TCATCAACCCAAACAGTGTGA 57.711 42.857 0.00 0.00 0.00 3.58
183 184 3.490761 GGTTCATCAACCCAAACAGTGTG 60.491 47.826 0.00 0.00 46.01 3.82
185 186 3.369546 GGTTCATCAACCCAAACAGTG 57.630 47.619 0.00 0.00 46.01 3.66
195 196 8.723942 ATGATAACACTAGAAGGTTCATCAAC 57.276 34.615 0.00 0.00 0.00 3.18
196 197 9.739276 AAATGATAACACTAGAAGGTTCATCAA 57.261 29.630 0.00 0.00 0.00 2.57
197 198 9.383519 GAAATGATAACACTAGAAGGTTCATCA 57.616 33.333 0.00 8.37 0.00 3.07
198 199 9.606631 AGAAATGATAACACTAGAAGGTTCATC 57.393 33.333 0.00 3.87 0.00 2.92
199 200 9.965902 AAGAAATGATAACACTAGAAGGTTCAT 57.034 29.630 0.00 0.00 0.00 2.57
204 205 8.273780 AGCAAAGAAATGATAACACTAGAAGG 57.726 34.615 0.00 0.00 0.00 3.46
207 208 8.506437 CACAAGCAAAGAAATGATAACACTAGA 58.494 33.333 0.00 0.00 0.00 2.43
208 209 7.752239 CCACAAGCAAAGAAATGATAACACTAG 59.248 37.037 0.00 0.00 0.00 2.57
209 210 7.446931 TCCACAAGCAAAGAAATGATAACACTA 59.553 33.333 0.00 0.00 0.00 2.74
210 211 6.265196 TCCACAAGCAAAGAAATGATAACACT 59.735 34.615 0.00 0.00 0.00 3.55
211 212 6.446318 TCCACAAGCAAAGAAATGATAACAC 58.554 36.000 0.00 0.00 0.00 3.32
212 213 6.647334 TCCACAAGCAAAGAAATGATAACA 57.353 33.333 0.00 0.00 0.00 2.41
214 215 7.465353 TCATCCACAAGCAAAGAAATGATAA 57.535 32.000 0.00 0.00 0.00 1.75
215 216 7.123098 ACATCATCCACAAGCAAAGAAATGATA 59.877 33.333 0.00 0.00 32.80 2.15
216 217 5.988310 TCATCCACAAGCAAAGAAATGAT 57.012 34.783 0.00 0.00 0.00 2.45
218 219 5.475719 ACATCATCCACAAGCAAAGAAATG 58.524 37.500 0.00 0.00 0.00 2.32
220 221 6.040278 TGTTACATCATCCACAAGCAAAGAAA 59.960 34.615 0.00 0.00 0.00 2.52
221 222 5.534278 TGTTACATCATCCACAAGCAAAGAA 59.466 36.000 0.00 0.00 0.00 2.52
222 223 5.069318 TGTTACATCATCCACAAGCAAAGA 58.931 37.500 0.00 0.00 0.00 2.52
226 227 4.397420 AGTTGTTACATCATCCACAAGCA 58.603 39.130 0.00 0.00 29.85 3.91
228 229 8.729756 TCAAATAGTTGTTACATCATCCACAAG 58.270 33.333 2.43 0.00 36.07 3.16
229 230 8.628630 TCAAATAGTTGTTACATCATCCACAA 57.371 30.769 2.43 0.00 36.07 3.33
230 231 8.628630 TTCAAATAGTTGTTACATCATCCACA 57.371 30.769 2.43 0.00 36.07 4.17
231 232 9.559958 CTTTCAAATAGTTGTTACATCATCCAC 57.440 33.333 2.43 0.00 36.07 4.02
232 233 8.243426 GCTTTCAAATAGTTGTTACATCATCCA 58.757 33.333 2.43 0.00 36.07 3.41
233 234 8.243426 TGCTTTCAAATAGTTGTTACATCATCC 58.757 33.333 2.43 0.00 36.07 3.51
234 235 9.624697 TTGCTTTCAAATAGTTGTTACATCATC 57.375 29.630 2.43 0.00 36.07 2.92
244 245 9.962759 GCTCATTTTATTGCTTTCAAATAGTTG 57.037 29.630 0.00 0.00 35.56 3.16
245 246 9.154847 GGCTCATTTTATTGCTTTCAAATAGTT 57.845 29.630 0.00 0.00 35.56 2.24
246 247 8.313292 TGGCTCATTTTATTGCTTTCAAATAGT 58.687 29.630 0.00 0.00 35.56 2.12
247 248 8.706492 TGGCTCATTTTATTGCTTTCAAATAG 57.294 30.769 0.00 0.00 35.56 1.73
249 250 7.825270 TCATGGCTCATTTTATTGCTTTCAAAT 59.175 29.630 0.00 0.00 35.56 2.32
250 251 7.160049 TCATGGCTCATTTTATTGCTTTCAAA 58.840 30.769 0.00 0.00 35.56 2.69
253 254 6.202188 CCATCATGGCTCATTTTATTGCTTTC 59.798 38.462 0.00 0.00 0.00 2.62
254 255 6.053005 CCATCATGGCTCATTTTATTGCTTT 58.947 36.000 0.00 0.00 0.00 3.51
256 257 5.209818 CCATCATGGCTCATTTTATTGCT 57.790 39.130 0.00 0.00 0.00 3.91
289 290 4.855340 TGGAACTTGAGTGAGACCTTTTT 58.145 39.130 0.00 0.00 0.00 1.94
291 292 4.503714 TTGGAACTTGAGTGAGACCTTT 57.496 40.909 0.00 0.00 0.00 3.11
293 294 4.200092 GTTTTGGAACTTGAGTGAGACCT 58.800 43.478 0.00 0.00 32.91 3.85
295 296 5.757850 ATGTTTTGGAACTTGAGTGAGAC 57.242 39.130 0.00 0.00 36.70 3.36
298 299 7.397892 TTTGTATGTTTTGGAACTTGAGTGA 57.602 32.000 0.00 0.00 36.70 3.41
339 340 9.020731 AGATCCGTGTAAAATTTCCTTTTATGT 57.979 29.630 0.00 0.00 40.48 2.29
340 341 9.855021 AAGATCCGTGTAAAATTTCCTTTTATG 57.145 29.630 0.00 0.00 40.48 1.90
342 343 8.231837 CGAAGATCCGTGTAAAATTTCCTTTTA 58.768 33.333 0.00 0.00 38.09 1.52
344 345 6.206048 ACGAAGATCCGTGTAAAATTTCCTTT 59.794 34.615 0.00 0.00 41.70 3.11
345 346 5.704053 ACGAAGATCCGTGTAAAATTTCCTT 59.296 36.000 0.00 0.00 41.70 3.36
346 347 5.243207 ACGAAGATCCGTGTAAAATTTCCT 58.757 37.500 0.00 0.00 41.70 3.36
347 348 5.541098 ACGAAGATCCGTGTAAAATTTCC 57.459 39.130 0.00 0.00 41.70 3.13
364 365 5.163784 TGAGTCCGTAAGATCTTACACGAAG 60.164 44.000 33.89 21.77 44.12 3.79
366 367 4.256110 TGAGTCCGTAAGATCTTACACGA 58.744 43.478 33.89 27.05 44.12 4.35
367 368 4.094590 ACTGAGTCCGTAAGATCTTACACG 59.905 45.833 33.89 26.94 44.12 4.49
368 369 5.448904 GGACTGAGTCCGTAAGATCTTACAC 60.449 48.000 33.89 27.11 43.14 2.90
369 370 4.639310 GGACTGAGTCCGTAAGATCTTACA 59.361 45.833 33.89 19.74 43.14 2.41
370 371 5.172460 GGACTGAGTCCGTAAGATCTTAC 57.828 47.826 28.53 28.53 43.14 2.34
387 388 5.065731 GGAATTGCTAAATCTCAGTGGACTG 59.934 44.000 0.00 0.00 45.08 3.51
388 389 5.189180 GGAATTGCTAAATCTCAGTGGACT 58.811 41.667 0.00 0.00 0.00 3.85
390 391 5.178096 TGGAATTGCTAAATCTCAGTGGA 57.822 39.130 0.00 0.00 0.00 4.02
392 393 8.030692 TGAAAATGGAATTGCTAAATCTCAGTG 58.969 33.333 0.00 0.00 36.10 3.66
393 394 8.125978 TGAAAATGGAATTGCTAAATCTCAGT 57.874 30.769 0.00 0.00 36.10 3.41
394 395 8.991243 TTGAAAATGGAATTGCTAAATCTCAG 57.009 30.769 0.00 0.00 36.10 3.35
395 396 9.775854 TTTTGAAAATGGAATTGCTAAATCTCA 57.224 25.926 0.00 0.00 36.10 3.27
404 405 8.891720 TGCCTTATATTTTGAAAATGGAATTGC 58.108 29.630 13.08 11.46 36.10 3.56
424 425 9.609346 GGTTTTAGATAGTCAAACTATGCCTTA 57.391 33.333 4.41 0.00 41.21 2.69
426 427 7.630082 TGGTTTTAGATAGTCAAACTATGCCT 58.370 34.615 4.41 0.21 41.21 4.75
428 429 9.109393 TCATGGTTTTAGATAGTCAAACTATGC 57.891 33.333 12.80 0.00 43.62 3.14
435 436 8.956426 GGTCAAATCATGGTTTTAGATAGTCAA 58.044 33.333 0.00 0.00 0.00 3.18
436 437 7.279981 CGGTCAAATCATGGTTTTAGATAGTCA 59.720 37.037 0.00 0.00 0.00 3.41
437 438 7.630924 CGGTCAAATCATGGTTTTAGATAGTC 58.369 38.462 0.00 0.00 0.00 2.59
438 439 6.038271 GCGGTCAAATCATGGTTTTAGATAGT 59.962 38.462 0.00 0.00 0.00 2.12
440 441 5.298276 GGCGGTCAAATCATGGTTTTAGATA 59.702 40.000 0.00 0.00 0.00 1.98
441 442 4.097892 GGCGGTCAAATCATGGTTTTAGAT 59.902 41.667 0.00 0.00 0.00 1.98
442 443 3.442273 GGCGGTCAAATCATGGTTTTAGA 59.558 43.478 0.00 0.00 0.00 2.10
444 445 3.157881 TGGCGGTCAAATCATGGTTTTA 58.842 40.909 0.00 0.00 0.00 1.52
445 446 1.967066 TGGCGGTCAAATCATGGTTTT 59.033 42.857 0.00 0.00 0.00 2.43
446 447 1.626686 TGGCGGTCAAATCATGGTTT 58.373 45.000 0.00 0.00 0.00 3.27
448 449 1.626686 TTTGGCGGTCAAATCATGGT 58.373 45.000 3.18 0.00 40.14 3.55
456 457 2.570415 TTGGACTATTTGGCGGTCAA 57.430 45.000 0.00 0.00 0.00 3.18
457 458 2.799126 ATTGGACTATTTGGCGGTCA 57.201 45.000 0.00 0.00 0.00 4.02
458 459 8.612619 CATATATTATTGGACTATTTGGCGGTC 58.387 37.037 0.00 0.00 0.00 4.79
461 462 7.417612 GGCATATATTATTGGACTATTTGGCG 58.582 38.462 0.00 0.00 0.00 5.69
462 463 7.341769 TGGGCATATATTATTGGACTATTTGGC 59.658 37.037 0.00 0.00 32.47 4.52
465 466 9.995594 ACATGGGCATATATTATTGGACTATTT 57.004 29.630 0.00 0.00 0.00 1.40
466 467 9.995594 AACATGGGCATATATTATTGGACTATT 57.004 29.630 0.00 0.00 0.00 1.73
468 469 9.899661 GTAACATGGGCATATATTATTGGACTA 57.100 33.333 0.00 0.00 0.00 2.59
469 470 8.390143 TGTAACATGGGCATATATTATTGGACT 58.610 33.333 0.00 0.00 0.00 3.85
470 471 8.458843 GTGTAACATGGGCATATATTATTGGAC 58.541 37.037 0.00 0.00 36.32 4.02
471 472 8.166726 TGTGTAACATGGGCATATATTATTGGA 58.833 33.333 0.00 0.00 45.67 3.53
472 473 8.347004 TGTGTAACATGGGCATATATTATTGG 57.653 34.615 0.00 0.00 45.67 3.16
490 491 7.699566 TCTAGTGGTGTTCATTTTTGTGTAAC 58.300 34.615 0.00 0.00 37.35 2.50
491 492 7.867305 TCTAGTGGTGTTCATTTTTGTGTAA 57.133 32.000 0.00 0.00 0.00 2.41
492 493 8.349245 CAATCTAGTGGTGTTCATTTTTGTGTA 58.651 33.333 0.00 0.00 0.00 2.90
493 494 6.959639 ATCTAGTGGTGTTCATTTTTGTGT 57.040 33.333 0.00 0.00 0.00 3.72
494 495 7.424803 TCAATCTAGTGGTGTTCATTTTTGTG 58.575 34.615 0.00 0.00 0.00 3.33
499 500 9.685276 TGAATATCAATCTAGTGGTGTTCATTT 57.315 29.630 2.78 0.00 35.55 2.32
500 501 9.685276 TTGAATATCAATCTAGTGGTGTTCATT 57.315 29.630 6.62 0.00 38.87 2.57
502 503 9.513906 TTTTGAATATCAATCTAGTGGTGTTCA 57.486 29.630 2.78 2.78 37.79 3.18
503 504 9.994432 CTTTTGAATATCAATCTAGTGGTGTTC 57.006 33.333 0.00 0.00 36.11 3.18
506 507 7.912250 GTGCTTTTGAATATCAATCTAGTGGTG 59.088 37.037 0.00 0.00 36.11 4.17
508 509 8.218338 AGTGCTTTTGAATATCAATCTAGTGG 57.782 34.615 0.00 0.00 36.11 4.00
539 540 9.722056 GGTCAATGATTACAGAAACATAATCAC 57.278 33.333 8.44 0.00 45.74 3.06
540 541 8.611757 CGGTCAATGATTACAGAAACATAATCA 58.388 33.333 8.64 8.64 46.52 2.57
541 542 8.826710 TCGGTCAATGATTACAGAAACATAATC 58.173 33.333 0.00 0.00 38.00 1.75
542 543 8.731275 TCGGTCAATGATTACAGAAACATAAT 57.269 30.769 0.00 0.00 0.00 1.28
543 544 8.554835 TTCGGTCAATGATTACAGAAACATAA 57.445 30.769 0.00 0.00 28.90 1.90
545 546 7.630242 ATTCGGTCAATGATTACAGAAACAT 57.370 32.000 0.00 0.00 34.33 2.71
546 547 8.731275 ATATTCGGTCAATGATTACAGAAACA 57.269 30.769 0.00 0.00 34.33 2.83
601 602 8.784994 TGTTTCGAAAATATAAGGTGTAGCAAA 58.215 29.630 13.10 0.00 0.00 3.68
602 603 8.325421 TGTTTCGAAAATATAAGGTGTAGCAA 57.675 30.769 13.10 0.00 0.00 3.91
603 604 7.908827 TGTTTCGAAAATATAAGGTGTAGCA 57.091 32.000 13.10 0.00 0.00 3.49
607 608 8.827677 GCTCTATGTTTCGAAAATATAAGGTGT 58.172 33.333 13.10 0.00 0.00 4.16
608 609 9.046296 AGCTCTATGTTTCGAAAATATAAGGTG 57.954 33.333 13.10 6.35 0.00 4.00
633 634 8.877808 TCATAGCTATGACTGAATACACAAAG 57.122 34.615 28.69 1.32 37.76 2.77
657 658 3.682858 TGCTTCGCTAACATTTAGTGGTC 59.317 43.478 6.65 0.00 0.00 4.02
720 722 3.253677 GTCATGAGTACCATCGACCCTAG 59.746 52.174 0.00 0.00 31.94 3.02
832 834 4.877773 AGAGAGAGAGAGAGAGAGAGAGT 58.122 47.826 0.00 0.00 0.00 3.24
834 836 4.219115 GGAGAGAGAGAGAGAGAGAGAGA 58.781 52.174 0.00 0.00 0.00 3.10
842 844 1.275421 TGCCGGGAGAGAGAGAGAGA 61.275 60.000 2.18 0.00 0.00 3.10
843 845 1.101049 GTGCCGGGAGAGAGAGAGAG 61.101 65.000 2.18 0.00 0.00 3.20
844 846 1.077357 GTGCCGGGAGAGAGAGAGA 60.077 63.158 2.18 0.00 0.00 3.10
845 847 2.124693 GGTGCCGGGAGAGAGAGAG 61.125 68.421 2.18 0.00 0.00 3.20
846 848 2.043852 GGTGCCGGGAGAGAGAGA 60.044 66.667 2.18 0.00 0.00 3.10
848 850 1.758514 GATGGTGCCGGGAGAGAGA 60.759 63.158 2.18 0.00 0.00 3.10
849 851 1.760086 AGATGGTGCCGGGAGAGAG 60.760 63.158 2.18 0.00 0.00 3.20
851 853 2.503061 CAGATGGTGCCGGGAGAG 59.497 66.667 2.18 0.00 0.00 3.20
852 854 3.083349 CCAGATGGTGCCGGGAGA 61.083 66.667 2.18 0.00 0.00 3.71
862 864 1.800586 CACACGAACAGAACCAGATGG 59.199 52.381 0.00 0.00 42.17 3.51
936 938 0.392461 AGGAATTTCTTGGCGCGCTA 60.392 50.000 32.29 24.64 0.00 4.26
959 961 3.317993 ACGAGAAATTCAAGGTTGGTTGG 59.682 43.478 0.00 0.00 0.00 3.77
966 968 4.627467 CGATCTTCACGAGAAATTCAAGGT 59.373 41.667 0.00 0.00 38.06 3.50
979 981 1.192436 GCCGTACGTCGATCTTCACG 61.192 60.000 15.21 7.06 42.86 4.35
997 999 0.729116 CATGTGTCGGACTCCATTGC 59.271 55.000 9.88 0.00 0.00 3.56
1008 1010 2.447887 GCTGAGGTCGCATGTGTCG 61.448 63.158 6.09 0.00 0.00 4.35
1137 1139 0.034186 TGATCTTCATGGCCACCACC 60.034 55.000 8.16 0.00 35.80 4.61
1390 1392 4.354212 CACGTCGTGCCTTGCGTG 62.354 66.667 13.22 0.00 46.28 5.34
1719 1721 0.615850 AGAAGAAGCCCTGCCTGTAC 59.384 55.000 0.00 0.00 0.00 2.90
2257 2259 1.364171 GCGCCATGAGGTAGACGAT 59.636 57.895 0.00 0.00 37.19 3.73
2311 2313 1.429463 GACAGGTTCATGTCGGTGAC 58.571 55.000 2.03 0.00 40.18 3.67
3218 4207 8.697507 ACCAAGTCTCACTGAGATTTAAAAAT 57.302 30.769 14.57 0.00 40.98 1.82
3220 4209 9.793259 ATAACCAAGTCTCACTGAGATTTAAAA 57.207 29.630 14.57 4.24 40.98 1.52
3221 4210 9.219603 CATAACCAAGTCTCACTGAGATTTAAA 57.780 33.333 14.57 0.00 40.98 1.52
3222 4211 8.375506 ACATAACCAAGTCTCACTGAGATTTAA 58.624 33.333 14.57 4.25 40.98 1.52
3342 4345 1.761198 GGTGTGGGTAGGTATCAGTCC 59.239 57.143 0.00 0.00 0.00 3.85
3343 4346 1.761198 GGGTGTGGGTAGGTATCAGTC 59.239 57.143 0.00 0.00 0.00 3.51
3349 4352 4.357313 AGAAATAGGGTGTGGGTAGGTA 57.643 45.455 0.00 0.00 0.00 3.08
3351 4354 4.720273 ACTTAGAAATAGGGTGTGGGTAGG 59.280 45.833 0.00 0.00 0.00 3.18
3355 4358 6.248569 ACATACTTAGAAATAGGGTGTGGG 57.751 41.667 0.00 0.00 0.00 4.61
3386 4389 4.826274 TCTTTGTATGCCTACTCTGCTT 57.174 40.909 0.74 0.00 0.00 3.91
3388 4391 6.094048 TCAAAATCTTTGTATGCCTACTCTGC 59.906 38.462 0.74 0.00 0.00 4.26
3824 4827 0.815734 ACGACTGGGACGAAATCGAT 59.184 50.000 10.16 0.00 43.02 3.59
3855 4858 1.825474 AGGAGAGTATGACCACGTTGG 59.175 52.381 2.92 2.92 45.02 3.77
3860 4863 1.410882 GGCAGAGGAGAGTATGACCAC 59.589 57.143 0.00 0.00 0.00 4.16
3861 4864 1.289231 AGGCAGAGGAGAGTATGACCA 59.711 52.381 0.00 0.00 0.00 4.02
3863 4866 3.319689 GGTTAGGCAGAGGAGAGTATGAC 59.680 52.174 0.00 0.00 0.00 3.06
3864 4867 3.052869 TGGTTAGGCAGAGGAGAGTATGA 60.053 47.826 0.00 0.00 0.00 2.15
3866 4869 3.205507 TCTGGTTAGGCAGAGGAGAGTAT 59.794 47.826 0.00 0.00 0.00 2.12
3867 4870 2.581246 TCTGGTTAGGCAGAGGAGAGTA 59.419 50.000 0.00 0.00 0.00 2.59
3868 4871 1.359474 TCTGGTTAGGCAGAGGAGAGT 59.641 52.381 0.00 0.00 0.00 3.24
3900 4910 1.219124 GCGCATGACAGGAGGAAGA 59.781 57.895 0.30 0.00 0.00 2.87
3912 4922 0.248215 GGTCGATTTTCAGGCGCATG 60.248 55.000 17.42 17.42 0.00 4.06
3915 4925 0.239879 TTTGGTCGATTTTCAGGCGC 59.760 50.000 0.00 0.00 0.00 6.53
3925 4937 4.011517 ACGGGCGGTTTGGTCGAT 62.012 61.111 0.00 0.00 0.00 3.59
3926 4938 4.973055 CACGGGCGGTTTGGTCGA 62.973 66.667 0.00 0.00 0.00 4.20
3928 4940 2.359478 ATCACGGGCGGTTTGGTC 60.359 61.111 0.00 0.00 0.00 4.02
3929 4941 2.671619 CATCACGGGCGGTTTGGT 60.672 61.111 0.00 0.00 0.00 3.67
3941 4953 1.368641 TACAGCAACATCGGCATCAC 58.631 50.000 0.00 0.00 0.00 3.06
3942 4954 2.009051 CTTACAGCAACATCGGCATCA 58.991 47.619 0.00 0.00 0.00 3.07
3943 4955 2.030946 GTCTTACAGCAACATCGGCATC 59.969 50.000 0.00 0.00 0.00 3.91
3944 4956 2.009774 GTCTTACAGCAACATCGGCAT 58.990 47.619 0.00 0.00 0.00 4.40
3945 4957 1.270571 TGTCTTACAGCAACATCGGCA 60.271 47.619 0.00 0.00 0.00 5.69
3946 4958 1.438651 TGTCTTACAGCAACATCGGC 58.561 50.000 0.00 0.00 0.00 5.54
3947 4959 5.351465 ACTTATTGTCTTACAGCAACATCGG 59.649 40.000 0.00 0.00 0.00 4.18
3948 4960 6.408858 ACTTATTGTCTTACAGCAACATCG 57.591 37.500 0.00 0.00 0.00 3.84
3949 4961 8.905702 CAAAACTTATTGTCTTACAGCAACATC 58.094 33.333 0.00 0.00 0.00 3.06
3950 4962 7.867403 CCAAAACTTATTGTCTTACAGCAACAT 59.133 33.333 0.00 0.00 0.00 2.71
3951 4963 7.199766 CCAAAACTTATTGTCTTACAGCAACA 58.800 34.615 0.00 0.00 0.00 3.33
3952 4964 6.640907 CCCAAAACTTATTGTCTTACAGCAAC 59.359 38.462 0.00 0.00 0.00 4.17
3953 4965 6.239176 CCCCAAAACTTATTGTCTTACAGCAA 60.239 38.462 0.00 0.00 0.00 3.91
3954 4966 5.242838 CCCCAAAACTTATTGTCTTACAGCA 59.757 40.000 0.00 0.00 0.00 4.41
3955 4967 5.336451 CCCCCAAAACTTATTGTCTTACAGC 60.336 44.000 0.00 0.00 0.00 4.40
3956 4968 6.007703 TCCCCCAAAACTTATTGTCTTACAG 58.992 40.000 0.00 0.00 0.00 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.