Multiple sequence alignment - TraesCS6B01G057900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G057900 chr6B 100.000 3763 0 0 1 3763 38567123 38563361 0.000000e+00 6950.0
1 TraesCS6B01G057900 chr6B 97.305 1410 35 3 1891 3298 46654382 46655790 0.000000e+00 2390.0
2 TraesCS6B01G057900 chr6B 91.631 1183 76 10 268 1428 46653211 46654392 0.000000e+00 1615.0
3 TraesCS6B01G057900 chr6B 91.174 997 72 6 1891 2886 37652545 37651564 0.000000e+00 1339.0
4 TraesCS6B01G057900 chr6B 97.983 694 14 0 735 1428 37653228 37652535 0.000000e+00 1205.0
5 TraesCS6B01G057900 chr6B 86.923 910 94 7 1893 2793 37035893 37036786 0.000000e+00 998.0
6 TraesCS6B01G057900 chr6B 86.851 905 101 9 1891 2794 37644561 37643674 0.000000e+00 996.0
7 TraesCS6B01G057900 chr6B 86.645 906 103 9 1891 2794 38541030 38540141 0.000000e+00 987.0
8 TraesCS6B01G057900 chr6B 87.211 821 88 11 1891 2710 46662361 46663165 0.000000e+00 918.0
9 TraesCS6B01G057900 chr6B 98.301 471 6 2 1425 1893 47927908 47927438 0.000000e+00 824.0
10 TraesCS6B01G057900 chr6B 84.918 736 94 9 2059 2793 37775429 37774710 0.000000e+00 728.0
11 TraesCS6B01G057900 chr6B 97.507 361 8 1 3404 3763 37651499 37651139 1.920000e-172 616.0
12 TraesCS6B01G057900 chr6B 90.022 451 45 0 979 1429 38625775 38625325 5.420000e-163 584.0
13 TraesCS6B01G057900 chr6B 87.131 474 58 1 956 1429 37645020 37644550 5.530000e-148 534.0
14 TraesCS6B01G057900 chr6B 86.709 474 54 3 956 1429 37035438 37035902 5.570000e-143 518.0
15 TraesCS6B01G057900 chr6B 88.509 322 26 5 1 318 46652907 46653221 2.740000e-101 379.0
16 TraesCS6B01G057900 chr6B 87.747 253 29 2 3329 3580 46655782 46656033 1.020000e-75 294.0
17 TraesCS6B01G057900 chr6B 87.912 182 18 4 89 267 464929521 464929701 1.060000e-50 211.0
18 TraesCS6B01G057900 chr6B 80.193 207 30 9 3536 3739 37045917 37046115 1.090000e-30 145.0
19 TraesCS6B01G057900 chr6B 79.167 144 22 7 3349 3487 37643403 37643263 4.000000e-15 93.5
20 TraesCS6B01G057900 chr6B 80.508 118 17 5 3373 3486 38539841 38539726 6.700000e-13 86.1
21 TraesCS6B01G057900 chr6B 95.349 43 2 0 3179 3221 38563905 38563863 6.740000e-08 69.4
22 TraesCS6B01G057900 chr6B 95.349 43 2 0 3219 3261 38563945 38563903 6.740000e-08 69.4
23 TraesCS6B01G057900 chr6B 95.349 43 2 0 3219 3261 46655671 46655713 6.740000e-08 69.4
24 TraesCS6B01G057900 chr6B 95.349 43 2 0 3179 3221 46655711 46655753 6.740000e-08 69.4
25 TraesCS6B01G057900 chr6B 88.000 50 2 2 3441 3487 37057293 37057341 5.250000e-04 56.5
26 TraesCS6B01G057900 chr6B 88.000 50 3 1 3441 3487 37773820 37773771 5.250000e-04 56.5
27 TraesCS6B01G057900 chr6B 96.875 32 0 1 3102 3133 37036855 37036885 7.000000e-03 52.8
28 TraesCS6B01G057900 chr6D 92.779 1191 50 9 271 1428 23642955 23641768 0.000000e+00 1690.0
29 TraesCS6B01G057900 chr6D 90.873 997 75 6 1891 2886 23641778 23640797 0.000000e+00 1323.0
30 TraesCS6B01G057900 chr6D 86.947 904 101 8 1891 2793 23631734 23630847 0.000000e+00 1000.0
31 TraesCS6B01G057900 chr6D 87.500 632 34 21 3136 3761 23640646 23640054 0.000000e+00 688.0
32 TraesCS6B01G057900 chr6D 87.764 474 49 4 956 1429 23632187 23631723 2.560000e-151 545.0
33 TraesCS6B01G057900 chr6D 88.462 338 30 6 3150 3486 23638653 23638324 2.110000e-107 399.0
34 TraesCS6B01G057900 chr6D 88.785 321 26 4 2 318 23643262 23642948 5.900000e-103 385.0
35 TraesCS6B01G057900 chr6D 91.429 70 5 1 3032 3100 23640800 23640731 1.110000e-15 95.3
36 TraesCS6B01G057900 chr6D 95.349 43 2 0 3219 3261 23638623 23638581 6.740000e-08 69.4
37 TraesCS6B01G057900 chr6D 93.023 43 3 0 3179 3221 23638583 23638541 3.140000e-06 63.9
38 TraesCS6B01G057900 chr6A 89.698 961 78 8 1891 2844 22200560 22199614 0.000000e+00 1206.0
39 TraesCS6B01G057900 chr6A 96.018 653 26 0 776 1428 22201202 22200550 0.000000e+00 1062.0
40 TraesCS6B01G057900 chr6A 86.504 904 105 9 1891 2793 22193046 22192159 0.000000e+00 977.0
41 TraesCS6B01G057900 chr6A 98.920 463 5 0 1429 1891 564277053 564276591 0.000000e+00 828.0
42 TraesCS6B01G057900 chr6A 90.129 466 45 1 271 736 22203127 22202663 4.160000e-169 604.0
43 TraesCS6B01G057900 chr6A 89.619 472 49 0 958 1429 22361812 22361341 5.380000e-168 601.0
44 TraesCS6B01G057900 chr6A 94.774 287 14 1 3477 3763 22199043 22198758 2.670000e-121 446.0
45 TraesCS6B01G057900 chr6A 90.308 227 18 3 1 223 22245819 22245593 1.020000e-75 294.0
46 TraesCS6B01G057900 chr6A 93.370 181 11 1 3257 3437 22199219 22199040 2.230000e-67 267.0
47 TraesCS6B01G057900 chr6A 100.000 31 0 0 739 769 22202645 22202615 1.460000e-04 58.4
48 TraesCS6B01G057900 chr3A 98.750 480 4 2 1423 1901 741252270 741251792 0.000000e+00 852.0
49 TraesCS6B01G057900 chr3A 91.765 85 5 1 1 83 452493715 452493799 2.370000e-22 117.0
50 TraesCS6B01G057900 chr5A 99.352 463 3 0 1429 1891 230804855 230805317 0.000000e+00 839.0
51 TraesCS6B01G057900 chr5A 86.585 82 7 3 1 79 258031016 258031096 1.860000e-13 87.9
52 TraesCS6B01G057900 chr2A 98.925 465 5 0 1427 1891 620050 620514 0.000000e+00 832.0
53 TraesCS6B01G057900 chr4A 98.920 463 5 0 1429 1891 363711357 363710895 0.000000e+00 828.0
54 TraesCS6B01G057900 chr4A 86.010 193 18 6 82 267 261962829 261963019 8.240000e-47 198.0
55 TraesCS6B01G057900 chr5B 98.913 460 5 0 1432 1891 598292846 598293305 0.000000e+00 822.0
56 TraesCS6B01G057900 chr1A 98.498 466 6 1 1427 1891 73109648 73109183 0.000000e+00 821.0
57 TraesCS6B01G057900 chr4B 98.287 467 8 0 1429 1895 229178931 229178465 0.000000e+00 819.0
58 TraesCS6B01G057900 chr3B 90.585 393 29 4 2497 2885 744916143 744915755 7.210000e-142 514.0
59 TraesCS6B01G057900 chr3B 81.319 273 32 7 3219 3491 744915457 744915204 1.770000e-48 204.0
60 TraesCS6B01G057900 chr3B 91.765 85 5 1 3136 3218 744915502 744915418 2.370000e-22 117.0
61 TraesCS6B01G057900 chr3B 96.491 57 2 0 3026 3082 744915763 744915707 1.110000e-15 95.3
62 TraesCS6B01G057900 chr7D 89.011 182 17 3 89 267 272542274 272542093 4.890000e-54 222.0
63 TraesCS6B01G057900 chr7D 86.264 182 22 3 89 267 25300958 25300777 1.070000e-45 195.0
64 TraesCS6B01G057900 chr1D 88.398 181 19 2 89 267 218267201 218267021 2.280000e-52 217.0
65 TraesCS6B01G057900 chr2B 87.978 183 18 3 89 267 328597495 328597313 2.940000e-51 213.0
66 TraesCS6B01G057900 chr5D 91.250 80 5 1 1 78 273918847 273918768 1.430000e-19 108.0
67 TraesCS6B01G057900 chr3D 87.059 85 9 1 1 83 110830898 110830814 1.110000e-15 95.3
68 TraesCS6B01G057900 chr3D 87.654 81 8 1 1 79 132284821 132284741 4.000000e-15 93.5
69 TraesCS6B01G057900 chr3D 86.420 81 9 2 1 79 132286024 132285944 1.860000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G057900 chr6B 38563361 38567123 3762 True 2362.933333 6950 96.899333 1 3763 3 chr6B.!!$R7 3762
1 TraesCS6B01G057900 chr6B 37651139 37653228 2089 True 1053.333333 1339 95.554667 735 3763 3 chr6B.!!$R4 3028
2 TraesCS6B01G057900 chr6B 46662361 46663165 804 False 918.000000 918 87.211000 1891 2710 1 chr6B.!!$F3 819
3 TraesCS6B01G057900 chr6B 46652907 46656033 3126 False 802.800000 2390 92.648333 1 3580 6 chr6B.!!$F6 3579
4 TraesCS6B01G057900 chr6B 37643263 37645020 1757 True 541.166667 996 84.383000 956 3487 3 chr6B.!!$R3 2531
5 TraesCS6B01G057900 chr6B 38539726 38541030 1304 True 536.550000 987 83.576500 1891 3486 2 chr6B.!!$R6 1595
6 TraesCS6B01G057900 chr6B 37035438 37036885 1447 False 522.933333 998 90.169000 956 3133 3 chr6B.!!$F5 2177
7 TraesCS6B01G057900 chr6B 37773771 37775429 1658 True 392.250000 728 86.459000 2059 3487 2 chr6B.!!$R5 1428
8 TraesCS6B01G057900 chr6D 23630847 23632187 1340 True 772.500000 1000 87.355500 956 2793 2 chr6D.!!$R1 1837
9 TraesCS6B01G057900 chr6D 23638324 23643262 4938 True 589.200000 1690 91.025000 2 3761 8 chr6D.!!$R2 3759
10 TraesCS6B01G057900 chr6A 22192159 22193046 887 True 977.000000 977 86.504000 1891 2793 1 chr6A.!!$R1 902
11 TraesCS6B01G057900 chr6A 22198758 22203127 4369 True 607.233333 1206 93.998167 271 3763 6 chr6A.!!$R5 3492
12 TraesCS6B01G057900 chr3B 744915204 744916143 939 True 232.575000 514 90.040000 2497 3491 4 chr3B.!!$R1 994

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
864 2333 1.009829 CTCGAAGCCCAGTACATTGC 58.990 55.0 0.00 0.0 0.00 3.56 F
1457 2927 0.108186 TCTGTGAGCTTATGCACCCG 60.108 55.0 3.16 0.0 42.74 5.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1879 3349 0.238289 CCTGAGCGCGAAAACATGTT 59.762 50.0 12.1 4.92 0.00 2.71 R
3024 4510 0.463620 GGAGATCAGCACTCAGTCCC 59.536 60.0 0.0 0.00 36.26 4.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 36 7.068593 TCCCGGTTTTAGAGAATTTATAGTCGA 59.931 37.037 0.00 0.00 0.00 4.20
94 97 1.503542 GGCACGCATTTCTGGACTG 59.496 57.895 0.00 0.00 0.00 3.51
310 350 3.582208 AGACTTGTGGAGAATGCTCTCTT 59.418 43.478 0.00 0.00 46.45 2.85
328 368 7.496920 TGCTCTCTTGACATGGTTGATAAATAG 59.503 37.037 0.00 0.00 0.00 1.73
387 427 1.935799 ACCTGGCATGCCAAATGTTA 58.064 45.000 37.47 15.41 46.63 2.41
488 528 8.798859 ATCTATGAAGTACTGAGCACAAAAAT 57.201 30.769 0.00 0.00 0.00 1.82
516 556 4.020543 TCATGGGGGCATGTTTACTAAAC 58.979 43.478 4.90 4.90 41.73 2.01
519 559 2.681344 GGGGGCATGTTTACTAAACGAG 59.319 50.000 7.10 3.80 44.28 4.18
520 560 3.340928 GGGGCATGTTTACTAAACGAGT 58.659 45.455 7.10 0.00 44.28 4.18
526 567 5.332808 GCATGTTTACTAAACGAGTCGTGTT 60.333 40.000 20.68 16.76 44.28 3.32
530 571 3.155093 ACTAAACGAGTCGTGTTGTGT 57.845 42.857 20.68 10.58 39.99 3.72
563 604 1.304713 CACCCTTCAGCCCAAGCAT 60.305 57.895 0.00 0.00 43.56 3.79
864 2333 1.009829 CTCGAAGCCCAGTACATTGC 58.990 55.000 0.00 0.00 0.00 3.56
1080 2549 3.064987 CTCGACCCTGTTCGCCGAT 62.065 63.158 0.00 0.00 38.95 4.18
1225 2694 0.732880 CAACTTCGTCATCTCGCCGT 60.733 55.000 0.00 0.00 0.00 5.68
1392 2862 2.651361 CAGACGTCCTTCGCCTGT 59.349 61.111 13.01 0.00 43.22 4.00
1407 2877 3.589654 CTGTGGCGTGTGGGTCGAT 62.590 63.158 0.00 0.00 0.00 3.59
1417 2887 3.917760 GGGTCGATCGGAGGCTGG 61.918 72.222 16.41 0.00 0.00 4.85
1418 2888 4.593864 GGTCGATCGGAGGCTGGC 62.594 72.222 16.41 0.00 0.00 4.85
1419 2889 4.933064 GTCGATCGGAGGCTGGCG 62.933 72.222 16.41 0.00 0.00 5.69
1422 2892 4.959596 GATCGGAGGCTGGCGCTC 62.960 72.222 7.64 0.00 36.09 5.03
1435 2905 3.570638 CGCTCAGGCCGAATGCAG 61.571 66.667 0.00 0.00 43.89 4.41
1436 2906 2.124983 GCTCAGGCCGAATGCAGA 60.125 61.111 0.00 0.00 43.89 4.26
1437 2907 1.525535 GCTCAGGCCGAATGCAGAT 60.526 57.895 0.00 0.00 43.89 2.90
1438 2908 1.099879 GCTCAGGCCGAATGCAGATT 61.100 55.000 0.00 0.00 43.89 2.40
1439 2909 0.942962 CTCAGGCCGAATGCAGATTC 59.057 55.000 0.00 0.00 43.89 2.52
1440 2910 0.543277 TCAGGCCGAATGCAGATTCT 59.457 50.000 0.00 0.00 43.89 2.40
1441 2911 0.661552 CAGGCCGAATGCAGATTCTG 59.338 55.000 9.40 9.40 43.89 3.02
1442 2912 0.254178 AGGCCGAATGCAGATTCTGT 59.746 50.000 14.90 0.00 43.89 3.41
1443 2913 0.379669 GGCCGAATGCAGATTCTGTG 59.620 55.000 14.90 1.34 43.89 3.66
1444 2914 1.372582 GCCGAATGCAGATTCTGTGA 58.627 50.000 14.90 3.10 40.77 3.58
1445 2915 1.329906 GCCGAATGCAGATTCTGTGAG 59.670 52.381 14.90 3.39 40.77 3.51
1446 2916 1.329906 CCGAATGCAGATTCTGTGAGC 59.670 52.381 14.90 1.39 36.56 4.26
1447 2917 2.277969 CGAATGCAGATTCTGTGAGCT 58.722 47.619 14.90 0.00 36.56 4.09
1448 2918 2.676839 CGAATGCAGATTCTGTGAGCTT 59.323 45.455 14.90 2.62 36.56 3.74
1449 2919 3.867493 CGAATGCAGATTCTGTGAGCTTA 59.133 43.478 14.90 0.00 36.56 3.09
1450 2920 4.510711 CGAATGCAGATTCTGTGAGCTTAT 59.489 41.667 14.90 0.00 36.56 1.73
1451 2921 5.558463 CGAATGCAGATTCTGTGAGCTTATG 60.558 44.000 14.90 0.00 36.56 1.90
1452 2922 2.941064 TGCAGATTCTGTGAGCTTATGC 59.059 45.455 14.90 0.00 34.98 3.14
1453 2923 2.941064 GCAGATTCTGTGAGCTTATGCA 59.059 45.455 14.90 0.00 36.29 3.96
1454 2924 3.242673 GCAGATTCTGTGAGCTTATGCAC 60.243 47.826 14.90 0.00 36.29 4.57
1455 2925 3.311871 CAGATTCTGTGAGCTTATGCACC 59.688 47.826 5.46 0.00 42.74 5.01
1456 2926 2.113860 TTCTGTGAGCTTATGCACCC 57.886 50.000 3.16 0.00 42.74 4.61
1457 2927 0.108186 TCTGTGAGCTTATGCACCCG 60.108 55.000 3.16 0.00 42.74 5.28
1458 2928 1.078497 TGTGAGCTTATGCACCCGG 60.078 57.895 0.00 0.00 42.74 5.73
1459 2929 1.819632 GTGAGCTTATGCACCCGGG 60.820 63.158 22.25 22.25 42.74 5.73
1460 2930 2.902343 GAGCTTATGCACCCGGGC 60.902 66.667 24.08 8.36 42.74 6.13
1461 2931 4.506255 AGCTTATGCACCCGGGCC 62.506 66.667 24.08 13.26 42.74 5.80
1462 2932 4.506255 GCTTATGCACCCGGGCCT 62.506 66.667 24.08 5.01 39.41 5.19
1463 2933 2.203209 CTTATGCACCCGGGCCTC 60.203 66.667 24.08 10.65 0.00 4.70
1464 2934 3.012119 TTATGCACCCGGGCCTCA 61.012 61.111 24.08 16.72 0.00 3.86
1465 2935 3.338275 TTATGCACCCGGGCCTCAC 62.338 63.158 24.08 6.09 0.00 3.51
1467 2937 2.882403 TATGCACCCGGGCCTCACTA 62.882 60.000 24.08 1.79 0.00 2.74
1468 2938 3.480133 GCACCCGGGCCTCACTAT 61.480 66.667 24.08 0.00 0.00 2.12
1469 2939 2.822399 CACCCGGGCCTCACTATC 59.178 66.667 24.08 0.00 0.00 2.08
1470 2940 2.446036 ACCCGGGCCTCACTATCC 60.446 66.667 24.08 0.00 0.00 2.59
1471 2941 2.122813 CCCGGGCCTCACTATCCT 60.123 66.667 8.08 0.00 0.00 3.24
1472 2942 1.155390 CCCGGGCCTCACTATCCTA 59.845 63.158 8.08 0.00 0.00 2.94
1473 2943 0.471211 CCCGGGCCTCACTATCCTAA 60.471 60.000 8.08 0.00 0.00 2.69
1474 2944 0.680061 CCGGGCCTCACTATCCTAAC 59.320 60.000 0.84 0.00 0.00 2.34
1475 2945 1.410004 CGGGCCTCACTATCCTAACA 58.590 55.000 0.84 0.00 0.00 2.41
1476 2946 1.068741 CGGGCCTCACTATCCTAACAC 59.931 57.143 0.84 0.00 0.00 3.32
1477 2947 2.399580 GGGCCTCACTATCCTAACACT 58.600 52.381 0.84 0.00 0.00 3.55
1478 2948 2.365941 GGGCCTCACTATCCTAACACTC 59.634 54.545 0.84 0.00 0.00 3.51
1479 2949 2.365941 GGCCTCACTATCCTAACACTCC 59.634 54.545 0.00 0.00 0.00 3.85
1480 2950 3.031736 GCCTCACTATCCTAACACTCCA 58.968 50.000 0.00 0.00 0.00 3.86
1481 2951 3.451178 GCCTCACTATCCTAACACTCCAA 59.549 47.826 0.00 0.00 0.00 3.53
1482 2952 4.101741 GCCTCACTATCCTAACACTCCAAT 59.898 45.833 0.00 0.00 0.00 3.16
1483 2953 5.605534 CCTCACTATCCTAACACTCCAATG 58.394 45.833 0.00 0.00 0.00 2.82
1484 2954 5.129485 CCTCACTATCCTAACACTCCAATGT 59.871 44.000 0.00 0.00 0.00 2.71
1485 2955 6.352222 CCTCACTATCCTAACACTCCAATGTT 60.352 42.308 0.00 0.00 44.87 2.71
1486 2956 6.406370 TCACTATCCTAACACTCCAATGTTG 58.594 40.000 1.46 0.00 42.74 3.33
1487 2957 5.065218 CACTATCCTAACACTCCAATGTTGC 59.935 44.000 1.46 0.00 42.74 4.17
1488 2958 3.788227 TCCTAACACTCCAATGTTGCT 57.212 42.857 1.46 0.00 42.74 3.91
1489 2959 4.098914 TCCTAACACTCCAATGTTGCTT 57.901 40.909 1.46 0.00 42.74 3.91
1490 2960 4.469657 TCCTAACACTCCAATGTTGCTTT 58.530 39.130 1.46 0.00 42.74 3.51
1491 2961 4.278170 TCCTAACACTCCAATGTTGCTTTG 59.722 41.667 1.46 0.00 42.74 2.77
1492 2962 4.278170 CCTAACACTCCAATGTTGCTTTGA 59.722 41.667 1.46 0.00 42.74 2.69
1493 2963 3.996150 ACACTCCAATGTTGCTTTGAG 57.004 42.857 0.00 0.00 0.00 3.02
1494 2964 3.554934 ACACTCCAATGTTGCTTTGAGA 58.445 40.909 0.00 0.00 0.00 3.27
1495 2965 4.147321 ACACTCCAATGTTGCTTTGAGAT 58.853 39.130 0.00 0.00 0.00 2.75
1496 2966 4.217118 ACACTCCAATGTTGCTTTGAGATC 59.783 41.667 0.00 0.00 0.00 2.75
1497 2967 4.458295 CACTCCAATGTTGCTTTGAGATCT 59.542 41.667 0.00 0.00 0.00 2.75
1498 2968 4.458295 ACTCCAATGTTGCTTTGAGATCTG 59.542 41.667 0.00 0.00 0.00 2.90
1499 2969 4.401022 TCCAATGTTGCTTTGAGATCTGT 58.599 39.130 0.00 0.00 0.00 3.41
1500 2970 4.216902 TCCAATGTTGCTTTGAGATCTGTG 59.783 41.667 0.00 0.00 0.00 3.66
1501 2971 3.844577 ATGTTGCTTTGAGATCTGTGC 57.155 42.857 0.00 0.00 0.00 4.57
1502 2972 2.854963 TGTTGCTTTGAGATCTGTGCT 58.145 42.857 0.00 0.00 0.00 4.40
1503 2973 4.006780 TGTTGCTTTGAGATCTGTGCTA 57.993 40.909 0.00 0.00 0.00 3.49
1504 2974 3.748048 TGTTGCTTTGAGATCTGTGCTAC 59.252 43.478 0.00 6.70 0.00 3.58
1505 2975 3.683365 TGCTTTGAGATCTGTGCTACA 57.317 42.857 0.00 0.00 0.00 2.74
1506 2976 3.329386 TGCTTTGAGATCTGTGCTACAC 58.671 45.455 0.00 0.00 34.56 2.90
1507 2977 3.244181 TGCTTTGAGATCTGTGCTACACA 60.244 43.478 0.00 0.00 42.45 3.72
1508 2978 3.748048 GCTTTGAGATCTGTGCTACACAA 59.252 43.478 0.00 0.00 44.08 3.33
1509 2979 4.377841 GCTTTGAGATCTGTGCTACACAAC 60.378 45.833 0.00 0.00 44.08 3.32
1510 2980 4.607293 TTGAGATCTGTGCTACACAACT 57.393 40.909 0.00 2.36 44.08 3.16
1511 2981 5.722021 TTGAGATCTGTGCTACACAACTA 57.278 39.130 0.00 0.00 44.08 2.24
1512 2982 5.060662 TGAGATCTGTGCTACACAACTAC 57.939 43.478 0.00 0.00 44.08 2.73
1513 2983 4.082190 TGAGATCTGTGCTACACAACTACC 60.082 45.833 0.00 0.00 44.08 3.18
1514 2984 4.090090 AGATCTGTGCTACACAACTACCT 58.910 43.478 0.00 0.00 44.08 3.08
1515 2985 4.528596 AGATCTGTGCTACACAACTACCTT 59.471 41.667 0.00 0.00 44.08 3.50
1516 2986 5.715279 AGATCTGTGCTACACAACTACCTTA 59.285 40.000 0.00 0.00 44.08 2.69
1517 2987 5.995565 TCTGTGCTACACAACTACCTTAT 57.004 39.130 1.64 0.00 44.08 1.73
1518 2988 6.354794 TCTGTGCTACACAACTACCTTATT 57.645 37.500 1.64 0.00 44.08 1.40
1519 2989 7.470935 TCTGTGCTACACAACTACCTTATTA 57.529 36.000 1.64 0.00 44.08 0.98
1520 2990 7.318141 TCTGTGCTACACAACTACCTTATTAC 58.682 38.462 1.64 0.00 44.08 1.89
1521 2991 6.995364 TGTGCTACACAACTACCTTATTACA 58.005 36.000 0.00 0.00 41.69 2.41
1522 2992 7.617225 TGTGCTACACAACTACCTTATTACAT 58.383 34.615 0.00 0.00 41.69 2.29
1523 2993 7.547722 TGTGCTACACAACTACCTTATTACATG 59.452 37.037 0.00 0.00 41.69 3.21
1524 2994 7.011109 GTGCTACACAACTACCTTATTACATGG 59.989 40.741 0.00 0.00 34.08 3.66
1525 2995 7.093245 TGCTACACAACTACCTTATTACATGGA 60.093 37.037 0.00 0.00 0.00 3.41
1526 2996 7.767198 GCTACACAACTACCTTATTACATGGAA 59.233 37.037 0.00 0.00 0.00 3.53
1527 2997 9.832445 CTACACAACTACCTTATTACATGGAAT 57.168 33.333 8.55 8.55 0.00 3.01
1529 2999 9.528489 ACACAACTACCTTATTACATGGAATTT 57.472 29.630 8.85 0.00 0.00 1.82
1563 3033 9.739276 TTTGTTCCTCTCATATAAAACATGTCT 57.261 29.630 0.00 0.00 0.00 3.41
1564 3034 9.739276 TTGTTCCTCTCATATAAAACATGTCTT 57.261 29.630 0.00 0.00 0.00 3.01
1565 3035 9.166173 TGTTCCTCTCATATAAAACATGTCTTG 57.834 33.333 0.00 0.00 0.00 3.02
1566 3036 9.383519 GTTCCTCTCATATAAAACATGTCTTGA 57.616 33.333 0.00 0.00 0.00 3.02
1567 3037 9.958180 TTCCTCTCATATAAAACATGTCTTGAA 57.042 29.630 0.00 0.00 0.00 2.69
1568 3038 9.383519 TCCTCTCATATAAAACATGTCTTGAAC 57.616 33.333 0.00 0.00 0.00 3.18
1569 3039 9.388506 CCTCTCATATAAAACATGTCTTGAACT 57.611 33.333 0.00 0.00 0.00 3.01
1578 3048 8.831715 AAAACATGTCTTGAACTTCAAACTTT 57.168 26.923 0.00 2.89 35.73 2.66
1579 3049 7.816945 AACATGTCTTGAACTTCAAACTTTG 57.183 32.000 0.00 10.13 35.73 2.77
1580 3050 5.807011 ACATGTCTTGAACTTCAAACTTTGC 59.193 36.000 5.72 0.00 35.73 3.68
1581 3051 5.384063 TGTCTTGAACTTCAAACTTTGCA 57.616 34.783 5.72 0.00 35.73 4.08
1582 3052 5.401550 TGTCTTGAACTTCAAACTTTGCAG 58.598 37.500 5.72 0.17 35.73 4.41
1583 3053 5.048083 TGTCTTGAACTTCAAACTTTGCAGT 60.048 36.000 5.72 1.39 38.79 4.40
1584 3054 6.150307 TGTCTTGAACTTCAAACTTTGCAGTA 59.850 34.615 7.16 0.00 36.12 2.74
1585 3055 7.148086 TGTCTTGAACTTCAAACTTTGCAGTAT 60.148 33.333 7.16 0.00 36.12 2.12
1586 3056 8.342634 GTCTTGAACTTCAAACTTTGCAGTATA 58.657 33.333 7.16 0.00 36.12 1.47
1587 3057 8.898761 TCTTGAACTTCAAACTTTGCAGTATAA 58.101 29.630 7.16 5.52 36.12 0.98
1588 3058 8.850454 TTGAACTTCAAACTTTGCAGTATAAC 57.150 30.769 7.16 2.19 36.12 1.89
1589 3059 7.990917 TGAACTTCAAACTTTGCAGTATAACA 58.009 30.769 7.16 4.22 36.12 2.41
1590 3060 8.629158 TGAACTTCAAACTTTGCAGTATAACAT 58.371 29.630 7.16 0.00 36.12 2.71
1593 3063 9.893305 ACTTCAAACTTTGCAGTATAACATAAC 57.107 29.630 5.14 0.00 35.39 1.89
1733 3203 9.533831 AAATCTGTAAGTTTTATCCCACATTCT 57.466 29.630 0.00 0.00 34.30 2.40
1735 3205 9.614792 ATCTGTAAGTTTTATCCCACATTCTAC 57.385 33.333 0.00 0.00 33.76 2.59
1736 3206 8.598916 TCTGTAAGTTTTATCCCACATTCTACA 58.401 33.333 0.00 0.00 33.76 2.74
1737 3207 9.396022 CTGTAAGTTTTATCCCACATTCTACAT 57.604 33.333 0.00 0.00 0.00 2.29
1744 3214 8.677148 TTTATCCCACATTCTACATAGAAAGC 57.323 34.615 5.48 0.00 44.63 3.51
1745 3215 5.957771 TCCCACATTCTACATAGAAAGCT 57.042 39.130 5.48 0.00 44.63 3.74
1746 3216 6.313519 TCCCACATTCTACATAGAAAGCTT 57.686 37.500 5.48 0.00 44.63 3.74
1747 3217 6.721318 TCCCACATTCTACATAGAAAGCTTT 58.279 36.000 12.53 12.53 44.63 3.51
1748 3218 6.599244 TCCCACATTCTACATAGAAAGCTTTG 59.401 38.462 18.30 5.25 44.63 2.77
1749 3219 6.375455 CCCACATTCTACATAGAAAGCTTTGT 59.625 38.462 18.30 15.90 44.63 2.83
1750 3220 7.094205 CCCACATTCTACATAGAAAGCTTTGTT 60.094 37.037 18.30 7.23 44.63 2.83
1751 3221 7.752239 CCACATTCTACATAGAAAGCTTTGTTG 59.248 37.037 18.30 15.03 44.63 3.33
1752 3222 8.292448 CACATTCTACATAGAAAGCTTTGTTGT 58.708 33.333 18.30 19.36 44.63 3.32
1753 3223 8.292448 ACATTCTACATAGAAAGCTTTGTTGTG 58.708 33.333 18.30 16.43 44.63 3.33
1754 3224 6.241207 TCTACATAGAAAGCTTTGTTGTGC 57.759 37.500 18.30 0.25 37.47 4.57
1755 3225 5.997746 TCTACATAGAAAGCTTTGTTGTGCT 59.002 36.000 18.30 8.71 41.82 4.40
1756 3226 4.863491 ACATAGAAAGCTTTGTTGTGCTG 58.137 39.130 18.30 8.38 39.71 4.41
1757 3227 2.214387 AGAAAGCTTTGTTGTGCTGC 57.786 45.000 18.30 0.00 39.71 5.25
1758 3228 1.477700 AGAAAGCTTTGTTGTGCTGCA 59.522 42.857 18.30 0.00 39.71 4.41
1759 3229 2.094078 AGAAAGCTTTGTTGTGCTGCAA 60.094 40.909 18.30 0.00 39.71 4.08
1760 3230 2.383368 AAGCTTTGTTGTGCTGCAAA 57.617 40.000 2.77 0.00 39.71 3.68
1764 3234 3.644805 CTTTGTTGTGCTGCAAAGTTG 57.355 42.857 2.77 0.00 43.69 3.16
1765 3235 3.252400 CTTTGTTGTGCTGCAAAGTTGA 58.748 40.909 2.77 0.00 43.69 3.18
1766 3236 3.309961 TTGTTGTGCTGCAAAGTTGAA 57.690 38.095 2.77 0.00 39.03 2.69
1767 3237 3.309961 TGTTGTGCTGCAAAGTTGAAA 57.690 38.095 2.77 0.00 39.03 2.69
1768 3238 3.252400 TGTTGTGCTGCAAAGTTGAAAG 58.748 40.909 2.77 0.00 39.03 2.62
1769 3239 3.253230 GTTGTGCTGCAAAGTTGAAAGT 58.747 40.909 2.77 0.00 39.03 2.66
1770 3240 4.082517 TGTTGTGCTGCAAAGTTGAAAGTA 60.083 37.500 2.77 0.00 39.03 2.24
1771 3241 4.027572 TGTGCTGCAAAGTTGAAAGTAC 57.972 40.909 2.77 2.52 33.16 2.73
1772 3242 3.441922 TGTGCTGCAAAGTTGAAAGTACA 59.558 39.130 2.77 11.39 37.00 2.90
1773 3243 4.082517 TGTGCTGCAAAGTTGAAAGTACAA 60.083 37.500 2.77 0.00 36.69 2.41
1774 3244 4.862018 GTGCTGCAAAGTTGAAAGTACAAA 59.138 37.500 2.77 0.00 32.96 2.83
1775 3245 5.519927 GTGCTGCAAAGTTGAAAGTACAAAT 59.480 36.000 2.77 0.00 32.96 2.32
1776 3246 6.695278 GTGCTGCAAAGTTGAAAGTACAAATA 59.305 34.615 2.77 0.00 32.96 1.40
1777 3247 6.695278 TGCTGCAAAGTTGAAAGTACAAATAC 59.305 34.615 0.00 0.00 0.00 1.89
1778 3248 6.695278 GCTGCAAAGTTGAAAGTACAAATACA 59.305 34.615 0.00 0.00 33.30 2.29
1779 3249 7.382218 GCTGCAAAGTTGAAAGTACAAATACAT 59.618 33.333 0.00 0.00 33.30 2.29
1780 3250 8.572828 TGCAAAGTTGAAAGTACAAATACATG 57.427 30.769 0.00 0.00 33.30 3.21
1781 3251 8.194104 TGCAAAGTTGAAAGTACAAATACATGT 58.806 29.630 2.69 2.69 37.32 3.21
1782 3252 9.030301 GCAAAGTTGAAAGTACAAATACATGTT 57.970 29.630 2.30 0.00 34.75 2.71
1826 3296 9.696917 AAAAGAGAAAATTATTTGCACGAATCT 57.303 25.926 0.00 0.00 0.00 2.40
1827 3297 9.696917 AAAGAGAAAATTATTTGCACGAATCTT 57.303 25.926 0.00 0.00 0.00 2.40
1828 3298 8.679288 AGAGAAAATTATTTGCACGAATCTTG 57.321 30.769 0.00 0.00 0.00 3.02
1829 3299 8.514594 AGAGAAAATTATTTGCACGAATCTTGA 58.485 29.630 0.00 0.00 0.00 3.02
1830 3300 9.294030 GAGAAAATTATTTGCACGAATCTTGAT 57.706 29.630 0.00 0.00 0.00 2.57
1831 3301 9.079833 AGAAAATTATTTGCACGAATCTTGATG 57.920 29.630 0.00 0.00 0.00 3.07
1832 3302 6.817270 AATTATTTGCACGAATCTTGATGC 57.183 33.333 0.00 0.00 38.59 3.91
1833 3303 3.853831 ATTTGCACGAATCTTGATGCA 57.146 38.095 0.00 0.00 45.94 3.96
1835 3305 2.097680 TGCACGAATCTTGATGCAGA 57.902 45.000 0.00 0.00 42.92 4.26
1836 3306 2.425539 TGCACGAATCTTGATGCAGAA 58.574 42.857 0.00 0.00 42.92 3.02
1837 3307 2.813172 TGCACGAATCTTGATGCAGAAA 59.187 40.909 0.00 0.00 42.92 2.52
1838 3308 3.441222 TGCACGAATCTTGATGCAGAAAT 59.559 39.130 0.00 0.00 42.92 2.17
1839 3309 3.789756 GCACGAATCTTGATGCAGAAATG 59.210 43.478 0.00 0.00 38.00 2.32
1840 3310 4.437794 GCACGAATCTTGATGCAGAAATGA 60.438 41.667 0.00 0.00 38.00 2.57
1841 3311 5.263948 CACGAATCTTGATGCAGAAATGAG 58.736 41.667 0.00 0.00 0.00 2.90
1842 3312 4.940046 ACGAATCTTGATGCAGAAATGAGT 59.060 37.500 0.00 0.00 0.00 3.41
1843 3313 5.163784 ACGAATCTTGATGCAGAAATGAGTG 60.164 40.000 0.00 0.00 0.00 3.51
1844 3314 5.578005 AATCTTGATGCAGAAATGAGTGG 57.422 39.130 0.00 0.00 0.00 4.00
1845 3315 4.025040 TCTTGATGCAGAAATGAGTGGT 57.975 40.909 0.00 0.00 0.00 4.16
1846 3316 4.401022 TCTTGATGCAGAAATGAGTGGTT 58.599 39.130 0.00 0.00 0.00 3.67
1847 3317 4.216902 TCTTGATGCAGAAATGAGTGGTTG 59.783 41.667 0.00 0.00 0.00 3.77
1848 3318 2.821378 TGATGCAGAAATGAGTGGTTGG 59.179 45.455 0.00 0.00 0.00 3.77
1849 3319 2.655090 TGCAGAAATGAGTGGTTGGA 57.345 45.000 0.00 0.00 0.00 3.53
1850 3320 3.159213 TGCAGAAATGAGTGGTTGGAT 57.841 42.857 0.00 0.00 0.00 3.41
1851 3321 4.299586 TGCAGAAATGAGTGGTTGGATA 57.700 40.909 0.00 0.00 0.00 2.59
1852 3322 4.661222 TGCAGAAATGAGTGGTTGGATAA 58.339 39.130 0.00 0.00 0.00 1.75
1853 3323 4.701651 TGCAGAAATGAGTGGTTGGATAAG 59.298 41.667 0.00 0.00 0.00 1.73
1854 3324 4.096984 GCAGAAATGAGTGGTTGGATAAGG 59.903 45.833 0.00 0.00 0.00 2.69
1855 3325 5.500234 CAGAAATGAGTGGTTGGATAAGGA 58.500 41.667 0.00 0.00 0.00 3.36
1856 3326 5.587844 CAGAAATGAGTGGTTGGATAAGGAG 59.412 44.000 0.00 0.00 0.00 3.69
1857 3327 5.251700 AGAAATGAGTGGTTGGATAAGGAGT 59.748 40.000 0.00 0.00 0.00 3.85
1858 3328 6.443849 AGAAATGAGTGGTTGGATAAGGAGTA 59.556 38.462 0.00 0.00 0.00 2.59
1859 3329 5.615925 ATGAGTGGTTGGATAAGGAGTAC 57.384 43.478 0.00 0.00 0.00 2.73
1860 3330 3.773119 TGAGTGGTTGGATAAGGAGTACC 59.227 47.826 0.00 0.00 0.00 3.34
1861 3331 3.113043 AGTGGTTGGATAAGGAGTACCC 58.887 50.000 0.00 0.00 36.73 3.69
1862 3332 2.112998 TGGTTGGATAAGGAGTACCCG 58.887 52.381 0.00 0.00 40.87 5.28
1863 3333 1.415289 GGTTGGATAAGGAGTACCCGG 59.585 57.143 0.00 0.00 40.87 5.73
1864 3334 1.415289 GTTGGATAAGGAGTACCCGGG 59.585 57.143 22.25 22.25 40.87 5.73
1865 3335 0.638292 TGGATAAGGAGTACCCGGGT 59.362 55.000 32.66 32.66 40.87 5.28
1866 3336 1.046204 GGATAAGGAGTACCCGGGTG 58.954 60.000 36.97 6.22 40.87 4.61
1867 3337 0.391966 GATAAGGAGTACCCGGGTGC 59.608 60.000 36.97 34.59 40.87 5.01
1868 3338 0.325860 ATAAGGAGTACCCGGGTGCA 60.326 55.000 38.49 21.38 40.87 4.57
1869 3339 0.325860 TAAGGAGTACCCGGGTGCAT 60.326 55.000 38.49 25.22 40.87 3.96
1870 3340 0.325860 AAGGAGTACCCGGGTGCATA 60.326 55.000 38.49 17.40 40.87 3.14
1871 3341 0.759436 AGGAGTACCCGGGTGCATAG 60.759 60.000 38.49 7.31 40.87 2.23
1872 3342 1.746517 GAGTACCCGGGTGCATAGG 59.253 63.158 38.49 6.51 33.14 2.57
1873 3343 2.110420 GTACCCGGGTGCATAGGC 59.890 66.667 36.97 12.77 41.68 3.93
1874 3344 2.041301 TACCCGGGTGCATAGGCT 60.041 61.111 36.97 8.21 41.91 4.58
1875 3345 2.138179 TACCCGGGTGCATAGGCTC 61.138 63.158 36.97 0.00 41.91 4.70
1876 3346 2.599139 TACCCGGGTGCATAGGCTCT 62.599 60.000 36.97 6.74 41.91 4.09
1877 3347 1.837051 CCCGGGTGCATAGGCTCTA 60.837 63.158 14.18 0.00 41.91 2.43
1878 3348 1.407656 CCCGGGTGCATAGGCTCTAA 61.408 60.000 14.18 0.00 41.91 2.10
1879 3349 0.468226 CCGGGTGCATAGGCTCTAAA 59.532 55.000 0.00 0.00 41.91 1.85
1880 3350 1.134220 CCGGGTGCATAGGCTCTAAAA 60.134 52.381 0.00 0.00 41.91 1.52
1881 3351 1.940613 CGGGTGCATAGGCTCTAAAAC 59.059 52.381 0.00 0.00 41.91 2.43
1882 3352 2.679639 CGGGTGCATAGGCTCTAAAACA 60.680 50.000 0.00 0.00 41.91 2.83
1883 3353 3.555966 GGGTGCATAGGCTCTAAAACAT 58.444 45.455 0.00 0.00 41.91 2.71
1884 3354 3.316308 GGGTGCATAGGCTCTAAAACATG 59.684 47.826 0.00 0.00 41.91 3.21
1885 3355 3.947834 GGTGCATAGGCTCTAAAACATGT 59.052 43.478 0.00 0.00 41.91 3.21
1886 3356 4.399303 GGTGCATAGGCTCTAAAACATGTT 59.601 41.667 4.92 4.92 41.91 2.71
1887 3357 5.105756 GGTGCATAGGCTCTAAAACATGTTT 60.106 40.000 18.13 18.13 41.91 2.83
1888 3358 6.389906 GTGCATAGGCTCTAAAACATGTTTT 58.610 36.000 32.63 32.63 42.11 2.43
1889 3359 6.528072 GTGCATAGGCTCTAAAACATGTTTTC 59.472 38.462 33.71 21.47 40.89 2.29
2153 3631 3.712907 CCGTTCCACATCCCCGGT 61.713 66.667 0.00 0.00 34.10 5.28
2212 3690 0.526211 TCACAGTACATCGCGCTCTT 59.474 50.000 5.56 0.00 0.00 2.85
2342 3820 1.876799 AGCATCACGGATCTCTACGAG 59.123 52.381 0.00 0.00 0.00 4.18
2355 3833 2.594119 CTACGAGAAGGCGGTGTCGG 62.594 65.000 13.57 0.00 38.53 4.79
2495 3973 0.768221 TCACCAGGGCTTTCTCAGGT 60.768 55.000 0.00 0.00 0.00 4.00
2555 4034 2.910479 TCCATCGGCGCGGTCTAT 60.910 61.111 15.06 0.00 0.00 1.98
2659 4138 3.284449 AAGCAAACCACCGCGTCC 61.284 61.111 4.92 0.00 0.00 4.79
2959 4445 0.899019 GGTGGGTGTGTTTTGGTTGT 59.101 50.000 0.00 0.00 0.00 3.32
2998 4484 3.584834 GTTTCGTTCATGAAATTGGGGG 58.415 45.455 10.35 0.00 39.80 5.40
3005 4491 3.914771 TCATGAAATTGGGGGAAGGATC 58.085 45.455 0.00 0.00 0.00 3.36
3274 5095 7.768120 AGTTACATGATTCTCAGACAGGATTTC 59.232 37.037 0.00 0.00 0.00 2.17
3279 5100 6.479006 TGATTCTCAGACAGGATTTCACAAT 58.521 36.000 0.00 0.00 0.00 2.71
3383 5318 2.494073 ACAAGTCTCGGAGATCTTCACC 59.506 50.000 11.46 0.00 33.89 4.02
3385 5320 1.006043 AGTCTCGGAGATCTTCACCCA 59.994 52.381 11.46 0.00 33.89 4.51
3390 5325 0.908198 GGAGATCTTCACCCAGCAGT 59.092 55.000 0.00 0.00 0.00 4.40
3393 5328 1.834263 AGATCTTCACCCAGCAGTACC 59.166 52.381 0.00 0.00 0.00 3.34
3398 5335 3.585289 TCTTCACCCAGCAGTACCAATTA 59.415 43.478 0.00 0.00 0.00 1.40
3733 5860 8.772705 CATTTGGCATAAAAGCTAAAGAAAACA 58.227 29.630 4.00 0.00 45.88 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 36 5.627135 TCGTTCCTCCTTTTGACCTAATTT 58.373 37.500 0.00 0.00 0.00 1.82
94 97 4.016444 TCCAGGAATTCAGTACCAAATGC 58.984 43.478 7.93 0.00 0.00 3.56
267 273 1.323271 GGAGCACTCCCATGTCGAGA 61.323 60.000 12.66 0.00 43.94 4.04
268 274 1.142748 GGAGCACTCCCATGTCGAG 59.857 63.158 5.30 5.68 43.94 4.04
310 350 9.460019 TCATCAAACTATTTATCAACCATGTCA 57.540 29.630 0.00 0.00 0.00 3.58
328 368 4.860072 AGTTTTCTTCGGCTTCATCAAAC 58.140 39.130 0.00 0.00 0.00 2.93
426 466 2.235016 CCCCTGACCGAATCACAAAAA 58.765 47.619 0.00 0.00 32.37 1.94
458 498 7.038048 TGTGCTCAGTACTTCATAGATTCTTG 58.962 38.462 0.00 0.00 0.00 3.02
472 512 5.567138 AGCCATATTTTTGTGCTCAGTAC 57.433 39.130 0.00 0.00 0.00 2.73
488 528 4.023098 ATGCCCCCATGAGCCATA 57.977 55.556 0.00 0.00 0.00 2.74
516 556 4.601315 TCGACACAACACGACTCG 57.399 55.556 0.00 0.00 33.62 4.18
520 560 2.026445 CCGGTCGACACAACACGA 59.974 61.111 18.91 0.00 36.18 4.35
563 604 1.136305 GCCCGTATAGCAGTTGAGTCA 59.864 52.381 0.00 0.00 0.00 3.41
601 642 2.289882 GCCTAGCAGATATGACATGCCA 60.290 50.000 0.00 0.00 40.89 4.92
608 649 4.478206 GCCATTAGCCTAGCAGATATGA 57.522 45.455 0.00 0.00 34.35 2.15
864 2333 1.274167 TGTGCGTTAGGGTTAGGTGAG 59.726 52.381 0.00 0.00 0.00 3.51
1080 2549 2.930019 CCAGGACCAGGAGGCACA 60.930 66.667 0.00 0.00 39.06 4.57
1225 2694 2.823593 CGCCGCATGGATGGACAA 60.824 61.111 0.00 0.00 37.49 3.18
1392 2862 4.429212 CGATCGACCCACACGCCA 62.429 66.667 10.26 0.00 0.00 5.69
1418 2888 3.570638 CTGCATTCGGCCTGAGCG 61.571 66.667 0.00 0.00 43.89 5.03
1419 2889 1.099879 AATCTGCATTCGGCCTGAGC 61.100 55.000 0.00 0.00 43.89 4.26
1420 2890 0.942962 GAATCTGCATTCGGCCTGAG 59.057 55.000 0.00 0.00 43.89 3.35
1421 2891 0.543277 AGAATCTGCATTCGGCCTGA 59.457 50.000 0.00 0.00 43.05 3.86
1422 2892 0.661552 CAGAATCTGCATTCGGCCTG 59.338 55.000 0.00 0.00 43.05 4.85
1423 2893 0.254178 ACAGAATCTGCATTCGGCCT 59.746 50.000 10.62 0.00 43.05 5.19
1424 2894 0.379669 CACAGAATCTGCATTCGGCC 59.620 55.000 10.62 0.00 43.05 6.13
1425 2895 1.329906 CTCACAGAATCTGCATTCGGC 59.670 52.381 10.62 0.00 43.05 5.54
1426 2896 1.329906 GCTCACAGAATCTGCATTCGG 59.670 52.381 10.62 0.00 43.05 4.30
1427 2897 2.277969 AGCTCACAGAATCTGCATTCG 58.722 47.619 10.62 0.00 43.05 3.34
1428 2898 5.749620 CATAAGCTCACAGAATCTGCATTC 58.250 41.667 10.62 0.00 39.10 2.67
1429 2899 4.036498 GCATAAGCTCACAGAATCTGCATT 59.964 41.667 10.62 1.24 37.91 3.56
1430 2900 3.564644 GCATAAGCTCACAGAATCTGCAT 59.435 43.478 10.62 0.00 37.91 3.96
1431 2901 2.941064 GCATAAGCTCACAGAATCTGCA 59.059 45.455 10.62 0.00 37.91 4.41
1432 2902 2.941064 TGCATAAGCTCACAGAATCTGC 59.059 45.455 10.62 0.00 42.74 4.26
1433 2903 3.311871 GGTGCATAAGCTCACAGAATCTG 59.688 47.826 8.98 8.98 42.74 2.90
1434 2904 3.539604 GGTGCATAAGCTCACAGAATCT 58.460 45.455 5.72 0.00 42.74 2.40
1435 2905 2.615912 GGGTGCATAAGCTCACAGAATC 59.384 50.000 5.72 0.00 42.74 2.52
1436 2906 2.648059 GGGTGCATAAGCTCACAGAAT 58.352 47.619 5.72 0.00 42.74 2.40
1437 2907 1.675714 CGGGTGCATAAGCTCACAGAA 60.676 52.381 5.72 0.00 42.74 3.02
1438 2908 0.108186 CGGGTGCATAAGCTCACAGA 60.108 55.000 5.72 0.00 42.74 3.41
1439 2909 1.091771 CCGGGTGCATAAGCTCACAG 61.092 60.000 5.72 0.00 42.74 3.66
1440 2910 1.078497 CCGGGTGCATAAGCTCACA 60.078 57.895 5.72 0.00 42.74 3.58
1441 2911 1.819632 CCCGGGTGCATAAGCTCAC 60.820 63.158 14.18 0.00 42.74 3.51
1442 2912 2.589540 CCCGGGTGCATAAGCTCA 59.410 61.111 14.18 0.00 42.74 4.26
1443 2913 2.902343 GCCCGGGTGCATAAGCTC 60.902 66.667 24.63 0.00 42.74 4.09
1444 2914 4.506255 GGCCCGGGTGCATAAGCT 62.506 66.667 24.63 0.00 42.74 3.74
1445 2915 4.506255 AGGCCCGGGTGCATAAGC 62.506 66.667 24.63 4.14 42.57 3.09
1446 2916 2.203209 GAGGCCCGGGTGCATAAG 60.203 66.667 24.63 0.00 0.00 1.73
1447 2917 3.012119 TGAGGCCCGGGTGCATAA 61.012 61.111 24.63 0.00 0.00 1.90
1448 2918 2.882403 TAGTGAGGCCCGGGTGCATA 62.882 60.000 24.63 5.26 0.00 3.14
1451 2921 3.462199 GATAGTGAGGCCCGGGTGC 62.462 68.421 24.63 12.43 0.00 5.01
1452 2922 2.808206 GGATAGTGAGGCCCGGGTG 61.808 68.421 24.63 0.00 0.00 4.61
1453 2923 1.661990 TAGGATAGTGAGGCCCGGGT 61.662 60.000 24.63 1.57 0.00 5.28
1454 2924 0.471211 TTAGGATAGTGAGGCCCGGG 60.471 60.000 19.09 19.09 0.00 5.73
1455 2925 0.680061 GTTAGGATAGTGAGGCCCGG 59.320 60.000 0.00 0.00 0.00 5.73
1456 2926 1.068741 GTGTTAGGATAGTGAGGCCCG 59.931 57.143 0.00 0.00 0.00 6.13
1457 2927 2.365941 GAGTGTTAGGATAGTGAGGCCC 59.634 54.545 0.00 0.00 0.00 5.80
1458 2928 2.365941 GGAGTGTTAGGATAGTGAGGCC 59.634 54.545 0.00 0.00 0.00 5.19
1459 2929 3.031736 TGGAGTGTTAGGATAGTGAGGC 58.968 50.000 0.00 0.00 0.00 4.70
1460 2930 5.129485 ACATTGGAGTGTTAGGATAGTGAGG 59.871 44.000 0.00 0.00 0.00 3.86
1461 2931 6.227298 ACATTGGAGTGTTAGGATAGTGAG 57.773 41.667 0.00 0.00 0.00 3.51
1462 2932 6.406370 CAACATTGGAGTGTTAGGATAGTGA 58.594 40.000 0.00 0.00 40.17 3.41
1463 2933 5.065218 GCAACATTGGAGTGTTAGGATAGTG 59.935 44.000 0.00 0.00 40.17 2.74
1464 2934 5.045578 AGCAACATTGGAGTGTTAGGATAGT 60.046 40.000 0.00 0.00 40.17 2.12
1465 2935 5.431765 AGCAACATTGGAGTGTTAGGATAG 58.568 41.667 0.00 0.00 40.17 2.08
1466 2936 5.435686 AGCAACATTGGAGTGTTAGGATA 57.564 39.130 0.00 0.00 40.17 2.59
1467 2937 4.307032 AGCAACATTGGAGTGTTAGGAT 57.693 40.909 0.00 0.00 40.17 3.24
1468 2938 3.788227 AGCAACATTGGAGTGTTAGGA 57.212 42.857 0.00 0.00 40.17 2.94
1469 2939 4.278170 TCAAAGCAACATTGGAGTGTTAGG 59.722 41.667 0.00 0.00 40.17 2.69
1470 2940 5.239306 TCTCAAAGCAACATTGGAGTGTTAG 59.761 40.000 0.00 0.00 40.17 2.34
1471 2941 5.129634 TCTCAAAGCAACATTGGAGTGTTA 58.870 37.500 0.00 0.00 40.17 2.41
1472 2942 3.953612 TCTCAAAGCAACATTGGAGTGTT 59.046 39.130 0.00 0.00 42.75 3.32
1473 2943 3.554934 TCTCAAAGCAACATTGGAGTGT 58.445 40.909 0.00 0.00 0.00 3.55
1474 2944 4.458295 AGATCTCAAAGCAACATTGGAGTG 59.542 41.667 0.00 0.00 0.00 3.51
1475 2945 4.458295 CAGATCTCAAAGCAACATTGGAGT 59.542 41.667 0.00 0.00 0.00 3.85
1476 2946 4.458295 ACAGATCTCAAAGCAACATTGGAG 59.542 41.667 0.00 0.00 0.00 3.86
1477 2947 4.216902 CACAGATCTCAAAGCAACATTGGA 59.783 41.667 0.00 0.00 0.00 3.53
1478 2948 4.482386 CACAGATCTCAAAGCAACATTGG 58.518 43.478 0.00 0.00 0.00 3.16
1479 2949 3.918591 GCACAGATCTCAAAGCAACATTG 59.081 43.478 0.00 0.00 0.00 2.82
1480 2950 3.825014 AGCACAGATCTCAAAGCAACATT 59.175 39.130 0.00 0.00 0.00 2.71
1481 2951 3.418995 AGCACAGATCTCAAAGCAACAT 58.581 40.909 0.00 0.00 0.00 2.71
1482 2952 2.854963 AGCACAGATCTCAAAGCAACA 58.145 42.857 0.00 0.00 0.00 3.33
1483 2953 3.748048 TGTAGCACAGATCTCAAAGCAAC 59.252 43.478 0.00 0.00 0.00 4.17
1484 2954 3.748048 GTGTAGCACAGATCTCAAAGCAA 59.252 43.478 0.00 0.00 34.08 3.91
1485 2955 3.244181 TGTGTAGCACAGATCTCAAAGCA 60.244 43.478 0.00 0.00 39.62 3.91
1486 2956 3.329386 TGTGTAGCACAGATCTCAAAGC 58.671 45.455 0.00 0.00 39.62 3.51
1487 2957 4.993584 AGTTGTGTAGCACAGATCTCAAAG 59.006 41.667 0.00 0.00 45.39 2.77
1488 2958 4.960938 AGTTGTGTAGCACAGATCTCAAA 58.039 39.130 0.00 0.00 45.39 2.69
1489 2959 4.607293 AGTTGTGTAGCACAGATCTCAA 57.393 40.909 0.00 0.00 45.39 3.02
1490 2960 4.082190 GGTAGTTGTGTAGCACAGATCTCA 60.082 45.833 0.00 0.00 45.39 3.27
1491 2961 4.158764 AGGTAGTTGTGTAGCACAGATCTC 59.841 45.833 0.00 0.00 45.39 2.75
1492 2962 4.090090 AGGTAGTTGTGTAGCACAGATCT 58.910 43.478 2.17 0.00 45.39 2.75
1493 2963 4.457834 AGGTAGTTGTGTAGCACAGATC 57.542 45.455 2.17 0.00 45.39 2.75
1494 2964 4.891992 AAGGTAGTTGTGTAGCACAGAT 57.108 40.909 2.17 0.00 45.39 2.90
1495 2965 5.995565 ATAAGGTAGTTGTGTAGCACAGA 57.004 39.130 2.17 0.00 45.39 3.41
1496 2966 7.094631 TGTAATAAGGTAGTTGTGTAGCACAG 58.905 38.462 2.17 0.00 45.39 3.66
1497 2967 6.995364 TGTAATAAGGTAGTTGTGTAGCACA 58.005 36.000 0.00 0.00 43.02 4.57
1498 2968 7.011109 CCATGTAATAAGGTAGTTGTGTAGCAC 59.989 40.741 0.00 0.00 34.56 4.40
1499 2969 7.045416 CCATGTAATAAGGTAGTTGTGTAGCA 58.955 38.462 0.00 0.00 0.00 3.49
1500 2970 7.270047 TCCATGTAATAAGGTAGTTGTGTAGC 58.730 38.462 0.00 0.00 0.00 3.58
1501 2971 9.832445 ATTCCATGTAATAAGGTAGTTGTGTAG 57.168 33.333 0.00 0.00 0.00 2.74
1503 2973 9.528489 AAATTCCATGTAATAAGGTAGTTGTGT 57.472 29.630 0.00 0.00 0.00 3.72
1537 3007 9.739276 AGACATGTTTTATATGAGAGGAACAAA 57.261 29.630 0.00 0.00 31.69 2.83
1538 3008 9.739276 AAGACATGTTTTATATGAGAGGAACAA 57.261 29.630 0.00 0.00 31.69 2.83
1539 3009 9.166173 CAAGACATGTTTTATATGAGAGGAACA 57.834 33.333 0.00 0.00 0.00 3.18
1540 3010 9.383519 TCAAGACATGTTTTATATGAGAGGAAC 57.616 33.333 0.00 0.00 0.00 3.62
1541 3011 9.958180 TTCAAGACATGTTTTATATGAGAGGAA 57.042 29.630 0.00 0.00 0.00 3.36
1542 3012 9.383519 GTTCAAGACATGTTTTATATGAGAGGA 57.616 33.333 0.00 0.00 0.00 3.71
1543 3013 9.388506 AGTTCAAGACATGTTTTATATGAGAGG 57.611 33.333 0.00 0.00 0.00 3.69
1552 3022 9.921637 AAAGTTTGAAGTTCAAGACATGTTTTA 57.078 25.926 17.36 0.00 37.70 1.52
1553 3023 8.711457 CAAAGTTTGAAGTTCAAGACATGTTTT 58.289 29.630 17.36 11.69 37.70 2.43
1554 3024 7.148590 GCAAAGTTTGAAGTTCAAGACATGTTT 60.149 33.333 19.82 11.95 37.70 2.83
1555 3025 6.311200 GCAAAGTTTGAAGTTCAAGACATGTT 59.689 34.615 19.82 11.21 37.70 2.71
1556 3026 5.807011 GCAAAGTTTGAAGTTCAAGACATGT 59.193 36.000 19.82 0.00 37.70 3.21
1557 3027 5.806502 TGCAAAGTTTGAAGTTCAAGACATG 59.193 36.000 19.82 18.31 37.70 3.21
1558 3028 5.964758 TGCAAAGTTTGAAGTTCAAGACAT 58.035 33.333 19.82 9.69 37.70 3.06
1559 3029 5.384063 TGCAAAGTTTGAAGTTCAAGACA 57.616 34.783 19.82 8.69 37.70 3.41
1560 3030 5.938883 CTGCAAAGTTTGAAGTTCAAGAC 57.061 39.130 19.82 16.90 37.70 3.01
1707 3177 9.533831 AGAATGTGGGATAAAACTTACAGATTT 57.466 29.630 0.00 0.00 0.00 2.17
1709 3179 9.614792 GTAGAATGTGGGATAAAACTTACAGAT 57.385 33.333 0.00 0.00 0.00 2.90
1710 3180 8.598916 TGTAGAATGTGGGATAAAACTTACAGA 58.401 33.333 0.00 0.00 0.00 3.41
1711 3181 8.786826 TGTAGAATGTGGGATAAAACTTACAG 57.213 34.615 0.00 0.00 0.00 2.74
1718 3188 9.120538 GCTTTCTATGTAGAATGTGGGATAAAA 57.879 33.333 13.77 0.00 41.52 1.52
1719 3189 8.494433 AGCTTTCTATGTAGAATGTGGGATAAA 58.506 33.333 13.77 0.00 41.52 1.40
1720 3190 8.034313 AGCTTTCTATGTAGAATGTGGGATAA 57.966 34.615 13.77 0.00 41.52 1.75
1721 3191 7.618019 AGCTTTCTATGTAGAATGTGGGATA 57.382 36.000 13.77 0.00 41.52 2.59
1722 3192 6.506538 AGCTTTCTATGTAGAATGTGGGAT 57.493 37.500 13.77 0.00 41.52 3.85
1723 3193 5.957771 AGCTTTCTATGTAGAATGTGGGA 57.042 39.130 13.77 0.00 41.52 4.37
1724 3194 6.375455 ACAAAGCTTTCTATGTAGAATGTGGG 59.625 38.462 9.23 0.00 41.52 4.61
1725 3195 7.383102 ACAAAGCTTTCTATGTAGAATGTGG 57.617 36.000 9.23 0.00 41.52 4.17
1726 3196 8.292448 ACAACAAAGCTTTCTATGTAGAATGTG 58.708 33.333 9.23 2.02 41.52 3.21
1727 3197 8.292448 CACAACAAAGCTTTCTATGTAGAATGT 58.708 33.333 9.23 3.70 41.52 2.71
1728 3198 7.272084 GCACAACAAAGCTTTCTATGTAGAATG 59.728 37.037 9.23 3.07 41.52 2.67
1729 3199 7.175641 AGCACAACAAAGCTTTCTATGTAGAAT 59.824 33.333 9.23 0.00 41.52 2.40
1730 3200 6.486657 AGCACAACAAAGCTTTCTATGTAGAA 59.513 34.615 9.23 0.00 38.01 2.10
1731 3201 5.997746 AGCACAACAAAGCTTTCTATGTAGA 59.002 36.000 9.23 0.00 38.01 2.59
1732 3202 6.082338 CAGCACAACAAAGCTTTCTATGTAG 58.918 40.000 9.23 10.01 39.50 2.74
1733 3203 5.562696 GCAGCACAACAAAGCTTTCTATGTA 60.563 40.000 9.23 0.00 39.50 2.29
1734 3204 4.794003 GCAGCACAACAAAGCTTTCTATGT 60.794 41.667 9.23 11.49 39.50 2.29
1735 3205 3.671928 GCAGCACAACAAAGCTTTCTATG 59.328 43.478 9.23 10.85 39.50 2.23
1736 3206 3.318839 TGCAGCACAACAAAGCTTTCTAT 59.681 39.130 9.23 0.00 39.50 1.98
1737 3207 2.687425 TGCAGCACAACAAAGCTTTCTA 59.313 40.909 9.23 0.00 39.50 2.10
1738 3208 1.477700 TGCAGCACAACAAAGCTTTCT 59.522 42.857 9.23 0.00 39.50 2.52
1739 3209 1.925229 TGCAGCACAACAAAGCTTTC 58.075 45.000 9.23 0.00 39.50 2.62
1740 3210 2.383368 TTGCAGCACAACAAAGCTTT 57.617 40.000 5.69 5.69 39.50 3.51
1741 3211 2.273557 CTTTGCAGCACAACAAAGCTT 58.726 42.857 0.00 0.00 44.32 3.74
1742 3212 1.930567 CTTTGCAGCACAACAAAGCT 58.069 45.000 0.00 0.00 44.32 3.74
1745 3215 3.309961 TCAACTTTGCAGCACAACAAA 57.690 38.095 0.00 0.00 38.23 2.83
1746 3216 3.309961 TTCAACTTTGCAGCACAACAA 57.690 38.095 0.00 0.00 38.23 2.83
1747 3217 3.252400 CTTTCAACTTTGCAGCACAACA 58.748 40.909 0.00 0.00 38.23 3.33
1748 3218 3.253230 ACTTTCAACTTTGCAGCACAAC 58.747 40.909 0.00 0.00 38.23 3.32
1749 3219 3.591196 ACTTTCAACTTTGCAGCACAA 57.409 38.095 0.00 0.00 36.13 3.33
1750 3220 3.441922 TGTACTTTCAACTTTGCAGCACA 59.558 39.130 0.00 0.00 0.00 4.57
1751 3221 4.027572 TGTACTTTCAACTTTGCAGCAC 57.972 40.909 0.00 0.00 0.00 4.40
1752 3222 4.710423 TTGTACTTTCAACTTTGCAGCA 57.290 36.364 0.00 0.00 0.00 4.41
1753 3223 6.695278 TGTATTTGTACTTTCAACTTTGCAGC 59.305 34.615 0.00 0.00 0.00 5.25
1754 3224 8.693504 CATGTATTTGTACTTTCAACTTTGCAG 58.306 33.333 0.00 0.00 0.00 4.41
1755 3225 8.194104 ACATGTATTTGTACTTTCAACTTTGCA 58.806 29.630 0.00 0.00 0.00 4.08
1756 3226 8.574196 ACATGTATTTGTACTTTCAACTTTGC 57.426 30.769 0.00 0.00 0.00 3.68
1800 3270 9.696917 AGATTCGTGCAAATAATTTTCTCTTTT 57.303 25.926 0.00 0.00 0.00 2.27
1801 3271 9.696917 AAGATTCGTGCAAATAATTTTCTCTTT 57.303 25.926 0.00 0.00 0.00 2.52
1802 3272 9.132521 CAAGATTCGTGCAAATAATTTTCTCTT 57.867 29.630 0.00 0.00 0.00 2.85
1803 3273 8.514594 TCAAGATTCGTGCAAATAATTTTCTCT 58.485 29.630 0.00 0.00 0.00 3.10
1804 3274 8.673626 TCAAGATTCGTGCAAATAATTTTCTC 57.326 30.769 0.00 0.00 0.00 2.87
1805 3275 9.079833 CATCAAGATTCGTGCAAATAATTTTCT 57.920 29.630 0.00 0.00 0.00 2.52
1806 3276 7.842721 GCATCAAGATTCGTGCAAATAATTTTC 59.157 33.333 0.00 0.00 37.52 2.29
1807 3277 7.331440 TGCATCAAGATTCGTGCAAATAATTTT 59.669 29.630 0.00 0.00 43.83 1.82
1808 3278 6.812656 TGCATCAAGATTCGTGCAAATAATTT 59.187 30.769 0.00 0.00 43.83 1.82
1809 3279 6.331845 TGCATCAAGATTCGTGCAAATAATT 58.668 32.000 0.00 0.00 43.83 1.40
1810 3280 5.893687 TGCATCAAGATTCGTGCAAATAAT 58.106 33.333 0.00 0.00 43.83 1.28
1811 3281 5.123661 TCTGCATCAAGATTCGTGCAAATAA 59.876 36.000 0.00 0.00 45.77 1.40
1812 3282 4.635324 TCTGCATCAAGATTCGTGCAAATA 59.365 37.500 0.00 0.00 45.77 1.40
1813 3283 3.441222 TCTGCATCAAGATTCGTGCAAAT 59.559 39.130 0.00 0.00 45.77 2.32
1814 3284 2.813172 TCTGCATCAAGATTCGTGCAAA 59.187 40.909 0.00 0.00 45.77 3.68
1815 3285 2.425539 TCTGCATCAAGATTCGTGCAA 58.574 42.857 0.00 0.00 45.77 4.08
1816 3286 2.097680 TCTGCATCAAGATTCGTGCA 57.902 45.000 0.00 0.00 44.50 4.57
1817 3287 3.476295 TTTCTGCATCAAGATTCGTGC 57.524 42.857 0.00 0.00 38.05 5.34
1818 3288 5.163784 ACTCATTTCTGCATCAAGATTCGTG 60.164 40.000 0.00 0.00 0.00 4.35
1819 3289 4.940046 ACTCATTTCTGCATCAAGATTCGT 59.060 37.500 0.00 0.00 0.00 3.85
1820 3290 5.263948 CACTCATTTCTGCATCAAGATTCG 58.736 41.667 0.00 0.00 0.00 3.34
1821 3291 5.125097 ACCACTCATTTCTGCATCAAGATTC 59.875 40.000 0.00 0.00 0.00 2.52
1822 3292 5.014858 ACCACTCATTTCTGCATCAAGATT 58.985 37.500 0.00 0.00 0.00 2.40
1823 3293 4.597004 ACCACTCATTTCTGCATCAAGAT 58.403 39.130 0.00 0.00 0.00 2.40
1824 3294 4.025040 ACCACTCATTTCTGCATCAAGA 57.975 40.909 0.00 0.00 0.00 3.02
1825 3295 4.482386 CAACCACTCATTTCTGCATCAAG 58.518 43.478 0.00 0.00 0.00 3.02
1826 3296 3.256383 CCAACCACTCATTTCTGCATCAA 59.744 43.478 0.00 0.00 0.00 2.57
1827 3297 2.821378 CCAACCACTCATTTCTGCATCA 59.179 45.455 0.00 0.00 0.00 3.07
1828 3298 3.084039 TCCAACCACTCATTTCTGCATC 58.916 45.455 0.00 0.00 0.00 3.91
1829 3299 3.159213 TCCAACCACTCATTTCTGCAT 57.841 42.857 0.00 0.00 0.00 3.96
1830 3300 2.655090 TCCAACCACTCATTTCTGCA 57.345 45.000 0.00 0.00 0.00 4.41
1831 3301 4.096984 CCTTATCCAACCACTCATTTCTGC 59.903 45.833 0.00 0.00 0.00 4.26
1832 3302 5.500234 TCCTTATCCAACCACTCATTTCTG 58.500 41.667 0.00 0.00 0.00 3.02
1833 3303 5.251700 ACTCCTTATCCAACCACTCATTTCT 59.748 40.000 0.00 0.00 0.00 2.52
1834 3304 5.501156 ACTCCTTATCCAACCACTCATTTC 58.499 41.667 0.00 0.00 0.00 2.17
1835 3305 5.520748 ACTCCTTATCCAACCACTCATTT 57.479 39.130 0.00 0.00 0.00 2.32
1836 3306 5.104485 GGTACTCCTTATCCAACCACTCATT 60.104 44.000 0.00 0.00 0.00 2.57
1837 3307 4.409247 GGTACTCCTTATCCAACCACTCAT 59.591 45.833 0.00 0.00 0.00 2.90
1838 3308 3.773119 GGTACTCCTTATCCAACCACTCA 59.227 47.826 0.00 0.00 0.00 3.41
1839 3309 3.134262 GGGTACTCCTTATCCAACCACTC 59.866 52.174 0.00 0.00 29.98 3.51
1840 3310 3.113043 GGGTACTCCTTATCCAACCACT 58.887 50.000 0.00 0.00 29.98 4.00
1841 3311 2.159000 CGGGTACTCCTTATCCAACCAC 60.159 54.545 0.00 0.00 28.52 4.16
1842 3312 2.112998 CGGGTACTCCTTATCCAACCA 58.887 52.381 0.00 0.00 28.52 3.67
1843 3313 1.415289 CCGGGTACTCCTTATCCAACC 59.585 57.143 0.00 0.00 28.52 3.77
1844 3314 1.415289 CCCGGGTACTCCTTATCCAAC 59.585 57.143 14.18 0.00 28.52 3.77
1845 3315 1.008693 ACCCGGGTACTCCTTATCCAA 59.991 52.381 29.13 0.00 28.52 3.53
1846 3316 0.638292 ACCCGGGTACTCCTTATCCA 59.362 55.000 29.13 0.00 28.52 3.41
1847 3317 1.046204 CACCCGGGTACTCCTTATCC 58.954 60.000 29.72 0.00 0.00 2.59
1848 3318 0.391966 GCACCCGGGTACTCCTTATC 59.608 60.000 29.72 3.11 0.00 1.75
1849 3319 0.325860 TGCACCCGGGTACTCCTTAT 60.326 55.000 29.72 0.00 0.00 1.73
1850 3320 0.325860 ATGCACCCGGGTACTCCTTA 60.326 55.000 29.72 4.16 0.00 2.69
1851 3321 0.325860 TATGCACCCGGGTACTCCTT 60.326 55.000 29.72 14.89 0.00 3.36
1852 3322 0.759436 CTATGCACCCGGGTACTCCT 60.759 60.000 29.72 13.70 0.00 3.69
1853 3323 1.746517 CTATGCACCCGGGTACTCC 59.253 63.158 29.72 15.52 0.00 3.85
1854 3324 1.746517 CCTATGCACCCGGGTACTC 59.253 63.158 29.72 18.85 0.00 2.59
1855 3325 2.440817 GCCTATGCACCCGGGTACT 61.441 63.158 29.72 16.37 37.47 2.73
1856 3326 2.110420 GCCTATGCACCCGGGTAC 59.890 66.667 29.72 23.40 37.47 3.34
1857 3327 2.041301 AGCCTATGCACCCGGGTA 60.041 61.111 29.72 13.39 41.13 3.69
1858 3328 2.599139 TAGAGCCTATGCACCCGGGT 62.599 60.000 24.16 24.16 41.13 5.28
1859 3329 1.407656 TTAGAGCCTATGCACCCGGG 61.408 60.000 22.25 22.25 41.13 5.73
1860 3330 0.468226 TTTAGAGCCTATGCACCCGG 59.532 55.000 0.00 0.00 41.13 5.73
1861 3331 1.940613 GTTTTAGAGCCTATGCACCCG 59.059 52.381 0.00 0.00 41.13 5.28
1862 3332 2.999331 TGTTTTAGAGCCTATGCACCC 58.001 47.619 0.00 0.00 41.13 4.61
1863 3333 3.947834 ACATGTTTTAGAGCCTATGCACC 59.052 43.478 0.00 0.00 41.13 5.01
1864 3334 5.567138 AACATGTTTTAGAGCCTATGCAC 57.433 39.130 4.92 0.00 41.13 4.57
1865 3335 6.588719 AAAACATGTTTTAGAGCCTATGCA 57.411 33.333 30.29 0.00 40.61 3.96
1866 3336 5.739161 CGAAAACATGTTTTAGAGCCTATGC 59.261 40.000 31.09 16.24 42.26 3.14
1867 3337 5.739161 GCGAAAACATGTTTTAGAGCCTATG 59.261 40.000 34.36 18.38 42.26 2.23
1868 3338 5.447279 CGCGAAAACATGTTTTAGAGCCTAT 60.447 40.000 34.36 15.06 42.26 2.57
1869 3339 4.142988 CGCGAAAACATGTTTTAGAGCCTA 60.143 41.667 34.36 0.00 42.26 3.93
1870 3340 3.364964 CGCGAAAACATGTTTTAGAGCCT 60.365 43.478 34.36 16.33 42.26 4.58
1871 3341 2.908626 CGCGAAAACATGTTTTAGAGCC 59.091 45.455 34.36 22.13 42.26 4.70
1872 3342 2.338520 GCGCGAAAACATGTTTTAGAGC 59.661 45.455 36.49 36.49 46.24 4.09
1873 3343 3.810373 AGCGCGAAAACATGTTTTAGAG 58.190 40.909 34.36 31.97 42.26 2.43
1874 3344 3.248841 TGAGCGCGAAAACATGTTTTAGA 59.751 39.130 34.36 18.44 42.26 2.10
1875 3345 3.550561 TGAGCGCGAAAACATGTTTTAG 58.449 40.909 31.09 30.04 42.26 1.85
1876 3346 3.550561 CTGAGCGCGAAAACATGTTTTA 58.449 40.909 31.09 16.02 42.26 1.52
1877 3347 2.384382 CTGAGCGCGAAAACATGTTTT 58.616 42.857 31.40 31.40 44.59 2.43
1878 3348 1.334960 CCTGAGCGCGAAAACATGTTT 60.335 47.619 18.13 18.13 0.00 2.83
1879 3349 0.238289 CCTGAGCGCGAAAACATGTT 59.762 50.000 12.10 4.92 0.00 2.71
1880 3350 1.868997 CCTGAGCGCGAAAACATGT 59.131 52.632 12.10 0.00 0.00 3.21
1881 3351 1.512734 GCCTGAGCGCGAAAACATG 60.513 57.895 12.10 1.81 0.00 3.21
1882 3352 2.690778 GGCCTGAGCGCGAAAACAT 61.691 57.895 12.10 0.00 41.24 2.71
1883 3353 3.353836 GGCCTGAGCGCGAAAACA 61.354 61.111 12.10 2.25 41.24 2.83
1884 3354 4.445545 CGGCCTGAGCGCGAAAAC 62.446 66.667 12.10 0.00 41.24 2.43
2240 3718 1.081242 GTCGCCGTCGTTCCTGTAA 60.081 57.895 0.00 0.00 36.96 2.41
2355 3833 2.347731 CTTCCTTAAGAACTCCGGCAC 58.652 52.381 3.36 0.00 34.37 5.01
2495 3973 1.078918 CATGCCTGAGAAGTCGCCA 60.079 57.895 0.00 0.00 0.00 5.69
2524 4003 2.364560 TGGAGAGCCGTCCATCCT 59.635 61.111 0.31 0.00 41.99 3.24
2555 4034 0.758734 CCTCGATGGTGGCCTTATGA 59.241 55.000 3.32 0.00 0.00 2.15
2659 4138 1.062587 GATCTGCCACAAAATCGACCG 59.937 52.381 0.00 0.00 0.00 4.79
2959 4445 6.576185 ACGAAACCAAGTAGTCTTGTTCTTA 58.424 36.000 7.11 0.00 46.70 2.10
2985 4471 2.624838 CGATCCTTCCCCCAATTTCATG 59.375 50.000 0.00 0.00 0.00 3.07
3024 4510 0.463620 GGAGATCAGCACTCAGTCCC 59.536 60.000 0.00 0.00 36.26 4.46
3134 4800 3.357203 TGGCTACTACCAAGAGACAGAG 58.643 50.000 0.00 0.00 36.55 3.35
3161 4831 7.127686 GGACAAGAAAATTTGCTGTCAATTTG 58.872 34.615 20.86 9.46 31.33 2.32
3274 5095 1.434622 CTCCGCCTAGCTGCATTGTG 61.435 60.000 1.02 0.00 0.00 3.33
3279 5100 1.464376 GGATACTCCGCCTAGCTGCA 61.464 60.000 1.02 0.00 0.00 4.41
3366 5294 1.407258 CTGGGTGAAGATCTCCGAGAC 59.593 57.143 0.00 0.00 37.86 3.36
3371 5306 0.908198 ACTGCTGGGTGAAGATCTCC 59.092 55.000 0.00 0.00 0.00 3.71
3383 5318 7.879677 TCATTGATCTATAATTGGTACTGCTGG 59.120 37.037 0.00 0.00 0.00 4.85
3385 5320 9.445878 CATCATTGATCTATAATTGGTACTGCT 57.554 33.333 0.00 0.00 0.00 4.24
3398 5335 8.982685 GTTCGTGTTGTATCATCATTGATCTAT 58.017 33.333 0.00 0.00 41.73 1.98
3414 5351 1.758319 CTGTTCCGCGTTCGTGTTGT 61.758 55.000 4.92 0.00 0.00 3.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.