Multiple sequence alignment - TraesCS6B01G057300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G057300 chr6B 100.000 2950 0 0 1 2950 37790401 37787452 0.000000e+00 5448.0
1 TraesCS6B01G057300 chr6B 98.645 2436 31 2 517 2950 574505397 574507832 0.000000e+00 4314.0
2 TraesCS6B01G057300 chr6B 96.951 164 5 0 332 495 37645447 37645284 2.900000e-70 276.0
3 TraesCS6B01G057300 chr6B 94.410 161 5 3 371 530 38541819 38541662 8.170000e-61 244.0
4 TraesCS6B01G057300 chr6B 93.333 165 8 2 332 496 46661573 46661734 1.060000e-59 241.0
5 TraesCS6B01G057300 chr3A 98.643 2432 30 3 521 2950 184631413 184628983 0.000000e+00 4305.0
6 TraesCS6B01G057300 chr3A 92.267 2470 148 22 518 2950 143287461 143284998 0.000000e+00 3463.0
7 TraesCS6B01G057300 chr3A 93.982 2210 103 6 767 2950 57254719 57252514 0.000000e+00 3317.0
8 TraesCS6B01G057300 chr3A 89.881 1097 76 11 1598 2667 688453736 688454824 0.000000e+00 1378.0
9 TraesCS6B01G057300 chr3A 91.903 247 18 2 518 764 57258022 57257778 7.830000e-91 344.0
10 TraesCS6B01G057300 chr2B 98.234 2435 39 3 519 2950 197578175 197580608 0.000000e+00 4255.0
11 TraesCS6B01G057300 chr2B 93.452 336 15 6 1 332 790587664 790587332 2.640000e-135 492.0
12 TraesCS6B01G057300 chr2B 92.878 337 16 5 1 332 780152668 780152335 1.590000e-132 483.0
13 TraesCS6B01G057300 chr2B 96.774 31 1 0 368 398 785231578 785231608 5.000000e-03 52.8
14 TraesCS6B01G057300 chr1B 98.110 2434 42 4 519 2950 470450534 470452965 0.000000e+00 4237.0
15 TraesCS6B01G057300 chr1B 93.155 336 17 4 1 332 584797615 584797948 3.420000e-134 488.0
16 TraesCS6B01G057300 chr1D 96.287 1212 45 0 1739 2950 224482759 224481548 0.000000e+00 1989.0
17 TraesCS6B01G057300 chr1D 92.563 1264 63 7 514 1748 224489558 224488297 0.000000e+00 1784.0
18 TraesCS6B01G057300 chr1D 90.045 1105 72 19 1871 2948 338060663 338059570 0.000000e+00 1397.0
19 TraesCS6B01G057300 chr1D 90.426 846 50 9 1035 1880 338067603 338066789 0.000000e+00 1085.0
20 TraesCS6B01G057300 chr1D 91.304 138 12 0 762 899 47848566 47848703 3.880000e-44 189.0
21 TraesCS6B01G057300 chr5A 90.421 1378 92 24 1598 2948 647493101 647491737 0.000000e+00 1777.0
22 TraesCS6B01G057300 chr4A 91.657 827 61 7 1598 2421 733740311 733741132 0.000000e+00 1138.0
23 TraesCS6B01G057300 chr4A 85.643 996 74 26 636 1566 733739315 733740306 0.000000e+00 983.0
24 TraesCS6B01G057300 chr7B 94.030 335 13 5 1 331 150834273 150834604 4.390000e-138 501.0
25 TraesCS6B01G057300 chr7B 93.433 335 18 3 1 332 693399415 693399748 7.350000e-136 494.0
26 TraesCS6B01G057300 chr7B 93.134 335 17 6 1 332 698935886 698936217 1.230000e-133 486.0
27 TraesCS6B01G057300 chr7B 92.899 338 15 7 1 332 481852422 481852088 1.590000e-132 483.0
28 TraesCS6B01G057300 chr7D 93.769 337 14 5 1 333 534654153 534653820 1.580000e-137 499.0
29 TraesCS6B01G057300 chr7D 100.000 29 0 0 373 401 25494893 25494921 1.000000e-03 54.7
30 TraesCS6B01G057300 chr3B 93.393 333 13 6 1 332 13402234 13402558 4.420000e-133 484.0
31 TraesCS6B01G057300 chr3B 77.975 395 67 15 519 899 169343395 169343007 2.290000e-56 230.0
32 TraesCS6B01G057300 chr3B 92.308 39 3 0 418 456 772003092 772003054 4.110000e-04 56.5
33 TraesCS6B01G057300 chr3B 100.000 29 0 0 373 401 224152504 224152476 1.000000e-03 54.7
34 TraesCS6B01G057300 chr3B 100.000 29 0 0 373 401 642461596 642461568 1.000000e-03 54.7
35 TraesCS6B01G057300 chr5B 80.000 395 61 14 518 899 237819583 237819194 2.900000e-70 276.0
36 TraesCS6B01G057300 chr6A 91.327 196 11 4 332 526 22193827 22193637 2.250000e-66 263.0
37 TraesCS6B01G057300 chr6D 88.333 120 6 4 411 525 23632486 23632370 1.430000e-28 137.0
38 TraesCS6B01G057300 chr7A 100.000 29 0 0 373 401 595822813 595822785 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G057300 chr6B 37787452 37790401 2949 True 5448.0 5448 100.0000 1 2950 1 chr6B.!!$R2 2949
1 TraesCS6B01G057300 chr6B 574505397 574507832 2435 False 4314.0 4314 98.6450 517 2950 1 chr6B.!!$F2 2433
2 TraesCS6B01G057300 chr3A 184628983 184631413 2430 True 4305.0 4305 98.6430 521 2950 1 chr3A.!!$R2 2429
3 TraesCS6B01G057300 chr3A 143284998 143287461 2463 True 3463.0 3463 92.2670 518 2950 1 chr3A.!!$R1 2432
4 TraesCS6B01G057300 chr3A 57252514 57258022 5508 True 1830.5 3317 92.9425 518 2950 2 chr3A.!!$R3 2432
5 TraesCS6B01G057300 chr3A 688453736 688454824 1088 False 1378.0 1378 89.8810 1598 2667 1 chr3A.!!$F1 1069
6 TraesCS6B01G057300 chr2B 197578175 197580608 2433 False 4255.0 4255 98.2340 519 2950 1 chr2B.!!$F1 2431
7 TraesCS6B01G057300 chr1B 470450534 470452965 2431 False 4237.0 4237 98.1100 519 2950 1 chr1B.!!$F1 2431
8 TraesCS6B01G057300 chr1D 224481548 224482759 1211 True 1989.0 1989 96.2870 1739 2950 1 chr1D.!!$R1 1211
9 TraesCS6B01G057300 chr1D 224488297 224489558 1261 True 1784.0 1784 92.5630 514 1748 1 chr1D.!!$R2 1234
10 TraesCS6B01G057300 chr1D 338059570 338060663 1093 True 1397.0 1397 90.0450 1871 2948 1 chr1D.!!$R3 1077
11 TraesCS6B01G057300 chr1D 338066789 338067603 814 True 1085.0 1085 90.4260 1035 1880 1 chr1D.!!$R4 845
12 TraesCS6B01G057300 chr5A 647491737 647493101 1364 True 1777.0 1777 90.4210 1598 2948 1 chr5A.!!$R1 1350
13 TraesCS6B01G057300 chr4A 733739315 733741132 1817 False 1060.5 1138 88.6500 636 2421 2 chr4A.!!$F1 1785

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
355 356 1.210478 GCAAGGACCTAGATTGCTCCA 59.79 52.381 8.4 0.0 44.57 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2017 5176 4.284829 TCCATGACAATGAACAGCACTA 57.715 40.909 0.0 0.0 35.67 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 8.928270 ATAAACTTGACCTTCTATTGTACTCG 57.072 34.615 0.00 0.00 0.00 4.18
49 50 5.979288 ACTTGACCTTCTATTGTACTCGT 57.021 39.130 0.00 0.00 0.00 4.18
50 51 5.710984 ACTTGACCTTCTATTGTACTCGTG 58.289 41.667 0.00 0.00 0.00 4.35
51 52 5.475909 ACTTGACCTTCTATTGTACTCGTGA 59.524 40.000 0.00 0.00 0.00 4.35
52 53 5.562506 TGACCTTCTATTGTACTCGTGAG 57.437 43.478 0.00 0.00 0.00 3.51
53 54 5.250982 TGACCTTCTATTGTACTCGTGAGA 58.749 41.667 3.44 0.00 39.12 3.27
54 55 5.708697 TGACCTTCTATTGTACTCGTGAGAA 59.291 40.000 3.44 0.00 41.32 2.87
55 56 6.208007 TGACCTTCTATTGTACTCGTGAGAAA 59.792 38.462 3.44 0.00 41.32 2.52
56 57 6.989659 ACCTTCTATTGTACTCGTGAGAAAA 58.010 36.000 3.44 0.00 41.32 2.29
57 58 7.612677 ACCTTCTATTGTACTCGTGAGAAAAT 58.387 34.615 3.44 3.40 41.32 1.82
58 59 8.746530 ACCTTCTATTGTACTCGTGAGAAAATA 58.253 33.333 3.44 4.28 41.32 1.40
59 60 9.582431 CCTTCTATTGTACTCGTGAGAAAATAA 57.418 33.333 3.44 0.00 41.32 1.40
65 66 8.596271 TTGTACTCGTGAGAAAATAATTCACA 57.404 30.769 3.44 0.00 40.88 3.58
66 67 8.596271 TGTACTCGTGAGAAAATAATTCACAA 57.404 30.769 3.44 0.00 40.88 3.33
67 68 9.047371 TGTACTCGTGAGAAAATAATTCACAAA 57.953 29.630 3.44 0.00 40.88 2.83
68 69 9.872757 GTACTCGTGAGAAAATAATTCACAAAA 57.127 29.630 3.44 0.00 40.88 2.44
93 94 8.940397 AAAAATATCCCTTTGACTTCTTCTCA 57.060 30.769 0.00 0.00 0.00 3.27
94 95 8.940397 AAAATATCCCTTTGACTTCTTCTCAA 57.060 30.769 0.00 0.00 0.00 3.02
95 96 8.940397 AAATATCCCTTTGACTTCTTCTCAAA 57.060 30.769 0.00 0.00 36.44 2.69
96 97 8.940397 AATATCCCTTTGACTTCTTCTCAAAA 57.060 30.769 0.00 0.00 37.22 2.44
97 98 8.940397 ATATCCCTTTGACTTCTTCTCAAAAA 57.060 30.769 0.00 0.00 37.22 1.94
126 127 9.255304 GACAAATTTTTGGCTAAAATAGTGTGA 57.745 29.630 25.81 0.92 43.84 3.58
127 128 9.606631 ACAAATTTTTGGCTAAAATAGTGTGAA 57.393 25.926 22.86 0.00 43.84 3.18
135 136 8.220755 TGGCTAAAATAGTGTGAATAATGACC 57.779 34.615 0.00 0.00 0.00 4.02
136 137 8.052748 TGGCTAAAATAGTGTGAATAATGACCT 58.947 33.333 0.00 0.00 0.00 3.85
137 138 9.555727 GGCTAAAATAGTGTGAATAATGACCTA 57.444 33.333 0.00 0.00 0.00 3.08
181 182 4.799564 TTTTTGCTGTGAGGTCAACTTT 57.200 36.364 0.00 0.00 0.00 2.66
182 183 4.799564 TTTTGCTGTGAGGTCAACTTTT 57.200 36.364 0.00 0.00 0.00 2.27
183 184 3.781079 TTGCTGTGAGGTCAACTTTTG 57.219 42.857 0.00 0.00 0.00 2.44
184 185 2.722094 TGCTGTGAGGTCAACTTTTGT 58.278 42.857 0.00 0.00 0.00 2.83
185 186 3.088532 TGCTGTGAGGTCAACTTTTGTT 58.911 40.909 0.00 0.00 44.66 2.83
186 187 3.509575 TGCTGTGAGGTCAACTTTTGTTT 59.490 39.130 0.00 0.00 41.35 2.83
187 188 4.021544 TGCTGTGAGGTCAACTTTTGTTTT 60.022 37.500 0.00 0.00 41.35 2.43
188 189 4.929211 GCTGTGAGGTCAACTTTTGTTTTT 59.071 37.500 0.00 0.00 41.35 1.94
212 213 7.675270 TTCGTCGAGATTTATTTACTAGTGC 57.325 36.000 5.39 0.00 0.00 4.40
213 214 6.788243 TCGTCGAGATTTATTTACTAGTGCA 58.212 36.000 5.39 0.00 0.00 4.57
214 215 7.252708 TCGTCGAGATTTATTTACTAGTGCAA 58.747 34.615 5.39 0.00 0.00 4.08
215 216 7.756272 TCGTCGAGATTTATTTACTAGTGCAAA 59.244 33.333 5.39 0.00 0.00 3.68
216 217 8.377681 CGTCGAGATTTATTTACTAGTGCAAAA 58.622 33.333 5.39 0.00 0.00 2.44
217 218 9.690434 GTCGAGATTTATTTACTAGTGCAAAAG 57.310 33.333 5.39 0.00 0.00 2.27
218 219 9.431887 TCGAGATTTATTTACTAGTGCAAAAGT 57.568 29.630 5.39 7.32 0.00 2.66
227 228 8.726870 TTTACTAGTGCAAAAGTAAGTCAAGT 57.273 30.769 17.10 0.00 38.89 3.16
228 229 6.604735 ACTAGTGCAAAAGTAAGTCAAGTG 57.395 37.500 0.00 0.00 0.00 3.16
229 230 6.113411 ACTAGTGCAAAAGTAAGTCAAGTGT 58.887 36.000 0.00 0.00 0.00 3.55
230 231 5.897377 AGTGCAAAAGTAAGTCAAGTGTT 57.103 34.783 0.00 0.00 0.00 3.32
231 232 6.267496 AGTGCAAAAGTAAGTCAAGTGTTT 57.733 33.333 0.00 0.00 0.00 2.83
232 233 6.687604 AGTGCAAAAGTAAGTCAAGTGTTTT 58.312 32.000 0.00 0.00 0.00 2.43
233 234 6.586082 AGTGCAAAAGTAAGTCAAGTGTTTTG 59.414 34.615 0.00 0.00 37.74 2.44
234 235 6.364976 GTGCAAAAGTAAGTCAAGTGTTTTGT 59.635 34.615 0.00 0.00 37.26 2.83
235 236 6.584563 TGCAAAAGTAAGTCAAGTGTTTTGTC 59.415 34.615 0.00 0.00 37.26 3.18
236 237 6.034577 GCAAAAGTAAGTCAAGTGTTTTGTCC 59.965 38.462 0.00 0.00 37.26 4.02
237 238 6.827586 AAAGTAAGTCAAGTGTTTTGTCCA 57.172 33.333 0.00 0.00 0.00 4.02
238 239 6.827586 AAGTAAGTCAAGTGTTTTGTCCAA 57.172 33.333 0.00 0.00 0.00 3.53
239 240 6.827586 AGTAAGTCAAGTGTTTTGTCCAAA 57.172 33.333 0.00 0.00 0.00 3.28
240 241 7.404671 AGTAAGTCAAGTGTTTTGTCCAAAT 57.595 32.000 0.00 0.00 0.00 2.32
241 242 8.514330 AGTAAGTCAAGTGTTTTGTCCAAATA 57.486 30.769 0.00 0.00 0.00 1.40
242 243 8.621286 AGTAAGTCAAGTGTTTTGTCCAAATAG 58.379 33.333 0.00 0.00 0.00 1.73
243 244 7.404671 AAGTCAAGTGTTTTGTCCAAATAGT 57.595 32.000 0.00 0.00 0.00 2.12
244 245 7.404671 AGTCAAGTGTTTTGTCCAAATAGTT 57.595 32.000 0.00 0.00 31.15 2.24
245 246 7.480810 AGTCAAGTGTTTTGTCCAAATAGTTC 58.519 34.615 0.00 0.00 29.13 3.01
246 247 7.339466 AGTCAAGTGTTTTGTCCAAATAGTTCT 59.661 33.333 0.00 0.00 29.13 3.01
247 248 7.973944 GTCAAGTGTTTTGTCCAAATAGTTCTT 59.026 33.333 0.00 0.00 29.13 2.52
248 249 9.179909 TCAAGTGTTTTGTCCAAATAGTTCTTA 57.820 29.630 0.00 0.00 29.13 2.10
249 250 9.233232 CAAGTGTTTTGTCCAAATAGTTCTTAC 57.767 33.333 0.00 0.00 29.13 2.34
250 251 7.937649 AGTGTTTTGTCCAAATAGTTCTTACC 58.062 34.615 0.00 0.00 0.00 2.85
251 252 7.778382 AGTGTTTTGTCCAAATAGTTCTTACCT 59.222 33.333 0.00 0.00 0.00 3.08
252 253 9.059260 GTGTTTTGTCCAAATAGTTCTTACCTA 57.941 33.333 0.00 0.00 0.00 3.08
253 254 9.802039 TGTTTTGTCCAAATAGTTCTTACCTAT 57.198 29.630 0.00 0.00 0.00 2.57
310 311 8.974292 ATCCCATATAGGATGTATATACACCC 57.026 38.462 17.62 17.62 45.25 4.61
311 312 7.899972 TCCCATATAGGATGTATATACACCCA 58.100 38.462 25.48 13.38 42.67 4.51
312 313 8.010697 TCCCATATAGGATGTATATACACCCAG 58.989 40.741 25.48 11.05 42.67 4.45
313 314 8.010697 CCCATATAGGATGTATATACACCCAGA 58.989 40.741 25.48 14.63 42.67 3.86
314 315 9.434275 CCATATAGGATGTATATACACCCAGAA 57.566 37.037 25.48 12.50 42.67 3.02
317 318 6.435292 AGGATGTATATACACCCAGAAACC 57.565 41.667 25.48 14.17 42.67 3.27
318 319 5.908831 AGGATGTATATACACCCAGAAACCA 59.091 40.000 25.48 0.00 42.67 3.67
319 320 6.388689 AGGATGTATATACACCCAGAAACCAA 59.611 38.462 25.48 0.00 42.67 3.67
320 321 7.057894 GGATGTATATACACCCAGAAACCAAA 58.942 38.462 20.00 0.00 39.80 3.28
321 322 7.228706 GGATGTATATACACCCAGAAACCAAAG 59.771 40.741 20.00 0.00 39.80 2.77
322 323 7.023171 TGTATATACACCCAGAAACCAAAGT 57.977 36.000 11.62 0.00 0.00 2.66
323 324 6.882140 TGTATATACACCCAGAAACCAAAGTG 59.118 38.462 11.62 0.00 0.00 3.16
324 325 2.525105 ACACCCAGAAACCAAAGTGT 57.475 45.000 0.00 0.00 33.81 3.55
325 326 3.655615 ACACCCAGAAACCAAAGTGTA 57.344 42.857 0.00 0.00 36.73 2.90
326 327 4.178956 ACACCCAGAAACCAAAGTGTAT 57.821 40.909 0.00 0.00 36.73 2.29
327 328 4.542697 ACACCCAGAAACCAAAGTGTATT 58.457 39.130 0.00 0.00 36.73 1.89
328 329 4.959839 ACACCCAGAAACCAAAGTGTATTT 59.040 37.500 0.00 0.00 36.73 1.40
329 330 5.068591 ACACCCAGAAACCAAAGTGTATTTC 59.931 40.000 0.00 0.00 36.73 2.17
330 331 4.587262 ACCCAGAAACCAAAGTGTATTTCC 59.413 41.667 0.00 0.00 32.56 3.13
331 332 4.021456 CCCAGAAACCAAAGTGTATTTCCC 60.021 45.833 0.00 0.00 32.56 3.97
332 333 4.586841 CCAGAAACCAAAGTGTATTTCCCA 59.413 41.667 0.00 0.00 32.56 4.37
333 334 5.069781 CCAGAAACCAAAGTGTATTTCCCAA 59.930 40.000 0.00 0.00 32.56 4.12
334 335 6.239572 CCAGAAACCAAAGTGTATTTCCCAAT 60.240 38.462 0.00 0.00 32.56 3.16
335 336 6.646240 CAGAAACCAAAGTGTATTTCCCAATG 59.354 38.462 0.00 0.00 32.56 2.82
336 337 4.535526 ACCAAAGTGTATTTCCCAATGC 57.464 40.909 0.00 0.00 0.00 3.56
337 338 3.900601 ACCAAAGTGTATTTCCCAATGCA 59.099 39.130 0.00 0.00 33.03 3.96
338 339 4.346418 ACCAAAGTGTATTTCCCAATGCAA 59.654 37.500 0.00 0.00 36.83 4.08
339 340 4.931002 CCAAAGTGTATTTCCCAATGCAAG 59.069 41.667 0.00 0.00 36.83 4.01
340 341 4.806640 AAGTGTATTTCCCAATGCAAGG 57.193 40.909 0.00 0.00 36.83 3.61
341 342 4.046286 AGTGTATTTCCCAATGCAAGGA 57.954 40.909 9.95 4.83 36.83 3.36
342 343 3.763897 AGTGTATTTCCCAATGCAAGGAC 59.236 43.478 9.95 1.13 36.83 3.85
343 344 3.096092 TGTATTTCCCAATGCAAGGACC 58.904 45.455 9.95 0.00 32.57 4.46
344 345 2.629017 ATTTCCCAATGCAAGGACCT 57.371 45.000 9.95 0.00 0.00 3.85
345 346 3.756082 ATTTCCCAATGCAAGGACCTA 57.244 42.857 9.95 0.00 0.00 3.08
346 347 2.806945 TTCCCAATGCAAGGACCTAG 57.193 50.000 9.95 0.00 0.00 3.02
347 348 1.965414 TCCCAATGCAAGGACCTAGA 58.035 50.000 9.95 0.00 0.00 2.43
348 349 2.492025 TCCCAATGCAAGGACCTAGAT 58.508 47.619 9.95 0.00 0.00 1.98
349 350 2.852449 TCCCAATGCAAGGACCTAGATT 59.148 45.455 9.95 0.00 0.00 2.40
350 351 2.954318 CCCAATGCAAGGACCTAGATTG 59.046 50.000 9.95 3.90 0.00 2.67
354 355 1.960417 GCAAGGACCTAGATTGCTCC 58.040 55.000 8.40 0.53 44.57 4.70
355 356 1.210478 GCAAGGACCTAGATTGCTCCA 59.790 52.381 8.40 0.00 44.57 3.86
356 357 2.356125 GCAAGGACCTAGATTGCTCCAA 60.356 50.000 8.40 0.00 44.57 3.53
357 358 3.873801 GCAAGGACCTAGATTGCTCCAAA 60.874 47.826 8.40 0.00 44.57 3.28
358 359 4.530875 CAAGGACCTAGATTGCTCCAAAT 58.469 43.478 0.00 0.00 0.00 2.32
359 360 5.684704 CAAGGACCTAGATTGCTCCAAATA 58.315 41.667 0.00 0.00 0.00 1.40
360 361 6.302269 CAAGGACCTAGATTGCTCCAAATAT 58.698 40.000 0.00 0.00 0.00 1.28
361 362 6.120507 AGGACCTAGATTGCTCCAAATATC 57.879 41.667 0.00 0.00 0.00 1.63
362 363 5.608437 AGGACCTAGATTGCTCCAAATATCA 59.392 40.000 0.00 0.00 0.00 2.15
363 364 5.936956 GGACCTAGATTGCTCCAAATATCAG 59.063 44.000 0.00 0.00 0.00 2.90
364 365 6.465035 GGACCTAGATTGCTCCAAATATCAGT 60.465 42.308 0.00 0.00 0.00 3.41
365 366 7.256332 GGACCTAGATTGCTCCAAATATCAGTA 60.256 40.741 0.00 0.00 0.00 2.74
366 367 7.445945 ACCTAGATTGCTCCAAATATCAGTAC 58.554 38.462 0.00 0.00 0.00 2.73
367 368 7.291182 ACCTAGATTGCTCCAAATATCAGTACT 59.709 37.037 0.00 0.00 0.00 2.73
368 369 8.807118 CCTAGATTGCTCCAAATATCAGTACTA 58.193 37.037 0.00 0.00 0.00 1.82
371 372 9.499479 AGATTGCTCCAAATATCAGTACTATTG 57.501 33.333 0.00 0.00 0.00 1.90
372 373 9.494271 GATTGCTCCAAATATCAGTACTATTGA 57.506 33.333 0.00 0.00 0.00 2.57
374 375 9.494271 TTGCTCCAAATATCAGTACTATTGATC 57.506 33.333 0.00 0.00 36.68 2.92
375 376 8.650490 TGCTCCAAATATCAGTACTATTGATCA 58.350 33.333 0.00 0.00 36.68 2.92
376 377 8.930760 GCTCCAAATATCAGTACTATTGATCAC 58.069 37.037 0.00 0.00 36.68 3.06
377 378 9.987272 CTCCAAATATCAGTACTATTGATCACA 57.013 33.333 0.00 0.00 36.68 3.58
446 447 7.949690 ATATCCTACCTAATATACGTGTGCA 57.050 36.000 0.00 0.00 0.00 4.57
447 448 6.659745 ATCCTACCTAATATACGTGTGCAA 57.340 37.500 0.00 0.00 0.00 4.08
448 449 6.659745 TCCTACCTAATATACGTGTGCAAT 57.340 37.500 0.00 0.00 0.00 3.56
449 450 7.058023 TCCTACCTAATATACGTGTGCAATT 57.942 36.000 0.00 0.00 0.00 2.32
450 451 8.180706 TCCTACCTAATATACGTGTGCAATTA 57.819 34.615 0.00 0.00 0.00 1.40
451 452 8.640651 TCCTACCTAATATACGTGTGCAATTAA 58.359 33.333 0.00 0.00 0.00 1.40
452 453 9.431887 CCTACCTAATATACGTGTGCAATTAAT 57.568 33.333 0.00 0.00 0.00 1.40
461 462 6.844696 ACGTGTGCAATTAATATACTCCTG 57.155 37.500 0.00 0.00 0.00 3.86
462 463 5.236478 ACGTGTGCAATTAATATACTCCTGC 59.764 40.000 0.00 0.12 0.00 4.85
463 464 5.334105 CGTGTGCAATTAATATACTCCTGCC 60.334 44.000 0.00 0.00 0.00 4.85
464 465 5.530915 GTGTGCAATTAATATACTCCTGCCA 59.469 40.000 0.00 0.45 0.00 4.92
465 466 6.207417 GTGTGCAATTAATATACTCCTGCCAT 59.793 38.462 0.00 0.00 0.00 4.40
466 467 6.777091 TGTGCAATTAATATACTCCTGCCATT 59.223 34.615 0.00 0.00 0.00 3.16
467 468 7.086376 GTGCAATTAATATACTCCTGCCATTG 58.914 38.462 0.00 0.00 0.00 2.82
468 469 6.777091 TGCAATTAATATACTCCTGCCATTGT 59.223 34.615 4.12 0.00 0.00 2.71
469 470 7.941790 TGCAATTAATATACTCCTGCCATTGTA 59.058 33.333 4.12 0.00 0.00 2.41
470 471 8.454106 GCAATTAATATACTCCTGCCATTGTAG 58.546 37.037 0.00 0.00 0.00 2.74
471 472 9.507329 CAATTAATATACTCCTGCCATTGTAGT 57.493 33.333 0.00 0.00 0.00 2.73
472 473 9.507329 AATTAATATACTCCTGCCATTGTAGTG 57.493 33.333 0.00 0.00 0.00 2.74
473 474 3.845781 ATACTCCTGCCATTGTAGTGG 57.154 47.619 0.00 0.00 42.35 4.00
474 475 1.362224 ACTCCTGCCATTGTAGTGGT 58.638 50.000 0.00 0.00 41.47 4.16
475 476 1.705186 ACTCCTGCCATTGTAGTGGTT 59.295 47.619 0.00 0.00 41.47 3.67
476 477 2.108250 ACTCCTGCCATTGTAGTGGTTT 59.892 45.455 0.00 0.00 41.47 3.27
477 478 2.749621 CTCCTGCCATTGTAGTGGTTTC 59.250 50.000 0.00 0.00 41.47 2.78
478 479 2.375174 TCCTGCCATTGTAGTGGTTTCT 59.625 45.455 0.00 0.00 41.47 2.52
479 480 3.157087 CCTGCCATTGTAGTGGTTTCTT 58.843 45.455 0.00 0.00 41.47 2.52
480 481 4.042311 TCCTGCCATTGTAGTGGTTTCTTA 59.958 41.667 0.00 0.00 41.47 2.10
481 482 4.949856 CCTGCCATTGTAGTGGTTTCTTAT 59.050 41.667 0.00 0.00 41.47 1.73
482 483 5.418840 CCTGCCATTGTAGTGGTTTCTTATT 59.581 40.000 0.00 0.00 41.47 1.40
483 484 6.071391 CCTGCCATTGTAGTGGTTTCTTATTT 60.071 38.462 0.00 0.00 41.47 1.40
484 485 6.686630 TGCCATTGTAGTGGTTTCTTATTTG 58.313 36.000 0.00 0.00 41.47 2.32
485 486 6.491745 TGCCATTGTAGTGGTTTCTTATTTGA 59.508 34.615 0.00 0.00 41.47 2.69
486 487 7.014711 TGCCATTGTAGTGGTTTCTTATTTGAA 59.985 33.333 0.00 0.00 41.47 2.69
487 488 7.870445 GCCATTGTAGTGGTTTCTTATTTGAAA 59.130 33.333 0.00 0.00 41.47 2.69
488 489 9.757227 CCATTGTAGTGGTTTCTTATTTGAAAA 57.243 29.630 0.00 0.00 37.63 2.29
547 548 6.895782 ACCTACTAATAAACCAGCTATTGCA 58.104 36.000 1.12 0.00 42.74 4.08
629 630 3.305813 CGCGCTCCCTATTTAAGTGGATA 60.306 47.826 5.56 0.00 0.00 2.59
1152 4308 3.438216 TCCTTGATCAAACCATGCTCA 57.562 42.857 9.88 0.00 32.54 4.26
2017 5176 6.552445 AGAGCAGATACAAAGAAGGTACAT 57.448 37.500 0.00 0.00 0.00 2.29
2454 5640 5.524971 ACATGACATTGGCAGGAATTATG 57.475 39.130 11.80 0.00 0.00 1.90
2506 5692 6.214615 TGAAGAAATGATTGTCCCAGGTACTA 59.785 38.462 0.00 0.00 36.02 1.82
2613 5801 6.484364 TCAGATTGACCATGATTGCTACTA 57.516 37.500 0.00 0.00 0.00 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 9.367444 CGAGTACAATAGAAGGTCAAGTTTATT 57.633 33.333 0.00 0.00 0.00 1.40
23 24 8.529476 ACGAGTACAATAGAAGGTCAAGTTTAT 58.471 33.333 0.00 0.00 0.00 1.40
24 25 7.811236 CACGAGTACAATAGAAGGTCAAGTTTA 59.189 37.037 0.00 0.00 0.00 2.01
25 26 6.645415 CACGAGTACAATAGAAGGTCAAGTTT 59.355 38.462 0.00 0.00 0.00 2.66
26 27 6.015688 TCACGAGTACAATAGAAGGTCAAGTT 60.016 38.462 0.00 0.00 0.00 2.66
27 28 5.475909 TCACGAGTACAATAGAAGGTCAAGT 59.524 40.000 0.00 0.00 0.00 3.16
28 29 5.950883 TCACGAGTACAATAGAAGGTCAAG 58.049 41.667 0.00 0.00 0.00 3.02
29 30 5.708697 TCTCACGAGTACAATAGAAGGTCAA 59.291 40.000 0.00 0.00 0.00 3.18
30 31 5.250982 TCTCACGAGTACAATAGAAGGTCA 58.749 41.667 0.00 0.00 0.00 4.02
31 32 5.814764 TCTCACGAGTACAATAGAAGGTC 57.185 43.478 0.00 0.00 0.00 3.85
32 33 6.585695 TTTCTCACGAGTACAATAGAAGGT 57.414 37.500 0.00 0.00 0.00 3.50
33 34 9.582431 TTATTTTCTCACGAGTACAATAGAAGG 57.418 33.333 0.00 0.00 0.00 3.46
39 40 9.214957 TGTGAATTATTTTCTCACGAGTACAAT 57.785 29.630 0.00 0.00 41.94 2.71
40 41 8.596271 TGTGAATTATTTTCTCACGAGTACAA 57.404 30.769 0.00 0.00 41.94 2.41
41 42 8.596271 TTGTGAATTATTTTCTCACGAGTACA 57.404 30.769 0.00 0.00 41.94 2.90
42 43 9.872757 TTTTGTGAATTATTTTCTCACGAGTAC 57.127 29.630 0.00 0.00 41.94 2.73
68 69 8.940397 TGAGAAGAAGTCAAAGGGATATTTTT 57.060 30.769 0.00 0.00 0.00 1.94
69 70 8.940397 TTGAGAAGAAGTCAAAGGGATATTTT 57.060 30.769 0.00 0.00 30.89 1.82
70 71 8.940397 TTTGAGAAGAAGTCAAAGGGATATTT 57.060 30.769 0.00 0.00 38.66 1.40
71 72 8.940397 TTTTGAGAAGAAGTCAAAGGGATATT 57.060 30.769 0.00 0.00 43.11 1.28
72 73 8.940397 TTTTTGAGAAGAAGTCAAAGGGATAT 57.060 30.769 0.00 0.00 43.11 1.63
98 99 9.830975 ACACTATTTTAGCCAAAAATTTGTCTT 57.169 25.926 11.38 0.00 43.75 3.01
99 100 9.260002 CACACTATTTTAGCCAAAAATTTGTCT 57.740 29.630 11.38 0.28 43.75 3.41
100 101 9.255304 TCACACTATTTTAGCCAAAAATTTGTC 57.745 29.630 11.38 0.00 43.75 3.18
101 102 9.606631 TTCACACTATTTTAGCCAAAAATTTGT 57.393 25.926 11.38 11.68 43.75 2.83
109 110 8.682710 GGTCATTATTCACACTATTTTAGCCAA 58.317 33.333 0.00 0.00 0.00 4.52
110 111 8.052748 AGGTCATTATTCACACTATTTTAGCCA 58.947 33.333 0.00 0.00 0.00 4.75
111 112 8.451908 AGGTCATTATTCACACTATTTTAGCC 57.548 34.615 0.00 0.00 0.00 3.93
160 161 4.799564 AAAGTTGACCTCACAGCAAAAA 57.200 36.364 0.00 0.00 0.00 1.94
161 162 4.021544 ACAAAAGTTGACCTCACAGCAAAA 60.022 37.500 0.00 0.00 0.00 2.44
162 163 3.509575 ACAAAAGTTGACCTCACAGCAAA 59.490 39.130 0.00 0.00 0.00 3.68
163 164 3.088532 ACAAAAGTTGACCTCACAGCAA 58.911 40.909 0.00 0.00 0.00 3.91
164 165 2.722094 ACAAAAGTTGACCTCACAGCA 58.278 42.857 0.00 0.00 0.00 4.41
165 166 3.782889 AACAAAAGTTGACCTCACAGC 57.217 42.857 0.00 0.00 0.00 4.40
186 187 8.589629 GCACTAGTAAATAAATCTCGACGAAAA 58.410 33.333 0.00 0.00 0.00 2.29
187 188 7.756272 TGCACTAGTAAATAAATCTCGACGAAA 59.244 33.333 0.00 0.00 0.00 3.46
188 189 7.252708 TGCACTAGTAAATAAATCTCGACGAA 58.747 34.615 0.00 0.00 0.00 3.85
189 190 6.788243 TGCACTAGTAAATAAATCTCGACGA 58.212 36.000 0.00 0.00 0.00 4.20
190 191 7.445900 TTGCACTAGTAAATAAATCTCGACG 57.554 36.000 0.00 0.00 0.00 5.12
191 192 9.690434 CTTTTGCACTAGTAAATAAATCTCGAC 57.310 33.333 0.00 0.00 0.00 4.20
192 193 9.431887 ACTTTTGCACTAGTAAATAAATCTCGA 57.568 29.630 0.00 0.00 0.00 4.04
201 202 9.338622 ACTTGACTTACTTTTGCACTAGTAAAT 57.661 29.630 16.44 9.87 36.66 1.40
202 203 8.609176 CACTTGACTTACTTTTGCACTAGTAAA 58.391 33.333 16.44 1.77 36.66 2.01
203 204 7.767198 ACACTTGACTTACTTTTGCACTAGTAA 59.233 33.333 15.40 15.40 35.96 2.24
204 205 7.270047 ACACTTGACTTACTTTTGCACTAGTA 58.730 34.615 0.00 3.57 0.00 1.82
205 206 6.113411 ACACTTGACTTACTTTTGCACTAGT 58.887 36.000 5.34 5.34 0.00 2.57
206 207 6.604735 ACACTTGACTTACTTTTGCACTAG 57.395 37.500 0.00 0.00 0.00 2.57
207 208 6.995511 AACACTTGACTTACTTTTGCACTA 57.004 33.333 0.00 0.00 0.00 2.74
208 209 5.897377 AACACTTGACTTACTTTTGCACT 57.103 34.783 0.00 0.00 0.00 4.40
209 210 6.364976 ACAAAACACTTGACTTACTTTTGCAC 59.635 34.615 0.00 0.00 33.72 4.57
210 211 6.451393 ACAAAACACTTGACTTACTTTTGCA 58.549 32.000 0.00 0.00 33.72 4.08
211 212 6.034577 GGACAAAACACTTGACTTACTTTTGC 59.965 38.462 0.00 0.00 33.72 3.68
212 213 7.087639 TGGACAAAACACTTGACTTACTTTTG 58.912 34.615 0.00 0.00 35.61 2.44
213 214 7.222000 TGGACAAAACACTTGACTTACTTTT 57.778 32.000 0.00 0.00 0.00 2.27
214 215 6.827586 TGGACAAAACACTTGACTTACTTT 57.172 33.333 0.00 0.00 0.00 2.66
215 216 6.827586 TTGGACAAAACACTTGACTTACTT 57.172 33.333 0.00 0.00 0.00 2.24
216 217 6.827586 TTTGGACAAAACACTTGACTTACT 57.172 33.333 0.00 0.00 0.00 2.24
217 218 8.403236 ACTATTTGGACAAAACACTTGACTTAC 58.597 33.333 1.17 0.00 33.56 2.34
218 219 8.514330 ACTATTTGGACAAAACACTTGACTTA 57.486 30.769 1.17 0.00 33.56 2.24
219 220 7.404671 ACTATTTGGACAAAACACTTGACTT 57.595 32.000 1.17 0.00 33.56 3.01
220 221 7.339466 AGAACTATTTGGACAAAACACTTGACT 59.661 33.333 1.17 0.00 33.56 3.41
221 222 7.480810 AGAACTATTTGGACAAAACACTTGAC 58.519 34.615 1.17 0.00 33.56 3.18
222 223 7.639113 AGAACTATTTGGACAAAACACTTGA 57.361 32.000 1.17 0.00 33.56 3.02
223 224 9.233232 GTAAGAACTATTTGGACAAAACACTTG 57.767 33.333 1.17 0.00 33.56 3.16
224 225 8.410912 GGTAAGAACTATTTGGACAAAACACTT 58.589 33.333 1.17 6.48 33.56 3.16
225 226 7.778382 AGGTAAGAACTATTTGGACAAAACACT 59.222 33.333 1.17 0.00 33.56 3.55
226 227 7.937649 AGGTAAGAACTATTTGGACAAAACAC 58.062 34.615 1.17 0.00 33.56 3.32
227 228 9.802039 ATAGGTAAGAACTATTTGGACAAAACA 57.198 29.630 1.17 0.00 33.56 2.83
296 297 7.773690 ACTTTGGTTTCTGGGTGTATATACATC 59.226 37.037 18.27 17.37 38.63 3.06
297 298 7.556275 CACTTTGGTTTCTGGGTGTATATACAT 59.444 37.037 18.27 0.00 38.63 2.29
298 299 6.882140 CACTTTGGTTTCTGGGTGTATATACA 59.118 38.462 11.62 11.62 0.00 2.29
299 300 6.882678 ACACTTTGGTTTCTGGGTGTATATAC 59.117 38.462 5.89 5.89 36.37 1.47
300 301 7.023171 ACACTTTGGTTTCTGGGTGTATATA 57.977 36.000 0.00 0.00 36.37 0.86
301 302 5.887754 ACACTTTGGTTTCTGGGTGTATAT 58.112 37.500 0.00 0.00 36.37 0.86
302 303 5.313280 ACACTTTGGTTTCTGGGTGTATA 57.687 39.130 0.00 0.00 36.37 1.47
303 304 4.178956 ACACTTTGGTTTCTGGGTGTAT 57.821 40.909 0.00 0.00 36.37 2.29
304 305 3.655615 ACACTTTGGTTTCTGGGTGTA 57.344 42.857 0.00 0.00 36.37 2.90
305 306 2.525105 ACACTTTGGTTTCTGGGTGT 57.475 45.000 0.00 0.00 33.82 4.16
306 307 5.508994 GGAAATACACTTTGGTTTCTGGGTG 60.509 44.000 0.00 0.00 31.35 4.61
307 308 4.587262 GGAAATACACTTTGGTTTCTGGGT 59.413 41.667 0.00 0.00 31.35 4.51
308 309 4.021456 GGGAAATACACTTTGGTTTCTGGG 60.021 45.833 0.00 0.00 31.35 4.45
309 310 4.586841 TGGGAAATACACTTTGGTTTCTGG 59.413 41.667 0.00 0.00 31.35 3.86
310 311 5.782893 TGGGAAATACACTTTGGTTTCTG 57.217 39.130 0.00 0.00 31.35 3.02
311 312 6.741240 GCATTGGGAAATACACTTTGGTTTCT 60.741 38.462 0.00 0.00 31.35 2.52
312 313 5.408299 GCATTGGGAAATACACTTTGGTTTC 59.592 40.000 0.00 0.00 0.00 2.78
313 314 5.163258 TGCATTGGGAAATACACTTTGGTTT 60.163 36.000 0.00 0.00 0.00 3.27
314 315 4.346418 TGCATTGGGAAATACACTTTGGTT 59.654 37.500 0.00 0.00 0.00 3.67
315 316 3.900601 TGCATTGGGAAATACACTTTGGT 59.099 39.130 0.00 0.00 0.00 3.67
316 317 4.533919 TGCATTGGGAAATACACTTTGG 57.466 40.909 0.00 0.00 0.00 3.28
317 318 4.931002 CCTTGCATTGGGAAATACACTTTG 59.069 41.667 0.00 0.00 0.00 2.77
318 319 4.837860 TCCTTGCATTGGGAAATACACTTT 59.162 37.500 6.44 0.00 0.00 2.66
319 320 4.220602 GTCCTTGCATTGGGAAATACACTT 59.779 41.667 6.44 0.00 33.01 3.16
320 321 3.763897 GTCCTTGCATTGGGAAATACACT 59.236 43.478 6.44 0.00 33.01 3.55
321 322 3.119137 GGTCCTTGCATTGGGAAATACAC 60.119 47.826 6.44 0.00 33.01 2.90
322 323 3.096092 GGTCCTTGCATTGGGAAATACA 58.904 45.455 6.44 0.00 33.01 2.29
323 324 3.365472 AGGTCCTTGCATTGGGAAATAC 58.635 45.455 6.44 0.00 33.01 1.89
324 325 3.756082 AGGTCCTTGCATTGGGAAATA 57.244 42.857 6.44 0.00 33.01 1.40
325 326 2.629017 AGGTCCTTGCATTGGGAAAT 57.371 45.000 6.44 0.00 33.01 2.17
326 327 2.647299 TCTAGGTCCTTGCATTGGGAAA 59.353 45.455 0.00 0.00 33.01 3.13
327 328 2.274542 TCTAGGTCCTTGCATTGGGAA 58.725 47.619 0.00 0.00 33.01 3.97
328 329 1.965414 TCTAGGTCCTTGCATTGGGA 58.035 50.000 0.00 3.38 0.00 4.37
329 330 2.954318 CAATCTAGGTCCTTGCATTGGG 59.046 50.000 0.00 1.10 0.00 4.12
330 331 2.360165 GCAATCTAGGTCCTTGCATTGG 59.640 50.000 17.98 0.00 43.62 3.16
331 332 3.285484 AGCAATCTAGGTCCTTGCATTG 58.715 45.455 14.35 14.67 45.93 2.82
332 333 3.549794 GAGCAATCTAGGTCCTTGCATT 58.450 45.455 14.35 4.69 45.93 3.56
333 334 3.205784 GAGCAATCTAGGTCCTTGCAT 57.794 47.619 14.35 1.65 45.93 3.96
334 335 2.698855 GAGCAATCTAGGTCCTTGCA 57.301 50.000 14.35 0.00 45.93 4.08
340 341 6.529220 ACTGATATTTGGAGCAATCTAGGTC 58.471 40.000 0.00 0.00 35.36 3.85
341 342 6.506538 ACTGATATTTGGAGCAATCTAGGT 57.493 37.500 0.00 0.00 0.00 3.08
342 343 7.675062 AGTACTGATATTTGGAGCAATCTAGG 58.325 38.462 0.00 0.00 0.00 3.02
345 346 9.499479 CAATAGTACTGATATTTGGAGCAATCT 57.501 33.333 5.39 0.00 0.00 2.40
346 347 9.494271 TCAATAGTACTGATATTTGGAGCAATC 57.506 33.333 5.39 0.00 0.00 2.67
348 349 9.494271 GATCAATAGTACTGATATTTGGAGCAA 57.506 33.333 5.39 0.00 33.63 3.91
349 350 8.650490 TGATCAATAGTACTGATATTTGGAGCA 58.350 33.333 5.39 0.00 33.63 4.26
350 351 8.930760 GTGATCAATAGTACTGATATTTGGAGC 58.069 37.037 5.39 0.00 33.63 4.70
351 352 9.987272 TGTGATCAATAGTACTGATATTTGGAG 57.013 33.333 5.39 0.00 33.63 3.86
420 421 9.465199 TGCACACGTATATTAGGTAGGATATAA 57.535 33.333 0.00 0.00 0.00 0.98
421 422 9.465199 TTGCACACGTATATTAGGTAGGATATA 57.535 33.333 0.00 0.00 0.00 0.86
422 423 7.949690 TGCACACGTATATTAGGTAGGATAT 57.050 36.000 0.00 0.00 0.00 1.63
423 424 7.764141 TTGCACACGTATATTAGGTAGGATA 57.236 36.000 0.00 0.00 0.00 2.59
424 425 6.659745 TTGCACACGTATATTAGGTAGGAT 57.340 37.500 0.00 0.00 0.00 3.24
425 426 6.659745 ATTGCACACGTATATTAGGTAGGA 57.340 37.500 0.00 0.00 0.00 2.94
426 427 8.821147 TTAATTGCACACGTATATTAGGTAGG 57.179 34.615 0.00 0.00 0.00 3.18
435 436 9.634163 CAGGAGTATATTAATTGCACACGTATA 57.366 33.333 0.00 0.00 0.00 1.47
436 437 7.117812 GCAGGAGTATATTAATTGCACACGTAT 59.882 37.037 0.00 0.00 0.00 3.06
437 438 6.422701 GCAGGAGTATATTAATTGCACACGTA 59.577 38.462 0.00 0.00 0.00 3.57
438 439 5.236478 GCAGGAGTATATTAATTGCACACGT 59.764 40.000 0.00 0.00 0.00 4.49
439 440 5.334105 GGCAGGAGTATATTAATTGCACACG 60.334 44.000 7.98 0.00 0.00 4.49
440 441 5.530915 TGGCAGGAGTATATTAATTGCACAC 59.469 40.000 7.98 0.00 0.00 3.82
441 442 5.689835 TGGCAGGAGTATATTAATTGCACA 58.310 37.500 7.98 2.32 0.00 4.57
442 443 6.824305 ATGGCAGGAGTATATTAATTGCAC 57.176 37.500 7.98 0.00 0.00 4.57
443 444 6.777091 ACAATGGCAGGAGTATATTAATTGCA 59.223 34.615 7.98 0.00 0.00 4.08
444 445 7.219484 ACAATGGCAGGAGTATATTAATTGC 57.781 36.000 0.00 0.00 0.00 3.56
445 446 9.507329 ACTACAATGGCAGGAGTATATTAATTG 57.493 33.333 0.00 0.00 0.00 2.32
446 447 9.507329 CACTACAATGGCAGGAGTATATTAATT 57.493 33.333 0.00 0.00 0.00 1.40
447 448 8.103305 CCACTACAATGGCAGGAGTATATTAAT 58.897 37.037 0.00 0.00 31.52 1.40
448 449 7.071950 ACCACTACAATGGCAGGAGTATATTAA 59.928 37.037 0.00 0.00 44.33 1.40
449 450 6.557253 ACCACTACAATGGCAGGAGTATATTA 59.443 38.462 0.00 0.00 44.33 0.98
450 451 5.369699 ACCACTACAATGGCAGGAGTATATT 59.630 40.000 0.00 0.00 44.33 1.28
451 452 4.907875 ACCACTACAATGGCAGGAGTATAT 59.092 41.667 0.00 0.00 44.33 0.86
452 453 4.295201 ACCACTACAATGGCAGGAGTATA 58.705 43.478 0.00 0.00 44.33 1.47
453 454 3.115390 ACCACTACAATGGCAGGAGTAT 58.885 45.455 0.00 0.00 44.33 2.12
454 455 2.546899 ACCACTACAATGGCAGGAGTA 58.453 47.619 0.00 0.00 44.33 2.59
455 456 1.362224 ACCACTACAATGGCAGGAGT 58.638 50.000 0.00 0.00 44.33 3.85
456 457 2.496899 AACCACTACAATGGCAGGAG 57.503 50.000 0.00 0.00 44.33 3.69
457 458 2.375174 AGAAACCACTACAATGGCAGGA 59.625 45.455 0.00 0.00 44.33 3.86
458 459 2.795329 AGAAACCACTACAATGGCAGG 58.205 47.619 0.00 0.00 44.33 4.85
459 460 6.515272 AATAAGAAACCACTACAATGGCAG 57.485 37.500 0.00 0.00 44.33 4.85
460 461 6.491745 TCAAATAAGAAACCACTACAATGGCA 59.508 34.615 0.00 0.00 44.33 4.92
461 462 6.919721 TCAAATAAGAAACCACTACAATGGC 58.080 36.000 0.00 0.00 44.33 4.40
462 463 9.757227 TTTTCAAATAAGAAACCACTACAATGG 57.243 29.630 0.00 0.00 46.10 3.16
547 548 2.697761 CCACGACGGACGACCAGAT 61.698 63.158 6.90 0.00 45.77 2.90
1152 4308 1.686355 CGAGACCTACAGGAGCAGAT 58.314 55.000 1.29 0.00 38.94 2.90
2017 5176 4.284829 TCCATGACAATGAACAGCACTA 57.715 40.909 0.00 0.00 35.67 2.74
2149 5311 9.506018 GGAACCATTTAGTAGTAGGTTTTTGTA 57.494 33.333 0.00 0.00 42.26 2.41
2454 5640 5.615925 ACTACCCATCAAAGTAGTCATCC 57.384 43.478 0.00 0.00 44.54 3.51
2506 5692 4.333913 AAGATAGAACTGCGAGCATCAT 57.666 40.909 0.00 0.00 33.17 2.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.