Multiple sequence alignment - TraesCS6B01G058000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G058000 chr6B 100.000 5813 0 0 513 6325 38617516 38623328 0.000000e+00 10735.0
1 TraesCS6B01G058000 chr6B 92.978 1296 65 16 3358 4641 46649748 46648467 0.000000e+00 1866.0
2 TraesCS6B01G058000 chr6B 88.217 1290 62 46 552 1789 46652199 46650948 0.000000e+00 1458.0
3 TraesCS6B01G058000 chr6B 93.866 701 43 0 4774 5474 46626526 46625826 0.000000e+00 1057.0
4 TraesCS6B01G058000 chr6B 82.239 1036 133 27 3532 4546 584224584 584223579 0.000000e+00 846.0
5 TraesCS6B01G058000 chr6B 87.744 718 58 17 5554 6262 46622323 46621627 0.000000e+00 811.0
6 TraesCS6B01G058000 chr6B 84.120 699 55 29 2687 3361 46650489 46649823 5.380000e-175 625.0
7 TraesCS6B01G058000 chr6B 100.000 278 0 0 1 278 38617004 38617281 1.220000e-141 514.0
8 TraesCS6B01G058000 chr6B 91.848 368 23 6 2151 2516 46650940 46650578 2.030000e-139 507.0
9 TraesCS6B01G058000 chr6B 84.848 297 36 8 6036 6325 584222593 584222299 2.230000e-74 291.0
10 TraesCS6B01G058000 chr6B 93.125 160 9 2 4626 4785 46627172 46627015 3.810000e-57 233.0
11 TraesCS6B01G058000 chr6B 84.332 217 28 5 3215 3426 584225249 584225034 2.310000e-49 207.0
12 TraesCS6B01G058000 chr6B 97.196 107 2 1 2591 2696 516087995 516087889 5.040000e-41 180.0
13 TraesCS6B01G058000 chr6B 100.000 58 0 0 1817 1874 38618763 38618820 2.410000e-19 108.0
14 TraesCS6B01G058000 chr6B 100.000 58 0 0 1760 1817 38618820 38618877 2.410000e-19 108.0
15 TraesCS6B01G058000 chr6B 94.366 71 3 1 6255 6325 46621605 46621536 2.410000e-19 108.0
16 TraesCS6B01G058000 chr6B 96.667 60 2 0 5468 5527 46622381 46622322 4.030000e-17 100.0
17 TraesCS6B01G058000 chr6B 92.857 56 3 1 216 271 30084162 30084108 5.260000e-11 80.5
18 TraesCS6B01G058000 chr6B 92.857 56 3 1 216 271 30100412 30100358 5.260000e-11 80.5
19 TraesCS6B01G058000 chr6D 93.161 2939 134 29 2730 5649 23738175 23741065 0.000000e+00 4252.0
20 TraesCS6B01G058000 chr6D 80.421 1379 186 51 3215 4546 389982458 389983799 0.000000e+00 974.0
21 TraesCS6B01G058000 chr6D 88.406 690 49 13 5644 6325 23745793 23746459 0.000000e+00 802.0
22 TraesCS6B01G058000 chr6D 92.668 491 29 5 1308 1795 23737030 23737516 0.000000e+00 701.0
23 TraesCS6B01G058000 chr6D 86.290 620 44 22 1910 2515 23737514 23738106 2.490000e-178 636.0
24 TraesCS6B01G058000 chr6D 92.000 400 20 7 515 914 23735926 23736313 9.270000e-153 551.0
25 TraesCS6B01G058000 chr6D 83.646 373 18 12 904 1233 23736605 23736977 1.710000e-80 311.0
26 TraesCS6B01G058000 chr6D 83.094 278 33 11 6055 6325 389984756 389985026 2.280000e-59 241.0
27 TraesCS6B01G058000 chr6A 93.575 2459 121 9 3203 5653 22348125 22350554 0.000000e+00 3631.0
28 TraesCS6B01G058000 chr6A 92.410 1133 82 4 3926 5056 22264719 22265849 0.000000e+00 1613.0
29 TraesCS6B01G058000 chr6A 87.361 1353 88 35 518 1817 22345900 22347222 0.000000e+00 1474.0
30 TraesCS6B01G058000 chr6A 86.006 979 72 36 881 1816 22260144 22261100 0.000000e+00 989.0
31 TraesCS6B01G058000 chr6A 80.072 1380 184 45 3212 4546 536435316 536436649 0.000000e+00 941.0
32 TraesCS6B01G058000 chr6A 94.017 468 26 2 5051 5516 22270898 22271365 0.000000e+00 708.0
33 TraesCS6B01G058000 chr6A 91.535 508 34 8 2687 3189 22347637 22348140 0.000000e+00 691.0
34 TraesCS6B01G058000 chr6A 93.119 436 25 2 2687 3122 22261383 22261813 8.950000e-178 634.0
35 TraesCS6B01G058000 chr6A 92.308 442 23 6 3500 3938 22263295 22263728 9.010000e-173 617.0
36 TraesCS6B01G058000 chr6A 88.889 342 26 12 518 855 22276076 22275743 1.640000e-110 411.0
37 TraesCS6B01G058000 chr6A 95.473 243 6 2 3205 3444 22261840 22262080 3.580000e-102 383.0
38 TraesCS6B01G058000 chr6A 86.833 281 33 4 1298 1576 536434458 536434736 1.710000e-80 311.0
39 TraesCS6B01G058000 chr6A 89.744 234 11 6 613 846 22254635 22254855 2.890000e-73 287.0
40 TraesCS6B01G058000 chr6A 89.241 158 11 3 2330 2481 22347377 22347534 6.470000e-45 193.0
41 TraesCS6B01G058000 chr6A 93.805 113 5 1 6170 6280 22350668 22350556 1.090000e-37 169.0
42 TraesCS6B01G058000 chr6A 91.057 123 9 2 2590 2712 70931887 70931767 1.410000e-36 165.0
43 TraesCS6B01G058000 chr6A 92.857 56 2 2 216 271 189530749 189530802 5.260000e-11 80.5
44 TraesCS6B01G058000 chr3B 94.503 1419 71 2 3867 5284 745006035 745007447 0.000000e+00 2182.0
45 TraesCS6B01G058000 chr3B 86.428 781 63 19 2687 3460 744977330 744978074 0.000000e+00 815.0
46 TraesCS6B01G058000 chr3B 93.871 310 10 3 1439 1744 744976314 744976618 5.780000e-125 459.0
47 TraesCS6B01G058000 chr3B 92.857 280 11 3 3606 3881 744978074 744978348 1.280000e-106 398.0
48 TraesCS6B01G058000 chr3B 91.468 293 12 5 1103 1391 744976032 744976315 2.140000e-104 390.0
49 TraesCS6B01G058000 chr3B 91.273 275 23 1 2 276 816244636 816244363 2.150000e-99 374.0
50 TraesCS6B01G058000 chr3B 91.469 211 13 5 2308 2515 744976846 744977054 1.040000e-72 285.0
51 TraesCS6B01G058000 chr3B 83.212 137 18 5 1920 2053 463746105 463746239 3.100000e-23 121.0
52 TraesCS6B01G058000 chr3B 78.443 167 26 8 1890 2053 455409329 455409170 4.030000e-17 100.0
53 TraesCS6B01G058000 chr3B 93.220 59 4 0 1053 1111 744967056 744967114 3.140000e-13 87.9
54 TraesCS6B01G058000 chr3B 75.000 192 34 12 1981 2170 728131849 728131670 6.800000e-10 76.8
55 TraesCS6B01G058000 chr5B 89.818 275 28 0 2 276 659504299 659504573 2.810000e-93 353.0
56 TraesCS6B01G058000 chr5B 89.091 275 30 0 2 276 449653821 449654095 6.070000e-90 342.0
57 TraesCS6B01G058000 chr5B 98.095 105 1 1 2594 2698 704989272 704989375 1.400000e-41 182.0
58 TraesCS6B01G058000 chr5B 92.562 121 5 3 2593 2711 539328258 539328140 3.030000e-38 171.0
59 TraesCS6B01G058000 chr4D 87.410 278 31 2 2 276 460581275 460580999 3.680000e-82 316.0
60 TraesCS6B01G058000 chr5D 87.050 278 32 2 2 276 435794994 435794718 1.710000e-80 311.0
61 TraesCS6B01G058000 chr5D 80.412 97 15 4 1963 2056 546484905 546484810 3.160000e-08 71.3
62 TraesCS6B01G058000 chr2D 86.170 282 32 5 2 278 111228066 111228345 1.330000e-76 298.0
63 TraesCS6B01G058000 chr2D 99.000 100 1 0 2591 2690 107204179 107204080 5.040000e-41 180.0
64 TraesCS6B01G058000 chr7A 97.222 108 3 0 2594 2701 629780021 629780128 3.890000e-42 183.0
65 TraesCS6B01G058000 chr7B 99.010 101 1 0 2591 2691 159510701 159510601 1.400000e-41 182.0
66 TraesCS6B01G058000 chr7B 97.196 107 2 1 2590 2695 413721640 413721534 5.040000e-41 180.0
67 TraesCS6B01G058000 chrUn 95.536 112 3 2 2590 2701 100242107 100241998 1.810000e-40 178.0
68 TraesCS6B01G058000 chrUn 74.658 292 43 21 1892 2171 266221261 266221533 4.030000e-17 100.0
69 TraesCS6B01G058000 chrUn 74.658 292 43 21 1892 2171 266248056 266248328 4.030000e-17 100.0
70 TraesCS6B01G058000 chrUn 82.927 82 14 0 2184 2265 354372711 354372792 2.450000e-09 75.0
71 TraesCS6B01G058000 chrUn 90.385 52 2 2 2121 2171 65896517 65896468 1.470000e-06 65.8
72 TraesCS6B01G058000 chr2B 81.928 166 25 4 1884 2045 747809040 747809204 1.110000e-27 135.0
73 TraesCS6B01G058000 chr2B 82.927 82 14 0 2184 2265 42490034 42490115 2.450000e-09 75.0
74 TraesCS6B01G058000 chr5A 73.234 269 57 13 1891 2157 675961022 675961277 4.060000e-12 84.2
75 TraesCS6B01G058000 chr7D 72.603 292 50 23 1896 2159 269708162 269707873 1.140000e-07 69.4
76 TraesCS6B01G058000 chr7D 89.091 55 5 1 2105 2159 457180297 457180350 4.090000e-07 67.6
77 TraesCS6B01G058000 chr2A 95.122 41 2 0 2121 2161 765863632 765863672 1.470000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G058000 chr6B 38617004 38623328 6324 False 5624.50 10735 100.000000 1 6325 2 chr6B.!!$F1 6324
1 TraesCS6B01G058000 chr6B 46648467 46652199 3732 True 1114.00 1866 89.290750 552 4641 4 chr6B.!!$R5 4089
2 TraesCS6B01G058000 chr6B 46621536 46627172 5636 True 461.80 1057 93.153600 4626 6325 5 chr6B.!!$R4 1699
3 TraesCS6B01G058000 chr6B 584222299 584225249 2950 True 448.00 846 83.806333 3215 6325 3 chr6B.!!$R6 3110
4 TraesCS6B01G058000 chr6D 23735926 23741065 5139 False 1290.20 4252 89.553000 515 5649 5 chr6D.!!$F2 5134
5 TraesCS6B01G058000 chr6D 23745793 23746459 666 False 802.00 802 88.406000 5644 6325 1 chr6D.!!$F1 681
6 TraesCS6B01G058000 chr6D 389982458 389985026 2568 False 607.50 974 81.757500 3215 6325 2 chr6D.!!$F3 3110
7 TraesCS6B01G058000 chr6A 22345900 22350554 4654 False 1497.25 3631 90.428000 518 5653 4 chr6A.!!$F5 5135
8 TraesCS6B01G058000 chr6A 22260144 22265849 5705 False 847.20 1613 91.863200 881 5056 5 chr6A.!!$F4 4175
9 TraesCS6B01G058000 chr6A 536434458 536436649 2191 False 626.00 941 83.452500 1298 4546 2 chr6A.!!$F6 3248
10 TraesCS6B01G058000 chr3B 745006035 745007447 1412 False 2182.00 2182 94.503000 3867 5284 1 chr3B.!!$F3 1417
11 TraesCS6B01G058000 chr3B 744976032 744978348 2316 False 469.40 815 91.218600 1103 3881 5 chr3B.!!$F4 2778

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
181 182 0.031449 CCCCGCTTCTTCGATCTCTC 59.969 60.0 0.0 0.0 0.00 3.20 F
274 275 0.040646 GAGGGGTTTAGGGTTTGGGG 59.959 60.0 0.0 0.0 0.00 4.96 F
995 1327 0.449786 CGCAACACAACACACCTCAA 59.550 50.0 0.0 0.0 0.00 3.02 F
2602 3433 0.107459 ACGACGGTAGTACTCCCTCC 60.107 60.0 0.0 0.0 0.00 4.30 F
3133 4040 0.031585 TCGTGACCGTTTCAGAGGTG 59.968 55.0 0.0 0.0 41.51 4.00 F
4104 7686 1.045407 ACAACGAGCTAACCTGTGGA 58.955 50.0 0.0 0.0 0.00 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1996 2403 0.798776 GCACGCTAAACATGCTGAGT 59.201 50.0 0.00 0.00 33.76 3.41 R
2188 2607 0.895530 GAGTGGGTGAGATCGGTTGA 59.104 55.0 0.00 0.00 0.00 3.18 R
2987 3876 0.179156 CAATGCGCTTCGGAAATGCT 60.179 50.0 9.73 0.08 0.00 3.79 R
4224 7807 0.313987 TATCGCTGCATGTACCGAGG 59.686 55.0 7.28 0.00 32.86 4.63 R
4266 7849 2.287373 GCAAATGCGATCTTCTGAGGAG 59.713 50.0 0.00 0.00 0.00 3.69 R
5980 13570 0.034756 CCTGTGATGTGTTGTCCGGA 59.965 55.0 0.00 0.00 0.00 5.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.182030 GGGACCGCTCTCAACTCG 59.818 66.667 0.00 0.00 0.00 4.18
18 19 2.341101 GGGACCGCTCTCAACTCGA 61.341 63.158 0.00 0.00 0.00 4.04
19 20 1.668101 GGGACCGCTCTCAACTCGAT 61.668 60.000 0.00 0.00 0.00 3.59
20 21 0.248702 GGACCGCTCTCAACTCGATC 60.249 60.000 0.00 0.00 0.00 3.69
21 22 0.452184 GACCGCTCTCAACTCGATCA 59.548 55.000 0.00 0.00 0.00 2.92
22 23 1.066303 GACCGCTCTCAACTCGATCAT 59.934 52.381 0.00 0.00 0.00 2.45
23 24 1.066303 ACCGCTCTCAACTCGATCATC 59.934 52.381 0.00 0.00 0.00 2.92
24 25 1.393726 CGCTCTCAACTCGATCATCG 58.606 55.000 0.00 0.00 42.10 3.84
35 36 1.882623 TCGATCATCGATCACCAGAGG 59.117 52.381 5.39 0.00 44.82 3.69
36 37 1.882623 CGATCATCGATCACCAGAGGA 59.117 52.381 0.00 0.00 43.74 3.71
37 38 2.095314 CGATCATCGATCACCAGAGGAG 60.095 54.545 0.00 0.00 43.74 3.69
38 39 2.443958 TCATCGATCACCAGAGGAGT 57.556 50.000 0.00 0.00 0.00 3.85
39 40 2.739943 TCATCGATCACCAGAGGAGTT 58.260 47.619 0.00 0.00 0.00 3.01
40 41 2.428530 TCATCGATCACCAGAGGAGTTG 59.571 50.000 0.00 0.00 0.00 3.16
41 42 0.532573 TCGATCACCAGAGGAGTTGC 59.467 55.000 0.00 0.00 0.00 4.17
42 43 0.534412 CGATCACCAGAGGAGTTGCT 59.466 55.000 0.00 0.00 0.00 3.91
43 44 1.066573 CGATCACCAGAGGAGTTGCTT 60.067 52.381 0.00 0.00 0.00 3.91
44 45 2.626840 GATCACCAGAGGAGTTGCTTC 58.373 52.381 0.00 0.00 0.00 3.86
45 46 1.722034 TCACCAGAGGAGTTGCTTCT 58.278 50.000 0.00 0.00 32.37 2.85
46 47 2.050144 TCACCAGAGGAGTTGCTTCTT 58.950 47.619 0.00 0.00 29.18 2.52
47 48 2.037772 TCACCAGAGGAGTTGCTTCTTC 59.962 50.000 0.00 0.00 29.18 2.87
48 49 1.349357 ACCAGAGGAGTTGCTTCTTCC 59.651 52.381 0.00 0.00 29.18 3.46
49 50 1.627834 CCAGAGGAGTTGCTTCTTCCT 59.372 52.381 0.00 0.00 29.18 3.36
50 51 2.614987 CCAGAGGAGTTGCTTCTTCCTG 60.615 54.545 0.00 0.00 29.18 3.86
51 52 2.301296 CAGAGGAGTTGCTTCTTCCTGA 59.699 50.000 0.00 0.00 29.18 3.86
52 53 2.566724 AGAGGAGTTGCTTCTTCCTGAG 59.433 50.000 0.00 0.00 26.48 3.35
53 54 2.564947 GAGGAGTTGCTTCTTCCTGAGA 59.435 50.000 0.00 0.00 0.00 3.27
54 55 2.566724 AGGAGTTGCTTCTTCCTGAGAG 59.433 50.000 0.00 0.00 35.37 3.20
55 56 2.564947 GGAGTTGCTTCTTCCTGAGAGA 59.435 50.000 0.00 0.00 35.37 3.10
56 57 3.197549 GGAGTTGCTTCTTCCTGAGAGAT 59.802 47.826 0.00 0.00 35.37 2.75
57 58 4.404073 GGAGTTGCTTCTTCCTGAGAGATA 59.596 45.833 0.00 0.00 35.37 1.98
58 59 5.070313 GGAGTTGCTTCTTCCTGAGAGATAT 59.930 44.000 0.00 0.00 35.37 1.63
59 60 6.160576 AGTTGCTTCTTCCTGAGAGATATC 57.839 41.667 0.00 0.00 35.37 1.63
60 61 5.070313 AGTTGCTTCTTCCTGAGAGATATCC 59.930 44.000 0.00 0.00 35.37 2.59
61 62 4.550669 TGCTTCTTCCTGAGAGATATCCA 58.449 43.478 0.00 0.00 35.37 3.41
62 63 4.964897 TGCTTCTTCCTGAGAGATATCCAA 59.035 41.667 0.00 0.00 35.37 3.53
63 64 5.605908 TGCTTCTTCCTGAGAGATATCCAAT 59.394 40.000 0.00 0.00 35.37 3.16
64 65 6.100859 TGCTTCTTCCTGAGAGATATCCAATT 59.899 38.462 0.00 0.00 35.37 2.32
65 66 6.997476 GCTTCTTCCTGAGAGATATCCAATTT 59.003 38.462 0.00 0.00 35.37 1.82
66 67 7.041235 GCTTCTTCCTGAGAGATATCCAATTTG 60.041 40.741 0.00 0.00 35.37 2.32
67 68 6.294473 TCTTCCTGAGAGATATCCAATTTGC 58.706 40.000 0.00 0.00 0.00 3.68
68 69 4.978099 TCCTGAGAGATATCCAATTTGCC 58.022 43.478 0.00 0.00 0.00 4.52
69 70 4.077822 CCTGAGAGATATCCAATTTGCCC 58.922 47.826 0.00 0.00 0.00 5.36
70 71 4.446745 CCTGAGAGATATCCAATTTGCCCA 60.447 45.833 0.00 0.00 0.00 5.36
71 72 4.722220 TGAGAGATATCCAATTTGCCCAG 58.278 43.478 0.00 0.00 0.00 4.45
72 73 4.413189 TGAGAGATATCCAATTTGCCCAGA 59.587 41.667 0.00 0.00 0.00 3.86
73 74 4.983053 AGAGATATCCAATTTGCCCAGAG 58.017 43.478 0.00 0.00 0.00 3.35
74 75 3.494332 AGATATCCAATTTGCCCAGAGC 58.506 45.455 0.00 0.00 44.14 4.09
75 76 2.071778 TATCCAATTTGCCCAGAGCC 57.928 50.000 0.00 0.00 42.71 4.70
76 77 0.337428 ATCCAATTTGCCCAGAGCCT 59.663 50.000 0.00 0.00 42.71 4.58
77 78 0.323725 TCCAATTTGCCCAGAGCCTC 60.324 55.000 0.00 0.00 42.71 4.70
78 79 1.325476 CCAATTTGCCCAGAGCCTCC 61.325 60.000 0.00 0.00 42.71 4.30
79 80 0.324091 CAATTTGCCCAGAGCCTCCT 60.324 55.000 0.00 0.00 42.71 3.69
80 81 0.033699 AATTTGCCCAGAGCCTCCTC 60.034 55.000 0.00 0.00 42.71 3.71
82 83 0.252696 TTTGCCCAGAGCCTCCTCTA 60.253 55.000 0.00 0.00 46.59 2.43
83 84 0.689080 TTGCCCAGAGCCTCCTCTAG 60.689 60.000 0.00 0.00 46.59 2.43
84 85 1.075600 GCCCAGAGCCTCCTCTAGT 60.076 63.158 0.00 0.00 46.59 2.57
85 86 0.689412 GCCCAGAGCCTCCTCTAGTT 60.689 60.000 0.00 0.00 46.59 2.24
86 87 1.872773 CCCAGAGCCTCCTCTAGTTT 58.127 55.000 0.00 0.00 46.59 2.66
87 88 1.760029 CCCAGAGCCTCCTCTAGTTTC 59.240 57.143 0.00 0.00 46.59 2.78
88 89 1.760029 CCAGAGCCTCCTCTAGTTTCC 59.240 57.143 0.00 0.00 46.59 3.13
89 90 1.407258 CAGAGCCTCCTCTAGTTTCCG 59.593 57.143 0.00 0.00 46.59 4.30
90 91 0.103390 GAGCCTCCTCTAGTTTCCGC 59.897 60.000 0.00 0.00 35.16 5.54
91 92 1.144276 GCCTCCTCTAGTTTCCGCC 59.856 63.158 0.00 0.00 0.00 6.13
92 93 1.437986 CCTCCTCTAGTTTCCGCCG 59.562 63.158 0.00 0.00 0.00 6.46
93 94 1.035932 CCTCCTCTAGTTTCCGCCGA 61.036 60.000 0.00 0.00 0.00 5.54
94 95 0.382515 CTCCTCTAGTTTCCGCCGAG 59.617 60.000 0.00 0.00 0.00 4.63
95 96 1.227002 CCTCTAGTTTCCGCCGAGC 60.227 63.158 0.00 0.00 0.00 5.03
138 139 4.029809 GCCCCCGCACCAGTACTT 62.030 66.667 0.00 0.00 34.03 2.24
139 140 2.046314 CCCCCGCACCAGTACTTG 60.046 66.667 0.00 0.00 0.00 3.16
140 141 2.746277 CCCCGCACCAGTACTTGC 60.746 66.667 9.15 9.15 35.26 4.01
144 145 3.169198 GCACCAGTACTTGCGCTC 58.831 61.111 9.73 0.00 0.00 5.03
145 146 2.730672 GCACCAGTACTTGCGCTCG 61.731 63.158 9.73 1.27 0.00 5.03
146 147 2.094659 CACCAGTACTTGCGCTCGG 61.095 63.158 9.73 0.61 0.00 4.63
147 148 3.188786 CCAGTACTTGCGCTCGGC 61.189 66.667 9.73 0.00 43.96 5.54
176 177 4.530857 CGGCCCCGCTTCTTCGAT 62.531 66.667 0.00 0.00 0.00 3.59
177 178 2.589159 GGCCCCGCTTCTTCGATC 60.589 66.667 0.00 0.00 0.00 3.69
178 179 2.501610 GCCCCGCTTCTTCGATCT 59.498 61.111 0.00 0.00 0.00 2.75
179 180 1.592939 GCCCCGCTTCTTCGATCTC 60.593 63.158 0.00 0.00 0.00 2.75
180 181 2.022240 GCCCCGCTTCTTCGATCTCT 62.022 60.000 0.00 0.00 0.00 3.10
181 182 0.031449 CCCCGCTTCTTCGATCTCTC 59.969 60.000 0.00 0.00 0.00 3.20
182 183 1.028905 CCCGCTTCTTCGATCTCTCT 58.971 55.000 0.00 0.00 0.00 3.10
183 184 1.001815 CCCGCTTCTTCGATCTCTCTC 60.002 57.143 0.00 0.00 0.00 3.20
184 185 1.333702 CCGCTTCTTCGATCTCTCTCG 60.334 57.143 0.00 0.00 39.99 4.04
185 186 1.753956 GCTTCTTCGATCTCTCTCGC 58.246 55.000 0.00 0.00 38.52 5.03
186 187 1.599419 GCTTCTTCGATCTCTCTCGCC 60.599 57.143 0.00 0.00 38.52 5.54
187 188 1.001815 CTTCTTCGATCTCTCTCGCCC 60.002 57.143 0.00 0.00 38.52 6.13
188 189 0.820074 TCTTCGATCTCTCTCGCCCC 60.820 60.000 0.00 0.00 38.52 5.80
189 190 2.123988 CTTCGATCTCTCTCGCCCCG 62.124 65.000 0.00 0.00 38.52 5.73
190 191 4.335584 CGATCTCTCTCGCCCCGC 62.336 72.222 0.00 0.00 0.00 6.13
191 192 3.984749 GATCTCTCTCGCCCCGCC 61.985 72.222 0.00 0.00 0.00 6.13
209 210 3.838271 GGTGATCTGCGGGCGAGA 61.838 66.667 0.00 0.00 0.00 4.04
210 211 2.184322 GTGATCTGCGGGCGAGAA 59.816 61.111 0.00 0.00 0.00 2.87
211 212 1.880340 GTGATCTGCGGGCGAGAAG 60.880 63.158 0.00 0.00 0.00 2.85
222 223 1.493311 GCGAGAAGCTTGTTCCACG 59.507 57.895 2.10 0.06 44.04 4.94
223 224 1.222115 GCGAGAAGCTTGTTCCACGT 61.222 55.000 2.10 0.00 44.04 4.49
224 225 0.784778 CGAGAAGCTTGTTCCACGTC 59.215 55.000 2.10 0.00 0.00 4.34
225 226 1.149148 GAGAAGCTTGTTCCACGTCC 58.851 55.000 2.10 0.00 0.00 4.79
226 227 0.468226 AGAAGCTTGTTCCACGTCCA 59.532 50.000 2.10 0.00 0.00 4.02
227 228 1.134220 AGAAGCTTGTTCCACGTCCAA 60.134 47.619 2.10 0.00 0.00 3.53
228 229 1.673920 GAAGCTTGTTCCACGTCCAAA 59.326 47.619 2.10 0.00 0.00 3.28
229 230 1.757682 AGCTTGTTCCACGTCCAAAA 58.242 45.000 0.00 0.00 0.00 2.44
230 231 2.096248 AGCTTGTTCCACGTCCAAAAA 58.904 42.857 0.00 0.00 0.00 1.94
231 232 2.159296 AGCTTGTTCCACGTCCAAAAAC 60.159 45.455 0.00 0.00 0.00 2.43
232 233 2.804647 CTTGTTCCACGTCCAAAAACC 58.195 47.619 0.00 0.00 0.00 3.27
233 234 2.131776 TGTTCCACGTCCAAAAACCT 57.868 45.000 0.00 0.00 0.00 3.50
234 235 3.278668 TGTTCCACGTCCAAAAACCTA 57.721 42.857 0.00 0.00 0.00 3.08
235 236 3.207778 TGTTCCACGTCCAAAAACCTAG 58.792 45.455 0.00 0.00 0.00 3.02
236 237 3.118334 TGTTCCACGTCCAAAAACCTAGA 60.118 43.478 0.00 0.00 0.00 2.43
237 238 4.070009 GTTCCACGTCCAAAAACCTAGAT 58.930 43.478 0.00 0.00 0.00 1.98
238 239 3.934068 TCCACGTCCAAAAACCTAGATC 58.066 45.455 0.00 0.00 0.00 2.75
239 240 2.671396 CCACGTCCAAAAACCTAGATCG 59.329 50.000 0.00 0.00 0.00 3.69
240 241 2.093783 CACGTCCAAAAACCTAGATCGC 59.906 50.000 0.00 0.00 0.00 4.58
241 242 1.664151 CGTCCAAAAACCTAGATCGCC 59.336 52.381 0.00 0.00 0.00 5.54
242 243 2.677037 CGTCCAAAAACCTAGATCGCCT 60.677 50.000 0.00 0.00 0.00 5.52
243 244 2.937149 GTCCAAAAACCTAGATCGCCTC 59.063 50.000 0.00 0.00 0.00 4.70
244 245 1.933853 CCAAAAACCTAGATCGCCTCG 59.066 52.381 0.00 0.00 0.00 4.63
245 246 1.933853 CAAAAACCTAGATCGCCTCGG 59.066 52.381 0.00 0.00 34.12 4.63
246 247 0.464452 AAAACCTAGATCGCCTCGGG 59.536 55.000 0.00 0.00 32.30 5.14
247 248 2.029307 AAACCTAGATCGCCTCGGGC 62.029 60.000 4.96 4.96 46.75 6.13
266 267 2.590092 CCGCCAGAGGGGTTTAGG 59.410 66.667 0.00 0.00 41.20 2.69
267 268 2.590092 CGCCAGAGGGGTTTAGGG 59.410 66.667 0.00 0.00 39.65 3.53
268 269 2.298661 CGCCAGAGGGGTTTAGGGT 61.299 63.158 0.00 0.00 39.65 4.34
269 270 1.848886 CGCCAGAGGGGTTTAGGGTT 61.849 60.000 0.00 0.00 39.65 4.11
270 271 0.408309 GCCAGAGGGGTTTAGGGTTT 59.592 55.000 0.00 0.00 39.65 3.27
271 272 1.891011 GCCAGAGGGGTTTAGGGTTTG 60.891 57.143 0.00 0.00 39.65 2.93
272 273 1.272480 CCAGAGGGGTTTAGGGTTTGG 60.272 57.143 0.00 0.00 0.00 3.28
273 274 1.081481 AGAGGGGTTTAGGGTTTGGG 58.919 55.000 0.00 0.00 0.00 4.12
274 275 0.040646 GAGGGGTTTAGGGTTTGGGG 59.959 60.000 0.00 0.00 0.00 4.96
275 276 1.079621 GGGGTTTAGGGTTTGGGGG 59.920 63.158 0.00 0.00 0.00 5.40
549 550 3.974222 CGTGAGCCTCATGCAGATA 57.026 52.632 0.05 0.00 44.83 1.98
602 603 7.751732 TGTAATCCAAAAGATTGAGACGAATG 58.248 34.615 0.00 0.00 45.11 2.67
632 633 7.251704 AGATTCGTACCTTAGAATGCAATTG 57.748 36.000 0.00 0.00 36.07 2.32
722 723 9.988350 CTATATAAAAGATTGCGCCGAATAAAT 57.012 29.630 4.18 0.00 0.00 1.40
738 739 7.041780 GCCGAATAAATAATAGGCGATGATGAT 60.042 37.037 0.00 0.00 33.55 2.45
931 1241 1.225983 CCACCACCACACTCCACAA 59.774 57.895 0.00 0.00 0.00 3.33
995 1327 0.449786 CGCAACACAACACACCTCAA 59.550 50.000 0.00 0.00 0.00 3.02
996 1328 1.065401 CGCAACACAACACACCTCAAT 59.935 47.619 0.00 0.00 0.00 2.57
1239 1621 7.233757 GGTACCAGGTTCATAGTCTCATAAGAT 59.766 40.741 7.15 0.00 33.08 2.40
1240 1622 7.296628 ACCAGGTTCATAGTCTCATAAGATC 57.703 40.000 0.00 0.00 33.08 2.75
1241 1623 6.841229 ACCAGGTTCATAGTCTCATAAGATCA 59.159 38.462 0.00 0.00 33.08 2.92
1242 1624 7.151308 CCAGGTTCATAGTCTCATAAGATCAC 58.849 42.308 0.00 0.00 33.08 3.06
1244 1626 7.651304 CAGGTTCATAGTCTCATAAGATCACAC 59.349 40.741 0.00 0.00 33.08 3.82
1245 1627 6.638873 GGTTCATAGTCTCATAAGATCACACG 59.361 42.308 0.00 0.00 33.08 4.49
1246 1628 7.418408 GTTCATAGTCTCATAAGATCACACGA 58.582 38.462 0.00 0.00 33.08 4.35
1247 1629 7.751768 TCATAGTCTCATAAGATCACACGAT 57.248 36.000 0.00 0.00 33.08 3.73
1292 1677 2.317609 GCGGCGTGACATGACTTGT 61.318 57.895 9.37 0.00 42.79 3.16
1294 1679 1.868997 GGCGTGACATGACTTGTGG 59.131 57.895 0.00 0.00 39.18 4.17
1499 1888 1.750399 CATGGGCCTCAAGTTCGGG 60.750 63.158 4.53 0.00 0.00 5.14
1748 2153 9.853555 TTACTATCATTTTGCAGTATTTTGGTG 57.146 29.630 0.00 0.00 0.00 4.17
1749 2154 7.895759 ACTATCATTTTGCAGTATTTTGGTGT 58.104 30.769 0.00 0.00 0.00 4.16
1756 2161 8.810652 TTTTGCAGTATTTTGGTGTAATCTTC 57.189 30.769 0.00 0.00 0.00 2.87
1768 2173 4.457949 GGTGTAATCTTCCACGTCCAAAAT 59.542 41.667 0.00 0.00 32.30 1.82
1769 2174 5.644636 GGTGTAATCTTCCACGTCCAAAATA 59.355 40.000 0.00 0.00 32.30 1.40
1821 2226 9.839817 CTATCTATTCTTCTATCCTATCGTCCA 57.160 37.037 0.00 0.00 0.00 4.02
1823 2228 8.935614 TCTATTCTTCTATCCTATCGTCCAAA 57.064 34.615 0.00 0.00 0.00 3.28
1824 2229 9.363401 TCTATTCTTCTATCCTATCGTCCAAAA 57.637 33.333 0.00 0.00 0.00 2.44
1834 2239 8.862325 ATCCTATCGTCCAAAATATAAATGCA 57.138 30.769 0.00 0.00 0.00 3.96
1835 2240 8.862325 TCCTATCGTCCAAAATATAAATGCAT 57.138 30.769 0.00 0.00 0.00 3.96
1836 2241 9.952030 TCCTATCGTCCAAAATATAAATGCATA 57.048 29.630 0.00 0.00 0.00 3.14
1945 2352 5.770685 AGGGCTAGATCCAATAAATCTCC 57.229 43.478 0.00 0.00 35.20 3.71
1955 2362 4.524714 TCCAATAAATCTCCGCCAACAAAA 59.475 37.500 0.00 0.00 0.00 2.44
1979 2386 4.640771 ATGCCAATCCAACGACCTATAT 57.359 40.909 0.00 0.00 0.00 0.86
1996 2403 4.751600 CCTATATTGCTTCAATGACGAGCA 59.248 41.667 5.59 5.59 44.03 4.26
2001 2408 1.392853 GCTTCAATGACGAGCACTCAG 59.607 52.381 2.32 0.00 36.45 3.35
2077 2496 3.985008 TGCGTACCTAATGTTATCGCAT 58.015 40.909 5.29 0.00 41.52 4.73
2082 2501 7.813627 TGCGTACCTAATGTTATCGCATAATTA 59.186 33.333 5.29 0.00 41.52 1.40
2163 2582 7.369607 TGCACGTACACATTTACTAGTTCTAA 58.630 34.615 0.00 0.00 0.00 2.10
2188 2607 8.738645 ATATAAAAGAGCGAGTTTTGGAGATT 57.261 30.769 0.00 0.00 0.00 2.40
2193 2612 2.814336 AGCGAGTTTTGGAGATTCAACC 59.186 45.455 0.00 0.00 0.00 3.77
2214 2633 1.833630 GATCTCACCCACTCATCCACA 59.166 52.381 0.00 0.00 0.00 4.17
2450 3040 8.800370 TCCAAACAGCACATAATCTTGTTATA 57.200 30.769 0.00 0.00 0.00 0.98
2451 3041 8.673711 TCCAAACAGCACATAATCTTGTTATAC 58.326 33.333 0.00 0.00 0.00 1.47
2452 3042 7.915397 CCAAACAGCACATAATCTTGTTATACC 59.085 37.037 0.00 0.00 0.00 2.73
2453 3043 8.458052 CAAACAGCACATAATCTTGTTATACCA 58.542 33.333 0.00 0.00 0.00 3.25
2454 3044 8.574251 AACAGCACATAATCTTGTTATACCAA 57.426 30.769 0.00 0.00 0.00 3.67
2455 3045 7.985476 ACAGCACATAATCTTGTTATACCAAC 58.015 34.615 0.00 0.00 0.00 3.77
2456 3046 7.067008 ACAGCACATAATCTTGTTATACCAACC 59.933 37.037 0.00 0.00 0.00 3.77
2457 3047 7.066887 CAGCACATAATCTTGTTATACCAACCA 59.933 37.037 0.00 0.00 0.00 3.67
2458 3048 7.779798 AGCACATAATCTTGTTATACCAACCAT 59.220 33.333 0.00 0.00 0.00 3.55
2516 3106 6.749923 AACAGCTTAGGATCAAATTGTCTC 57.250 37.500 0.00 0.00 0.00 3.36
2518 3108 5.188434 CAGCTTAGGATCAAATTGTCTCCA 58.812 41.667 15.71 4.03 0.00 3.86
2519 3109 5.649395 CAGCTTAGGATCAAATTGTCTCCAA 59.351 40.000 15.71 9.33 34.45 3.53
2520 3110 6.151648 CAGCTTAGGATCAAATTGTCTCCAAA 59.848 38.462 15.71 4.98 33.44 3.28
2521 3111 6.151817 AGCTTAGGATCAAATTGTCTCCAAAC 59.848 38.462 15.71 7.13 33.44 2.93
2522 3112 6.071952 GCTTAGGATCAAATTGTCTCCAAACA 60.072 38.462 15.71 0.00 33.44 2.83
2523 3113 5.972107 AGGATCAAATTGTCTCCAAACAG 57.028 39.130 15.71 0.00 33.44 3.16
2524 3114 4.219288 AGGATCAAATTGTCTCCAAACAGC 59.781 41.667 15.71 0.00 33.44 4.40
2525 3115 4.022068 GGATCAAATTGTCTCCAAACAGCA 60.022 41.667 10.80 0.00 33.44 4.41
2526 3116 4.305989 TCAAATTGTCTCCAAACAGCAC 57.694 40.909 0.00 0.00 33.44 4.40
2527 3117 3.698539 TCAAATTGTCTCCAAACAGCACA 59.301 39.130 0.00 0.00 33.44 4.57
2528 3118 4.341806 TCAAATTGTCTCCAAACAGCACAT 59.658 37.500 0.00 0.00 33.44 3.21
2529 3119 5.534278 TCAAATTGTCTCCAAACAGCACATA 59.466 36.000 0.00 0.00 33.44 2.29
2530 3120 6.040278 TCAAATTGTCTCCAAACAGCACATAA 59.960 34.615 0.00 0.00 33.44 1.90
2531 3121 6.594788 AATTGTCTCCAAACAGCACATAAT 57.405 33.333 0.00 0.00 33.44 1.28
2532 3122 5.627499 TTGTCTCCAAACAGCACATAATC 57.373 39.130 0.00 0.00 0.00 1.75
2533 3123 4.910195 TGTCTCCAAACAGCACATAATCT 58.090 39.130 0.00 0.00 0.00 2.40
2534 3124 5.316167 TGTCTCCAAACAGCACATAATCTT 58.684 37.500 0.00 0.00 0.00 2.40
2535 3125 5.181811 TGTCTCCAAACAGCACATAATCTTG 59.818 40.000 0.00 0.00 0.00 3.02
2560 3367 9.268282 TGTTACCTCTTAGAAAGTAAGATGGAT 57.732 33.333 13.01 5.11 33.61 3.41
2584 3415 5.575606 TCATCGTCCTAAAATTTCTCGTCAC 59.424 40.000 0.00 0.00 0.00 3.67
2599 3430 0.729690 GTCACGACGGTAGTACTCCC 59.270 60.000 0.00 0.00 0.00 4.30
2600 3431 0.615331 TCACGACGGTAGTACTCCCT 59.385 55.000 0.00 0.00 0.00 4.20
2601 3432 1.012841 CACGACGGTAGTACTCCCTC 58.987 60.000 0.00 0.00 0.00 4.30
2602 3433 0.107459 ACGACGGTAGTACTCCCTCC 60.107 60.000 0.00 0.00 0.00 4.30
2603 3434 1.156645 CGACGGTAGTACTCCCTCCG 61.157 65.000 19.65 19.65 45.53 4.63
2604 3435 4.972875 CGGTAGTACTCCCTCCGT 57.027 61.111 0.00 0.00 36.99 4.69
2605 3436 3.181526 CGGTAGTACTCCCTCCGTT 57.818 57.895 0.00 0.00 36.99 4.44
2606 3437 1.020437 CGGTAGTACTCCCTCCGTTC 58.980 60.000 0.00 0.00 36.99 3.95
2607 3438 1.397672 GGTAGTACTCCCTCCGTTCC 58.602 60.000 0.00 0.00 0.00 3.62
2608 3439 1.341383 GGTAGTACTCCCTCCGTTCCA 60.341 57.143 0.00 0.00 0.00 3.53
2609 3440 2.450476 GTAGTACTCCCTCCGTTCCAA 58.550 52.381 0.00 0.00 0.00 3.53
2610 3441 2.019807 AGTACTCCCTCCGTTCCAAA 57.980 50.000 0.00 0.00 0.00 3.28
2611 3442 2.332117 AGTACTCCCTCCGTTCCAAAA 58.668 47.619 0.00 0.00 0.00 2.44
2612 3443 2.910977 AGTACTCCCTCCGTTCCAAAAT 59.089 45.455 0.00 0.00 0.00 1.82
2613 3444 4.098894 AGTACTCCCTCCGTTCCAAAATA 58.901 43.478 0.00 0.00 0.00 1.40
2614 3445 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
2615 3446 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
2616 3447 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
2617 3448 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
2618 3449 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
2619 3450 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
2620 3451 3.877508 CCTCCGTTCCAAAATAGATGACC 59.122 47.826 0.00 0.00 0.00 4.02
2621 3452 3.877508 CTCCGTTCCAAAATAGATGACCC 59.122 47.826 0.00 0.00 0.00 4.46
2622 3453 3.264706 TCCGTTCCAAAATAGATGACCCA 59.735 43.478 0.00 0.00 0.00 4.51
2623 3454 4.013728 CCGTTCCAAAATAGATGACCCAA 58.986 43.478 0.00 0.00 0.00 4.12
2624 3455 4.142469 CCGTTCCAAAATAGATGACCCAAC 60.142 45.833 0.00 0.00 0.00 3.77
2625 3456 4.700213 CGTTCCAAAATAGATGACCCAACT 59.300 41.667 0.00 0.00 0.00 3.16
2626 3457 5.183140 CGTTCCAAAATAGATGACCCAACTT 59.817 40.000 0.00 0.00 0.00 2.66
2627 3458 6.294508 CGTTCCAAAATAGATGACCCAACTTT 60.295 38.462 0.00 0.00 0.00 2.66
2628 3459 6.588719 TCCAAAATAGATGACCCAACTTTG 57.411 37.500 0.00 0.00 0.00 2.77
2629 3460 6.074648 TCCAAAATAGATGACCCAACTTTGT 58.925 36.000 0.00 0.00 0.00 2.83
2630 3461 7.235079 TCCAAAATAGATGACCCAACTTTGTA 58.765 34.615 0.00 0.00 0.00 2.41
2631 3462 7.175990 TCCAAAATAGATGACCCAACTTTGTAC 59.824 37.037 0.00 0.00 0.00 2.90
2632 3463 7.176690 CCAAAATAGATGACCCAACTTTGTACT 59.823 37.037 0.00 0.00 0.00 2.73
2633 3464 9.226606 CAAAATAGATGACCCAACTTTGTACTA 57.773 33.333 0.00 0.00 0.00 1.82
2634 3465 9.802039 AAAATAGATGACCCAACTTTGTACTAA 57.198 29.630 0.00 0.00 0.00 2.24
2635 3466 8.788325 AATAGATGACCCAACTTTGTACTAAC 57.212 34.615 0.00 0.00 0.00 2.34
2636 3467 6.435292 AGATGACCCAACTTTGTACTAACT 57.565 37.500 0.00 0.00 0.00 2.24
2637 3468 6.838382 AGATGACCCAACTTTGTACTAACTT 58.162 36.000 0.00 0.00 0.00 2.66
2638 3469 7.287810 AGATGACCCAACTTTGTACTAACTTT 58.712 34.615 0.00 0.00 0.00 2.66
2639 3470 6.687081 TGACCCAACTTTGTACTAACTTTG 57.313 37.500 0.00 0.00 0.00 2.77
2640 3471 6.181908 TGACCCAACTTTGTACTAACTTTGT 58.818 36.000 0.00 0.00 0.00 2.83
2641 3472 7.337167 TGACCCAACTTTGTACTAACTTTGTA 58.663 34.615 0.00 0.00 0.00 2.41
2642 3473 7.280652 TGACCCAACTTTGTACTAACTTTGTAC 59.719 37.037 6.58 6.58 40.27 2.90
2643 3474 7.341030 ACCCAACTTTGTACTAACTTTGTACT 58.659 34.615 12.73 0.00 40.44 2.73
2644 3475 8.485392 ACCCAACTTTGTACTAACTTTGTACTA 58.515 33.333 12.73 4.86 40.44 1.82
2645 3476 9.328845 CCCAACTTTGTACTAACTTTGTACTAA 57.671 33.333 12.73 10.75 40.44 2.24
2680 3511 9.746711 CAAAGTTGAGTCATCTATTTTAGAACG 57.253 33.333 4.14 0.00 38.50 3.95
2681 3512 8.480643 AAGTTGAGTCATCTATTTTAGAACGG 57.519 34.615 4.14 0.00 38.50 4.44
2682 3513 7.837863 AGTTGAGTCATCTATTTTAGAACGGA 58.162 34.615 1.70 0.00 38.50 4.69
2683 3514 7.976734 AGTTGAGTCATCTATTTTAGAACGGAG 59.023 37.037 1.70 0.00 38.50 4.63
2684 3515 6.806751 TGAGTCATCTATTTTAGAACGGAGG 58.193 40.000 0.00 0.00 38.50 4.30
2685 3516 6.163135 AGTCATCTATTTTAGAACGGAGGG 57.837 41.667 0.00 0.00 38.50 4.30
2699 3562 2.233186 ACGGAGGGAGTAGTTGCTTAAC 59.767 50.000 0.00 0.00 0.00 2.01
2700 3563 2.496470 CGGAGGGAGTAGTTGCTTAACT 59.504 50.000 0.00 0.00 36.82 2.24
2953 3821 1.131693 GGGGCGTCAATTTCGGTAAAG 59.868 52.381 0.00 0.00 0.00 1.85
2995 3884 6.624352 TCAGCTACATTATTCAGCATTTCC 57.376 37.500 0.00 0.00 37.78 3.13
3002 3891 0.099436 ATTCAGCATTTCCGAAGCGC 59.901 50.000 0.00 0.00 0.00 5.92
3021 3928 3.794028 GCGCATTGTAGTCTAGAACTGAG 59.206 47.826 0.30 0.00 39.11 3.35
3042 3949 6.003326 TGAGAATCTCAGCAAATGGTAACAA 58.997 36.000 9.18 0.00 42.98 2.83
3044 3951 7.308770 TGAGAATCTCAGCAAATGGTAACAAAG 60.309 37.037 9.18 0.00 42.98 2.77
3133 4040 0.031585 TCGTGACCGTTTCAGAGGTG 59.968 55.000 0.00 0.00 41.51 4.00
3176 4122 8.363390 TCCATTCTAGAATTAGCTACATCACAG 58.637 37.037 15.49 0.00 0.00 3.66
3177 4123 8.147058 CCATTCTAGAATTAGCTACATCACAGT 58.853 37.037 15.49 0.00 0.00 3.55
3178 4124 9.539825 CATTCTAGAATTAGCTACATCACAGTT 57.460 33.333 15.49 0.00 0.00 3.16
3179 4125 8.932945 TTCTAGAATTAGCTACATCACAGTTG 57.067 34.615 0.00 0.00 0.00 3.16
3180 4126 7.492524 TCTAGAATTAGCTACATCACAGTTGG 58.507 38.462 0.00 0.00 0.00 3.77
3181 4127 6.054860 AGAATTAGCTACATCACAGTTGGT 57.945 37.500 0.00 0.00 0.00 3.67
3198 4144 8.862325 ACAGTTGGTGATCTGTATTATTCAAA 57.138 30.769 0.00 0.00 42.13 2.69
3199 4145 9.295825 ACAGTTGGTGATCTGTATTATTCAAAA 57.704 29.630 0.00 0.00 42.13 2.44
3464 5655 7.068103 ACAGATACTCCTCACACAATTCTAGAG 59.932 40.741 0.00 0.00 0.00 2.43
3465 5656 7.284261 CAGATACTCCTCACACAATTCTAGAGA 59.716 40.741 0.00 0.00 0.00 3.10
3466 5657 5.913137 ACTCCTCACACAATTCTAGAGAG 57.087 43.478 0.00 0.00 0.00 3.20
3523 5726 8.631480 ATTTACTTTATCTTCCTTTTCACCGT 57.369 30.769 0.00 0.00 0.00 4.83
3525 5728 5.374071 ACTTTATCTTCCTTTTCACCGTGT 58.626 37.500 0.00 0.00 0.00 4.49
3566 6113 1.672881 GCTGCTGCGAATAAGATTGGT 59.327 47.619 0.00 0.00 0.00 3.67
3613 6160 2.355108 GGCCAGACTTAGACATGCTTCA 60.355 50.000 0.00 0.00 0.00 3.02
3620 6167 6.006449 AGACTTAGACATGCTTCAATTTGGT 58.994 36.000 0.00 0.00 0.00 3.67
3649 6196 2.814336 CTGATGCAGGTGATCATCCATG 59.186 50.000 1.24 0.00 38.57 3.66
3660 6211 4.823442 GTGATCATCCATGCCATAACTTCA 59.177 41.667 0.00 0.00 0.00 3.02
3712 6269 5.421056 TCGGTTCTACTTTCCATGTACATCT 59.579 40.000 5.07 0.00 0.00 2.90
3713 6270 5.520288 CGGTTCTACTTTCCATGTACATCTG 59.480 44.000 5.07 0.18 0.00 2.90
3714 6271 6.627287 CGGTTCTACTTTCCATGTACATCTGA 60.627 42.308 5.07 2.86 0.00 3.27
3715 6272 7.275920 GGTTCTACTTTCCATGTACATCTGAT 58.724 38.462 5.07 0.00 0.00 2.90
3716 6273 7.770897 GGTTCTACTTTCCATGTACATCTGATT 59.229 37.037 5.07 0.00 0.00 2.57
4046 7628 9.747898 AAACAACATGGAGGTGAACTAAATATA 57.252 29.630 0.00 0.00 36.95 0.86
4056 7638 9.668497 GAGGTGAACTAAATATAAGTTGGAGTT 57.332 33.333 7.84 0.00 37.31 3.01
4104 7686 1.045407 ACAACGAGCTAACCTGTGGA 58.955 50.000 0.00 0.00 0.00 4.02
4224 7807 1.560505 ATGGTGGAATGGTTCTTGGC 58.439 50.000 0.00 0.00 0.00 4.52
4355 7938 5.585844 CCAAAGCAAAACTTCTTCCAACATT 59.414 36.000 0.00 0.00 37.75 2.71
4383 7966 2.221517 GGCATGTGACAAAACAATGCAC 59.778 45.455 8.59 0.00 36.83 4.57
4653 8239 3.318275 TCCTGATAAGAGAAACGGGATCG 59.682 47.826 0.00 0.00 43.02 3.69
4663 8249 3.700038 AGAAACGGGATCGATGTAGAGTT 59.300 43.478 0.54 0.00 40.11 3.01
4667 8253 3.147629 CGGGATCGATGTAGAGTTAGGT 58.852 50.000 0.54 0.00 39.00 3.08
5010 9110 2.009051 CACGAGCATGGACAGCAATTA 58.991 47.619 0.00 0.00 0.00 1.40
5013 9113 2.938451 CGAGCATGGACAGCAATTAGAA 59.062 45.455 0.00 0.00 0.00 2.10
5182 9283 2.852495 ATCACTGTAAGCGTGCCGGG 62.852 60.000 2.18 0.00 37.60 5.73
5365 9482 2.624838 ACCTGTTCAACTTGGAAGCATG 59.375 45.455 7.07 0.00 0.00 4.06
5394 9511 8.153221 TGATTGGGGTGTAAATTCTCTAGTTA 57.847 34.615 0.00 0.00 0.00 2.24
5610 13200 1.314730 GAACCTTGAAAGCGAACCCA 58.685 50.000 0.00 0.00 0.00 4.51
5623 13213 7.721842 TGAAAGCGAACCCATAAAATATCCATA 59.278 33.333 0.00 0.00 0.00 2.74
5701 13291 6.788598 TTTTATTATGCAATTCTGAGGCCA 57.211 33.333 5.01 0.00 0.00 5.36
5702 13292 6.395426 TTTATTATGCAATTCTGAGGCCAG 57.605 37.500 5.01 0.00 41.74 4.85
5703 13293 3.370840 TTATGCAATTCTGAGGCCAGT 57.629 42.857 5.01 0.00 41.16 4.00
5704 13294 1.760192 ATGCAATTCTGAGGCCAGTC 58.240 50.000 5.01 0.00 41.16 3.51
5705 13295 0.674581 TGCAATTCTGAGGCCAGTCG 60.675 55.000 5.01 0.00 41.16 4.18
5706 13296 1.986575 GCAATTCTGAGGCCAGTCGC 61.987 60.000 5.01 0.00 41.16 5.19
5747 13337 3.319122 ACCATCCAAGAAAGCACAGAAAC 59.681 43.478 0.00 0.00 0.00 2.78
5748 13338 3.318839 CCATCCAAGAAAGCACAGAAACA 59.681 43.478 0.00 0.00 0.00 2.83
5749 13339 4.202141 CCATCCAAGAAAGCACAGAAACAA 60.202 41.667 0.00 0.00 0.00 2.83
5750 13340 5.350633 CATCCAAGAAAGCACAGAAACAAA 58.649 37.500 0.00 0.00 0.00 2.83
5751 13341 5.398603 TCCAAGAAAGCACAGAAACAAAA 57.601 34.783 0.00 0.00 0.00 2.44
5752 13342 5.788450 TCCAAGAAAGCACAGAAACAAAAA 58.212 33.333 0.00 0.00 0.00 1.94
5838 13428 1.202952 AGGCGGTTACACCCAATCAAA 60.203 47.619 0.00 0.00 33.75 2.69
5841 13431 3.444388 GGCGGTTACACCCAATCAAATTA 59.556 43.478 0.00 0.00 33.75 1.40
5842 13432 4.098807 GGCGGTTACACCCAATCAAATTAT 59.901 41.667 0.00 0.00 33.75 1.28
5892 13482 5.369699 AGATATTACCTGCACCATACCAAGT 59.630 40.000 0.00 0.00 0.00 3.16
5893 13483 3.343941 TTACCTGCACCATACCAAGTC 57.656 47.619 0.00 0.00 0.00 3.01
5894 13484 1.064003 ACCTGCACCATACCAAGTCA 58.936 50.000 0.00 0.00 0.00 3.41
5895 13485 1.271379 ACCTGCACCATACCAAGTCAC 60.271 52.381 0.00 0.00 0.00 3.67
5896 13486 1.271325 CCTGCACCATACCAAGTCACA 60.271 52.381 0.00 0.00 0.00 3.58
5897 13487 2.079158 CTGCACCATACCAAGTCACAG 58.921 52.381 0.00 0.00 0.00 3.66
5898 13488 0.804989 GCACCATACCAAGTCACAGC 59.195 55.000 0.00 0.00 0.00 4.40
5900 13490 1.003580 CACCATACCAAGTCACAGCCT 59.996 52.381 0.00 0.00 0.00 4.58
5901 13491 2.236146 CACCATACCAAGTCACAGCCTA 59.764 50.000 0.00 0.00 0.00 3.93
5902 13492 3.115390 ACCATACCAAGTCACAGCCTAT 58.885 45.455 0.00 0.00 0.00 2.57
5903 13493 4.100963 CACCATACCAAGTCACAGCCTATA 59.899 45.833 0.00 0.00 0.00 1.31
5940 13530 5.924475 ACTACCAAAGTGATGAAACTTCG 57.076 39.130 0.00 0.00 39.48 3.79
5943 13533 3.003689 ACCAAAGTGATGAAACTTCGCAG 59.996 43.478 0.00 0.00 39.48 5.18
5970 13560 3.483808 TGTTGATGTTGCTACTGACCA 57.516 42.857 0.00 0.00 0.00 4.02
5972 13562 5.159273 TGTTGATGTTGCTACTGACCATA 57.841 39.130 0.00 0.00 0.00 2.74
5973 13563 5.555966 TGTTGATGTTGCTACTGACCATAA 58.444 37.500 0.00 0.00 0.00 1.90
5974 13564 6.179756 TGTTGATGTTGCTACTGACCATAAT 58.820 36.000 0.00 0.00 0.00 1.28
5977 13567 6.413892 TGATGTTGCTACTGACCATAATCAA 58.586 36.000 0.00 0.00 0.00 2.57
5979 13569 7.557358 TGATGTTGCTACTGACCATAATCAATT 59.443 33.333 0.00 0.00 0.00 2.32
5980 13570 7.701539 TGTTGCTACTGACCATAATCAATTT 57.298 32.000 0.00 0.00 0.00 1.82
5981 13571 7.761409 TGTTGCTACTGACCATAATCAATTTC 58.239 34.615 0.00 0.00 0.00 2.17
5982 13572 6.942532 TGCTACTGACCATAATCAATTTCC 57.057 37.500 0.00 0.00 0.00 3.13
5985 13576 5.110814 ACTGACCATAATCAATTTCCGGA 57.889 39.130 0.00 0.00 0.00 5.14
5997 13588 2.333688 TTTCCGGACAACACATCACA 57.666 45.000 1.83 0.00 0.00 3.58
6009 13604 1.277273 CACATCACAGGCCTTGAGAGA 59.723 52.381 18.43 7.31 29.74 3.10
6039 13635 3.230134 ACTTGCCATTGTTAAGCTTCCA 58.770 40.909 0.00 0.00 0.00 3.53
6198 13795 7.280356 AGGTATAGCAAGTTTACCGATGAAAT 58.720 34.615 4.48 0.00 40.28 2.17
6259 13888 3.117284 AGAAGCAACCCCTTTCCAAAGTA 60.117 43.478 0.00 0.00 34.20 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.668101 ATCGAGTTGAGAGCGGTCCC 61.668 60.000 11.73 0.00 0.00 4.46
1 2 0.248702 GATCGAGTTGAGAGCGGTCC 60.249 60.000 11.73 3.52 0.00 4.46
3 4 1.066303 GATGATCGAGTTGAGAGCGGT 59.934 52.381 0.00 0.00 0.00 5.68
4 5 1.764851 GATGATCGAGTTGAGAGCGG 58.235 55.000 0.00 0.00 0.00 5.52
5 6 1.003438 TCGATGATCGAGTTGAGAGCG 60.003 52.381 14.25 0.00 44.82 5.03
6 7 2.765108 TCGATGATCGAGTTGAGAGC 57.235 50.000 14.25 0.00 44.82 4.09
16 17 1.882623 TCCTCTGGTGATCGATGATCG 59.117 52.381 8.83 8.83 41.51 3.69
17 18 2.890311 ACTCCTCTGGTGATCGATGATC 59.110 50.000 0.54 0.00 39.31 2.92
18 19 2.956132 ACTCCTCTGGTGATCGATGAT 58.044 47.619 0.54 0.00 0.00 2.45
19 20 2.428530 CAACTCCTCTGGTGATCGATGA 59.571 50.000 0.54 0.00 0.00 2.92
20 21 2.819115 CAACTCCTCTGGTGATCGATG 58.181 52.381 0.54 0.00 0.00 3.84
21 22 1.137872 GCAACTCCTCTGGTGATCGAT 59.862 52.381 0.00 0.00 0.00 3.59
22 23 0.532573 GCAACTCCTCTGGTGATCGA 59.467 55.000 0.00 0.00 0.00 3.59
23 24 0.534412 AGCAACTCCTCTGGTGATCG 59.466 55.000 0.00 0.00 0.00 3.69
24 25 2.235898 AGAAGCAACTCCTCTGGTGATC 59.764 50.000 0.00 0.00 0.00 2.92
25 26 2.264455 AGAAGCAACTCCTCTGGTGAT 58.736 47.619 0.00 0.00 0.00 3.06
26 27 1.722034 AGAAGCAACTCCTCTGGTGA 58.278 50.000 0.00 0.00 0.00 4.02
27 28 2.421619 GAAGAAGCAACTCCTCTGGTG 58.578 52.381 0.00 0.00 0.00 4.17
28 29 1.349357 GGAAGAAGCAACTCCTCTGGT 59.651 52.381 0.00 0.00 0.00 4.00
29 30 1.627834 AGGAAGAAGCAACTCCTCTGG 59.372 52.381 0.00 0.00 0.00 3.86
30 31 2.301296 TCAGGAAGAAGCAACTCCTCTG 59.699 50.000 0.00 0.00 0.00 3.35
31 32 2.566724 CTCAGGAAGAAGCAACTCCTCT 59.433 50.000 0.00 0.00 0.00 3.69
32 33 2.564947 TCTCAGGAAGAAGCAACTCCTC 59.435 50.000 0.00 0.00 0.00 3.71
33 34 2.566724 CTCTCAGGAAGAAGCAACTCCT 59.433 50.000 0.00 0.00 32.23 3.69
34 35 2.564947 TCTCTCAGGAAGAAGCAACTCC 59.435 50.000 0.00 0.00 32.23 3.85
35 36 3.951775 TCTCTCAGGAAGAAGCAACTC 57.048 47.619 0.00 0.00 32.23 3.01
36 37 5.070313 GGATATCTCTCAGGAAGAAGCAACT 59.930 44.000 2.05 0.00 32.23 3.16
37 38 5.163364 TGGATATCTCTCAGGAAGAAGCAAC 60.163 44.000 2.05 0.00 32.23 4.17
38 39 4.964897 TGGATATCTCTCAGGAAGAAGCAA 59.035 41.667 2.05 0.00 32.23 3.91
39 40 4.550669 TGGATATCTCTCAGGAAGAAGCA 58.449 43.478 2.05 0.00 32.23 3.91
40 41 5.543507 TTGGATATCTCTCAGGAAGAAGC 57.456 43.478 2.05 0.00 32.23 3.86
41 42 7.041235 GCAAATTGGATATCTCTCAGGAAGAAG 60.041 40.741 2.05 0.00 32.23 2.85
42 43 6.769822 GCAAATTGGATATCTCTCAGGAAGAA 59.230 38.462 2.05 0.00 32.23 2.52
43 44 6.294473 GCAAATTGGATATCTCTCAGGAAGA 58.706 40.000 2.05 0.00 0.00 2.87
44 45 5.472820 GGCAAATTGGATATCTCTCAGGAAG 59.527 44.000 2.05 0.00 0.00 3.46
45 46 5.380043 GGCAAATTGGATATCTCTCAGGAA 58.620 41.667 2.05 0.00 0.00 3.36
46 47 4.202503 GGGCAAATTGGATATCTCTCAGGA 60.203 45.833 2.05 0.00 0.00 3.86
47 48 4.077822 GGGCAAATTGGATATCTCTCAGG 58.922 47.826 2.05 0.00 0.00 3.86
48 49 4.722220 TGGGCAAATTGGATATCTCTCAG 58.278 43.478 2.05 0.00 0.00 3.35
49 50 4.413189 TCTGGGCAAATTGGATATCTCTCA 59.587 41.667 2.05 0.00 0.00 3.27
50 51 4.978099 TCTGGGCAAATTGGATATCTCTC 58.022 43.478 2.05 0.00 0.00 3.20
51 52 4.749166 GCTCTGGGCAAATTGGATATCTCT 60.749 45.833 2.05 0.00 41.35 3.10
52 53 3.505293 GCTCTGGGCAAATTGGATATCTC 59.495 47.826 2.05 0.00 41.35 2.75
53 54 3.494332 GCTCTGGGCAAATTGGATATCT 58.506 45.455 2.05 0.00 41.35 1.98
54 55 2.560105 GGCTCTGGGCAAATTGGATATC 59.440 50.000 0.21 0.00 44.01 1.63
55 56 2.178544 AGGCTCTGGGCAAATTGGATAT 59.821 45.455 0.21 0.00 44.01 1.63
56 57 1.570501 AGGCTCTGGGCAAATTGGATA 59.429 47.619 0.21 0.00 44.01 2.59
57 58 0.337428 AGGCTCTGGGCAAATTGGAT 59.663 50.000 0.21 0.00 44.01 3.41
58 59 0.323725 GAGGCTCTGGGCAAATTGGA 60.324 55.000 7.40 0.00 44.01 3.53
59 60 1.325476 GGAGGCTCTGGGCAAATTGG 61.325 60.000 15.23 0.00 44.01 3.16
60 61 0.324091 AGGAGGCTCTGGGCAAATTG 60.324 55.000 15.23 0.00 44.01 2.32
61 62 0.033699 GAGGAGGCTCTGGGCAAATT 60.034 55.000 15.23 0.00 44.01 1.82
62 63 0.918310 AGAGGAGGCTCTGGGCAAAT 60.918 55.000 15.23 0.00 44.01 2.32
63 64 0.252696 TAGAGGAGGCTCTGGGCAAA 60.253 55.000 15.23 0.00 44.01 3.68
64 65 0.689080 CTAGAGGAGGCTCTGGGCAA 60.689 60.000 15.23 0.00 44.01 4.52
65 66 1.075674 CTAGAGGAGGCTCTGGGCA 60.076 63.158 15.23 0.00 44.01 5.36
66 67 0.689412 AACTAGAGGAGGCTCTGGGC 60.689 60.000 15.23 0.00 36.44 5.36
67 68 1.760029 GAAACTAGAGGAGGCTCTGGG 59.240 57.143 15.23 3.54 36.44 4.45
68 69 1.760029 GGAAACTAGAGGAGGCTCTGG 59.240 57.143 15.23 0.00 37.85 3.86
69 70 1.407258 CGGAAACTAGAGGAGGCTCTG 59.593 57.143 15.23 2.85 35.09 3.35
70 71 1.770294 CGGAAACTAGAGGAGGCTCT 58.230 55.000 15.23 0.00 37.48 4.09
71 72 0.103390 GCGGAAACTAGAGGAGGCTC 59.897 60.000 5.78 5.78 0.00 4.70
72 73 1.331399 GGCGGAAACTAGAGGAGGCT 61.331 60.000 0.00 0.00 0.00 4.58
73 74 1.144276 GGCGGAAACTAGAGGAGGC 59.856 63.158 0.00 0.00 0.00 4.70
74 75 1.035932 TCGGCGGAAACTAGAGGAGG 61.036 60.000 7.21 0.00 0.00 4.30
75 76 0.382515 CTCGGCGGAAACTAGAGGAG 59.617 60.000 7.21 0.00 0.00 3.69
76 77 1.664321 GCTCGGCGGAAACTAGAGGA 61.664 60.000 7.21 0.00 0.00 3.71
77 78 1.227002 GCTCGGCGGAAACTAGAGG 60.227 63.158 7.21 0.00 0.00 3.69
78 79 4.403976 GCTCGGCGGAAACTAGAG 57.596 61.111 7.21 0.00 0.00 2.43
121 122 4.029809 AAGTACTGGTGCGGGGGC 62.030 66.667 0.00 0.00 0.00 5.80
122 123 2.046314 CAAGTACTGGTGCGGGGG 60.046 66.667 0.00 0.00 0.00 5.40
123 124 2.746277 GCAAGTACTGGTGCGGGG 60.746 66.667 3.87 0.00 0.00 5.73
127 128 2.730672 CGAGCGCAAGTACTGGTGC 61.731 63.158 25.47 25.47 40.69 5.01
128 129 2.094659 CCGAGCGCAAGTACTGGTG 61.095 63.158 11.47 6.44 41.68 4.17
129 130 2.261671 CCGAGCGCAAGTACTGGT 59.738 61.111 11.47 0.00 41.68 4.00
130 131 3.188786 GCCGAGCGCAAGTACTGG 61.189 66.667 11.47 0.00 41.68 4.00
159 160 4.530857 ATCGAAGAAGCGGGGCCG 62.531 66.667 0.00 0.00 43.58 6.13
160 161 2.589159 GATCGAAGAAGCGGGGCC 60.589 66.667 0.00 0.00 43.58 5.80
161 162 1.592939 GAGATCGAAGAAGCGGGGC 60.593 63.158 0.00 0.00 43.58 5.80
162 163 0.031449 GAGAGATCGAAGAAGCGGGG 59.969 60.000 0.00 0.00 43.58 5.73
163 164 1.001815 GAGAGAGATCGAAGAAGCGGG 60.002 57.143 0.00 0.00 43.58 6.13
164 165 1.333702 CGAGAGAGATCGAAGAAGCGG 60.334 57.143 0.00 0.00 45.56 5.52
165 166 1.919839 GCGAGAGAGATCGAAGAAGCG 60.920 57.143 0.00 0.00 45.56 4.68
166 167 1.599419 GGCGAGAGAGATCGAAGAAGC 60.599 57.143 0.00 0.00 45.56 3.86
167 168 1.001815 GGGCGAGAGAGATCGAAGAAG 60.002 57.143 0.00 0.00 45.56 2.85
168 169 1.025812 GGGCGAGAGAGATCGAAGAA 58.974 55.000 0.00 0.00 45.56 2.52
169 170 0.820074 GGGGCGAGAGAGATCGAAGA 60.820 60.000 0.00 0.00 45.56 2.87
170 171 1.657556 GGGGCGAGAGAGATCGAAG 59.342 63.158 0.00 0.00 45.56 3.79
171 172 2.187493 CGGGGCGAGAGAGATCGAA 61.187 63.158 0.00 0.00 45.56 3.71
172 173 2.592001 CGGGGCGAGAGAGATCGA 60.592 66.667 0.00 0.00 45.56 3.59
173 174 4.335584 GCGGGGCGAGAGAGATCG 62.336 72.222 0.00 0.00 45.48 3.69
174 175 3.984749 GGCGGGGCGAGAGAGATC 61.985 72.222 0.00 0.00 0.00 2.75
192 193 3.371097 TTCTCGCCCGCAGATCACC 62.371 63.158 0.00 0.00 0.00 4.02
193 194 1.880340 CTTCTCGCCCGCAGATCAC 60.880 63.158 0.00 0.00 0.00 3.06
194 195 2.496341 CTTCTCGCCCGCAGATCA 59.504 61.111 0.00 0.00 0.00 2.92
195 196 2.914777 AAGCTTCTCGCCCGCAGATC 62.915 60.000 0.00 0.00 40.39 2.75
196 197 3.023949 AAGCTTCTCGCCCGCAGAT 62.024 57.895 0.00 0.00 40.39 2.90
197 198 3.695606 AAGCTTCTCGCCCGCAGA 61.696 61.111 0.00 0.00 40.39 4.26
198 199 3.494336 CAAGCTTCTCGCCCGCAG 61.494 66.667 0.00 0.00 40.39 5.18
199 200 3.825160 AACAAGCTTCTCGCCCGCA 62.825 57.895 0.00 0.00 40.39 5.69
200 201 3.028366 GAACAAGCTTCTCGCCCGC 62.028 63.158 0.00 0.00 40.39 6.13
201 202 2.391389 GGAACAAGCTTCTCGCCCG 61.391 63.158 0.00 0.00 40.39 6.13
202 203 1.302511 TGGAACAAGCTTCTCGCCC 60.303 57.895 0.00 0.00 40.39 6.13
203 204 1.869690 GTGGAACAAGCTTCTCGCC 59.130 57.895 0.00 0.00 44.16 5.54
204 205 1.222115 ACGTGGAACAAGCTTCTCGC 61.222 55.000 0.00 0.00 44.16 5.03
205 206 0.784778 GACGTGGAACAAGCTTCTCG 59.215 55.000 0.00 0.59 44.16 4.04
206 207 1.149148 GGACGTGGAACAAGCTTCTC 58.851 55.000 0.00 0.00 44.16 2.87
207 208 0.468226 TGGACGTGGAACAAGCTTCT 59.532 50.000 0.00 0.00 44.16 2.85
208 209 1.305201 TTGGACGTGGAACAAGCTTC 58.695 50.000 0.00 0.00 44.16 3.86
209 210 1.757682 TTTGGACGTGGAACAAGCTT 58.242 45.000 0.00 0.00 44.16 3.74
210 211 1.757682 TTTTGGACGTGGAACAAGCT 58.242 45.000 0.00 0.00 44.16 3.74
211 212 2.190161 GTTTTTGGACGTGGAACAAGC 58.810 47.619 0.00 0.00 44.16 4.01
212 213 2.425668 AGGTTTTTGGACGTGGAACAAG 59.574 45.455 0.00 0.00 44.16 3.16
213 214 2.448453 AGGTTTTTGGACGTGGAACAA 58.552 42.857 0.00 0.00 44.16 2.83
214 215 2.131776 AGGTTTTTGGACGTGGAACA 57.868 45.000 0.00 0.00 35.74 3.18
215 216 3.469739 TCTAGGTTTTTGGACGTGGAAC 58.530 45.455 0.00 0.00 0.00 3.62
216 217 3.842007 TCTAGGTTTTTGGACGTGGAA 57.158 42.857 0.00 0.00 0.00 3.53
217 218 3.615592 CGATCTAGGTTTTTGGACGTGGA 60.616 47.826 0.00 0.00 31.19 4.02
218 219 2.671396 CGATCTAGGTTTTTGGACGTGG 59.329 50.000 0.00 0.00 0.00 4.94
219 220 2.093783 GCGATCTAGGTTTTTGGACGTG 59.906 50.000 0.00 0.00 0.00 4.49
220 221 2.344025 GCGATCTAGGTTTTTGGACGT 58.656 47.619 0.00 0.00 0.00 4.34
221 222 1.664151 GGCGATCTAGGTTTTTGGACG 59.336 52.381 0.00 0.00 0.00 4.79
222 223 2.937149 GAGGCGATCTAGGTTTTTGGAC 59.063 50.000 0.00 0.00 0.00 4.02
223 224 2.418197 CGAGGCGATCTAGGTTTTTGGA 60.418 50.000 0.00 0.00 0.00 3.53
224 225 1.933853 CGAGGCGATCTAGGTTTTTGG 59.066 52.381 0.00 0.00 0.00 3.28
225 226 1.933853 CCGAGGCGATCTAGGTTTTTG 59.066 52.381 0.00 0.00 34.10 2.44
226 227 1.134491 CCCGAGGCGATCTAGGTTTTT 60.134 52.381 0.00 0.00 36.64 1.94
227 228 0.464452 CCCGAGGCGATCTAGGTTTT 59.536 55.000 0.00 0.00 36.64 2.43
228 229 2.029307 GCCCGAGGCGATCTAGGTTT 62.029 60.000 0.00 0.00 39.62 3.27
229 230 2.499827 GCCCGAGGCGATCTAGGTT 61.500 63.158 0.00 0.00 39.62 3.50
230 231 2.913060 GCCCGAGGCGATCTAGGT 60.913 66.667 0.00 0.00 39.62 3.08
247 248 4.090588 TAAACCCCTCTGGCGGCG 62.091 66.667 0.51 0.51 37.83 6.46
248 249 2.124695 CTAAACCCCTCTGGCGGC 60.125 66.667 0.00 0.00 37.83 6.53
249 250 2.590092 CCTAAACCCCTCTGGCGG 59.410 66.667 0.00 0.00 37.83 6.13
250 251 1.848886 AACCCTAAACCCCTCTGGCG 61.849 60.000 0.00 0.00 37.83 5.69
251 252 0.408309 AAACCCTAAACCCCTCTGGC 59.592 55.000 0.00 0.00 37.83 4.85
252 253 1.272480 CCAAACCCTAAACCCCTCTGG 60.272 57.143 0.00 0.00 41.37 3.86
253 254 1.272480 CCCAAACCCTAAACCCCTCTG 60.272 57.143 0.00 0.00 0.00 3.35
254 255 1.081481 CCCAAACCCTAAACCCCTCT 58.919 55.000 0.00 0.00 0.00 3.69
255 256 0.040646 CCCCAAACCCTAAACCCCTC 59.959 60.000 0.00 0.00 0.00 4.30
256 257 1.448814 CCCCCAAACCCTAAACCCCT 61.449 60.000 0.00 0.00 0.00 4.79
257 258 1.079621 CCCCCAAACCCTAAACCCC 59.920 63.158 0.00 0.00 0.00 4.95
258 259 4.878987 CCCCCAAACCCTAAACCC 57.121 61.111 0.00 0.00 0.00 4.11
512 513 0.107410 GCCCAACATGGATACGACCA 60.107 55.000 0.00 0.00 40.96 4.02
513 514 1.157870 CGCCCAACATGGATACGACC 61.158 60.000 0.00 0.00 40.96 4.79
543 544 8.786898 TGTGGAATTTAATAGCAATCTATCTGC 58.213 33.333 0.00 0.00 40.24 4.26
602 603 9.042008 TGCATTCTAAGGTACGAATCTATTTTC 57.958 33.333 0.00 0.00 0.00 2.29
612 613 5.353123 GGTTCAATTGCATTCTAAGGTACGA 59.647 40.000 0.00 0.00 0.00 3.43
693 694 6.939551 TCGGCGCAATCTTTTATATAGTAC 57.060 37.500 10.83 0.00 0.00 2.73
696 697 9.988350 ATTTATTCGGCGCAATCTTTTATATAG 57.012 29.630 10.83 0.00 0.00 1.31
722 723 7.013274 TCGTATCATCATCATCATCGCCTATTA 59.987 37.037 0.00 0.00 0.00 0.98
972 1282 1.714899 GGTGTGTTGTGTTGCGAGCT 61.715 55.000 0.00 0.00 0.00 4.09
980 1290 3.011566 TGGAATTGAGGTGTGTTGTGT 57.988 42.857 0.00 0.00 0.00 3.72
1239 1621 2.168326 ATGCAGTGTGAATCGTGTGA 57.832 45.000 0.00 0.00 0.00 3.58
1240 1622 2.975410 AATGCAGTGTGAATCGTGTG 57.025 45.000 0.00 0.00 0.00 3.82
1241 1623 3.141398 AGAAATGCAGTGTGAATCGTGT 58.859 40.909 0.00 0.00 0.00 4.49
1242 1624 3.818961 AGAAATGCAGTGTGAATCGTG 57.181 42.857 0.00 0.00 0.00 4.35
1244 1626 4.391216 AGAGAAGAAATGCAGTGTGAATCG 59.609 41.667 0.00 0.00 0.00 3.34
1245 1627 5.629097 CAGAGAAGAAATGCAGTGTGAATC 58.371 41.667 0.00 0.00 0.00 2.52
1246 1628 4.082895 GCAGAGAAGAAATGCAGTGTGAAT 60.083 41.667 0.00 0.00 39.75 2.57
1247 1629 3.251729 GCAGAGAAGAAATGCAGTGTGAA 59.748 43.478 0.00 0.00 39.75 3.18
1499 1888 0.830648 TCCCGTTCATGAGGTGGATC 59.169 55.000 10.55 0.00 0.00 3.36
1723 2128 9.019656 ACACCAAAATACTGCAAAATGATAGTA 57.980 29.630 0.00 0.00 0.00 1.82
1724 2129 7.895759 ACACCAAAATACTGCAAAATGATAGT 58.104 30.769 0.00 0.00 0.00 2.12
1725 2130 9.853555 TTACACCAAAATACTGCAAAATGATAG 57.146 29.630 0.00 0.00 0.00 2.08
1756 2161 9.474920 AAATATGCATTTATATTTTGGACGTGG 57.525 29.630 3.54 0.00 39.14 4.94
1795 2200 9.839817 TGGACGATAGGATAGAAGAATAGATAG 57.160 37.037 0.00 0.00 43.77 2.08
1798 2203 8.935614 TTTGGACGATAGGATAGAAGAATAGA 57.064 34.615 0.00 0.00 43.77 1.98
1808 2213 9.952030 TGCATTTATATTTTGGACGATAGGATA 57.048 29.630 0.00 0.00 43.77 2.59
1809 2214 8.862325 TGCATTTATATTTTGGACGATAGGAT 57.138 30.769 0.00 0.00 43.77 3.24
1810 2215 8.862325 ATGCATTTATATTTTGGACGATAGGA 57.138 30.769 0.00 0.00 43.77 2.94
1904 2311 3.181455 CCCTTTGGGCCTTTTATATTGGC 60.181 47.826 4.53 0.00 45.42 4.52
1905 2312 4.687901 CCCTTTGGGCCTTTTATATTGG 57.312 45.455 4.53 0.00 35.35 3.16
1918 2325 6.695132 AGATTTATTGGATCTAGCCCTTTGGG 60.695 42.308 0.00 0.00 37.74 4.12
1919 2326 6.310149 AGATTTATTGGATCTAGCCCTTTGG 58.690 40.000 0.00 0.00 32.27 3.28
1920 2327 6.432472 GGAGATTTATTGGATCTAGCCCTTTG 59.568 42.308 0.00 0.00 34.13 2.77
1921 2328 6.547402 GGAGATTTATTGGATCTAGCCCTTT 58.453 40.000 0.00 0.00 34.13 3.11
1924 2331 4.508662 CGGAGATTTATTGGATCTAGCCC 58.491 47.826 0.00 0.00 34.13 5.19
1927 2334 5.152623 TGGCGGAGATTTATTGGATCTAG 57.847 43.478 0.00 0.00 34.13 2.43
1928 2335 5.163248 TGTTGGCGGAGATTTATTGGATCTA 60.163 40.000 0.00 0.00 34.13 1.98
1955 2362 2.247358 AGGTCGTTGGATTGGCATTTT 58.753 42.857 0.00 0.00 0.00 1.82
1958 2365 4.640771 ATATAGGTCGTTGGATTGGCAT 57.359 40.909 0.00 0.00 0.00 4.40
1959 2366 4.133820 CAATATAGGTCGTTGGATTGGCA 58.866 43.478 0.00 0.00 0.00 4.92
1960 2367 3.058224 GCAATATAGGTCGTTGGATTGGC 60.058 47.826 0.00 0.00 0.00 4.52
1961 2368 4.389374 AGCAATATAGGTCGTTGGATTGG 58.611 43.478 0.00 0.00 0.00 3.16
1971 2378 5.107298 GCTCGTCATTGAAGCAATATAGGTC 60.107 44.000 5.63 0.00 32.35 3.85
1979 2386 1.800586 GAGTGCTCGTCATTGAAGCAA 59.199 47.619 13.25 0.00 37.24 3.91
1996 2403 0.798776 GCACGCTAAACATGCTGAGT 59.201 50.000 0.00 0.00 33.76 3.41
2001 2408 6.252441 TGTTATTAATTGCACGCTAAACATGC 59.748 34.615 0.00 0.00 38.18 4.06
2056 2463 3.439895 TGCGATAACATTAGGTACGCA 57.560 42.857 12.49 12.49 46.13 5.24
2057 2464 6.642683 ATTATGCGATAACATTAGGTACGC 57.357 37.500 0.00 0.00 42.53 4.42
2096 2515 6.301108 GCACAAAATTAGTTGCACATTGATG 58.699 36.000 0.00 0.00 31.29 3.07
2102 2521 3.382865 TCAGGCACAAAATTAGTTGCACA 59.617 39.130 7.23 0.00 31.29 4.57
2163 2582 8.738645 AATCTCCAAAACTCGCTCTTTTATAT 57.261 30.769 0.00 0.00 0.00 0.86
2177 2596 4.695455 TGAGATCGGTTGAATCTCCAAAAC 59.305 41.667 9.87 0.00 39.90 2.43
2188 2607 0.895530 GAGTGGGTGAGATCGGTTGA 59.104 55.000 0.00 0.00 0.00 3.18
2193 2612 1.114627 TGGATGAGTGGGTGAGATCG 58.885 55.000 0.00 0.00 0.00 3.69
2450 3040 6.779860 ACTTGTCTACAGAAATATGGTTGGT 58.220 36.000 0.00 0.00 0.00 3.67
2451 3041 8.964476 ATACTTGTCTACAGAAATATGGTTGG 57.036 34.615 0.00 0.00 0.00 3.77
2492 3082 6.823689 GGAGACAATTTGATCCTAAGCTGTTA 59.176 38.462 2.79 0.00 0.00 2.41
2516 3106 6.071952 AGGTAACAAGATTATGTGCTGTTTGG 60.072 38.462 0.00 0.00 41.41 3.28
2518 3108 6.942576 AGAGGTAACAAGATTATGTGCTGTTT 59.057 34.615 0.00 0.00 41.41 2.83
2519 3109 6.476378 AGAGGTAACAAGATTATGTGCTGTT 58.524 36.000 0.00 0.00 41.41 3.16
2520 3110 6.054860 AGAGGTAACAAGATTATGTGCTGT 57.945 37.500 0.00 0.00 41.41 4.40
2521 3111 6.992063 AAGAGGTAACAAGATTATGTGCTG 57.008 37.500 0.00 0.00 41.41 4.41
2522 3112 8.079211 TCTAAGAGGTAACAAGATTATGTGCT 57.921 34.615 0.00 0.00 41.41 4.40
2523 3113 8.718102 TTCTAAGAGGTAACAAGATTATGTGC 57.282 34.615 0.00 0.00 41.41 4.57
2532 3122 9.372369 CCATCTTACTTTCTAAGAGGTAACAAG 57.628 37.037 0.00 0.00 37.04 3.16
2533 3123 9.096823 TCCATCTTACTTTCTAAGAGGTAACAA 57.903 33.333 0.00 0.00 37.04 2.83
2534 3124 8.660295 TCCATCTTACTTTCTAAGAGGTAACA 57.340 34.615 0.00 0.00 37.04 2.41
2535 3125 9.752961 GATCCATCTTACTTTCTAAGAGGTAAC 57.247 37.037 0.00 0.00 37.04 2.50
2560 3367 5.575606 GTGACGAGAAATTTTAGGACGATGA 59.424 40.000 0.00 0.00 0.00 2.92
2584 3415 1.156645 CGGAGGGAGTACTACCGTCG 61.157 65.000 18.87 20.54 41.43 5.12
2588 3419 1.341383 TGGAACGGAGGGAGTACTACC 60.341 57.143 17.30 17.30 0.00 3.18
2592 3423 2.845363 TTTTGGAACGGAGGGAGTAC 57.155 50.000 0.00 0.00 0.00 2.73
2593 3424 4.355549 TCTATTTTGGAACGGAGGGAGTA 58.644 43.478 0.00 0.00 0.00 2.59
2594 3425 3.178865 TCTATTTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
2595 3426 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
2596 3427 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
2597 3428 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
2598 3429 3.877508 GGTCATCTATTTTGGAACGGAGG 59.122 47.826 0.00 0.00 0.00 4.30
2599 3430 3.877508 GGGTCATCTATTTTGGAACGGAG 59.122 47.826 0.00 0.00 0.00 4.63
2600 3431 3.264706 TGGGTCATCTATTTTGGAACGGA 59.735 43.478 0.00 0.00 0.00 4.69
2601 3432 3.616219 TGGGTCATCTATTTTGGAACGG 58.384 45.455 0.00 0.00 0.00 4.44
2602 3433 4.700213 AGTTGGGTCATCTATTTTGGAACG 59.300 41.667 0.00 0.00 0.00 3.95
2603 3434 6.590234 AAGTTGGGTCATCTATTTTGGAAC 57.410 37.500 0.00 0.00 0.00 3.62
2604 3435 6.553100 ACAAAGTTGGGTCATCTATTTTGGAA 59.447 34.615 0.00 0.00 0.00 3.53
2605 3436 6.074648 ACAAAGTTGGGTCATCTATTTTGGA 58.925 36.000 0.00 0.00 0.00 3.53
2606 3437 6.345096 ACAAAGTTGGGTCATCTATTTTGG 57.655 37.500 0.00 0.00 0.00 3.28
2607 3438 8.110860 AGTACAAAGTTGGGTCATCTATTTTG 57.889 34.615 0.00 0.00 0.00 2.44
2608 3439 9.802039 TTAGTACAAAGTTGGGTCATCTATTTT 57.198 29.630 0.00 0.00 0.00 1.82
2609 3440 9.227777 GTTAGTACAAAGTTGGGTCATCTATTT 57.772 33.333 0.00 0.00 0.00 1.40
2610 3441 8.603304 AGTTAGTACAAAGTTGGGTCATCTATT 58.397 33.333 0.00 0.00 0.00 1.73
2611 3442 8.147244 AGTTAGTACAAAGTTGGGTCATCTAT 57.853 34.615 0.00 0.00 0.00 1.98
2612 3443 7.549147 AGTTAGTACAAAGTTGGGTCATCTA 57.451 36.000 0.00 0.00 0.00 1.98
2613 3444 6.435292 AGTTAGTACAAAGTTGGGTCATCT 57.565 37.500 0.00 0.00 0.00 2.90
2614 3445 7.012989 ACAAAGTTAGTACAAAGTTGGGTCATC 59.987 37.037 0.00 0.00 0.00 2.92
2615 3446 6.831868 ACAAAGTTAGTACAAAGTTGGGTCAT 59.168 34.615 0.00 0.00 0.00 3.06
2616 3447 6.181908 ACAAAGTTAGTACAAAGTTGGGTCA 58.818 36.000 0.00 0.00 0.00 4.02
2617 3448 6.688637 ACAAAGTTAGTACAAAGTTGGGTC 57.311 37.500 0.00 0.00 0.00 4.46
2618 3449 7.341030 AGTACAAAGTTAGTACAAAGTTGGGT 58.659 34.615 6.30 0.00 43.24 4.51
2619 3450 7.797038 AGTACAAAGTTAGTACAAAGTTGGG 57.203 36.000 6.30 0.00 43.24 4.12
2654 3485 9.746711 CGTTCTAAAATAGATGACTCAACTTTG 57.253 33.333 0.00 0.00 34.22 2.77
2655 3486 8.936864 CCGTTCTAAAATAGATGACTCAACTTT 58.063 33.333 0.00 0.00 34.22 2.66
2656 3487 8.311836 TCCGTTCTAAAATAGATGACTCAACTT 58.688 33.333 0.00 0.00 34.22 2.66
2657 3488 7.837863 TCCGTTCTAAAATAGATGACTCAACT 58.162 34.615 0.00 0.00 34.22 3.16
2658 3489 7.222999 CCTCCGTTCTAAAATAGATGACTCAAC 59.777 40.741 0.00 0.00 34.22 3.18
2659 3490 7.265673 CCTCCGTTCTAAAATAGATGACTCAA 58.734 38.462 0.00 0.00 34.22 3.02
2660 3491 6.183360 CCCTCCGTTCTAAAATAGATGACTCA 60.183 42.308 0.00 0.00 34.22 3.41
2661 3492 6.040616 TCCCTCCGTTCTAAAATAGATGACTC 59.959 42.308 0.00 0.00 34.22 3.36
2662 3493 5.897824 TCCCTCCGTTCTAAAATAGATGACT 59.102 40.000 0.00 0.00 34.22 3.41
2663 3494 6.158023 TCCCTCCGTTCTAAAATAGATGAC 57.842 41.667 0.00 0.00 34.22 3.06
2664 3495 5.897824 ACTCCCTCCGTTCTAAAATAGATGA 59.102 40.000 0.00 0.00 34.22 2.92
2665 3496 6.163135 ACTCCCTCCGTTCTAAAATAGATG 57.837 41.667 0.00 0.00 34.22 2.90
2666 3497 7.068061 ACTACTCCCTCCGTTCTAAAATAGAT 58.932 38.462 0.00 0.00 34.22 1.98
2667 3498 6.430007 ACTACTCCCTCCGTTCTAAAATAGA 58.570 40.000 0.00 0.00 0.00 1.98
2668 3499 6.712179 ACTACTCCCTCCGTTCTAAAATAG 57.288 41.667 0.00 0.00 0.00 1.73
2669 3500 6.628844 GCAACTACTCCCTCCGTTCTAAAATA 60.629 42.308 0.00 0.00 0.00 1.40
2670 3501 5.731591 CAACTACTCCCTCCGTTCTAAAAT 58.268 41.667 0.00 0.00 0.00 1.82
2671 3502 4.562143 GCAACTACTCCCTCCGTTCTAAAA 60.562 45.833 0.00 0.00 0.00 1.52
2672 3503 3.056322 GCAACTACTCCCTCCGTTCTAAA 60.056 47.826 0.00 0.00 0.00 1.85
2673 3504 2.494870 GCAACTACTCCCTCCGTTCTAA 59.505 50.000 0.00 0.00 0.00 2.10
2674 3505 2.097825 GCAACTACTCCCTCCGTTCTA 58.902 52.381 0.00 0.00 0.00 2.10
2675 3506 0.896226 GCAACTACTCCCTCCGTTCT 59.104 55.000 0.00 0.00 0.00 3.01
2676 3507 0.896226 AGCAACTACTCCCTCCGTTC 59.104 55.000 0.00 0.00 0.00 3.95
2677 3508 1.349067 AAGCAACTACTCCCTCCGTT 58.651 50.000 0.00 0.00 0.00 4.44
2678 3509 2.226962 TAAGCAACTACTCCCTCCGT 57.773 50.000 0.00 0.00 0.00 4.69
2679 3510 2.496470 AGTTAAGCAACTACTCCCTCCG 59.504 50.000 0.00 0.00 43.33 4.63
2680 3511 3.369576 CCAGTTAAGCAACTACTCCCTCC 60.370 52.174 0.00 0.00 43.30 4.30
2681 3512 3.514309 TCCAGTTAAGCAACTACTCCCTC 59.486 47.826 0.00 0.00 43.30 4.30
2682 3513 3.515901 CTCCAGTTAAGCAACTACTCCCT 59.484 47.826 0.00 0.00 43.30 4.20
2683 3514 3.261137 ACTCCAGTTAAGCAACTACTCCC 59.739 47.826 0.00 0.00 43.30 4.30
2684 3515 4.538746 ACTCCAGTTAAGCAACTACTCC 57.461 45.455 0.00 0.00 43.30 3.85
2685 3516 6.689554 ACTTACTCCAGTTAAGCAACTACTC 58.310 40.000 0.00 0.00 43.30 2.59
2987 3876 0.179156 CAATGCGCTTCGGAAATGCT 60.179 50.000 9.73 0.08 0.00 3.79
2989 3878 2.095853 ACTACAATGCGCTTCGGAAATG 59.904 45.455 9.73 0.00 0.00 2.32
2995 3884 3.066369 TCTAGACTACAATGCGCTTCG 57.934 47.619 9.73 0.00 0.00 3.79
3002 3891 8.681806 TGAGATTCTCAGTTCTAGACTACAATG 58.318 37.037 12.38 0.00 35.39 2.82
3021 3928 6.681777 ACTTTGTTACCATTTGCTGAGATTC 58.318 36.000 0.00 0.00 0.00 2.52
3042 3949 3.751518 AGCGGAATAGTTTGGTGAACTT 58.248 40.909 0.00 0.00 46.34 2.66
3044 3951 3.821841 CAAGCGGAATAGTTTGGTGAAC 58.178 45.455 0.00 0.00 38.58 3.18
3056 3963 1.878775 GCTTCACTGCAAGCGGAAT 59.121 52.632 8.05 0.00 39.55 3.01
3133 4040 3.906720 TGGAGGGCTACATTAGTTCAC 57.093 47.619 0.00 0.00 0.00 3.18
3190 4136 9.299963 CAGATCGCCAATTGTATTTTTGAATAA 57.700 29.630 4.43 0.00 0.00 1.40
3191 4137 8.465999 ACAGATCGCCAATTGTATTTTTGAATA 58.534 29.630 4.43 0.00 0.00 1.75
3192 4138 7.322664 ACAGATCGCCAATTGTATTTTTGAAT 58.677 30.769 4.43 0.00 0.00 2.57
3193 4139 6.686630 ACAGATCGCCAATTGTATTTTTGAA 58.313 32.000 4.43 0.00 0.00 2.69
3194 4140 6.266168 ACAGATCGCCAATTGTATTTTTGA 57.734 33.333 4.43 0.00 0.00 2.69
3195 4141 6.585702 TCAACAGATCGCCAATTGTATTTTTG 59.414 34.615 4.43 0.00 0.00 2.44
3196 4142 6.686630 TCAACAGATCGCCAATTGTATTTTT 58.313 32.000 4.43 0.00 0.00 1.94
3197 4143 6.266168 TCAACAGATCGCCAATTGTATTTT 57.734 33.333 4.43 0.00 0.00 1.82
3198 4144 5.895636 TCAACAGATCGCCAATTGTATTT 57.104 34.783 4.43 0.00 0.00 1.40
3199 4145 5.895636 TTCAACAGATCGCCAATTGTATT 57.104 34.783 4.43 0.00 0.00 1.89
3200 4146 5.895636 TTTCAACAGATCGCCAATTGTAT 57.104 34.783 4.43 0.00 0.00 2.29
3201 4147 5.414144 TGATTTCAACAGATCGCCAATTGTA 59.586 36.000 4.43 0.00 0.00 2.41
3202 4148 4.218200 TGATTTCAACAGATCGCCAATTGT 59.782 37.500 4.43 0.00 0.00 2.71
3203 4149 4.735985 TGATTTCAACAGATCGCCAATTG 58.264 39.130 0.00 0.00 0.00 2.32
3204 4150 5.389859 TTGATTTCAACAGATCGCCAATT 57.610 34.783 0.00 0.00 0.00 2.32
3331 4283 6.901265 TGTCAACATGTTGTGTGATATTCTG 58.099 36.000 31.99 8.52 41.14 3.02
3464 5655 4.212214 GCAAGTAGCAGTTGCCATATACTC 59.788 45.833 14.21 0.00 46.09 2.59
3465 5656 4.130118 GCAAGTAGCAGTTGCCATATACT 58.870 43.478 14.21 0.00 46.09 2.12
3466 5657 4.474226 GCAAGTAGCAGTTGCCATATAC 57.526 45.455 14.21 0.00 46.09 1.47
3613 6160 3.577848 TGCATCAGTAAGCCAACCAAATT 59.422 39.130 0.00 0.00 0.00 1.82
3620 6167 1.350684 TCACCTGCATCAGTAAGCCAA 59.649 47.619 0.00 0.00 0.00 4.52
3660 6211 4.040217 TGCATTACAAAAGGAAAGTGCCAT 59.960 37.500 0.00 0.00 0.00 4.40
3712 6269 3.521560 GAGCGATTAGTCACACCAATCA 58.478 45.455 0.00 0.00 0.00 2.57
3713 6270 2.535984 CGAGCGATTAGTCACACCAATC 59.464 50.000 0.00 0.00 0.00 2.67
3714 6271 2.165641 TCGAGCGATTAGTCACACCAAT 59.834 45.455 0.00 0.00 0.00 3.16
3715 6272 1.542472 TCGAGCGATTAGTCACACCAA 59.458 47.619 0.00 0.00 0.00 3.67
3716 6273 1.170442 TCGAGCGATTAGTCACACCA 58.830 50.000 0.00 0.00 0.00 4.17
4046 7628 4.706962 GCAGGAATATCCAAACTCCAACTT 59.293 41.667 0.00 0.00 39.61 2.66
4056 7638 3.084536 TGTTGCAGCAGGAATATCCAA 57.915 42.857 0.00 0.00 39.61 3.53
4224 7807 0.313987 TATCGCTGCATGTACCGAGG 59.686 55.000 7.28 0.00 32.86 4.63
4266 7849 2.287373 GCAAATGCGATCTTCTGAGGAG 59.713 50.000 0.00 0.00 0.00 3.69
4355 7938 3.696548 TGTTTTGTCACATGCCACTTACA 59.303 39.130 0.00 0.00 0.00 2.41
4431 8014 8.924511 AACTCCATCCCTGTATAACAATAATG 57.075 34.615 0.00 0.00 0.00 1.90
4599 8183 3.813166 GTGTGCTGAACTTACCTGCTTTA 59.187 43.478 0.00 0.00 0.00 1.85
4653 8239 6.818644 TCTGCATTTCAACCTAACTCTACATC 59.181 38.462 0.00 0.00 0.00 3.06
4663 8249 6.041409 TCCACAAAATTCTGCATTTCAACCTA 59.959 34.615 0.00 0.00 33.60 3.08
4667 8253 4.751098 GCTCCACAAAATTCTGCATTTCAA 59.249 37.500 0.00 0.00 33.60 2.69
5010 9110 7.719633 TGCTCAGATAAAAGTACCTTTGTTTCT 59.280 33.333 0.00 0.00 33.64 2.52
5013 9113 6.072452 GCTGCTCAGATAAAAGTACCTTTGTT 60.072 38.462 0.29 0.00 33.64 2.83
5182 9283 3.257624 TCTCCCGACAACCTTTTCTAGAC 59.742 47.826 0.00 0.00 0.00 2.59
5222 9332 3.435275 TCTACTCCAGACTTCAGTGCAT 58.565 45.455 0.00 0.00 0.00 3.96
5309 9419 2.996621 GAGACCTCAACACTGGATTTCG 59.003 50.000 0.00 0.00 0.00 3.46
5365 9482 5.893824 AGAGAATTTACACCCCAATCATTCC 59.106 40.000 0.00 0.00 0.00 3.01
5394 9511 8.041323 AGTATGTTCTACAAAGGATCGACAAAT 58.959 33.333 0.00 0.00 0.00 2.32
5441 9559 6.456315 GCACACACACGTTGCTAATATCAATA 60.456 38.462 1.95 0.00 0.00 1.90
5508 13078 2.164624 TGCCCGGATTTTGGAATTTACG 59.835 45.455 0.73 0.00 0.00 3.18
5623 13213 4.953940 TGCTTTGGCCTAAAATTGAAGT 57.046 36.364 3.32 0.00 37.74 3.01
5675 13265 8.922237 TGGCCTCAGAATTGCATAATAAAAATA 58.078 29.630 3.32 0.00 0.00 1.40
5701 13291 0.392706 TCACATTGACACTGGCGACT 59.607 50.000 0.00 0.00 0.00 4.18
5702 13292 0.792640 CTCACATTGACACTGGCGAC 59.207 55.000 0.00 0.00 0.00 5.19
5703 13293 0.392706 ACTCACATTGACACTGGCGA 59.607 50.000 0.00 0.00 0.00 5.54
5704 13294 2.078849 TACTCACATTGACACTGGCG 57.921 50.000 0.00 0.00 0.00 5.69
5705 13295 3.871594 GGTATACTCACATTGACACTGGC 59.128 47.826 2.25 0.00 0.00 4.85
5706 13296 5.084818 TGGTATACTCACATTGACACTGG 57.915 43.478 2.25 0.00 0.00 4.00
5707 13297 5.755375 GGATGGTATACTCACATTGACACTG 59.245 44.000 2.25 0.00 0.00 3.66
5708 13298 5.425217 TGGATGGTATACTCACATTGACACT 59.575 40.000 2.25 0.00 0.00 3.55
5711 13301 6.582636 TCTTGGATGGTATACTCACATTGAC 58.417 40.000 2.25 0.00 0.00 3.18
5856 13446 9.765795 GTGCAGGTAATATCTTTAGTAGATGTT 57.234 33.333 0.00 0.00 43.52 2.71
5917 13507 5.407387 GCGAAGTTTCATCACTTTGGTAGTA 59.593 40.000 3.55 0.00 38.27 1.82
5933 13523 4.439057 TCAACAACTCTACTGCGAAGTTT 58.561 39.130 0.00 0.00 0.00 2.66
5940 13530 3.499918 AGCAACATCAACAACTCTACTGC 59.500 43.478 0.00 0.00 0.00 4.40
5943 13533 5.926542 TCAGTAGCAACATCAACAACTCTAC 59.073 40.000 0.00 0.00 0.00 2.59
5970 13560 6.376864 TGATGTGTTGTCCGGAAATTGATTAT 59.623 34.615 5.23 0.00 0.00 1.28
5972 13562 4.522405 TGATGTGTTGTCCGGAAATTGATT 59.478 37.500 5.23 0.00 0.00 2.57
5973 13563 4.078537 TGATGTGTTGTCCGGAAATTGAT 58.921 39.130 5.23 0.00 0.00 2.57
5974 13564 3.252215 GTGATGTGTTGTCCGGAAATTGA 59.748 43.478 5.23 0.00 0.00 2.57
5977 13567 2.813754 CTGTGATGTGTTGTCCGGAAAT 59.186 45.455 5.23 0.00 0.00 2.17
5979 13569 1.542328 CCTGTGATGTGTTGTCCGGAA 60.542 52.381 5.23 0.00 0.00 4.30
5980 13570 0.034756 CCTGTGATGTGTTGTCCGGA 59.965 55.000 0.00 0.00 0.00 5.14
5981 13571 1.577328 GCCTGTGATGTGTTGTCCGG 61.577 60.000 0.00 0.00 0.00 5.14
5982 13572 1.577328 GGCCTGTGATGTGTTGTCCG 61.577 60.000 0.00 0.00 0.00 4.79
5985 13576 1.133823 TCAAGGCCTGTGATGTGTTGT 60.134 47.619 5.69 0.00 0.00 3.32
5997 13588 1.204113 CCCCAACTCTCTCAAGGCCT 61.204 60.000 0.00 0.00 0.00 5.19
6009 13604 1.146982 ACAATGGCAAGTACCCCAACT 59.853 47.619 0.00 0.00 34.25 3.16
6198 13795 8.862325 ATGTCAGAAAATCACAGTACCATTTA 57.138 30.769 0.00 0.00 0.00 1.40
6267 13899 5.658190 CCCATTCAACATCAAGATACCCTTT 59.342 40.000 0.00 0.00 31.42 3.11


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.