Multiple sequence alignment - TraesCS6B01G058100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G058100 chr6B 100.000 3269 0 0 1 3269 38626753 38623485 0.000000e+00 6037.0
1 TraesCS6B01G058100 chr6B 85.881 1367 156 17 979 2328 37652984 37651638 0.000000e+00 1421.0
2 TraesCS6B01G058100 chr6B 86.402 1287 152 17 999 2273 37644980 37643705 0.000000e+00 1386.0
3 TraesCS6B01G058100 chr6B 86.153 1271 150 18 999 2256 38541443 38540186 0.000000e+00 1349.0
4 TraesCS6B01G058100 chr6B 81.905 735 89 27 1626 2326 37326108 37326832 6.080000e-162 580.0
5 TraesCS6B01G058100 chr6B 86.104 403 46 3 2629 3029 584220861 584221255 3.010000e-115 425.0
6 TraesCS6B01G058100 chr6D 92.201 1949 121 15 1335 3258 23748599 23746657 0.000000e+00 2728.0
7 TraesCS6B01G058100 chr6D 86.960 1296 146 12 979 2258 23642217 23640929 0.000000e+00 1435.0
8 TraesCS6B01G058100 chr6D 86.813 1274 140 21 999 2258 23632147 23630888 0.000000e+00 1397.0
9 TraesCS6B01G058100 chr6D 92.095 506 16 8 761 1265 23749074 23748592 0.000000e+00 691.0
10 TraesCS6B01G058100 chr6D 94.275 262 14 1 499 760 23749498 23749238 1.830000e-107 399.0
11 TraesCS6B01G058100 chr6A 86.940 1294 150 13 979 2258 22200999 22199711 0.000000e+00 1435.0
12 TraesCS6B01G058100 chr6A 86.285 1276 143 19 999 2258 22193459 22192200 0.000000e+00 1358.0
13 TraesCS6B01G058100 chr6A 85.294 1292 144 26 1001 2275 22171835 22173097 0.000000e+00 1291.0
14 TraesCS6B01G058100 chr6A 86.150 426 35 7 2502 2903 22275589 22275164 3.870000e-119 438.0
15 TraesCS6B01G058100 chr6A 85.542 415 50 3 2629 3041 536439440 536439034 3.010000e-115 425.0
16 TraesCS6B01G058100 chr6A 86.901 313 37 2 83 395 588602121 588602429 6.710000e-92 348.0
17 TraesCS6B01G058100 chr6A 96.226 53 2 0 2536 2588 22350723 22350671 1.620000e-13 87.9
18 TraesCS6B01G058100 chr3B 93.023 430 22 4 866 1294 745192858 745192436 3.580000e-174 621.0
19 TraesCS6B01G058100 chr7D 87.382 317 34 5 81 395 258232059 258231747 3.100000e-95 359.0
20 TraesCS6B01G058100 chr7D 83.005 406 49 15 1885 2275 59704559 59704959 1.870000e-92 350.0
21 TraesCS6B01G058100 chr7D 86.018 329 42 4 79 405 384403494 384403820 1.870000e-92 350.0
22 TraesCS6B01G058100 chr7D 86.111 324 39 5 87 410 265507771 265508088 8.680000e-91 344.0
23 TraesCS6B01G058100 chr7D 81.600 250 31 13 2036 2275 59707084 59707328 3.330000e-45 193.0
24 TraesCS6B01G058100 chr1A 87.662 308 34 2 87 394 540723171 540722868 4.010000e-94 355.0
25 TraesCS6B01G058100 chr5D 86.984 315 35 4 87 401 269962529 269962837 1.870000e-92 350.0
26 TraesCS6B01G058100 chr5A 86.751 317 39 2 79 395 549204330 549204643 1.870000e-92 350.0
27 TraesCS6B01G058100 chr4A 87.338 308 36 2 81 388 208931429 208931125 1.870000e-92 350.0
28 TraesCS6B01G058100 chr4B 87.055 309 38 1 87 395 461583423 461583117 6.710000e-92 348.0
29 TraesCS6B01G058100 chrUn 80.071 281 28 19 2016 2275 80173398 80173671 2.000000e-42 183.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G058100 chr6B 38623485 38626753 3268 True 6037.000000 6037 100.0000 1 3269 1 chr6B.!!$R4 3268
1 TraesCS6B01G058100 chr6B 37651638 37652984 1346 True 1421.000000 1421 85.8810 979 2328 1 chr6B.!!$R2 1349
2 TraesCS6B01G058100 chr6B 37643705 37644980 1275 True 1386.000000 1386 86.4020 999 2273 1 chr6B.!!$R1 1274
3 TraesCS6B01G058100 chr6B 38540186 38541443 1257 True 1349.000000 1349 86.1530 999 2256 1 chr6B.!!$R3 1257
4 TraesCS6B01G058100 chr6B 37326108 37326832 724 False 580.000000 580 81.9050 1626 2326 1 chr6B.!!$F1 700
5 TraesCS6B01G058100 chr6D 23640929 23642217 1288 True 1435.000000 1435 86.9600 979 2258 1 chr6D.!!$R2 1279
6 TraesCS6B01G058100 chr6D 23630888 23632147 1259 True 1397.000000 1397 86.8130 999 2258 1 chr6D.!!$R1 1259
7 TraesCS6B01G058100 chr6D 23746657 23749498 2841 True 1272.666667 2728 92.8570 499 3258 3 chr6D.!!$R3 2759
8 TraesCS6B01G058100 chr6A 22199711 22200999 1288 True 1435.000000 1435 86.9400 979 2258 1 chr6A.!!$R2 1279
9 TraesCS6B01G058100 chr6A 22192200 22193459 1259 True 1358.000000 1358 86.2850 999 2258 1 chr6A.!!$R1 1259
10 TraesCS6B01G058100 chr6A 22171835 22173097 1262 False 1291.000000 1291 85.2940 1001 2275 1 chr6A.!!$F1 1274
11 TraesCS6B01G058100 chr7D 59704559 59707328 2769 False 271.500000 350 82.3025 1885 2275 2 chr7D.!!$F3 390

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
37 38 0.107165 AAGGCCCCGTTCATAGAAGC 60.107 55.0 0.0 0.0 0.0 3.86 F
1556 1721 0.108424 GTGACGAAGCAGCTCATCCT 60.108 55.0 0.0 0.0 0.0 3.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1779 1944 0.034380 ATGCAGCTTGCTGATCCACT 60.034 50.0 24.67 3.31 45.31 4.00 R
2833 3451 0.112995 TCTGCATGCCCTTCACCTTT 59.887 50.0 16.68 0.00 0.00 3.11 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 2.122783 TCAAGTATTTGAAGGCCCCG 57.877 50.000 0.00 0.00 40.26 5.73
27 28 1.353022 TCAAGTATTTGAAGGCCCCGT 59.647 47.619 0.00 0.00 40.26 5.28
28 29 2.167662 CAAGTATTTGAAGGCCCCGTT 58.832 47.619 0.00 0.00 36.36 4.44
29 30 2.124277 AGTATTTGAAGGCCCCGTTC 57.876 50.000 0.00 0.00 0.00 3.95
30 31 1.353022 AGTATTTGAAGGCCCCGTTCA 59.647 47.619 0.00 0.00 31.98 3.18
31 32 2.025321 AGTATTTGAAGGCCCCGTTCAT 60.025 45.455 6.73 0.00 33.95 2.57
32 33 2.818751 ATTTGAAGGCCCCGTTCATA 57.181 45.000 6.73 3.22 33.95 2.15
33 34 2.122783 TTTGAAGGCCCCGTTCATAG 57.877 50.000 6.73 0.00 33.95 2.23
34 35 1.281419 TTGAAGGCCCCGTTCATAGA 58.719 50.000 6.73 0.00 33.95 1.98
35 36 1.281419 TGAAGGCCCCGTTCATAGAA 58.719 50.000 0.00 0.00 0.00 2.10
36 37 1.209504 TGAAGGCCCCGTTCATAGAAG 59.790 52.381 0.00 0.00 0.00 2.85
37 38 0.107165 AAGGCCCCGTTCATAGAAGC 60.107 55.000 0.00 0.00 0.00 3.86
38 39 1.223487 GGCCCCGTTCATAGAAGCA 59.777 57.895 0.00 0.00 0.00 3.91
39 40 0.179018 GGCCCCGTTCATAGAAGCAT 60.179 55.000 0.00 0.00 0.00 3.79
40 41 1.230324 GCCCCGTTCATAGAAGCATC 58.770 55.000 0.00 0.00 0.00 3.91
41 42 1.475034 GCCCCGTTCATAGAAGCATCA 60.475 52.381 0.00 0.00 0.00 3.07
42 43 2.917933 CCCCGTTCATAGAAGCATCAA 58.082 47.619 0.00 0.00 0.00 2.57
43 44 3.480470 CCCCGTTCATAGAAGCATCAAT 58.520 45.455 0.00 0.00 0.00 2.57
44 45 3.251729 CCCCGTTCATAGAAGCATCAATG 59.748 47.826 0.00 0.00 0.00 2.82
45 46 3.879295 CCCGTTCATAGAAGCATCAATGT 59.121 43.478 0.00 0.00 0.00 2.71
46 47 4.336433 CCCGTTCATAGAAGCATCAATGTT 59.664 41.667 0.00 0.00 0.00 2.71
47 48 5.527214 CCCGTTCATAGAAGCATCAATGTTA 59.473 40.000 0.00 0.00 0.00 2.41
48 49 6.293081 CCCGTTCATAGAAGCATCAATGTTAG 60.293 42.308 0.00 0.00 0.00 2.34
49 50 6.479990 CCGTTCATAGAAGCATCAATGTTAGA 59.520 38.462 0.00 0.00 0.00 2.10
50 51 7.011389 CCGTTCATAGAAGCATCAATGTTAGAA 59.989 37.037 0.00 0.00 0.00 2.10
51 52 8.060679 CGTTCATAGAAGCATCAATGTTAGAAG 58.939 37.037 0.00 0.00 0.00 2.85
52 53 8.341173 GTTCATAGAAGCATCAATGTTAGAAGG 58.659 37.037 0.00 0.00 0.00 3.46
53 54 6.484643 TCATAGAAGCATCAATGTTAGAAGGC 59.515 38.462 0.00 0.00 0.00 4.35
54 55 4.592942 AGAAGCATCAATGTTAGAAGGCA 58.407 39.130 0.00 0.00 0.00 4.75
55 56 5.198965 AGAAGCATCAATGTTAGAAGGCAT 58.801 37.500 0.00 0.00 0.00 4.40
56 57 4.913335 AGCATCAATGTTAGAAGGCATG 57.087 40.909 0.00 0.00 0.00 4.06
57 58 3.067742 AGCATCAATGTTAGAAGGCATGC 59.932 43.478 9.90 9.90 36.47 4.06
58 59 3.797865 GCATCAATGTTAGAAGGCATGCC 60.798 47.826 30.12 30.12 31.17 4.40
70 71 3.214696 AGGCATGCCTAGGTACATTTC 57.785 47.619 37.99 5.47 46.14 2.17
71 72 2.509548 AGGCATGCCTAGGTACATTTCA 59.490 45.455 37.99 0.00 46.14 2.69
72 73 3.053693 AGGCATGCCTAGGTACATTTCAA 60.054 43.478 37.99 0.00 46.14 2.69
73 74 3.891366 GGCATGCCTAGGTACATTTCAAT 59.109 43.478 29.98 0.00 0.00 2.57
74 75 4.342092 GGCATGCCTAGGTACATTTCAATT 59.658 41.667 29.98 0.00 0.00 2.32
75 76 5.284079 GCATGCCTAGGTACATTTCAATTG 58.716 41.667 11.31 0.00 0.00 2.32
76 77 5.067674 GCATGCCTAGGTACATTTCAATTGA 59.932 40.000 11.31 3.38 0.00 2.57
77 78 6.732154 CATGCCTAGGTACATTTCAATTGAG 58.268 40.000 11.31 0.00 0.00 3.02
78 79 6.061022 TGCCTAGGTACATTTCAATTGAGA 57.939 37.500 11.31 4.49 0.00 3.27
79 80 6.480763 TGCCTAGGTACATTTCAATTGAGAA 58.519 36.000 11.31 6.85 0.00 2.87
80 81 6.374333 TGCCTAGGTACATTTCAATTGAGAAC 59.626 38.462 11.31 0.00 0.00 3.01
81 82 6.599638 GCCTAGGTACATTTCAATTGAGAACT 59.400 38.462 11.31 4.11 0.00 3.01
82 83 7.121315 GCCTAGGTACATTTCAATTGAGAACTT 59.879 37.037 11.31 0.00 0.00 2.66
83 84 9.014297 CCTAGGTACATTTCAATTGAGAACTTT 57.986 33.333 8.41 0.00 0.00 2.66
87 88 9.076596 GGTACATTTCAATTGAGAACTTTATGC 57.923 33.333 8.41 0.00 0.00 3.14
88 89 9.076596 GTACATTTCAATTGAGAACTTTATGCC 57.923 33.333 8.41 0.00 0.00 4.40
89 90 7.899973 ACATTTCAATTGAGAACTTTATGCCT 58.100 30.769 8.41 0.00 0.00 4.75
90 91 8.031277 ACATTTCAATTGAGAACTTTATGCCTC 58.969 33.333 8.41 0.00 0.00 4.70
91 92 6.515272 TTCAATTGAGAACTTTATGCCTCC 57.485 37.500 8.41 0.00 0.00 4.30
92 93 5.819991 TCAATTGAGAACTTTATGCCTCCT 58.180 37.500 3.38 0.00 0.00 3.69
93 94 6.248433 TCAATTGAGAACTTTATGCCTCCTT 58.752 36.000 3.38 0.00 0.00 3.36
94 95 6.721208 TCAATTGAGAACTTTATGCCTCCTTT 59.279 34.615 3.38 0.00 0.00 3.11
95 96 5.964958 TTGAGAACTTTATGCCTCCTTTG 57.035 39.130 0.00 0.00 0.00 2.77
96 97 4.335416 TGAGAACTTTATGCCTCCTTTGG 58.665 43.478 0.00 0.00 0.00 3.28
97 98 4.202567 TGAGAACTTTATGCCTCCTTTGGT 60.203 41.667 0.00 0.00 0.00 3.67
98 99 4.740902 AGAACTTTATGCCTCCTTTGGTT 58.259 39.130 0.00 0.00 0.00 3.67
99 100 5.147767 AGAACTTTATGCCTCCTTTGGTTT 58.852 37.500 0.00 0.00 0.00 3.27
100 101 4.871933 ACTTTATGCCTCCTTTGGTTTG 57.128 40.909 0.00 0.00 0.00 2.93
101 102 4.479158 ACTTTATGCCTCCTTTGGTTTGA 58.521 39.130 0.00 0.00 0.00 2.69
102 103 4.898861 ACTTTATGCCTCCTTTGGTTTGAA 59.101 37.500 0.00 0.00 0.00 2.69
103 104 5.011023 ACTTTATGCCTCCTTTGGTTTGAAG 59.989 40.000 0.00 0.00 0.00 3.02
104 105 1.703411 TGCCTCCTTTGGTTTGAAGG 58.297 50.000 0.00 0.00 44.06 3.46
116 117 8.811994 CCTTTGGTTTGAAGGAATTTTATAGGA 58.188 33.333 0.00 0.00 45.25 2.94
170 171 6.474140 TTTTTCCTTTACTTCCCTTTGGTC 57.526 37.500 0.00 0.00 0.00 4.02
171 172 5.397553 TTTCCTTTACTTCCCTTTGGTCT 57.602 39.130 0.00 0.00 0.00 3.85
172 173 4.367039 TCCTTTACTTCCCTTTGGTCTG 57.633 45.455 0.00 0.00 0.00 3.51
173 174 3.720002 TCCTTTACTTCCCTTTGGTCTGT 59.280 43.478 0.00 0.00 0.00 3.41
174 175 4.909088 TCCTTTACTTCCCTTTGGTCTGTA 59.091 41.667 0.00 0.00 0.00 2.74
175 176 5.012768 TCCTTTACTTCCCTTTGGTCTGTAG 59.987 44.000 0.00 0.00 0.00 2.74
176 177 4.903045 TTACTTCCCTTTGGTCTGTAGG 57.097 45.455 0.00 0.00 0.00 3.18
177 178 2.986050 ACTTCCCTTTGGTCTGTAGGA 58.014 47.619 0.00 0.00 0.00 2.94
178 179 3.323775 ACTTCCCTTTGGTCTGTAGGAA 58.676 45.455 0.00 0.00 32.65 3.36
179 180 3.916989 ACTTCCCTTTGGTCTGTAGGAAT 59.083 43.478 0.00 0.00 33.17 3.01
180 181 5.098663 ACTTCCCTTTGGTCTGTAGGAATA 58.901 41.667 0.00 0.00 33.17 1.75
181 182 5.189934 ACTTCCCTTTGGTCTGTAGGAATAG 59.810 44.000 0.00 0.00 33.17 1.73
182 183 4.955335 TCCCTTTGGTCTGTAGGAATAGA 58.045 43.478 0.00 0.00 0.00 1.98
183 184 5.347124 TCCCTTTGGTCTGTAGGAATAGAA 58.653 41.667 0.00 0.00 0.00 2.10
184 185 5.970640 TCCCTTTGGTCTGTAGGAATAGAAT 59.029 40.000 0.00 0.00 0.00 2.40
185 186 6.099845 TCCCTTTGGTCTGTAGGAATAGAATC 59.900 42.308 0.00 0.00 0.00 2.52
186 187 6.292150 CCTTTGGTCTGTAGGAATAGAATCC 58.708 44.000 0.00 0.00 39.96 3.01
220 221 4.939052 GGAATTCTTCCTATCCTCGACA 57.061 45.455 5.23 0.00 46.57 4.35
221 222 5.476091 GGAATTCTTCCTATCCTCGACAT 57.524 43.478 5.23 0.00 46.57 3.06
222 223 5.859495 GGAATTCTTCCTATCCTCGACATT 58.141 41.667 5.23 0.00 46.57 2.71
223 224 6.292150 GGAATTCTTCCTATCCTCGACATTT 58.708 40.000 5.23 0.00 46.57 2.32
224 225 6.425417 GGAATTCTTCCTATCCTCGACATTTC 59.575 42.308 5.23 0.00 46.57 2.17
225 226 5.932619 TTCTTCCTATCCTCGACATTTCA 57.067 39.130 0.00 0.00 0.00 2.69
226 227 6.485830 TTCTTCCTATCCTCGACATTTCAT 57.514 37.500 0.00 0.00 0.00 2.57
227 228 7.597288 TTCTTCCTATCCTCGACATTTCATA 57.403 36.000 0.00 0.00 0.00 2.15
228 229 7.220741 TCTTCCTATCCTCGACATTTCATAG 57.779 40.000 0.00 0.00 0.00 2.23
229 230 6.778069 TCTTCCTATCCTCGACATTTCATAGT 59.222 38.462 0.00 0.00 0.00 2.12
230 231 7.942894 TCTTCCTATCCTCGACATTTCATAGTA 59.057 37.037 0.00 0.00 0.00 1.82
231 232 8.473358 TTCCTATCCTCGACATTTCATAGTAA 57.527 34.615 0.00 0.00 0.00 2.24
232 233 8.473358 TCCTATCCTCGACATTTCATAGTAAA 57.527 34.615 0.00 0.00 0.00 2.01
233 234 8.920174 TCCTATCCTCGACATTTCATAGTAAAA 58.080 33.333 0.00 0.00 0.00 1.52
234 235 9.712305 CCTATCCTCGACATTTCATAGTAAAAT 57.288 33.333 0.00 0.00 0.00 1.82
257 258 9.905713 AAATAAACATTAGCCTAGACTCAATGA 57.094 29.630 12.01 0.00 32.29 2.57
258 259 9.905713 AATAAACATTAGCCTAGACTCAATGAA 57.094 29.630 12.01 0.00 32.29 2.57
259 260 9.905713 ATAAACATTAGCCTAGACTCAATGAAA 57.094 29.630 12.01 0.00 32.29 2.69
260 261 8.635765 AAACATTAGCCTAGACTCAATGAAAA 57.364 30.769 12.01 0.00 32.29 2.29
261 262 8.635765 AACATTAGCCTAGACTCAATGAAAAA 57.364 30.769 12.01 0.00 32.29 1.94
289 290 9.699410 AAATCCTATGATGTGAATTAAAGGACA 57.301 29.630 0.00 0.00 34.86 4.02
290 291 9.872684 AATCCTATGATGTGAATTAAAGGACAT 57.127 29.630 0.00 0.00 34.86 3.06
291 292 8.908786 TCCTATGATGTGAATTAAAGGACATC 57.091 34.615 13.36 13.36 43.31 3.06
292 293 8.717717 TCCTATGATGTGAATTAAAGGACATCT 58.282 33.333 17.89 10.49 43.38 2.90
293 294 8.997323 CCTATGATGTGAATTAAAGGACATCTC 58.003 37.037 17.89 3.38 43.38 2.75
294 295 9.775854 CTATGATGTGAATTAAAGGACATCTCT 57.224 33.333 17.89 11.53 43.38 3.10
296 297 8.868522 TGATGTGAATTAAAGGACATCTCTTT 57.131 30.769 17.89 0.00 43.38 2.52
297 298 9.300681 TGATGTGAATTAAAGGACATCTCTTTT 57.699 29.630 17.89 0.00 43.38 2.27
298 299 9.780413 GATGTGAATTAAAGGACATCTCTTTTC 57.220 33.333 13.12 0.00 40.95 2.29
299 300 8.110860 TGTGAATTAAAGGACATCTCTTTTCC 57.889 34.615 0.00 0.00 36.12 3.13
300 301 7.944554 TGTGAATTAAAGGACATCTCTTTTCCT 59.055 33.333 0.00 0.00 41.84 3.36
301 302 9.449719 GTGAATTAAAGGACATCTCTTTTCCTA 57.550 33.333 0.00 0.00 38.93 2.94
305 306 8.718102 TTAAAGGACATCTCTTTTCCTATTCG 57.282 34.615 0.00 0.00 38.93 3.34
306 307 4.698575 AGGACATCTCTTTTCCTATTCGC 58.301 43.478 0.00 0.00 38.03 4.70
307 308 4.162320 AGGACATCTCTTTTCCTATTCGCA 59.838 41.667 0.00 0.00 38.03 5.10
308 309 4.271291 GGACATCTCTTTTCCTATTCGCAC 59.729 45.833 0.00 0.00 0.00 5.34
309 310 5.091261 ACATCTCTTTTCCTATTCGCACT 57.909 39.130 0.00 0.00 0.00 4.40
310 311 5.112686 ACATCTCTTTTCCTATTCGCACTC 58.887 41.667 0.00 0.00 0.00 3.51
311 312 4.801330 TCTCTTTTCCTATTCGCACTCA 57.199 40.909 0.00 0.00 0.00 3.41
312 313 5.344743 TCTCTTTTCCTATTCGCACTCAT 57.655 39.130 0.00 0.00 0.00 2.90
313 314 6.465439 TCTCTTTTCCTATTCGCACTCATA 57.535 37.500 0.00 0.00 0.00 2.15
314 315 6.507900 TCTCTTTTCCTATTCGCACTCATAG 58.492 40.000 0.00 0.00 0.00 2.23
315 316 5.050490 TCTTTTCCTATTCGCACTCATAGC 58.950 41.667 0.00 0.00 0.00 2.97
316 317 4.400529 TTTCCTATTCGCACTCATAGCA 57.599 40.909 0.00 0.00 0.00 3.49
317 318 4.607293 TTCCTATTCGCACTCATAGCAT 57.393 40.909 0.00 0.00 0.00 3.79
318 319 4.607293 TCCTATTCGCACTCATAGCATT 57.393 40.909 0.00 0.00 0.00 3.56
319 320 4.960938 TCCTATTCGCACTCATAGCATTT 58.039 39.130 0.00 0.00 0.00 2.32
320 321 4.751600 TCCTATTCGCACTCATAGCATTTG 59.248 41.667 0.00 0.00 0.00 2.32
321 322 4.751600 CCTATTCGCACTCATAGCATTTGA 59.248 41.667 0.00 0.00 0.00 2.69
322 323 4.808077 ATTCGCACTCATAGCATTTGAG 57.192 40.909 8.50 8.50 44.95 3.02
323 324 3.525268 TCGCACTCATAGCATTTGAGA 57.475 42.857 15.00 0.00 42.63 3.27
324 325 4.063998 TCGCACTCATAGCATTTGAGAT 57.936 40.909 15.00 0.71 42.63 2.75
325 326 3.805971 TCGCACTCATAGCATTTGAGATG 59.194 43.478 15.00 10.91 42.63 2.90
326 327 3.606384 CGCACTCATAGCATTTGAGATGC 60.606 47.826 15.00 16.58 42.63 3.91
327 328 3.314357 GCACTCATAGCATTTGAGATGCA 59.686 43.478 10.70 0.00 46.77 3.96
328 329 4.023107 GCACTCATAGCATTTGAGATGCAT 60.023 41.667 10.70 0.00 46.77 3.96
329 330 5.452777 CACTCATAGCATTTGAGATGCATG 58.547 41.667 2.46 11.11 46.77 4.06
330 331 4.519350 ACTCATAGCATTTGAGATGCATGG 59.481 41.667 2.46 8.27 46.77 3.66
331 332 3.254903 TCATAGCATTTGAGATGCATGGC 59.745 43.478 2.46 0.00 46.77 4.40
332 333 1.480789 AGCATTTGAGATGCATGGCA 58.519 45.000 2.46 0.00 46.77 4.92
344 345 1.406180 TGCATGGCATCTCATTTTCCG 59.594 47.619 0.00 0.00 31.71 4.30
345 346 1.406539 GCATGGCATCTCATTTTCCGT 59.593 47.619 0.00 0.00 0.00 4.69
346 347 2.797087 GCATGGCATCTCATTTTCCGTG 60.797 50.000 0.00 0.00 37.00 4.94
347 348 2.488204 TGGCATCTCATTTTCCGTGA 57.512 45.000 0.00 0.00 0.00 4.35
348 349 2.083774 TGGCATCTCATTTTCCGTGAC 58.916 47.619 0.00 0.00 0.00 3.67
349 350 2.290260 TGGCATCTCATTTTCCGTGACT 60.290 45.455 0.00 0.00 0.00 3.41
350 351 2.352960 GGCATCTCATTTTCCGTGACTC 59.647 50.000 0.00 0.00 0.00 3.36
351 352 3.265791 GCATCTCATTTTCCGTGACTCT 58.734 45.455 0.00 0.00 0.00 3.24
352 353 3.308323 GCATCTCATTTTCCGTGACTCTC 59.692 47.826 0.00 0.00 0.00 3.20
353 354 3.594603 TCTCATTTTCCGTGACTCTCC 57.405 47.619 0.00 0.00 0.00 3.71
354 355 3.165875 TCTCATTTTCCGTGACTCTCCT 58.834 45.455 0.00 0.00 0.00 3.69
355 356 4.341487 TCTCATTTTCCGTGACTCTCCTA 58.659 43.478 0.00 0.00 0.00 2.94
356 357 4.956700 TCTCATTTTCCGTGACTCTCCTAT 59.043 41.667 0.00 0.00 0.00 2.57
357 358 5.422331 TCTCATTTTCCGTGACTCTCCTATT 59.578 40.000 0.00 0.00 0.00 1.73
358 359 5.661458 TCATTTTCCGTGACTCTCCTATTC 58.339 41.667 0.00 0.00 0.00 1.75
359 360 5.422331 TCATTTTCCGTGACTCTCCTATTCT 59.578 40.000 0.00 0.00 0.00 2.40
360 361 5.740290 TTTTCCGTGACTCTCCTATTCTT 57.260 39.130 0.00 0.00 0.00 2.52
361 362 6.845758 TTTTCCGTGACTCTCCTATTCTTA 57.154 37.500 0.00 0.00 0.00 2.10
362 363 6.452494 TTTCCGTGACTCTCCTATTCTTAG 57.548 41.667 0.00 0.00 0.00 2.18
363 364 4.462133 TCCGTGACTCTCCTATTCTTAGG 58.538 47.826 0.00 0.00 45.68 2.69
383 384 4.639135 GGATTTTCCTATGCTGTGAACC 57.361 45.455 0.00 0.00 32.53 3.62
384 385 4.016444 GGATTTTCCTATGCTGTGAACCA 58.984 43.478 0.00 0.00 32.53 3.67
385 386 4.462483 GGATTTTCCTATGCTGTGAACCAA 59.538 41.667 0.00 0.00 32.53 3.67
386 387 5.047377 GGATTTTCCTATGCTGTGAACCAAA 60.047 40.000 0.00 0.00 32.53 3.28
387 388 5.452078 TTTTCCTATGCTGTGAACCAAAG 57.548 39.130 0.00 0.00 0.00 2.77
388 389 4.365514 TTCCTATGCTGTGAACCAAAGA 57.634 40.909 0.00 0.00 0.00 2.52
389 390 4.365514 TCCTATGCTGTGAACCAAAGAA 57.634 40.909 0.00 0.00 0.00 2.52
390 391 4.326826 TCCTATGCTGTGAACCAAAGAAG 58.673 43.478 0.00 0.00 0.00 2.85
391 392 3.441572 CCTATGCTGTGAACCAAAGAAGG 59.558 47.826 0.00 0.00 0.00 3.46
392 393 1.032014 TGCTGTGAACCAAAGAAGGC 58.968 50.000 0.00 0.00 0.00 4.35
393 394 0.315251 GCTGTGAACCAAAGAAGGCC 59.685 55.000 0.00 0.00 0.00 5.19
394 395 1.986882 CTGTGAACCAAAGAAGGCCT 58.013 50.000 0.00 0.00 0.00 5.19
395 396 2.814097 GCTGTGAACCAAAGAAGGCCTA 60.814 50.000 5.16 0.00 0.00 3.93
396 397 3.690460 CTGTGAACCAAAGAAGGCCTAT 58.310 45.455 5.16 0.00 0.00 2.57
397 398 4.843728 CTGTGAACCAAAGAAGGCCTATA 58.156 43.478 5.16 0.00 0.00 1.31
398 399 5.440610 CTGTGAACCAAAGAAGGCCTATAT 58.559 41.667 5.16 0.00 0.00 0.86
399 400 6.569127 TGTGAACCAAAGAAGGCCTATATA 57.431 37.500 5.16 0.00 0.00 0.86
400 401 7.149202 TGTGAACCAAAGAAGGCCTATATAT 57.851 36.000 5.16 0.00 0.00 0.86
401 402 7.224297 TGTGAACCAAAGAAGGCCTATATATC 58.776 38.462 5.16 0.00 0.00 1.63
402 403 7.072454 TGTGAACCAAAGAAGGCCTATATATCT 59.928 37.037 5.16 0.61 0.00 1.98
403 404 7.939588 GTGAACCAAAGAAGGCCTATATATCTT 59.060 37.037 5.16 8.47 31.98 2.40
404 405 8.502738 TGAACCAAAGAAGGCCTATATATCTTT 58.497 33.333 19.38 19.38 40.06 2.52
407 408 9.794719 ACCAAAGAAGGCCTATATATCTTTAAC 57.205 33.333 22.92 0.00 38.04 2.01
408 409 9.793259 CCAAAGAAGGCCTATATATCTTTAACA 57.207 33.333 22.92 0.00 38.04 2.41
416 417 9.088512 GGCCTATATATCTTTAACATCTTCACG 57.911 37.037 0.00 0.00 0.00 4.35
417 418 8.596380 GCCTATATATCTTTAACATCTTCACGC 58.404 37.037 0.00 0.00 0.00 5.34
418 419 9.639601 CCTATATATCTTTAACATCTTCACGCA 57.360 33.333 0.00 0.00 0.00 5.24
422 423 6.851222 ATCTTTAACATCTTCACGCATAGG 57.149 37.500 0.00 0.00 0.00 2.57
423 424 5.972935 TCTTTAACATCTTCACGCATAGGA 58.027 37.500 0.00 0.00 0.00 2.94
424 425 6.582636 TCTTTAACATCTTCACGCATAGGAT 58.417 36.000 0.00 0.00 0.00 3.24
425 426 7.047891 TCTTTAACATCTTCACGCATAGGATT 58.952 34.615 0.00 0.00 0.00 3.01
426 427 8.201464 TCTTTAACATCTTCACGCATAGGATTA 58.799 33.333 0.00 0.00 0.00 1.75
427 428 7.946655 TTAACATCTTCACGCATAGGATTAG 57.053 36.000 0.00 0.00 0.00 1.73
428 429 4.887748 ACATCTTCACGCATAGGATTAGG 58.112 43.478 0.00 0.00 0.00 2.69
429 430 4.248859 CATCTTCACGCATAGGATTAGGG 58.751 47.826 0.00 0.00 0.00 3.53
430 431 2.037251 TCTTCACGCATAGGATTAGGGC 59.963 50.000 0.00 0.00 0.00 5.19
431 432 1.419381 TCACGCATAGGATTAGGGCA 58.581 50.000 0.00 0.00 0.00 5.36
432 433 1.765904 TCACGCATAGGATTAGGGCAA 59.234 47.619 0.00 0.00 0.00 4.52
433 434 1.873591 CACGCATAGGATTAGGGCAAC 59.126 52.381 0.00 0.00 0.00 4.17
434 435 1.768870 ACGCATAGGATTAGGGCAACT 59.231 47.619 0.00 0.00 0.00 3.16
435 436 2.224305 ACGCATAGGATTAGGGCAACTC 60.224 50.000 0.00 0.00 0.00 3.01
436 437 2.037772 CGCATAGGATTAGGGCAACTCT 59.962 50.000 0.00 0.00 0.00 3.24
437 438 3.495100 CGCATAGGATTAGGGCAACTCTT 60.495 47.826 0.00 0.00 0.00 2.85
438 439 3.817647 GCATAGGATTAGGGCAACTCTTG 59.182 47.826 0.00 0.00 0.00 3.02
463 464 8.826710 TGCTTCAAAATATAGAACATTAGTCGG 58.173 33.333 0.00 0.00 0.00 4.79
464 465 8.827677 GCTTCAAAATATAGAACATTAGTCGGT 58.172 33.333 0.00 0.00 0.00 4.69
466 467 9.661563 TTCAAAATATAGAACATTAGTCGGTGT 57.338 29.630 0.00 0.00 0.00 4.16
467 468 9.661563 TCAAAATATAGAACATTAGTCGGTGTT 57.338 29.630 0.00 0.00 40.97 3.32
472 473 5.796350 AGAACATTAGTCGGTGTTTATGC 57.204 39.130 0.00 0.00 38.57 3.14
473 474 4.328983 AGAACATTAGTCGGTGTTTATGCG 59.671 41.667 0.00 0.00 38.57 4.73
474 475 3.592059 ACATTAGTCGGTGTTTATGCGT 58.408 40.909 0.00 0.00 0.00 5.24
475 476 3.998341 ACATTAGTCGGTGTTTATGCGTT 59.002 39.130 0.00 0.00 0.00 4.84
476 477 4.142988 ACATTAGTCGGTGTTTATGCGTTG 60.143 41.667 0.00 0.00 0.00 4.10
477 478 1.873698 AGTCGGTGTTTATGCGTTGT 58.126 45.000 0.00 0.00 0.00 3.32
478 479 2.215196 AGTCGGTGTTTATGCGTTGTT 58.785 42.857 0.00 0.00 0.00 2.83
479 480 2.614983 AGTCGGTGTTTATGCGTTGTTT 59.385 40.909 0.00 0.00 0.00 2.83
480 481 2.717011 GTCGGTGTTTATGCGTTGTTTG 59.283 45.455 0.00 0.00 0.00 2.93
481 482 2.047769 CGGTGTTTATGCGTTGTTTGG 58.952 47.619 0.00 0.00 0.00 3.28
482 483 2.287069 CGGTGTTTATGCGTTGTTTGGA 60.287 45.455 0.00 0.00 0.00 3.53
483 484 3.707793 GGTGTTTATGCGTTGTTTGGAA 58.292 40.909 0.00 0.00 0.00 3.53
484 485 3.487942 GGTGTTTATGCGTTGTTTGGAAC 59.512 43.478 0.00 0.00 0.00 3.62
485 486 3.487942 GTGTTTATGCGTTGTTTGGAACC 59.512 43.478 0.00 0.00 0.00 3.62
486 487 3.381908 TGTTTATGCGTTGTTTGGAACCT 59.618 39.130 0.00 0.00 0.00 3.50
487 488 3.634568 TTATGCGTTGTTTGGAACCTG 57.365 42.857 0.00 0.00 0.00 4.00
488 489 1.398692 ATGCGTTGTTTGGAACCTGT 58.601 45.000 0.00 0.00 0.00 4.00
489 490 1.178276 TGCGTTGTTTGGAACCTGTT 58.822 45.000 0.00 0.00 0.00 3.16
490 491 2.366533 TGCGTTGTTTGGAACCTGTTA 58.633 42.857 0.00 0.00 0.00 2.41
491 492 2.097791 TGCGTTGTTTGGAACCTGTTAC 59.902 45.455 0.00 0.00 0.00 2.50
492 493 2.097791 GCGTTGTTTGGAACCTGTTACA 59.902 45.455 0.00 0.00 0.00 2.41
493 494 3.427773 GCGTTGTTTGGAACCTGTTACAA 60.428 43.478 3.56 3.56 41.32 2.41
506 507 4.254492 CCTGTTACAAAGACTAAGAGCCC 58.746 47.826 0.00 0.00 0.00 5.19
557 558 0.307760 CGTCGCCTTGAAAACAAGCT 59.692 50.000 0.00 0.00 0.00 3.74
564 565 3.254166 GCCTTGAAAACAAGCTGAGATGA 59.746 43.478 0.00 0.00 0.00 2.92
567 568 5.862323 CCTTGAAAACAAGCTGAGATGATTG 59.138 40.000 0.00 0.00 39.02 2.67
594 595 8.773033 ACTATTGATTTTAGGAGGCATGAAAT 57.227 30.769 0.00 0.00 0.00 2.17
601 602 5.645056 TTAGGAGGCATGAAATACCATGA 57.355 39.130 7.94 0.00 44.98 3.07
603 604 3.718434 AGGAGGCATGAAATACCATGAGA 59.282 43.478 7.94 0.00 44.98 3.27
604 605 4.353191 AGGAGGCATGAAATACCATGAGAT 59.647 41.667 7.94 0.00 44.98 2.75
631 632 3.401342 ACAAGAAAAGGTAGGGTGGGATT 59.599 43.478 0.00 0.00 0.00 3.01
664 665 3.254903 GGCGGATACACTGAAAAGGTTTT 59.745 43.478 0.00 0.00 0.00 2.43
676 677 7.061094 CACTGAAAAGGTTTTAATTCATCGAGC 59.939 37.037 0.00 0.00 31.92 5.03
701 702 7.706607 GCTAGTTTTCCTTTGAACAAAACTGAT 59.293 33.333 15.84 0.00 45.55 2.90
702 703 9.586435 CTAGTTTTCCTTTGAACAAAACTGATT 57.414 29.630 15.84 0.00 45.55 2.57
854 1019 2.843701 ACAGAGCAAGAACAACTCCTG 58.156 47.619 0.00 0.00 0.00 3.86
886 1051 0.108585 TTGAAGCCCAGTCCAGTGTC 59.891 55.000 0.00 0.00 0.00 3.67
891 1056 2.203998 CCAGTCCAGTGTCCCCCT 60.204 66.667 0.00 0.00 0.00 4.79
892 1057 1.080354 CCAGTCCAGTGTCCCCCTA 59.920 63.158 0.00 0.00 0.00 3.53
893 1058 0.546747 CCAGTCCAGTGTCCCCCTAA 60.547 60.000 0.00 0.00 0.00 2.69
894 1059 0.613777 CAGTCCAGTGTCCCCCTAAC 59.386 60.000 0.00 0.00 0.00 2.34
895 1060 0.546988 AGTCCAGTGTCCCCCTAACC 60.547 60.000 0.00 0.00 0.00 2.85
896 1061 1.229723 TCCAGTGTCCCCCTAACCC 60.230 63.158 0.00 0.00 0.00 4.11
897 1062 1.229853 CCAGTGTCCCCCTAACCCT 60.230 63.158 0.00 0.00 0.00 4.34
923 1088 1.740296 CCTAACCCACACGCTTCCG 60.740 63.158 0.00 0.00 41.14 4.30
971 1136 4.308458 CCGGCACCGTCTTGGACA 62.308 66.667 8.49 0.00 42.00 4.02
991 1156 1.951130 CAGATCGAATCCACGGCGG 60.951 63.158 13.24 0.00 0.00 6.13
1350 1515 2.395690 GCGCCGACGATCAAACTG 59.604 61.111 0.00 0.00 43.93 3.16
1493 1658 1.116308 TCTGTGGACTTCGTGTTGGA 58.884 50.000 0.00 0.00 0.00 3.53
1556 1721 0.108424 GTGACGAAGCAGCTCATCCT 60.108 55.000 0.00 0.00 0.00 3.24
1776 1941 2.356535 CCTCAAGCTGCCCTACAAGAAT 60.357 50.000 0.00 0.00 0.00 2.40
1779 1944 3.084039 CAAGCTGCCCTACAAGAATGAA 58.916 45.455 0.00 0.00 0.00 2.57
1828 1996 0.261991 TATCCTTCTCCCGGACAGCT 59.738 55.000 0.73 0.00 32.41 4.24
1846 2014 1.745232 CTACACTCTCAGTCTCGCCT 58.255 55.000 0.00 0.00 0.00 5.52
1865 2033 0.666913 TATCTCTACGACAAGGCGGC 59.333 55.000 0.00 0.00 35.12 6.53
2038 2207 2.034532 CAGGCATGGTGAGTGGCA 59.965 61.111 0.00 0.00 43.86 4.92
2039 2208 1.379443 CAGGCATGGTGAGTGGCAT 60.379 57.895 0.00 0.00 43.86 4.40
2154 2332 1.615384 GGGACTACTAGTGTGGGTCGT 60.615 57.143 5.39 0.00 33.98 4.34
2155 2333 2.165998 GGACTACTAGTGTGGGTCGTT 58.834 52.381 5.39 0.00 33.98 3.85
2304 2502 7.676043 TCCATAAAATGTGGAATCCTTTGGTTA 59.324 33.333 0.00 0.00 42.56 2.85
2459 2658 1.948403 TTCATGCCCAGGAATCCCCC 61.948 60.000 0.00 0.00 34.66 5.40
2462 2661 3.416880 GCCCAGGAATCCCCCGAA 61.417 66.667 0.00 0.00 34.66 4.30
2494 2693 3.895041 CCTGGGGTACAACAATTGTTTCT 59.105 43.478 21.10 11.61 42.22 2.52
2496 2695 5.183140 CCTGGGGTACAACAATTGTTTCTAG 59.817 44.000 21.10 12.32 42.22 2.43
2547 3147 2.104967 AGATGTCCCCATGTGCAATTG 58.895 47.619 0.00 0.00 0.00 2.32
2572 3172 0.395586 TTGTGGAGTTGCTGTTGGCT 60.396 50.000 0.00 0.00 42.39 4.75
2577 3177 1.470098 GGAGTTGCTGTTGGCTACATG 59.530 52.381 1.49 0.00 46.25 3.21
2590 3190 3.691118 TGGCTACATGTTTCTGCTCATTC 59.309 43.478 2.30 0.00 0.00 2.67
2592 3192 3.691118 GCTACATGTTTCTGCTCATTCCA 59.309 43.478 2.30 0.00 0.00 3.53
2596 3196 3.490439 TGTTTCTGCTCATTCCACTGA 57.510 42.857 0.00 0.00 0.00 3.41
2633 3247 5.191722 AGCTAGATTTTCAGGTGGATGGTAA 59.808 40.000 0.00 0.00 0.00 2.85
2644 3258 3.537580 GTGGATGGTAAGTTGCGGATAA 58.462 45.455 0.00 0.00 0.00 1.75
2647 3261 3.942748 GGATGGTAAGTTGCGGATAACAA 59.057 43.478 0.00 0.00 33.02 2.83
2657 3271 6.604735 GTTGCGGATAACAACATCTATTCT 57.395 37.500 1.95 0.00 45.35 2.40
2662 3276 6.423905 GCGGATAACAACATCTATTCTAAGCA 59.576 38.462 0.00 0.00 0.00 3.91
2663 3277 7.569591 GCGGATAACAACATCTATTCTAAGCAC 60.570 40.741 0.00 0.00 0.00 4.40
2685 3299 6.131972 ACATATATGTGATGGAAAGGGAGG 57.868 41.667 17.60 0.00 40.03 4.30
2690 3304 0.925720 TGATGGAAAGGGAGGGGCAT 60.926 55.000 0.00 0.00 0.00 4.40
2692 3306 1.713078 GATGGAAAGGGAGGGGCATAT 59.287 52.381 0.00 0.00 0.00 1.78
2699 3313 0.541863 GGGAGGGGCATATACGGATG 59.458 60.000 0.00 0.00 0.00 3.51
2708 3322 3.002791 GCATATACGGATGGTCATGTGG 58.997 50.000 0.00 0.00 0.00 4.17
2709 3323 3.599343 CATATACGGATGGTCATGTGGG 58.401 50.000 0.00 0.00 0.00 4.61
2716 3330 2.025887 GGATGGTCATGTGGGTCTTCTT 60.026 50.000 0.00 0.00 0.00 2.52
2720 3334 3.117701 TGGTCATGTGGGTCTTCTTTGAA 60.118 43.478 0.00 0.00 0.00 2.69
2724 3338 5.010012 GTCATGTGGGTCTTCTTTGAAATGT 59.990 40.000 0.00 0.00 0.00 2.71
2754 3369 2.970974 GCAAGCCAGACACTTCGGC 61.971 63.158 0.00 0.00 40.00 5.54
2768 3383 3.016736 ACTTCGGCATACAATTCCCTTG 58.983 45.455 0.00 0.00 40.90 3.61
2770 3385 3.080300 TCGGCATACAATTCCCTTGTT 57.920 42.857 0.00 0.00 45.98 2.83
2773 3388 2.418609 GGCATACAATTCCCTTGTTGGC 60.419 50.000 0.00 4.19 45.98 4.52
2787 3402 0.171903 GTTGGCGCTCATCTGCATTT 59.828 50.000 7.64 0.00 0.00 2.32
2793 3408 2.554142 CGCTCATCTGCATTTACTGGA 58.446 47.619 0.00 0.00 0.00 3.86
2816 3434 4.953579 ACAAGAGTAAGGCTTTGGTGAAAA 59.046 37.500 4.45 0.00 0.00 2.29
2821 3439 4.822350 AGTAAGGCTTTGGTGAAAACTCTC 59.178 41.667 4.45 0.00 0.00 3.20
2824 3442 1.947456 GCTTTGGTGAAAACTCTCGGT 59.053 47.619 0.00 0.00 0.00 4.69
2833 3451 6.319152 TGGTGAAAACTCTCGGTTATTTTGAA 59.681 34.615 0.00 0.00 37.12 2.69
2837 3455 7.918562 TGAAAACTCTCGGTTATTTTGAAAAGG 59.081 33.333 0.00 0.00 37.12 3.11
2849 3467 0.968405 TGAAAAGGTGAAGGGCATGC 59.032 50.000 9.90 9.90 0.00 4.06
2854 3472 1.001641 GGTGAAGGGCATGCAGACT 60.002 57.895 21.36 11.47 0.00 3.24
2903 3521 2.633488 GTACAACATCCTCTTGAGGGC 58.367 52.381 15.81 0.00 0.00 5.19
2936 3554 0.393077 AGAGACACGAAACAGGTGGG 59.607 55.000 0.00 0.00 39.69 4.61
2945 3563 1.546029 GAAACAGGTGGGCATCCTTTC 59.454 52.381 0.00 0.00 32.37 2.62
2974 3597 2.323968 GGATGAAAGCCAGTCTCTCC 57.676 55.000 0.00 0.00 46.15 3.71
2976 3599 2.172293 GGATGAAAGCCAGTCTCTCCAT 59.828 50.000 0.00 0.00 46.15 3.41
3019 3643 4.594920 AGTGATTGACGGATATGGGAAGAT 59.405 41.667 0.00 0.00 0.00 2.40
3047 3735 3.119173 TGATCAAACGGATGGAATTTGGC 60.119 43.478 0.00 0.00 36.00 4.52
3053 3741 1.133976 CGGATGGAATTTGGCTCCTCT 60.134 52.381 0.00 0.00 33.77 3.69
3069 3757 2.026262 TCCTCTGTCAATAAACCCAGGC 60.026 50.000 0.00 0.00 0.00 4.85
3082 3770 2.328099 CCAGGCGAGTGCAAACCTC 61.328 63.158 0.00 0.00 45.35 3.85
3112 3800 6.262944 TCTGCAAGAGAGTCATCTAGAGATTC 59.737 42.308 0.00 3.03 38.67 2.52
3186 3874 2.743718 CAGTTGGTGCCTCCGAGT 59.256 61.111 0.00 0.00 39.52 4.18
3191 3879 2.039879 AGTTGGTGCCTCCGAGTAAAAT 59.960 45.455 0.00 0.00 39.52 1.82
3234 4012 2.215196 ACTTTGCAAGCAAGCCAAATG 58.785 42.857 7.60 0.00 37.24 2.32
3258 4036 0.532115 GCAATTCAGAAACGGGCCAT 59.468 50.000 4.39 0.00 0.00 4.40
3259 4037 1.736696 GCAATTCAGAAACGGGCCATG 60.737 52.381 4.39 0.00 0.00 3.66
3260 4038 1.545582 CAATTCAGAAACGGGCCATGT 59.454 47.619 4.39 0.00 0.00 3.21
3262 4040 0.109532 TTCAGAAACGGGCCATGTCA 59.890 50.000 4.39 0.00 0.00 3.58
3263 4041 0.109532 TCAGAAACGGGCCATGTCAA 59.890 50.000 4.39 0.00 0.00 3.18
3265 4043 0.110486 AGAAACGGGCCATGTCAAGT 59.890 50.000 4.39 0.00 0.00 3.16
3266 4044 0.958822 GAAACGGGCCATGTCAAGTT 59.041 50.000 4.39 0.00 0.00 2.66
3267 4045 2.156098 GAAACGGGCCATGTCAAGTTA 58.844 47.619 4.39 0.00 0.00 2.24
3268 4046 2.507407 AACGGGCCATGTCAAGTTAT 57.493 45.000 4.39 0.00 0.00 1.89
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 2.224917 ACGGGGCCTTCAAATACTTGAA 60.225 45.455 0.84 0.00 46.88 2.69
7 8 1.353022 ACGGGGCCTTCAAATACTTGA 59.647 47.619 0.84 0.00 39.87 3.02
8 9 1.834188 ACGGGGCCTTCAAATACTTG 58.166 50.000 0.84 0.00 0.00 3.16
9 10 2.224917 TGAACGGGGCCTTCAAATACTT 60.225 45.455 0.84 0.00 0.00 2.24
10 11 1.353022 TGAACGGGGCCTTCAAATACT 59.647 47.619 0.84 0.00 0.00 2.12
11 12 1.828979 TGAACGGGGCCTTCAAATAC 58.171 50.000 0.84 0.00 0.00 1.89
12 13 2.818751 ATGAACGGGGCCTTCAAATA 57.181 45.000 11.71 0.00 31.48 1.40
13 14 2.241176 TCTATGAACGGGGCCTTCAAAT 59.759 45.455 11.71 0.48 31.48 2.32
14 15 1.631388 TCTATGAACGGGGCCTTCAAA 59.369 47.619 11.71 0.00 31.48 2.69
15 16 1.281419 TCTATGAACGGGGCCTTCAA 58.719 50.000 11.71 2.45 31.48 2.69
16 17 1.209504 CTTCTATGAACGGGGCCTTCA 59.790 52.381 10.28 10.28 32.24 3.02
17 18 1.954927 CTTCTATGAACGGGGCCTTC 58.045 55.000 0.84 0.15 0.00 3.46
18 19 0.107165 GCTTCTATGAACGGGGCCTT 60.107 55.000 0.84 0.00 0.00 4.35
19 20 1.271840 TGCTTCTATGAACGGGGCCT 61.272 55.000 0.84 0.00 0.00 5.19
20 21 0.179018 ATGCTTCTATGAACGGGGCC 60.179 55.000 0.00 0.00 0.00 5.80
21 22 1.230324 GATGCTTCTATGAACGGGGC 58.770 55.000 0.00 0.00 0.00 5.80
22 23 2.620251 TGATGCTTCTATGAACGGGG 57.380 50.000 0.88 0.00 0.00 5.73
23 24 3.879295 ACATTGATGCTTCTATGAACGGG 59.121 43.478 23.87 3.98 37.30 5.28
24 25 5.490139 AACATTGATGCTTCTATGAACGG 57.510 39.130 23.87 4.55 37.30 4.44
25 26 7.468922 TCTAACATTGATGCTTCTATGAACG 57.531 36.000 23.87 13.81 37.30 3.95
26 27 8.341173 CCTTCTAACATTGATGCTTCTATGAAC 58.659 37.037 23.87 0.00 37.30 3.18
27 28 7.012704 GCCTTCTAACATTGATGCTTCTATGAA 59.987 37.037 23.87 13.65 37.30 2.57
28 29 6.484643 GCCTTCTAACATTGATGCTTCTATGA 59.515 38.462 23.87 7.73 37.30 2.15
29 30 6.261603 TGCCTTCTAACATTGATGCTTCTATG 59.738 38.462 18.10 18.10 39.88 2.23
30 31 6.359804 TGCCTTCTAACATTGATGCTTCTAT 58.640 36.000 0.88 0.00 0.00 1.98
31 32 5.744171 TGCCTTCTAACATTGATGCTTCTA 58.256 37.500 0.88 0.00 0.00 2.10
32 33 4.592942 TGCCTTCTAACATTGATGCTTCT 58.407 39.130 0.88 0.00 0.00 2.85
33 34 4.970662 TGCCTTCTAACATTGATGCTTC 57.029 40.909 0.00 0.00 0.00 3.86
34 35 4.441079 GCATGCCTTCTAACATTGATGCTT 60.441 41.667 6.36 0.00 33.69 3.91
35 36 3.067742 GCATGCCTTCTAACATTGATGCT 59.932 43.478 6.36 0.00 33.69 3.79
36 37 3.378339 GCATGCCTTCTAACATTGATGC 58.622 45.455 6.36 0.00 0.00 3.91
37 38 3.635373 AGGCATGCCTTCTAACATTGATG 59.365 43.478 34.07 0.00 45.70 3.07
38 39 3.907221 AGGCATGCCTTCTAACATTGAT 58.093 40.909 34.07 6.97 45.70 2.57
39 40 3.370840 AGGCATGCCTTCTAACATTGA 57.629 42.857 34.07 0.00 45.70 2.57
40 41 3.567164 CCTAGGCATGCCTTCTAACATTG 59.433 47.826 42.49 17.48 45.70 2.82
41 42 3.203040 ACCTAGGCATGCCTTCTAACATT 59.797 43.478 42.49 19.07 45.70 2.71
42 43 2.780010 ACCTAGGCATGCCTTCTAACAT 59.220 45.455 42.49 19.83 45.70 2.71
43 44 2.196595 ACCTAGGCATGCCTTCTAACA 58.803 47.619 42.49 23.43 45.70 2.41
44 45 3.134081 TGTACCTAGGCATGCCTTCTAAC 59.866 47.826 42.49 31.46 45.70 2.34
45 46 3.380393 TGTACCTAGGCATGCCTTCTAA 58.620 45.455 42.49 24.58 45.70 2.10
46 47 3.040655 TGTACCTAGGCATGCCTTCTA 57.959 47.619 42.49 24.96 45.70 2.10
47 48 1.879575 TGTACCTAGGCATGCCTTCT 58.120 50.000 42.49 26.17 45.70 2.85
48 49 2.938956 ATGTACCTAGGCATGCCTTC 57.061 50.000 42.49 25.65 45.70 3.46
49 50 3.053693 TGAAATGTACCTAGGCATGCCTT 60.054 43.478 42.49 27.74 45.70 4.35
51 52 2.930950 TGAAATGTACCTAGGCATGCC 58.069 47.619 30.12 30.12 0.00 4.40
52 53 5.067674 TCAATTGAAATGTACCTAGGCATGC 59.932 40.000 9.90 9.90 0.00 4.06
53 54 6.543465 TCTCAATTGAAATGTACCTAGGCATG 59.457 38.462 9.30 0.00 0.00 4.06
54 55 6.662755 TCTCAATTGAAATGTACCTAGGCAT 58.337 36.000 9.30 1.92 0.00 4.40
55 56 6.061022 TCTCAATTGAAATGTACCTAGGCA 57.939 37.500 9.30 0.00 0.00 4.75
56 57 6.599638 AGTTCTCAATTGAAATGTACCTAGGC 59.400 38.462 9.30 0.00 0.00 3.93
57 58 8.567285 AAGTTCTCAATTGAAATGTACCTAGG 57.433 34.615 7.41 7.41 0.00 3.02
61 62 9.076596 GCATAAAGTTCTCAATTGAAATGTACC 57.923 33.333 9.88 0.00 0.00 3.34
62 63 9.076596 GGCATAAAGTTCTCAATTGAAATGTAC 57.923 33.333 9.88 2.55 0.00 2.90
63 64 9.023962 AGGCATAAAGTTCTCAATTGAAATGTA 57.976 29.630 9.88 0.00 0.00 2.29
64 65 7.899973 AGGCATAAAGTTCTCAATTGAAATGT 58.100 30.769 9.88 0.00 0.00 2.71
65 66 7.490402 GGAGGCATAAAGTTCTCAATTGAAATG 59.510 37.037 9.88 0.00 0.00 2.32
66 67 7.398332 AGGAGGCATAAAGTTCTCAATTGAAAT 59.602 33.333 9.88 0.00 0.00 2.17
67 68 6.721208 AGGAGGCATAAAGTTCTCAATTGAAA 59.279 34.615 9.88 4.50 0.00 2.69
68 69 6.248433 AGGAGGCATAAAGTTCTCAATTGAA 58.752 36.000 9.88 0.00 0.00 2.69
69 70 5.819991 AGGAGGCATAAAGTTCTCAATTGA 58.180 37.500 8.12 8.12 0.00 2.57
70 71 6.521151 AAGGAGGCATAAAGTTCTCAATTG 57.479 37.500 0.00 0.00 0.00 2.32
71 72 6.071165 CCAAAGGAGGCATAAAGTTCTCAATT 60.071 38.462 0.00 0.00 0.00 2.32
72 73 5.420104 CCAAAGGAGGCATAAAGTTCTCAAT 59.580 40.000 0.00 0.00 0.00 2.57
73 74 4.766891 CCAAAGGAGGCATAAAGTTCTCAA 59.233 41.667 0.00 0.00 0.00 3.02
74 75 4.202567 ACCAAAGGAGGCATAAAGTTCTCA 60.203 41.667 0.00 0.00 0.00 3.27
75 76 4.336280 ACCAAAGGAGGCATAAAGTTCTC 58.664 43.478 0.00 0.00 0.00 2.87
76 77 4.388577 ACCAAAGGAGGCATAAAGTTCT 57.611 40.909 0.00 0.00 0.00 3.01
77 78 5.010617 TCAAACCAAAGGAGGCATAAAGTTC 59.989 40.000 0.00 0.00 0.00 3.01
78 79 4.898861 TCAAACCAAAGGAGGCATAAAGTT 59.101 37.500 0.00 0.00 0.00 2.66
79 80 4.479158 TCAAACCAAAGGAGGCATAAAGT 58.521 39.130 0.00 0.00 0.00 2.66
80 81 5.467035 TTCAAACCAAAGGAGGCATAAAG 57.533 39.130 0.00 0.00 0.00 1.85
81 82 4.283212 CCTTCAAACCAAAGGAGGCATAAA 59.717 41.667 0.00 0.00 45.15 1.40
82 83 3.831911 CCTTCAAACCAAAGGAGGCATAA 59.168 43.478 0.00 0.00 45.15 1.90
83 84 3.075283 TCCTTCAAACCAAAGGAGGCATA 59.925 43.478 0.51 0.00 45.74 3.14
84 85 2.158325 TCCTTCAAACCAAAGGAGGCAT 60.158 45.455 0.51 0.00 45.74 4.40
85 86 1.216678 TCCTTCAAACCAAAGGAGGCA 59.783 47.619 0.51 0.00 45.74 4.75
86 87 1.995376 TCCTTCAAACCAAAGGAGGC 58.005 50.000 0.51 0.00 45.74 4.70
90 91 8.811994 TCCTATAAAATTCCTTCAAACCAAAGG 58.188 33.333 0.00 0.00 43.94 3.11
147 148 6.097696 CAGACCAAAGGGAAGTAAAGGAAAAA 59.902 38.462 0.00 0.00 38.05 1.94
148 149 5.596772 CAGACCAAAGGGAAGTAAAGGAAAA 59.403 40.000 0.00 0.00 38.05 2.29
149 150 5.137551 CAGACCAAAGGGAAGTAAAGGAAA 58.862 41.667 0.00 0.00 38.05 3.13
150 151 4.167307 ACAGACCAAAGGGAAGTAAAGGAA 59.833 41.667 0.00 0.00 38.05 3.36
151 152 3.720002 ACAGACCAAAGGGAAGTAAAGGA 59.280 43.478 0.00 0.00 38.05 3.36
152 153 4.100279 ACAGACCAAAGGGAAGTAAAGG 57.900 45.455 0.00 0.00 38.05 3.11
153 154 5.012768 TCCTACAGACCAAAGGGAAGTAAAG 59.987 44.000 0.00 0.00 38.05 1.85
154 155 4.909088 TCCTACAGACCAAAGGGAAGTAAA 59.091 41.667 0.00 0.00 38.05 2.01
155 156 4.495565 TCCTACAGACCAAAGGGAAGTAA 58.504 43.478 0.00 0.00 38.05 2.24
156 157 4.136341 TCCTACAGACCAAAGGGAAGTA 57.864 45.455 0.00 0.00 38.05 2.24
157 158 2.986050 TCCTACAGACCAAAGGGAAGT 58.014 47.619 0.00 0.00 38.05 3.01
158 159 4.576330 ATTCCTACAGACCAAAGGGAAG 57.424 45.455 0.00 0.00 36.49 3.46
159 160 5.347124 TCTATTCCTACAGACCAAAGGGAA 58.653 41.667 0.00 0.00 37.28 3.97
160 161 4.955335 TCTATTCCTACAGACCAAAGGGA 58.045 43.478 0.00 0.00 38.05 4.20
161 162 5.693769 TTCTATTCCTACAGACCAAAGGG 57.306 43.478 0.00 0.00 41.29 3.95
162 163 6.100424 AGGATTCTATTCCTACAGACCAAAGG 59.900 42.308 0.00 0.00 44.50 3.11
163 164 7.130681 AGGATTCTATTCCTACAGACCAAAG 57.869 40.000 0.00 0.00 44.50 2.77
200 201 6.986817 TGAAATGTCGAGGATAGGAAGAATTC 59.013 38.462 0.00 0.00 46.67 2.17
201 202 6.889198 TGAAATGTCGAGGATAGGAAGAATT 58.111 36.000 0.00 0.00 0.00 2.17
202 203 6.485830 TGAAATGTCGAGGATAGGAAGAAT 57.514 37.500 0.00 0.00 0.00 2.40
203 204 5.932619 TGAAATGTCGAGGATAGGAAGAA 57.067 39.130 0.00 0.00 0.00 2.52
204 205 6.778069 ACTATGAAATGTCGAGGATAGGAAGA 59.222 38.462 0.00 0.00 0.00 2.87
205 206 6.987386 ACTATGAAATGTCGAGGATAGGAAG 58.013 40.000 0.00 0.00 0.00 3.46
206 207 6.978674 ACTATGAAATGTCGAGGATAGGAA 57.021 37.500 0.00 0.00 0.00 3.36
207 208 8.473358 TTTACTATGAAATGTCGAGGATAGGA 57.527 34.615 0.00 0.00 0.00 2.94
208 209 9.712305 ATTTTACTATGAAATGTCGAGGATAGG 57.288 33.333 0.00 0.00 0.00 2.57
231 232 9.905713 TCATTGAGTCTAGGCTAATGTTTATTT 57.094 29.630 18.08 0.00 32.22 1.40
232 233 9.905713 TTCATTGAGTCTAGGCTAATGTTTATT 57.094 29.630 18.08 0.00 32.22 1.40
233 234 9.905713 TTTCATTGAGTCTAGGCTAATGTTTAT 57.094 29.630 18.08 0.00 32.22 1.40
234 235 9.733556 TTTTCATTGAGTCTAGGCTAATGTTTA 57.266 29.630 18.08 8.82 32.22 2.01
235 236 8.635765 TTTTCATTGAGTCTAGGCTAATGTTT 57.364 30.769 18.08 0.00 32.22 2.83
236 237 8.635765 TTTTTCATTGAGTCTAGGCTAATGTT 57.364 30.769 18.08 0.00 32.22 2.71
263 264 9.699410 TGTCCTTTAATTCACATCATAGGATTT 57.301 29.630 0.00 0.00 33.51 2.17
264 265 9.872684 ATGTCCTTTAATTCACATCATAGGATT 57.127 29.630 0.00 0.00 33.51 3.01
265 266 9.512588 GATGTCCTTTAATTCACATCATAGGAT 57.487 33.333 12.82 0.00 43.13 3.24
266 267 8.717717 AGATGTCCTTTAATTCACATCATAGGA 58.282 33.333 17.14 3.48 45.13 2.94
267 268 8.915057 AGATGTCCTTTAATTCACATCATAGG 57.085 34.615 17.14 1.51 45.13 2.57
268 269 9.775854 AGAGATGTCCTTTAATTCACATCATAG 57.224 33.333 17.14 0.00 45.13 2.23
270 271 9.471702 AAAGAGATGTCCTTTAATTCACATCAT 57.528 29.630 17.14 7.79 45.13 2.45
271 272 8.868522 AAAGAGATGTCCTTTAATTCACATCA 57.131 30.769 17.14 0.00 45.13 3.07
272 273 9.780413 GAAAAGAGATGTCCTTTAATTCACATC 57.220 33.333 10.90 10.90 43.70 3.06
273 274 8.743714 GGAAAAGAGATGTCCTTTAATTCACAT 58.256 33.333 0.00 0.00 33.85 3.21
274 275 7.944554 AGGAAAAGAGATGTCCTTTAATTCACA 59.055 33.333 0.00 0.00 38.71 3.58
275 276 8.341892 AGGAAAAGAGATGTCCTTTAATTCAC 57.658 34.615 0.00 0.00 38.71 3.18
279 280 9.331282 CGAATAGGAAAAGAGATGTCCTTTAAT 57.669 33.333 0.00 0.00 42.00 1.40
280 281 7.280205 GCGAATAGGAAAAGAGATGTCCTTTAA 59.720 37.037 0.00 0.00 42.00 1.52
281 282 6.761714 GCGAATAGGAAAAGAGATGTCCTTTA 59.238 38.462 0.00 0.00 42.00 1.85
282 283 5.586643 GCGAATAGGAAAAGAGATGTCCTTT 59.413 40.000 0.00 0.00 42.00 3.11
283 284 5.119694 GCGAATAGGAAAAGAGATGTCCTT 58.880 41.667 0.00 0.00 42.00 3.36
284 285 4.162320 TGCGAATAGGAAAAGAGATGTCCT 59.838 41.667 0.00 0.00 44.17 3.85
285 286 4.271291 GTGCGAATAGGAAAAGAGATGTCC 59.729 45.833 0.00 0.00 0.00 4.02
286 287 5.112686 AGTGCGAATAGGAAAAGAGATGTC 58.887 41.667 0.00 0.00 0.00 3.06
287 288 5.091261 AGTGCGAATAGGAAAAGAGATGT 57.909 39.130 0.00 0.00 0.00 3.06
288 289 5.111989 TGAGTGCGAATAGGAAAAGAGATG 58.888 41.667 0.00 0.00 0.00 2.90
289 290 5.344743 TGAGTGCGAATAGGAAAAGAGAT 57.655 39.130 0.00 0.00 0.00 2.75
290 291 4.801330 TGAGTGCGAATAGGAAAAGAGA 57.199 40.909 0.00 0.00 0.00 3.10
291 292 5.176590 GCTATGAGTGCGAATAGGAAAAGAG 59.823 44.000 0.00 0.00 0.00 2.85
292 293 5.050490 GCTATGAGTGCGAATAGGAAAAGA 58.950 41.667 0.00 0.00 0.00 2.52
293 294 4.811024 TGCTATGAGTGCGAATAGGAAAAG 59.189 41.667 0.00 0.00 0.00 2.27
294 295 4.765273 TGCTATGAGTGCGAATAGGAAAA 58.235 39.130 0.00 0.00 0.00 2.29
295 296 4.400529 TGCTATGAGTGCGAATAGGAAA 57.599 40.909 0.00 0.00 0.00 3.13
296 297 4.607293 ATGCTATGAGTGCGAATAGGAA 57.393 40.909 0.00 0.00 31.57 3.36
297 298 4.607293 AATGCTATGAGTGCGAATAGGA 57.393 40.909 0.00 0.00 32.23 2.94
298 299 4.751600 TCAAATGCTATGAGTGCGAATAGG 59.248 41.667 0.00 0.00 0.00 2.57
299 300 5.693555 TCTCAAATGCTATGAGTGCGAATAG 59.306 40.000 11.81 0.00 43.77 1.73
300 301 5.600696 TCTCAAATGCTATGAGTGCGAATA 58.399 37.500 11.81 0.00 43.77 1.75
301 302 4.445453 TCTCAAATGCTATGAGTGCGAAT 58.555 39.130 11.81 0.00 43.77 3.34
302 303 3.860641 TCTCAAATGCTATGAGTGCGAA 58.139 40.909 11.81 0.00 43.77 4.70
303 304 3.525268 TCTCAAATGCTATGAGTGCGA 57.475 42.857 11.81 0.00 43.77 5.10
304 305 3.606384 GCATCTCAAATGCTATGAGTGCG 60.606 47.826 16.67 8.92 43.77 5.34
305 306 3.314357 TGCATCTCAAATGCTATGAGTGC 59.686 43.478 20.44 20.44 43.77 4.40
306 307 5.452777 CATGCATCTCAAATGCTATGAGTG 58.547 41.667 10.96 10.61 43.77 3.51
307 308 4.519350 CCATGCATCTCAAATGCTATGAGT 59.481 41.667 16.73 0.92 43.77 3.41
308 309 4.616143 GCCATGCATCTCAAATGCTATGAG 60.616 45.833 16.73 7.41 44.79 2.90
309 310 3.254903 GCCATGCATCTCAAATGCTATGA 59.745 43.478 16.73 0.00 44.79 2.15
310 311 3.005367 TGCCATGCATCTCAAATGCTATG 59.995 43.478 10.96 11.49 44.79 2.23
311 312 3.227614 TGCCATGCATCTCAAATGCTAT 58.772 40.909 10.96 1.52 44.79 2.97
312 313 2.657143 TGCCATGCATCTCAAATGCTA 58.343 42.857 10.96 0.00 44.79 3.49
313 314 1.480789 TGCCATGCATCTCAAATGCT 58.519 45.000 10.96 0.00 44.79 3.79
324 325 1.406180 CGGAAAATGAGATGCCATGCA 59.594 47.619 0.00 0.00 44.86 3.96
325 326 1.406539 ACGGAAAATGAGATGCCATGC 59.593 47.619 0.00 0.00 0.00 4.06
326 327 2.684374 TCACGGAAAATGAGATGCCATG 59.316 45.455 0.00 0.00 0.00 3.66
327 328 2.684881 GTCACGGAAAATGAGATGCCAT 59.315 45.455 0.00 0.00 0.00 4.40
328 329 2.083774 GTCACGGAAAATGAGATGCCA 58.916 47.619 0.00 0.00 0.00 4.92
329 330 2.352960 GAGTCACGGAAAATGAGATGCC 59.647 50.000 0.00 0.00 0.00 4.40
330 331 3.265791 AGAGTCACGGAAAATGAGATGC 58.734 45.455 0.00 0.00 0.00 3.91
331 332 3.868077 GGAGAGTCACGGAAAATGAGATG 59.132 47.826 0.00 0.00 0.00 2.90
332 333 3.772025 AGGAGAGTCACGGAAAATGAGAT 59.228 43.478 0.00 0.00 0.00 2.75
333 334 3.165875 AGGAGAGTCACGGAAAATGAGA 58.834 45.455 0.00 0.00 0.00 3.27
334 335 3.601443 AGGAGAGTCACGGAAAATGAG 57.399 47.619 0.00 0.00 0.00 2.90
335 336 5.422331 AGAATAGGAGAGTCACGGAAAATGA 59.578 40.000 0.00 0.00 0.00 2.57
336 337 5.665459 AGAATAGGAGAGTCACGGAAAATG 58.335 41.667 0.00 0.00 0.00 2.32
337 338 5.941555 AGAATAGGAGAGTCACGGAAAAT 57.058 39.130 0.00 0.00 0.00 1.82
338 339 5.740290 AAGAATAGGAGAGTCACGGAAAA 57.260 39.130 0.00 0.00 0.00 2.29
339 340 6.452494 CTAAGAATAGGAGAGTCACGGAAA 57.548 41.667 0.00 0.00 0.00 3.13
362 363 4.016444 TGGTTCACAGCATAGGAAAATCC 58.984 43.478 0.00 0.00 36.58 3.01
363 364 5.643379 TTGGTTCACAGCATAGGAAAATC 57.357 39.130 0.00 0.00 0.00 2.17
364 365 5.774690 TCTTTGGTTCACAGCATAGGAAAAT 59.225 36.000 0.00 0.00 32.17 1.82
365 366 5.136828 TCTTTGGTTCACAGCATAGGAAAA 58.863 37.500 0.00 0.00 32.17 2.29
366 367 4.724399 TCTTTGGTTCACAGCATAGGAAA 58.276 39.130 0.00 0.00 32.17 3.13
367 368 4.365514 TCTTTGGTTCACAGCATAGGAA 57.634 40.909 0.00 0.00 32.17 3.36
368 369 4.326826 CTTCTTTGGTTCACAGCATAGGA 58.673 43.478 0.00 0.00 32.17 2.94
369 370 3.441572 CCTTCTTTGGTTCACAGCATAGG 59.558 47.826 0.00 0.00 32.17 2.57
370 371 3.119708 GCCTTCTTTGGTTCACAGCATAG 60.120 47.826 0.00 0.00 32.45 2.23
371 372 2.819608 GCCTTCTTTGGTTCACAGCATA 59.180 45.455 0.00 0.00 0.00 3.14
372 373 1.615392 GCCTTCTTTGGTTCACAGCAT 59.385 47.619 0.00 0.00 0.00 3.79
373 374 1.032014 GCCTTCTTTGGTTCACAGCA 58.968 50.000 0.00 0.00 0.00 4.41
374 375 0.315251 GGCCTTCTTTGGTTCACAGC 59.685 55.000 0.00 0.00 0.00 4.40
375 376 1.986882 AGGCCTTCTTTGGTTCACAG 58.013 50.000 0.00 0.00 0.00 3.66
376 377 3.806949 ATAGGCCTTCTTTGGTTCACA 57.193 42.857 12.58 0.00 0.00 3.58
377 378 7.454225 AGATATATAGGCCTTCTTTGGTTCAC 58.546 38.462 12.58 0.00 0.00 3.18
378 379 7.633018 AGATATATAGGCCTTCTTTGGTTCA 57.367 36.000 12.58 0.00 0.00 3.18
379 380 8.926092 AAAGATATATAGGCCTTCTTTGGTTC 57.074 34.615 22.80 7.32 35.81 3.62
381 382 9.794719 GTTAAAGATATATAGGCCTTCTTTGGT 57.205 33.333 28.24 13.20 37.26 3.67
382 383 9.793259 TGTTAAAGATATATAGGCCTTCTTTGG 57.207 33.333 28.24 0.00 37.26 3.28
390 391 9.088512 CGTGAAGATGTTAAAGATATATAGGCC 57.911 37.037 0.00 0.00 0.00 5.19
391 392 8.596380 GCGTGAAGATGTTAAAGATATATAGGC 58.404 37.037 0.00 0.00 0.00 3.93
392 393 9.639601 TGCGTGAAGATGTTAAAGATATATAGG 57.360 33.333 0.00 0.00 0.00 2.57
396 397 9.639601 CCTATGCGTGAAGATGTTAAAGATATA 57.360 33.333 0.00 0.00 0.00 0.86
397 398 8.367911 TCCTATGCGTGAAGATGTTAAAGATAT 58.632 33.333 0.00 0.00 0.00 1.63
398 399 7.722363 TCCTATGCGTGAAGATGTTAAAGATA 58.278 34.615 0.00 0.00 0.00 1.98
399 400 6.582636 TCCTATGCGTGAAGATGTTAAAGAT 58.417 36.000 0.00 0.00 0.00 2.40
400 401 5.972935 TCCTATGCGTGAAGATGTTAAAGA 58.027 37.500 0.00 0.00 0.00 2.52
401 402 6.851222 ATCCTATGCGTGAAGATGTTAAAG 57.149 37.500 0.00 0.00 0.00 1.85
402 403 7.441157 CCTAATCCTATGCGTGAAGATGTTAAA 59.559 37.037 0.00 0.00 0.00 1.52
403 404 6.929049 CCTAATCCTATGCGTGAAGATGTTAA 59.071 38.462 0.00 0.00 0.00 2.01
404 405 6.455647 CCTAATCCTATGCGTGAAGATGTTA 58.544 40.000 0.00 0.00 0.00 2.41
405 406 5.300752 CCTAATCCTATGCGTGAAGATGTT 58.699 41.667 0.00 0.00 0.00 2.71
406 407 4.262635 CCCTAATCCTATGCGTGAAGATGT 60.263 45.833 0.00 0.00 0.00 3.06
407 408 4.248859 CCCTAATCCTATGCGTGAAGATG 58.751 47.826 0.00 0.00 0.00 2.90
408 409 3.307059 GCCCTAATCCTATGCGTGAAGAT 60.307 47.826 0.00 0.00 0.00 2.40
409 410 2.037251 GCCCTAATCCTATGCGTGAAGA 59.963 50.000 0.00 0.00 0.00 2.87
410 411 2.224281 TGCCCTAATCCTATGCGTGAAG 60.224 50.000 0.00 0.00 0.00 3.02
411 412 1.765904 TGCCCTAATCCTATGCGTGAA 59.234 47.619 0.00 0.00 0.00 3.18
412 413 1.419381 TGCCCTAATCCTATGCGTGA 58.581 50.000 0.00 0.00 0.00 4.35
413 414 1.873591 GTTGCCCTAATCCTATGCGTG 59.126 52.381 0.00 0.00 0.00 5.34
414 415 1.768870 AGTTGCCCTAATCCTATGCGT 59.231 47.619 0.00 0.00 0.00 5.24
415 416 2.037772 AGAGTTGCCCTAATCCTATGCG 59.962 50.000 0.00 0.00 0.00 4.73
416 417 3.778954 AGAGTTGCCCTAATCCTATGC 57.221 47.619 0.00 0.00 0.00 3.14
437 438 8.826710 CCGACTAATGTTCTATATTTTGAAGCA 58.173 33.333 0.00 0.00 0.00 3.91
438 439 8.827677 ACCGACTAATGTTCTATATTTTGAAGC 58.172 33.333 0.00 0.00 0.00 3.86
440 441 9.661563 ACACCGACTAATGTTCTATATTTTGAA 57.338 29.630 0.00 0.00 0.00 2.69
441 442 9.661563 AACACCGACTAATGTTCTATATTTTGA 57.338 29.630 0.00 0.00 33.80 2.69
446 447 9.204570 GCATAAACACCGACTAATGTTCTATAT 57.795 33.333 0.00 0.00 38.08 0.86
447 448 7.380333 CGCATAAACACCGACTAATGTTCTATA 59.620 37.037 0.00 0.00 38.08 1.31
448 449 6.200286 CGCATAAACACCGACTAATGTTCTAT 59.800 38.462 0.00 0.00 38.08 1.98
449 450 5.517411 CGCATAAACACCGACTAATGTTCTA 59.483 40.000 0.00 0.00 38.08 2.10
450 451 4.328983 CGCATAAACACCGACTAATGTTCT 59.671 41.667 0.00 0.00 38.08 3.01
451 452 4.092383 ACGCATAAACACCGACTAATGTTC 59.908 41.667 0.00 0.00 38.08 3.18
452 453 3.998341 ACGCATAAACACCGACTAATGTT 59.002 39.130 0.00 0.00 40.76 2.71
453 454 3.592059 ACGCATAAACACCGACTAATGT 58.408 40.909 0.00 0.00 0.00 2.71
454 455 4.142988 ACAACGCATAAACACCGACTAATG 60.143 41.667 0.00 0.00 0.00 1.90
455 456 3.998341 ACAACGCATAAACACCGACTAAT 59.002 39.130 0.00 0.00 0.00 1.73
456 457 3.391965 ACAACGCATAAACACCGACTAA 58.608 40.909 0.00 0.00 0.00 2.24
457 458 3.029320 ACAACGCATAAACACCGACTA 57.971 42.857 0.00 0.00 0.00 2.59
458 459 1.873698 ACAACGCATAAACACCGACT 58.126 45.000 0.00 0.00 0.00 4.18
459 460 2.673976 AACAACGCATAAACACCGAC 57.326 45.000 0.00 0.00 0.00 4.79
460 461 2.287069 CCAAACAACGCATAAACACCGA 60.287 45.455 0.00 0.00 0.00 4.69
461 462 2.047769 CCAAACAACGCATAAACACCG 58.952 47.619 0.00 0.00 0.00 4.94
462 463 3.357166 TCCAAACAACGCATAAACACC 57.643 42.857 0.00 0.00 0.00 4.16
463 464 3.487942 GGTTCCAAACAACGCATAAACAC 59.512 43.478 0.00 0.00 0.00 3.32
464 465 3.381908 AGGTTCCAAACAACGCATAAACA 59.618 39.130 0.00 0.00 0.00 2.83
465 466 3.733727 CAGGTTCCAAACAACGCATAAAC 59.266 43.478 0.00 0.00 0.00 2.01
466 467 3.381908 ACAGGTTCCAAACAACGCATAAA 59.618 39.130 0.00 0.00 0.00 1.40
467 468 2.952978 ACAGGTTCCAAACAACGCATAA 59.047 40.909 0.00 0.00 0.00 1.90
468 469 2.577700 ACAGGTTCCAAACAACGCATA 58.422 42.857 0.00 0.00 0.00 3.14
469 470 1.398692 ACAGGTTCCAAACAACGCAT 58.601 45.000 0.00 0.00 0.00 4.73
470 471 1.178276 AACAGGTTCCAAACAACGCA 58.822 45.000 0.00 0.00 0.00 5.24
471 472 2.097791 TGTAACAGGTTCCAAACAACGC 59.902 45.455 0.00 0.00 0.00 4.84
472 473 4.358494 TTGTAACAGGTTCCAAACAACG 57.642 40.909 0.00 0.00 0.00 4.10
473 474 5.803461 GTCTTTGTAACAGGTTCCAAACAAC 59.197 40.000 0.00 0.00 27.99 3.32
474 475 5.712917 AGTCTTTGTAACAGGTTCCAAACAA 59.287 36.000 0.00 0.00 27.99 2.83
475 476 5.258051 AGTCTTTGTAACAGGTTCCAAACA 58.742 37.500 0.00 0.00 27.99 2.83
476 477 5.830000 AGTCTTTGTAACAGGTTCCAAAC 57.170 39.130 0.00 0.00 27.99 2.93
477 478 7.340256 TCTTAGTCTTTGTAACAGGTTCCAAA 58.660 34.615 3.44 3.44 29.79 3.28
478 479 6.891388 TCTTAGTCTTTGTAACAGGTTCCAA 58.109 36.000 0.00 0.00 0.00 3.53
479 480 6.488769 TCTTAGTCTTTGTAACAGGTTCCA 57.511 37.500 0.00 0.00 0.00 3.53
480 481 5.408909 GCTCTTAGTCTTTGTAACAGGTTCC 59.591 44.000 0.00 0.00 0.00 3.62
481 482 5.408909 GGCTCTTAGTCTTTGTAACAGGTTC 59.591 44.000 0.00 0.00 0.00 3.62
482 483 5.306394 GGCTCTTAGTCTTTGTAACAGGTT 58.694 41.667 0.00 0.00 0.00 3.50
483 484 4.262938 GGGCTCTTAGTCTTTGTAACAGGT 60.263 45.833 0.00 0.00 0.00 4.00
484 485 4.254492 GGGCTCTTAGTCTTTGTAACAGG 58.746 47.826 0.00 0.00 0.00 4.00
485 486 3.927142 CGGGCTCTTAGTCTTTGTAACAG 59.073 47.826 0.00 0.00 0.00 3.16
486 487 3.575256 TCGGGCTCTTAGTCTTTGTAACA 59.425 43.478 0.00 0.00 0.00 2.41
487 488 3.925299 GTCGGGCTCTTAGTCTTTGTAAC 59.075 47.826 0.00 0.00 0.00 2.50
488 489 3.575256 TGTCGGGCTCTTAGTCTTTGTAA 59.425 43.478 0.00 0.00 0.00 2.41
489 490 3.159472 TGTCGGGCTCTTAGTCTTTGTA 58.841 45.455 0.00 0.00 0.00 2.41
490 491 1.968493 TGTCGGGCTCTTAGTCTTTGT 59.032 47.619 0.00 0.00 0.00 2.83
491 492 2.737252 GTTGTCGGGCTCTTAGTCTTTG 59.263 50.000 0.00 0.00 0.00 2.77
492 493 2.633481 AGTTGTCGGGCTCTTAGTCTTT 59.367 45.455 0.00 0.00 0.00 2.52
493 494 2.249139 AGTTGTCGGGCTCTTAGTCTT 58.751 47.619 0.00 0.00 0.00 3.01
494 495 1.926108 AGTTGTCGGGCTCTTAGTCT 58.074 50.000 0.00 0.00 0.00 3.24
495 496 2.099427 CCTAGTTGTCGGGCTCTTAGTC 59.901 54.545 0.00 0.00 0.00 2.59
496 497 2.100989 CCTAGTTGTCGGGCTCTTAGT 58.899 52.381 0.00 0.00 0.00 2.24
497 498 2.099427 GTCCTAGTTGTCGGGCTCTTAG 59.901 54.545 0.00 0.00 0.00 2.18
506 507 2.094649 GGAAGAGGTGTCCTAGTTGTCG 60.095 54.545 0.00 0.00 31.76 4.35
564 565 8.636213 CATGCCTCCTAAAATCAATAGTTCAAT 58.364 33.333 0.00 0.00 0.00 2.57
567 568 7.807977 TCATGCCTCCTAAAATCAATAGTTC 57.192 36.000 0.00 0.00 0.00 3.01
594 595 6.599244 CCTTTTCTTGTTAGCATCTCATGGTA 59.401 38.462 0.00 0.00 41.83 3.25
601 602 5.014228 ACCCTACCTTTTCTTGTTAGCATCT 59.986 40.000 0.00 0.00 0.00 2.90
603 604 5.010282 CACCCTACCTTTTCTTGTTAGCAT 58.990 41.667 0.00 0.00 0.00 3.79
604 605 4.394729 CACCCTACCTTTTCTTGTTAGCA 58.605 43.478 0.00 0.00 0.00 3.49
664 665 7.822334 TCAAAGGAAAACTAGCTCGATGAATTA 59.178 33.333 0.00 0.00 0.00 1.40
672 673 5.418310 TTGTTCAAAGGAAAACTAGCTCG 57.582 39.130 0.00 0.00 34.13 5.03
676 677 9.586435 AATCAGTTTTGTTCAAAGGAAAACTAG 57.414 29.630 0.00 0.00 44.31 2.57
726 727 6.061441 TGCGGGTAACATTCAATATTCTCAT 58.939 36.000 0.00 0.00 39.74 2.90
830 995 6.166279 CAGGAGTTGTTCTTGCTCTGTATTA 58.834 40.000 0.00 0.00 0.00 0.98
831 996 4.999950 CAGGAGTTGTTCTTGCTCTGTATT 59.000 41.667 0.00 0.00 0.00 1.89
834 999 2.171448 ACAGGAGTTGTTCTTGCTCTGT 59.829 45.455 0.00 0.00 36.31 3.41
838 1003 1.541233 CGGACAGGAGTTGTTCTTGCT 60.541 52.381 0.00 0.00 41.05 3.91
839 1004 0.868406 CGGACAGGAGTTGTTCTTGC 59.132 55.000 0.00 0.00 41.05 4.01
854 1019 4.344865 TTCAAGCCCAGCCCGGAC 62.345 66.667 0.73 0.00 36.56 4.79
880 1045 1.558294 GTTAGGGTTAGGGGGACACTG 59.442 57.143 0.00 0.00 32.03 3.66
886 1051 1.696965 GGTAGGGTTAGGGTTAGGGGG 60.697 61.905 0.00 0.00 0.00 5.40
891 1056 3.342517 TGGGTTAGGTAGGGTTAGGGTTA 59.657 47.826 0.00 0.00 0.00 2.85
892 1057 2.115973 TGGGTTAGGTAGGGTTAGGGTT 59.884 50.000 0.00 0.00 0.00 4.11
893 1058 1.729880 TGGGTTAGGTAGGGTTAGGGT 59.270 52.381 0.00 0.00 0.00 4.34
894 1059 2.121948 GTGGGTTAGGTAGGGTTAGGG 58.878 57.143 0.00 0.00 0.00 3.53
895 1060 2.502947 GTGTGGGTTAGGTAGGGTTAGG 59.497 54.545 0.00 0.00 0.00 2.69
896 1061 2.167075 CGTGTGGGTTAGGTAGGGTTAG 59.833 54.545 0.00 0.00 0.00 2.34
897 1062 2.178580 CGTGTGGGTTAGGTAGGGTTA 58.821 52.381 0.00 0.00 0.00 2.85
923 1088 2.034221 GCCTCCCCTGAACACACC 59.966 66.667 0.00 0.00 0.00 4.16
928 1093 2.932130 GATGAGCGCCTCCCCTGAAC 62.932 65.000 2.29 0.00 0.00 3.18
929 1094 2.688666 ATGAGCGCCTCCCCTGAA 60.689 61.111 2.29 0.00 0.00 3.02
930 1095 3.157252 GATGAGCGCCTCCCCTGA 61.157 66.667 2.29 0.00 0.00 3.86
960 1125 1.405463 TCGATCTGATGTCCAAGACGG 59.595 52.381 0.00 0.00 34.95 4.79
961 1126 2.851805 TCGATCTGATGTCCAAGACG 57.148 50.000 0.00 0.00 34.95 4.18
962 1127 4.054671 GGATTCGATCTGATGTCCAAGAC 58.945 47.826 0.00 0.00 33.88 3.01
963 1128 3.706086 TGGATTCGATCTGATGTCCAAGA 59.294 43.478 14.10 0.00 38.24 3.02
964 1129 3.806521 GTGGATTCGATCTGATGTCCAAG 59.193 47.826 16.25 0.00 41.01 3.61
965 1130 3.737972 CGTGGATTCGATCTGATGTCCAA 60.738 47.826 16.25 6.08 41.01 3.53
966 1131 2.223805 CGTGGATTCGATCTGATGTCCA 60.224 50.000 0.00 13.20 38.63 4.02
967 1132 2.398498 CGTGGATTCGATCTGATGTCC 58.602 52.381 0.00 0.00 34.14 4.02
968 1133 2.398498 CCGTGGATTCGATCTGATGTC 58.602 52.381 0.00 0.00 0.00 3.06
969 1134 1.539065 GCCGTGGATTCGATCTGATGT 60.539 52.381 0.00 0.00 0.00 3.06
970 1135 1.143305 GCCGTGGATTCGATCTGATG 58.857 55.000 0.00 0.00 0.00 3.07
971 1136 0.319040 CGCCGTGGATTCGATCTGAT 60.319 55.000 0.00 0.00 0.00 2.90
1274 1439 1.228583 AGGAGCTCCGTCTGTGTGA 60.229 57.895 26.95 0.00 42.08 3.58
1278 1443 2.681778 CCCAGGAGCTCCGTCTGT 60.682 66.667 26.95 6.35 42.08 3.41
1339 1504 0.606401 CTGCCCACCAGTTTGATCGT 60.606 55.000 0.00 0.00 36.79 3.73
1347 1512 3.177884 TTGAGCCTGCCCACCAGT 61.178 61.111 0.00 0.00 40.06 4.00
1534 1699 0.319900 ATGAGCTGCTTCGTCACGTT 60.320 50.000 2.53 0.00 0.00 3.99
1538 1703 0.174389 GAGGATGAGCTGCTTCGTCA 59.826 55.000 15.45 5.65 36.28 4.35
1556 1721 4.790962 CGGGAGGGAGGACGTCGA 62.791 72.222 9.92 0.00 34.85 4.20
1632 1797 3.000819 TCGAACGGCTGGGACCAT 61.001 61.111 0.00 0.00 0.00 3.55
1713 1878 2.527100 GCGATGTACTGTGACTGGTAC 58.473 52.381 10.68 10.68 38.82 3.34
1714 1879 1.131693 CGCGATGTACTGTGACTGGTA 59.868 52.381 0.00 0.00 0.00 3.25
1776 1941 1.817357 CAGCTTGCTGATCCACTTCA 58.183 50.000 16.78 0.00 0.00 3.02
1779 1944 0.034380 ATGCAGCTTGCTGATCCACT 60.034 50.000 24.67 3.31 45.31 4.00
1828 1996 3.134985 AGATAGGCGAGACTGAGAGTGTA 59.865 47.826 0.00 0.00 0.00 2.90
1846 2014 0.666913 GCCGCCTTGTCGTAGAGATA 59.333 55.000 0.00 0.00 36.95 1.98
1865 2033 1.068541 TGATGAACTCTGGTGTCGACG 60.069 52.381 11.62 0.00 0.00 5.12
1935 2103 4.675510 ACTCGAACGTGAACTTGAACTTA 58.324 39.130 0.00 0.00 0.00 2.24
2131 2309 3.105283 GACCCACACTAGTAGTCCCAAT 58.895 50.000 0.00 0.00 0.00 3.16
2154 2332 2.905415 AATCCATCAGTGCCCTTGAA 57.095 45.000 0.00 0.00 0.00 2.69
2155 2333 2.827322 CAAAATCCATCAGTGCCCTTGA 59.173 45.455 0.00 0.00 0.00 3.02
2462 2661 5.212745 TGTTGTACCCCAGGATTTCTTTTT 58.787 37.500 0.00 0.00 0.00 1.94
2467 2666 4.526650 ACAATTGTTGTACCCCAGGATTTC 59.473 41.667 4.92 0.00 43.27 2.17
2547 3147 1.956477 ACAGCAACTCCACAAACCATC 59.044 47.619 0.00 0.00 0.00 3.51
2572 3172 4.696877 CAGTGGAATGAGCAGAAACATGTA 59.303 41.667 0.00 0.00 0.00 2.29
2577 3177 3.427233 GCATCAGTGGAATGAGCAGAAAC 60.427 47.826 0.00 0.00 31.44 2.78
2633 3247 6.349300 AGAATAGATGTTGTTATCCGCAACT 58.651 36.000 9.16 0.00 44.54 3.16
2662 3276 5.014544 CCCTCCCTTTCCATCACATATATGT 59.985 44.000 12.75 12.75 42.84 2.29
2663 3277 5.503927 CCCTCCCTTTCCATCACATATATG 58.496 45.833 11.29 11.29 0.00 1.78
2668 3282 0.929244 CCCCTCCCTTTCCATCACAT 59.071 55.000 0.00 0.00 0.00 3.21
2672 3286 1.149101 TATGCCCCTCCCTTTCCATC 58.851 55.000 0.00 0.00 0.00 3.51
2677 3291 1.064825 CCGTATATGCCCCTCCCTTT 58.935 55.000 0.00 0.00 0.00 3.11
2682 3296 1.207329 GACCATCCGTATATGCCCCTC 59.793 57.143 0.00 0.00 0.00 4.30
2684 3298 0.981183 TGACCATCCGTATATGCCCC 59.019 55.000 0.00 0.00 0.00 5.80
2685 3299 2.027192 ACATGACCATCCGTATATGCCC 60.027 50.000 0.00 0.00 0.00 5.36
2690 3304 2.631062 GACCCACATGACCATCCGTATA 59.369 50.000 0.00 0.00 0.00 1.47
2692 3306 0.828022 GACCCACATGACCATCCGTA 59.172 55.000 0.00 0.00 0.00 4.02
2699 3313 3.140325 TCAAAGAAGACCCACATGACC 57.860 47.619 0.00 0.00 0.00 4.02
2708 3322 4.681744 TGTTGCACATTTCAAAGAAGACC 58.318 39.130 0.00 0.00 0.00 3.85
2709 3323 4.207841 GCTGTTGCACATTTCAAAGAAGAC 59.792 41.667 0.00 0.00 39.41 3.01
2716 3330 0.743688 ACCGCTGTTGCACATTTCAA 59.256 45.000 0.00 0.00 39.64 2.69
2720 3334 2.014064 TTGCACCGCTGTTGCACATT 62.014 50.000 3.48 0.00 38.37 2.71
2724 3338 4.268939 GCTTGCACCGCTGTTGCA 62.269 61.111 0.05 0.05 39.64 4.08
2732 3346 1.845809 GAAGTGTCTGGCTTGCACCG 61.846 60.000 0.00 0.00 33.96 4.94
2768 3383 0.171903 AAATGCAGATGAGCGCCAAC 59.828 50.000 2.29 0.29 37.31 3.77
2770 3385 1.016627 GTAAATGCAGATGAGCGCCA 58.983 50.000 2.29 1.52 37.31 5.69
2773 3388 2.286294 GTCCAGTAAATGCAGATGAGCG 59.714 50.000 0.00 0.00 37.31 5.03
2787 3402 4.262894 CCAAAGCCTTACTCTTGTCCAGTA 60.263 45.833 0.00 0.00 0.00 2.74
2793 3408 3.857157 TCACCAAAGCCTTACTCTTGT 57.143 42.857 0.00 0.00 0.00 3.16
2816 3434 6.059484 TCACCTTTTCAAAATAACCGAGAGT 58.941 36.000 0.00 0.00 0.00 3.24
2821 3439 5.227152 CCCTTCACCTTTTCAAAATAACCG 58.773 41.667 0.00 0.00 0.00 4.44
2824 3442 5.878406 TGCCCTTCACCTTTTCAAAATAA 57.122 34.783 0.00 0.00 0.00 1.40
2833 3451 0.112995 TCTGCATGCCCTTCACCTTT 59.887 50.000 16.68 0.00 0.00 3.11
2837 3455 0.524862 CAAGTCTGCATGCCCTTCAC 59.475 55.000 16.68 4.41 0.00 3.18
2849 3467 2.102252 GGCTGGTATCTCTCCAAGTCTG 59.898 54.545 0.00 0.00 34.35 3.51
2854 3472 1.860641 TTCGGCTGGTATCTCTCCAA 58.139 50.000 0.00 0.00 34.35 3.53
2903 3521 0.179150 GTCTCTAGCCTGAGCACACG 60.179 60.000 0.00 0.00 43.56 4.49
2912 3530 1.546476 CCTGTTTCGTGTCTCTAGCCT 59.454 52.381 0.00 0.00 0.00 4.58
2919 3537 1.227853 GCCCACCTGTTTCGTGTCT 60.228 57.895 0.00 0.00 0.00 3.41
2945 3563 2.305009 GGCTTTCATCCAGATCCTTGG 58.695 52.381 0.00 0.00 39.70 3.61
3019 3643 1.750206 CCATCCGTTTGATCATGCCAA 59.250 47.619 0.00 0.00 0.00 4.52
3047 3735 3.878778 CCTGGGTTTATTGACAGAGGAG 58.121 50.000 0.00 0.00 32.86 3.69
3053 3741 1.349688 ACTCGCCTGGGTTTATTGACA 59.650 47.619 0.00 0.00 0.00 3.58
3069 3757 2.032549 CAGAGTTTGAGGTTTGCACTCG 60.033 50.000 0.00 0.00 39.14 4.18
3112 3800 5.579511 CCAGCCATTTCAGAATTGCTTAAAG 59.420 40.000 0.15 0.00 40.27 1.85
3126 3814 2.680577 CTTGCTTGAACCAGCCATTTC 58.319 47.619 0.00 0.00 39.25 2.17
3135 3823 2.531522 AACATTGGCTTGCTTGAACC 57.468 45.000 0.00 0.00 0.00 3.62
3176 3864 1.281419 TGGGATTTTACTCGGAGGCA 58.719 50.000 10.23 0.00 0.00 4.75
3191 3879 9.722317 AAGTTTGAATTGGGTAATATATTGGGA 57.278 29.630 8.28 0.00 0.00 4.37
3234 4012 2.061028 CCCGTTTCTGAATTGCTTTGC 58.939 47.619 0.00 0.00 0.00 3.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.