Multiple sequence alignment - TraesCS6B01G056600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G056600 chr6B 100.000 4341 0 0 1 4341 37233307 37228967 0.000000e+00 8017.0
1 TraesCS6B01G056600 chr6B 93.007 1001 54 11 1 988 392484210 392485207 0.000000e+00 1447.0
2 TraesCS6B01G056600 chr6B 92.492 999 61 10 1 989 6885680 6884686 0.000000e+00 1417.0
3 TraesCS6B01G056600 chr6B 79.417 1030 181 17 1657 2663 59744343 59745364 0.000000e+00 699.0
4 TraesCS6B01G056600 chr6B 78.000 1050 176 32 1643 2663 36228493 36227470 3.710000e-170 608.0
5 TraesCS6B01G056600 chr6B 76.950 577 112 14 998 1557 38011180 38011752 4.220000e-80 309.0
6 TraesCS6B01G056600 chr6B 78.175 504 92 12 2727 3224 59745596 59746087 5.450000e-79 305.0
7 TraesCS6B01G056600 chr6B 81.884 138 21 2 3135 3272 36212414 36212281 3.550000e-21 113.0
8 TraesCS6B01G056600 chr2D 94.573 995 47 2 1 989 104151579 104150586 0.000000e+00 1531.0
9 TraesCS6B01G056600 chr2D 92.274 906 69 1 3437 4341 56857082 56856177 0.000000e+00 1284.0
10 TraesCS6B01G056600 chr2D 92.163 906 70 1 3437 4341 648978082 648977177 0.000000e+00 1279.0
11 TraesCS6B01G056600 chr7A 93.775 996 57 5 1 992 250815943 250814949 0.000000e+00 1491.0
12 TraesCS6B01G056600 chr7A 73.288 292 65 9 1926 2206 4743318 4743607 1.290000e-15 95.3
13 TraesCS6B01G056600 chr3D 93.254 1008 56 9 1 996 565800811 565799804 0.000000e+00 1474.0
14 TraesCS6B01G056600 chr3D 78.195 133 21 6 1757 1885 600173361 600173489 1.290000e-10 78.7
15 TraesCS6B01G056600 chr7B 91.830 967 55 12 33 988 6429641 6428688 0.000000e+00 1327.0
16 TraesCS6B01G056600 chr3A 91.120 991 66 12 1 981 38374993 38374015 0.000000e+00 1323.0
17 TraesCS6B01G056600 chr6A 91.883 961 55 9 33 983 76961970 76961023 0.000000e+00 1321.0
18 TraesCS6B01G056600 chr4B 91.624 967 55 12 33 988 42527515 42528466 0.000000e+00 1314.0
19 TraesCS6B01G056600 chr1D 92.494 906 67 1 3437 4341 214288577 214289482 0.000000e+00 1295.0
20 TraesCS6B01G056600 chr7D 92.384 906 68 1 3437 4341 503024418 503023513 0.000000e+00 1290.0
21 TraesCS6B01G056600 chr5D 92.172 907 69 2 3437 4341 442477543 442476637 0.000000e+00 1280.0
22 TraesCS6B01G056600 chr5D 92.053 906 71 1 3437 4341 496596532 496597437 0.000000e+00 1273.0
23 TraesCS6B01G056600 chr4D 92.163 906 70 1 3437 4341 21634519 21635424 0.000000e+00 1279.0
24 TraesCS6B01G056600 chr4D 92.146 904 69 2 3437 4339 396656604 396655702 0.000000e+00 1275.0
25 TraesCS6B01G056600 chr4D 92.053 906 71 1 3437 4341 484303858 484302953 0.000000e+00 1273.0
26 TraesCS6B01G056600 chr6D 80.208 1728 284 37 1644 3342 22250415 22252113 0.000000e+00 1243.0
27 TraesCS6B01G056600 chr6D 80.357 336 48 9 2864 3197 22094329 22094010 5.610000e-59 239.0
28 TraesCS6B01G056600 chr6D 80.435 138 23 2 3135 3272 21987400 21987267 7.680000e-18 102.0
29 TraesCS6B01G056600 chrUn 71.799 578 129 23 1671 2231 48205234 48205794 2.720000e-27 134.0
30 TraesCS6B01G056600 chr4A 71.799 578 129 23 1671 2231 605376457 605375897 2.720000e-27 134.0
31 TraesCS6B01G056600 chr4A 72.154 492 96 26 1743 2218 738783691 738783225 1.280000e-20 111.0
32 TraesCS6B01G056600 chr5B 71.880 569 125 21 1675 2224 9356860 9357412 9.800000e-27 132.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G056600 chr6B 37228967 37233307 4340 True 8017 8017 100.000 1 4341 1 chr6B.!!$R4 4340
1 TraesCS6B01G056600 chr6B 392484210 392485207 997 False 1447 1447 93.007 1 988 1 chr6B.!!$F2 987
2 TraesCS6B01G056600 chr6B 6884686 6885680 994 True 1417 1417 92.492 1 989 1 chr6B.!!$R1 988
3 TraesCS6B01G056600 chr6B 36227470 36228493 1023 True 608 608 78.000 1643 2663 1 chr6B.!!$R3 1020
4 TraesCS6B01G056600 chr6B 59744343 59746087 1744 False 502 699 78.796 1657 3224 2 chr6B.!!$F3 1567
5 TraesCS6B01G056600 chr6B 38011180 38011752 572 False 309 309 76.950 998 1557 1 chr6B.!!$F1 559
6 TraesCS6B01G056600 chr2D 104150586 104151579 993 True 1531 1531 94.573 1 989 1 chr2D.!!$R2 988
7 TraesCS6B01G056600 chr2D 56856177 56857082 905 True 1284 1284 92.274 3437 4341 1 chr2D.!!$R1 904
8 TraesCS6B01G056600 chr2D 648977177 648978082 905 True 1279 1279 92.163 3437 4341 1 chr2D.!!$R3 904
9 TraesCS6B01G056600 chr7A 250814949 250815943 994 True 1491 1491 93.775 1 992 1 chr7A.!!$R1 991
10 TraesCS6B01G056600 chr3D 565799804 565800811 1007 True 1474 1474 93.254 1 996 1 chr3D.!!$R1 995
11 TraesCS6B01G056600 chr7B 6428688 6429641 953 True 1327 1327 91.830 33 988 1 chr7B.!!$R1 955
12 TraesCS6B01G056600 chr3A 38374015 38374993 978 True 1323 1323 91.120 1 981 1 chr3A.!!$R1 980
13 TraesCS6B01G056600 chr6A 76961023 76961970 947 True 1321 1321 91.883 33 983 1 chr6A.!!$R1 950
14 TraesCS6B01G056600 chr4B 42527515 42528466 951 False 1314 1314 91.624 33 988 1 chr4B.!!$F1 955
15 TraesCS6B01G056600 chr1D 214288577 214289482 905 False 1295 1295 92.494 3437 4341 1 chr1D.!!$F1 904
16 TraesCS6B01G056600 chr7D 503023513 503024418 905 True 1290 1290 92.384 3437 4341 1 chr7D.!!$R1 904
17 TraesCS6B01G056600 chr5D 442476637 442477543 906 True 1280 1280 92.172 3437 4341 1 chr5D.!!$R1 904
18 TraesCS6B01G056600 chr5D 496596532 496597437 905 False 1273 1273 92.053 3437 4341 1 chr5D.!!$F1 904
19 TraesCS6B01G056600 chr4D 21634519 21635424 905 False 1279 1279 92.163 3437 4341 1 chr4D.!!$F1 904
20 TraesCS6B01G056600 chr4D 396655702 396656604 902 True 1275 1275 92.146 3437 4339 1 chr4D.!!$R1 902
21 TraesCS6B01G056600 chr4D 484302953 484303858 905 True 1273 1273 92.053 3437 4341 1 chr4D.!!$R2 904
22 TraesCS6B01G056600 chr6D 22250415 22252113 1698 False 1243 1243 80.208 1644 3342 1 chr6D.!!$F1 1698

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
993 1023 1.098050 GCAGATCGTTGCCCTTTGAT 58.902 50.0 0.0 0.0 38.13 2.57 F
1528 1571 0.033601 AACCAACCTCACAACAGGCA 60.034 50.0 0.0 0.0 36.98 4.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2902 3173 0.033796 CCACCCTGATCAGCACCATT 60.034 55.0 17.76 0.00 0.00 3.16 R
3382 3668 0.031721 GCCTGATTAGCTTGGCATGC 59.968 55.0 16.84 16.84 44.34 4.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
147 157 2.191786 CTACAACCATGGCCACGGGA 62.192 60.000 27.60 7.91 0.00 5.14
226 236 4.588528 ACCATGGACACAAAAAGCTACATT 59.411 37.500 21.47 0.00 0.00 2.71
264 274 5.088739 GCTTCAACCAGACAATGAAATACG 58.911 41.667 0.00 0.00 33.08 3.06
306 316 1.412343 ACAAAAAGCTTCAACCCGCAT 59.588 42.857 0.00 0.00 0.00 4.73
634 647 1.891919 GTGCTGCAACGACAAGGGA 60.892 57.895 2.77 0.00 0.00 4.20
705 718 4.649705 TTCTGCTGGACCGGGGGA 62.650 66.667 6.32 0.00 0.00 4.81
772 785 1.301558 GGGATGGAGAGCGCATCTG 60.302 63.158 11.47 0.00 38.84 2.90
992 1022 1.298157 CGCAGATCGTTGCCCTTTGA 61.298 55.000 1.66 0.00 41.01 2.69
993 1023 1.098050 GCAGATCGTTGCCCTTTGAT 58.902 50.000 0.00 0.00 38.13 2.57
995 1025 2.682856 GCAGATCGTTGCCCTTTGATTA 59.317 45.455 0.00 0.00 38.13 1.75
996 1026 3.316308 GCAGATCGTTGCCCTTTGATTAT 59.684 43.478 0.00 0.00 38.13 1.28
1001 1031 3.446873 TCGTTGCCCTTTGATTATTGCAT 59.553 39.130 0.00 0.00 0.00 3.96
1004 1034 2.158928 TGCCCTTTGATTATTGCATGGC 60.159 45.455 0.00 0.00 0.00 4.40
1010 1040 1.605232 TGATTATTGCATGGCAGAGCG 59.395 47.619 9.70 0.00 40.61 5.03
1011 1041 0.956633 ATTATTGCATGGCAGAGCGG 59.043 50.000 9.70 0.00 40.61 5.52
1029 1059 1.140816 GGCGAGGCAGAATCGTATTC 58.859 55.000 0.00 0.00 42.13 1.75
1033 1063 3.304257 CGAGGCAGAATCGTATTCTCTG 58.696 50.000 7.01 0.00 39.69 3.35
1041 1071 6.219473 CAGAATCGTATTCTCTGCCAACTAT 58.781 40.000 7.01 0.00 30.91 2.12
1051 1081 2.430367 CCAACTATAGGCCCCCGC 59.570 66.667 0.00 0.00 0.00 6.13
1053 1083 0.834687 CCAACTATAGGCCCCCGCTA 60.835 60.000 0.00 0.00 34.44 4.26
1059 1089 1.489560 ATAGGCCCCCGCTACCATTC 61.490 60.000 0.00 0.00 34.44 2.67
1075 1105 2.208431 CATTCGACATCTTCTCCTGCC 58.792 52.381 0.00 0.00 0.00 4.85
1077 1107 0.324738 TCGACATCTTCTCCTGCCCT 60.325 55.000 0.00 0.00 0.00 5.19
1080 1110 2.637947 GACATCTTCTCCTGCCCTTTC 58.362 52.381 0.00 0.00 0.00 2.62
1081 1111 2.238395 GACATCTTCTCCTGCCCTTTCT 59.762 50.000 0.00 0.00 0.00 2.52
1082 1112 2.646798 ACATCTTCTCCTGCCCTTTCTT 59.353 45.455 0.00 0.00 0.00 2.52
1086 1116 1.136329 TCTCCTGCCCTTTCTTGCCT 61.136 55.000 0.00 0.00 0.00 4.75
1088 1118 0.188342 TCCTGCCCTTTCTTGCCTTT 59.812 50.000 0.00 0.00 0.00 3.11
1094 1124 2.250924 CCCTTTCTTGCCTTTGTCCAT 58.749 47.619 0.00 0.00 0.00 3.41
1096 1126 2.892852 CCTTTCTTGCCTTTGTCCATCA 59.107 45.455 0.00 0.00 0.00 3.07
1109 1139 2.573009 TGTCCATCAAAGATGAGCTCCA 59.427 45.455 12.15 0.00 39.39 3.86
1110 1140 3.201487 TGTCCATCAAAGATGAGCTCCAT 59.799 43.478 12.15 4.76 39.39 3.41
1128 1158 2.219458 CATCTCACTGATGGCATGTCC 58.781 52.381 3.81 0.00 46.55 4.02
1144 1174 1.965643 TGTCCTACAACTACAACGGCT 59.034 47.619 0.00 0.00 0.00 5.52
1146 1176 1.076332 CCTACAACTACAACGGCTGC 58.924 55.000 0.00 0.00 0.00 5.25
1147 1177 1.076332 CTACAACTACAACGGCTGCC 58.924 55.000 9.11 9.11 0.00 4.85
1149 1179 1.599518 CAACTACAACGGCTGCCCA 60.600 57.895 14.12 0.00 0.00 5.36
1167 1197 3.335356 AATCCCTCCCGCTGCACTG 62.335 63.158 0.00 0.00 0.00 3.66
1179 1209 1.805869 CTGCACTGAAGACCCTTCTG 58.194 55.000 10.65 10.65 29.98 3.02
1184 1214 3.307339 GCACTGAAGACCCTTCTGAAGAT 60.307 47.826 18.68 6.42 29.98 2.40
1192 1222 1.409381 CCCTTCTGAAGATCCCCAAGC 60.409 57.143 18.68 0.00 0.00 4.01
1195 1225 1.956869 TCTGAAGATCCCCAAGCTGA 58.043 50.000 0.00 0.00 0.00 4.26
1197 1227 1.558756 CTGAAGATCCCCAAGCTGACT 59.441 52.381 0.00 0.00 0.00 3.41
1198 1228 1.280133 TGAAGATCCCCAAGCTGACTG 59.720 52.381 0.00 0.00 0.00 3.51
1200 1230 1.661463 AGATCCCCAAGCTGACTGAA 58.339 50.000 0.00 0.00 0.00 3.02
1203 1233 1.434188 TCCCCAAGCTGACTGAAGAA 58.566 50.000 0.00 0.00 0.00 2.52
1206 1236 1.538950 CCCAAGCTGACTGAAGAAAGC 59.461 52.381 0.00 0.00 35.86 3.51
1207 1237 2.224606 CCAAGCTGACTGAAGAAAGCA 58.775 47.619 10.23 0.00 38.14 3.91
1208 1238 2.225963 CCAAGCTGACTGAAGAAAGCAG 59.774 50.000 10.23 0.00 38.14 4.24
1209 1239 1.521580 AGCTGACTGAAGAAAGCAGC 58.478 50.000 0.00 0.00 42.55 5.25
1215 1245 1.227943 TGAAGAAAGCAGCGCCACT 60.228 52.632 2.29 0.00 0.00 4.00
1220 1250 2.862347 GAAAGCAGCGCCACTGATGC 62.862 60.000 2.29 6.32 46.64 3.91
1230 1261 1.073216 CCACTGATGCAGACGTCGAC 61.073 60.000 10.46 5.18 35.18 4.20
1245 1276 2.581354 GACGCTGGCCATGTCTCT 59.419 61.111 24.01 0.00 0.00 3.10
1263 1294 1.273606 TCTGGCCTTCTCTTTGTCTCG 59.726 52.381 3.32 0.00 0.00 4.04
1278 1309 2.038975 TCGGAGAGGGACCAAGGG 59.961 66.667 0.00 0.00 0.00 3.95
1281 1312 1.925972 GGAGAGGGACCAAGGGCTT 60.926 63.158 0.00 0.00 0.00 4.35
1287 1318 1.761174 GGACCAAGGGCTTGAGACA 59.239 57.895 0.00 0.00 42.93 3.41
1288 1319 0.606673 GGACCAAGGGCTTGAGACAC 60.607 60.000 0.00 0.00 42.93 3.67
1290 1321 1.623811 GACCAAGGGCTTGAGACACTA 59.376 52.381 0.00 0.00 42.93 2.74
1292 1323 2.026822 ACCAAGGGCTTGAGACACTATG 60.027 50.000 0.00 0.00 42.93 2.23
1294 1325 0.176680 AGGGCTTGAGACACTATGCG 59.823 55.000 0.00 0.00 0.00 4.73
1296 1327 1.281899 GGCTTGAGACACTATGCGTC 58.718 55.000 0.00 0.00 0.00 5.19
1297 1328 1.404181 GGCTTGAGACACTATGCGTCA 60.404 52.381 0.00 0.00 35.77 4.35
1298 1329 2.337583 GCTTGAGACACTATGCGTCAA 58.662 47.619 0.00 0.00 35.77 3.18
1303 1334 3.243737 TGAGACACTATGCGTCAACTTGT 60.244 43.478 0.00 0.00 35.77 3.16
1305 1336 2.143122 ACACTATGCGTCAACTTGTGG 58.857 47.619 0.00 0.00 0.00 4.17
1312 1343 1.268032 GCGTCAACTTGTGGTTCAGTG 60.268 52.381 0.00 0.00 35.74 3.66
1313 1344 1.268032 CGTCAACTTGTGGTTCAGTGC 60.268 52.381 0.00 0.00 35.74 4.40
1317 1348 2.620115 CAACTTGTGGTTCAGTGCTGAT 59.380 45.455 2.47 0.00 39.64 2.90
1318 1349 2.224606 ACTTGTGGTTCAGTGCTGATG 58.775 47.619 2.47 0.00 39.64 3.07
1319 1350 1.538512 CTTGTGGTTCAGTGCTGATGG 59.461 52.381 2.47 0.00 39.64 3.51
1320 1351 0.890542 TGTGGTTCAGTGCTGATGGC 60.891 55.000 2.47 0.00 39.64 4.40
1333 1364 1.004044 CTGATGGCAAGGTCAAGGTCT 59.996 52.381 0.00 0.00 0.00 3.85
1334 1365 1.425066 TGATGGCAAGGTCAAGGTCTT 59.575 47.619 0.00 0.00 0.00 3.01
1335 1366 2.087646 GATGGCAAGGTCAAGGTCTTC 58.912 52.381 0.00 0.00 0.00 2.87
1336 1367 0.843309 TGGCAAGGTCAAGGTCTTCA 59.157 50.000 0.00 0.00 0.00 3.02
1341 1384 1.821088 AGGTCAAGGTCTTCACCCTT 58.179 50.000 0.06 0.00 45.12 3.95
1350 1393 0.400213 TCTTCACCCTTGCCGACATT 59.600 50.000 0.00 0.00 0.00 2.71
1353 1396 1.698506 TCACCCTTGCCGACATTTTT 58.301 45.000 0.00 0.00 0.00 1.94
1354 1397 1.339610 TCACCCTTGCCGACATTTTTG 59.660 47.619 0.00 0.00 0.00 2.44
1362 1405 0.454957 CCGACATTTTTGGCTCAGCG 60.455 55.000 0.00 0.00 0.00 5.18
1369 1412 0.179032 TTTTGGCTCAGCGGACTTCA 60.179 50.000 0.00 0.00 0.00 3.02
1374 1417 4.742201 TCAGCGGACTTCAGCGGC 62.742 66.667 0.00 0.00 41.91 6.53
1412 1455 2.438254 CTGCATTGGCGGTGGCTA 60.438 61.111 0.00 0.00 45.35 3.93
1413 1456 2.749839 TGCATTGGCGGTGGCTAC 60.750 61.111 0.00 0.00 45.35 3.58
1416 1459 1.377202 CATTGGCGGTGGCTACAGT 60.377 57.895 1.52 0.00 39.81 3.55
1419 1462 1.473497 TTGGCGGTGGCTACAGTGTA 61.473 55.000 1.52 2.36 39.81 2.90
1422 1465 1.885163 GCGGTGGCTACAGTGTAGGT 61.885 60.000 27.48 0.00 35.83 3.08
1424 1467 1.820519 CGGTGGCTACAGTGTAGGTTA 59.179 52.381 27.48 0.00 0.00 2.85
1427 1470 3.490419 GGTGGCTACAGTGTAGGTTATCG 60.490 52.174 27.48 5.85 0.00 2.92
1428 1471 3.129988 GTGGCTACAGTGTAGGTTATCGT 59.870 47.826 27.48 0.00 0.00 3.73
1430 1473 4.949238 TGGCTACAGTGTAGGTTATCGTAA 59.051 41.667 27.48 2.15 0.00 3.18
1432 1475 4.966366 GCTACAGTGTAGGTTATCGTAACG 59.034 45.833 27.48 3.16 0.00 3.18
1437 1480 4.022475 GTGTAGGTTATCGTAACGTCGAC 58.978 47.826 5.18 5.18 42.56 4.20
1438 1481 3.932710 TGTAGGTTATCGTAACGTCGACT 59.067 43.478 14.70 0.00 42.56 4.18
1442 1485 4.268884 AGGTTATCGTAACGTCGACTACTC 59.731 45.833 14.70 1.09 42.56 2.59
1478 1521 4.020617 CAAGGAGGCGGTGCAGGA 62.021 66.667 0.00 0.00 0.00 3.86
1480 1523 2.606587 AAGGAGGCGGTGCAGGAAT 61.607 57.895 0.00 0.00 0.00 3.01
1488 1531 2.472909 GGTGCAGGAATGCCGTAGC 61.473 63.158 0.00 0.00 39.96 3.58
1491 1534 2.203209 CAGGAATGCCGTAGCCCC 60.203 66.667 0.00 0.00 39.96 5.80
1497 1540 4.715130 TGCCGTAGCCCCTGGACT 62.715 66.667 0.00 0.00 38.69 3.85
1518 1561 2.223876 TGTCGTGTACAGAACCAACCTC 60.224 50.000 0.00 0.00 33.01 3.85
1520 1563 2.132762 CGTGTACAGAACCAACCTCAC 58.867 52.381 0.00 0.00 0.00 3.51
1521 1564 2.482316 CGTGTACAGAACCAACCTCACA 60.482 50.000 0.00 0.00 0.00 3.58
1524 1567 2.799126 ACAGAACCAACCTCACAACA 57.201 45.000 0.00 0.00 0.00 3.33
1528 1571 0.033601 AACCAACCTCACAACAGGCA 60.034 50.000 0.00 0.00 36.98 4.75
1533 1576 0.532862 ACCTCACAACAGGCAAGACG 60.533 55.000 0.00 0.00 36.98 4.18
1534 1577 1.230635 CCTCACAACAGGCAAGACGG 61.231 60.000 0.00 0.00 0.00 4.79
1536 1579 0.396435 TCACAACAGGCAAGACGGAT 59.604 50.000 0.00 0.00 0.00 4.18
1557 1600 1.740380 CGCCTCACTCCACAAGGTATG 60.740 57.143 0.00 0.00 35.89 2.39
1558 1601 2.014068 GCCTCACTCCACAAGGTATGC 61.014 57.143 0.00 0.00 35.89 3.14
1559 1602 1.556911 CCTCACTCCACAAGGTATGCT 59.443 52.381 0.00 0.00 35.89 3.79
1560 1603 2.026822 CCTCACTCCACAAGGTATGCTT 60.027 50.000 0.00 0.00 35.89 3.91
1561 1604 3.265791 CTCACTCCACAAGGTATGCTTC 58.734 50.000 0.00 0.00 35.89 3.86
1562 1605 2.637382 TCACTCCACAAGGTATGCTTCA 59.363 45.455 0.00 0.00 35.89 3.02
1563 1606 3.264193 TCACTCCACAAGGTATGCTTCAT 59.736 43.478 0.00 0.00 35.89 2.57
1564 1607 3.376234 CACTCCACAAGGTATGCTTCATG 59.624 47.826 0.00 0.00 35.89 3.07
1565 1608 3.009473 ACTCCACAAGGTATGCTTCATGT 59.991 43.478 0.00 0.00 35.89 3.21
1566 1609 4.225042 ACTCCACAAGGTATGCTTCATGTA 59.775 41.667 0.00 0.00 35.89 2.29
1567 1610 4.513442 TCCACAAGGTATGCTTCATGTAC 58.487 43.478 0.00 0.00 35.89 2.90
1568 1611 4.019771 TCCACAAGGTATGCTTCATGTACA 60.020 41.667 0.00 0.00 35.89 2.90
1569 1612 4.699735 CCACAAGGTATGCTTCATGTACAA 59.300 41.667 0.00 0.00 0.00 2.41
1570 1613 5.182950 CCACAAGGTATGCTTCATGTACAAA 59.817 40.000 0.00 0.00 0.00 2.83
1571 1614 6.127647 CCACAAGGTATGCTTCATGTACAAAT 60.128 38.462 0.00 0.00 0.00 2.32
1572 1615 6.748658 CACAAGGTATGCTTCATGTACAAATG 59.251 38.462 0.00 0.00 0.00 2.32
1573 1616 6.127647 ACAAGGTATGCTTCATGTACAAATGG 60.128 38.462 0.00 0.00 0.00 3.16
1574 1617 5.754782 AGGTATGCTTCATGTACAAATGGA 58.245 37.500 0.00 0.00 0.00 3.41
1575 1618 6.367983 AGGTATGCTTCATGTACAAATGGAT 58.632 36.000 0.00 3.50 0.00 3.41
1576 1619 7.517320 AGGTATGCTTCATGTACAAATGGATA 58.483 34.615 0.00 2.57 0.00 2.59
1577 1620 7.998383 AGGTATGCTTCATGTACAAATGGATAA 59.002 33.333 0.00 0.00 0.00 1.75
1578 1621 8.629158 GGTATGCTTCATGTACAAATGGATAAA 58.371 33.333 0.00 0.00 0.00 1.40
1610 1653 9.778741 TGTATGTTTAACTTGTCTTCAATCTCT 57.221 29.630 0.00 0.00 32.82 3.10
1613 1656 7.930217 TGTTTAACTTGTCTTCAATCTCTTGG 58.070 34.615 0.00 0.00 32.95 3.61
1614 1657 6.560253 TTAACTTGTCTTCAATCTCTTGGC 57.440 37.500 0.00 0.00 32.95 4.52
1615 1658 4.090761 ACTTGTCTTCAATCTCTTGGCA 57.909 40.909 0.00 0.00 32.95 4.92
1616 1659 4.660168 ACTTGTCTTCAATCTCTTGGCAT 58.340 39.130 0.00 0.00 32.95 4.40
1617 1660 5.075493 ACTTGTCTTCAATCTCTTGGCATT 58.925 37.500 0.00 0.00 32.95 3.56
1618 1661 5.182760 ACTTGTCTTCAATCTCTTGGCATTC 59.817 40.000 0.00 0.00 32.95 2.67
1619 1662 4.012374 TGTCTTCAATCTCTTGGCATTCC 58.988 43.478 0.00 0.00 32.95 3.01
1620 1663 3.379688 GTCTTCAATCTCTTGGCATTCCC 59.620 47.826 0.00 0.00 32.95 3.97
1621 1664 3.010472 TCTTCAATCTCTTGGCATTCCCA 59.990 43.478 0.00 0.00 43.51 4.37
1622 1665 3.675348 TCAATCTCTTGGCATTCCCAT 57.325 42.857 0.00 0.00 44.89 4.00
1623 1666 3.985127 TCAATCTCTTGGCATTCCCATT 58.015 40.909 0.00 0.00 44.89 3.16
1624 1667 5.128033 TCAATCTCTTGGCATTCCCATTA 57.872 39.130 0.00 0.00 44.89 1.90
1625 1668 5.517924 TCAATCTCTTGGCATTCCCATTAA 58.482 37.500 0.00 0.00 44.89 1.40
1626 1669 6.138263 TCAATCTCTTGGCATTCCCATTAAT 58.862 36.000 0.00 0.00 44.89 1.40
1627 1670 6.266103 TCAATCTCTTGGCATTCCCATTAATC 59.734 38.462 0.00 0.00 44.89 1.75
1628 1671 5.128033 TCTCTTGGCATTCCCATTAATCA 57.872 39.130 0.00 0.00 44.89 2.57
1629 1672 5.708544 TCTCTTGGCATTCCCATTAATCAT 58.291 37.500 0.00 0.00 44.89 2.45
1630 1673 6.851318 TCTCTTGGCATTCCCATTAATCATA 58.149 36.000 0.00 0.00 44.89 2.15
1631 1674 7.472741 TCTCTTGGCATTCCCATTAATCATAT 58.527 34.615 0.00 0.00 44.89 1.78
1632 1675 8.613923 TCTCTTGGCATTCCCATTAATCATATA 58.386 33.333 0.00 0.00 44.89 0.86
1633 1676 8.579850 TCTTGGCATTCCCATTAATCATATAC 57.420 34.615 0.00 0.00 44.89 1.47
1634 1677 8.393259 TCTTGGCATTCCCATTAATCATATACT 58.607 33.333 0.00 0.00 44.89 2.12
1635 1678 8.954834 TTGGCATTCCCATTAATCATATACTT 57.045 30.769 0.00 0.00 44.89 2.24
1636 1679 8.352137 TGGCATTCCCATTAATCATATACTTG 57.648 34.615 0.00 0.00 39.18 3.16
1637 1680 7.093814 TGGCATTCCCATTAATCATATACTTGC 60.094 37.037 0.00 0.00 39.18 4.01
1638 1681 7.093814 GGCATTCCCATTAATCATATACTTGCA 60.094 37.037 0.00 0.00 0.00 4.08
1639 1682 7.756722 GCATTCCCATTAATCATATACTTGCAC 59.243 37.037 0.00 0.00 0.00 4.57
1640 1683 7.433708 TTCCCATTAATCATATACTTGCACG 57.566 36.000 0.00 0.00 0.00 5.34
1641 1684 6.764379 TCCCATTAATCATATACTTGCACGA 58.236 36.000 0.00 0.00 0.00 4.35
1681 1724 0.243636 GGGTGTTTGATTTGAGCCCG 59.756 55.000 0.00 0.00 0.00 6.13
1705 1748 2.282958 TCGCCGTCAGGGAAGACT 60.283 61.111 0.00 0.00 38.47 3.24
1708 1751 1.079750 GCCGTCAGGGAAGACTGTC 60.080 63.158 0.00 0.00 39.48 3.51
1714 1757 0.888619 CAGGGAAGACTGTCGCAGTA 59.111 55.000 11.60 0.00 45.44 2.74
1729 1772 2.032550 CGCAGTAGCATCATTTCAAGGG 59.967 50.000 0.00 0.00 42.27 3.95
1731 1774 3.314635 GCAGTAGCATCATTTCAAGGGAG 59.685 47.826 0.00 0.00 41.58 4.30
1732 1775 4.521146 CAGTAGCATCATTTCAAGGGAGT 58.479 43.478 0.00 0.00 0.00 3.85
1733 1776 4.946157 CAGTAGCATCATTTCAAGGGAGTT 59.054 41.667 0.00 0.00 0.00 3.01
1756 1805 1.202417 TGGAATGGCGAGATCGAGAAC 60.202 52.381 6.39 0.00 43.02 3.01
1759 1808 0.387202 ATGGCGAGATCGAGAACCTG 59.613 55.000 6.39 0.00 43.02 4.00
1765 1820 2.420372 CGAGATCGAGAACCTGAAGACA 59.580 50.000 0.00 0.00 43.02 3.41
1768 1823 4.277476 AGATCGAGAACCTGAAGACAGAT 58.723 43.478 0.00 0.00 46.03 2.90
1802 1857 2.093106 ACGTGGATAGTGAGGAGTGTC 58.907 52.381 0.00 0.00 0.00 3.67
1813 1868 2.930562 GAGTGTCAGGGCCTGGGT 60.931 66.667 32.23 14.90 31.51 4.51
1824 1879 2.125106 CCTGGGTCGCAAGCTACC 60.125 66.667 7.18 7.18 34.85 3.18
1828 1883 4.637771 GGTCGCAAGCTACCCATT 57.362 55.556 4.52 0.00 37.18 3.16
1960 2021 2.949177 ACAACATCAGCACCAAGGTA 57.051 45.000 0.00 0.00 0.00 3.08
2026 2087 2.419297 GGCTATCAGTGAGACCAAGGTG 60.419 54.545 0.00 0.00 0.00 4.00
2055 2116 1.299648 CCATCCGCCAGAAGTCCAA 59.700 57.895 0.00 0.00 0.00 3.53
2058 2119 1.207089 CATCCGCCAGAAGTCCAAGTA 59.793 52.381 0.00 0.00 0.00 2.24
2074 2135 0.950555 AGTACAGCGACGTCCGTGTA 60.951 55.000 16.79 16.79 41.15 2.90
2075 2136 0.110238 GTACAGCGACGTCCGTGTAA 60.110 55.000 20.55 7.66 41.15 2.41
2105 2172 1.278985 ACCGGCACATTGAGATCTTCA 59.721 47.619 0.00 0.00 0.00 3.02
2120 2190 0.673437 CTTCAACACAAATGCCCCGT 59.327 50.000 0.00 0.00 0.00 5.28
2152 2222 3.506398 TGTACAGATCACCCAGAAGACA 58.494 45.455 0.00 0.00 0.00 3.41
2164 2234 2.487986 CCAGAAGACAAGGCCAGAAAGT 60.488 50.000 5.01 0.00 0.00 2.66
2194 2264 3.365265 CCCTTTGTGCTGGACGGC 61.365 66.667 0.00 0.00 0.00 5.68
2212 2282 1.968017 CGGGCAGCGCATTGGATAT 60.968 57.895 11.47 0.00 0.00 1.63
2264 2346 1.154263 GACGTCGTCCCTCAGAACG 60.154 63.158 14.60 0.00 0.00 3.95
2273 2355 1.230635 CCCTCAGAACGTGCACAAGG 61.231 60.000 18.64 12.09 0.00 3.61
2281 2363 2.310233 CGTGCACAAGGTGGAGTCG 61.310 63.158 18.64 0.00 33.95 4.18
2293 2375 2.654877 GAGTCGCCGGTGAAGGAA 59.345 61.111 21.49 0.00 0.00 3.36
2299 2381 2.264794 CCGGTGAAGGAAGTCGGG 59.735 66.667 0.00 0.00 37.35 5.14
2318 2400 0.036765 GTTGTATCGGGTGTCTGGCA 60.037 55.000 0.00 0.00 0.00 4.92
2341 2423 1.879575 TTCCGACCATCTCCAAGGAT 58.120 50.000 0.00 0.00 0.00 3.24
2356 2438 1.679977 GGATGGCTCCAAGCTTGCA 60.680 57.895 21.43 13.52 41.99 4.08
2359 2441 1.206371 GATGGCTCCAAGCTTGCATTT 59.794 47.619 21.43 2.90 41.99 2.32
2397 2479 2.886859 CGGTGTGGATCGCTGATAC 58.113 57.895 0.00 0.00 35.13 2.24
2410 2492 2.257409 CTGATACCCAAGGGCTGCGT 62.257 60.000 4.70 0.00 39.32 5.24
2411 2493 1.819632 GATACCCAAGGGCTGCGTG 60.820 63.158 4.70 0.00 39.32 5.34
2448 2530 2.811317 GCCGGACAGCGTCTTCTG 60.811 66.667 5.05 0.00 39.86 3.02
2455 2537 1.302033 CAGCGTCTTCTGCCCTGTT 60.302 57.895 0.00 0.00 0.00 3.16
2470 2552 1.410932 CCTGTTTGGAACCAGAACCCA 60.411 52.381 12.52 0.00 38.35 4.51
2506 2600 1.379916 CATCTGTGTTGGCCCCTCA 59.620 57.895 0.00 0.00 0.00 3.86
2518 2612 1.750399 CCCCTCATTCAACGCCCAG 60.750 63.158 0.00 0.00 0.00 4.45
2522 2616 0.449388 CTCATTCAACGCCCAGAAGC 59.551 55.000 0.00 0.00 0.00 3.86
2524 2618 1.074775 ATTCAACGCCCAGAAGCCA 59.925 52.632 0.00 0.00 0.00 4.75
2554 2648 1.895707 CTCCATCCGCAATGCCTCC 60.896 63.158 0.00 0.00 33.71 4.30
2555 2649 2.124193 CCATCCGCAATGCCTCCA 60.124 61.111 0.00 0.00 33.71 3.86
2557 2651 2.517875 ATCCGCAATGCCTCCAGC 60.518 61.111 0.00 0.00 44.14 4.85
2570 2664 2.661537 CCAGCAACGCACGACAGA 60.662 61.111 0.00 0.00 0.00 3.41
2572 2666 1.568612 CCAGCAACGCACGACAGAAT 61.569 55.000 0.00 0.00 0.00 2.40
2588 2685 2.229784 CAGAATGTCAAAAGGCTCACCC 59.770 50.000 0.00 0.00 36.11 4.61
2611 2708 3.560826 CGGGTTCAACAACGCATTT 57.439 47.368 0.00 0.00 43.97 2.32
2644 2741 0.165079 CGGACGGGAACAAATTCGTG 59.835 55.000 0.00 0.00 35.48 4.35
2676 2773 2.038659 GAGGGATGGAGGTGAGAAGAG 58.961 57.143 0.00 0.00 0.00 2.85
2689 2945 2.224378 TGAGAAGAGGCACAAGAACCTG 60.224 50.000 0.00 0.00 36.05 4.00
2705 2961 4.225042 AGAACCTGTACATAATGCTGGACA 59.775 41.667 0.00 0.00 37.64 4.02
2707 2963 2.866156 CCTGTACATAATGCTGGACACG 59.134 50.000 0.00 0.00 35.02 4.49
2710 2966 3.133901 TGTACATAATGCTGGACACGGAT 59.866 43.478 0.00 0.00 35.02 4.18
2713 2969 4.318332 ACATAATGCTGGACACGGATATG 58.682 43.478 0.00 0.00 0.00 1.78
2716 2972 0.980754 TGCTGGACACGGATATGGGT 60.981 55.000 0.00 0.00 0.00 4.51
2717 2973 0.532862 GCTGGACACGGATATGGGTG 60.533 60.000 2.07 2.07 39.98 4.61
2721 2986 3.310193 TGGACACGGATATGGGTGAATA 58.690 45.455 9.16 0.00 37.58 1.75
2725 2990 2.036733 CACGGATATGGGTGAATACGGT 59.963 50.000 0.00 0.00 36.25 4.83
2731 2996 0.035820 TGGGTGAATACGGTGAAGGC 60.036 55.000 0.00 0.00 0.00 4.35
2741 3006 2.283529 GGTGAAGGCTGGGAGACGA 61.284 63.158 0.00 0.00 0.00 4.20
2755 3020 1.446272 GACGAGGCTGACGAAAGGG 60.446 63.158 2.34 0.00 34.70 3.95
2756 3021 2.156051 GACGAGGCTGACGAAAGGGT 62.156 60.000 2.34 0.00 34.70 4.34
2773 3038 0.620556 GGTCATGGACAGACACCCAT 59.379 55.000 0.00 0.00 43.51 4.00
2791 3056 2.764637 ATTGCCAGTGGTCCCCGAAC 62.765 60.000 11.74 0.00 0.00 3.95
2794 3059 3.622826 CAGTGGTCCCCGAACGGT 61.623 66.667 12.23 0.00 0.00 4.83
2815 3080 3.129462 GTGACTGGATCGTCTTCTCATCA 59.871 47.826 2.96 0.00 35.00 3.07
2848 3113 4.809496 CCGCTGGGCTCTGGCAAT 62.809 66.667 3.33 0.00 40.87 3.56
2852 3117 1.605992 CTGGGCTCTGGCAATCTGA 59.394 57.895 0.00 0.00 40.87 3.27
2854 3119 0.627451 TGGGCTCTGGCAATCTGAAT 59.373 50.000 0.00 0.00 40.87 2.57
2861 3126 2.016318 CTGGCAATCTGAATAACGGCA 58.984 47.619 0.00 0.00 0.00 5.69
2862 3127 1.742831 TGGCAATCTGAATAACGGCAC 59.257 47.619 0.00 0.00 0.00 5.01
2863 3128 1.742831 GGCAATCTGAATAACGGCACA 59.257 47.619 0.00 0.00 0.00 4.57
2876 3147 1.673808 CGGCACAGGGTACTACTCCC 61.674 65.000 0.00 0.00 44.90 4.30
2921 3192 0.033796 AATGGTGCTGATCAGGGTGG 60.034 55.000 23.89 0.00 0.00 4.61
2922 3193 2.439156 GGTGCTGATCAGGGTGGC 60.439 66.667 23.89 10.73 0.00 5.01
2924 3195 3.002583 TGCTGATCAGGGTGGCGA 61.003 61.111 23.89 0.00 0.00 5.54
2928 3199 2.268920 GATCAGGGTGGCGAGCAA 59.731 61.111 0.00 0.00 0.00 3.91
2929 3200 1.153086 GATCAGGGTGGCGAGCAAT 60.153 57.895 0.00 0.00 0.00 3.56
2939 3210 4.776322 CGAGCAATGGGGGCGACA 62.776 66.667 0.00 0.00 36.08 4.35
2952 3226 1.209128 GGCGACATCGGTCACATAAG 58.791 55.000 3.08 0.00 44.54 1.73
2962 3236 1.271926 GGTCACATAAGCCACCCAGTT 60.272 52.381 0.00 0.00 0.00 3.16
3016 3290 3.450115 GACCTAGCGGCGGTGTCT 61.450 66.667 23.33 5.87 34.19 3.41
3037 3311 3.838271 GACCCGATCTCGCTGCCA 61.838 66.667 0.00 0.00 38.18 4.92
3052 3326 0.680061 TGCCAAAGTTCATGCATGCA 59.320 45.000 25.04 25.04 0.00 3.96
3109 3386 2.680841 CGACAACCCAGACAACAAGAAA 59.319 45.455 0.00 0.00 0.00 2.52
3115 3392 6.070824 ACAACCCAGACAACAAGAAAAAGAAT 60.071 34.615 0.00 0.00 0.00 2.40
3118 3395 6.154363 ACCCAGACAACAAGAAAAAGAATGAA 59.846 34.615 0.00 0.00 0.00 2.57
3122 3399 7.970061 CAGACAACAAGAAAAAGAATGAAGACA 59.030 33.333 0.00 0.00 0.00 3.41
3138 3415 2.278245 AGACATGATCAAGGGGTTCCA 58.722 47.619 0.00 0.00 34.83 3.53
3143 3420 2.552231 GATCAAGGGGTTCCACCGGG 62.552 65.000 6.32 0.00 39.83 5.73
3198 3475 2.126580 GACGACGACCTTGACCGG 60.127 66.667 0.00 0.00 0.00 5.28
3214 3500 2.746277 GGTGCGACGGAGCCAAAT 60.746 61.111 7.37 0.00 36.02 2.32
3230 3516 2.036217 CCAAATGTGCAGTGGAACATGT 59.964 45.455 0.00 0.00 42.74 3.21
3232 3518 3.374220 AATGTGCAGTGGAACATGTTG 57.626 42.857 17.58 2.55 42.74 3.33
3234 3520 0.670162 GTGCAGTGGAACATGTTGCT 59.330 50.000 27.36 14.53 44.52 3.91
3236 3522 0.038892 GCAGTGGAACATGTTGCTGG 60.039 55.000 27.36 18.10 44.52 4.85
3240 3526 1.888512 GTGGAACATGTTGCTGGACAT 59.111 47.619 27.36 0.00 44.52 3.06
3246 3532 2.812836 ATGTTGCTGGACATGGATCA 57.187 45.000 0.00 0.00 38.75 2.92
3247 3533 2.118313 TGTTGCTGGACATGGATCAG 57.882 50.000 0.00 2.80 0.00 2.90
3248 3534 1.352017 TGTTGCTGGACATGGATCAGT 59.648 47.619 0.00 0.00 0.00 3.41
3249 3535 2.224843 TGTTGCTGGACATGGATCAGTT 60.225 45.455 0.00 0.00 0.00 3.16
3253 3539 2.939103 GCTGGACATGGATCAGTTGTAC 59.061 50.000 0.00 0.00 0.00 2.90
3255 3541 4.578871 CTGGACATGGATCAGTTGTACAA 58.421 43.478 3.59 3.59 33.95 2.41
3261 3547 2.105134 TGGATCAGTTGTACAAACCGGT 59.895 45.455 10.51 0.00 0.00 5.28
3262 3548 2.482721 GGATCAGTTGTACAAACCGGTG 59.517 50.000 8.52 0.00 0.00 4.94
3279 3565 2.259511 GTGTCCGTACGTCCACCC 59.740 66.667 15.21 0.00 0.00 4.61
3280 3566 2.990967 TGTCCGTACGTCCACCCC 60.991 66.667 15.21 0.00 0.00 4.95
3281 3567 4.120331 GTCCGTACGTCCACCCCG 62.120 72.222 15.21 0.00 0.00 5.73
3307 3593 1.812922 CGAGAGCTGGCACATGACC 60.813 63.158 0.00 0.37 38.20 4.02
3318 3604 2.124983 CATGACCGGCCACCTCTG 60.125 66.667 0.00 0.00 0.00 3.35
3331 3617 0.252881 ACCTCTGCATCCCCAAGAGA 60.253 55.000 0.54 0.00 0.00 3.10
3332 3618 0.469070 CCTCTGCATCCCCAAGAGAG 59.531 60.000 0.54 0.00 0.00 3.20
3333 3619 0.179051 CTCTGCATCCCCAAGAGAGC 60.179 60.000 0.00 0.00 0.00 4.09
3334 3620 1.153005 CTGCATCCCCAAGAGAGCC 60.153 63.158 0.00 0.00 0.00 4.70
3342 3628 0.464013 CCCAAGAGAGCCTGCTGATG 60.464 60.000 0.00 0.00 0.00 3.07
3343 3629 0.540454 CCAAGAGAGCCTGCTGATGA 59.460 55.000 0.00 0.00 0.00 2.92
3344 3630 1.654317 CAAGAGAGCCTGCTGATGAC 58.346 55.000 0.00 0.00 0.00 3.06
3345 3631 1.066358 CAAGAGAGCCTGCTGATGACA 60.066 52.381 0.00 0.00 0.00 3.58
3346 3632 1.273759 AGAGAGCCTGCTGATGACAA 58.726 50.000 0.00 0.00 0.00 3.18
3347 3633 1.838715 AGAGAGCCTGCTGATGACAAT 59.161 47.619 0.00 0.00 0.00 2.71
3348 3634 2.239150 AGAGAGCCTGCTGATGACAATT 59.761 45.455 0.00 0.00 0.00 2.32
3349 3635 2.355132 GAGAGCCTGCTGATGACAATTG 59.645 50.000 3.24 3.24 0.00 2.32
3350 3636 0.815734 AGCCTGCTGATGACAATTGC 59.184 50.000 5.05 0.00 0.00 3.56
3351 3637 0.815734 GCCTGCTGATGACAATTGCT 59.184 50.000 5.05 0.00 0.00 3.91
3352 3638 2.019249 GCCTGCTGATGACAATTGCTA 58.981 47.619 5.05 0.00 0.00 3.49
3353 3639 2.223433 GCCTGCTGATGACAATTGCTAC 60.223 50.000 5.05 0.00 0.00 3.58
3354 3640 3.011818 CCTGCTGATGACAATTGCTACA 58.988 45.455 5.05 4.24 0.00 2.74
3355 3641 3.630769 CCTGCTGATGACAATTGCTACAT 59.369 43.478 5.05 9.02 0.00 2.29
3356 3642 4.497507 CCTGCTGATGACAATTGCTACATG 60.498 45.833 14.87 0.00 0.00 3.21
3357 3643 4.263435 TGCTGATGACAATTGCTACATGA 58.737 39.130 14.87 8.30 0.00 3.07
3358 3644 4.701171 TGCTGATGACAATTGCTACATGAA 59.299 37.500 14.87 5.80 0.00 2.57
3359 3645 5.183522 TGCTGATGACAATTGCTACATGAAA 59.816 36.000 14.87 0.00 0.00 2.69
3360 3646 5.514204 GCTGATGACAATTGCTACATGAAAC 59.486 40.000 14.87 4.99 0.00 2.78
3361 3647 6.572167 TGATGACAATTGCTACATGAAACA 57.428 33.333 14.87 6.87 0.00 2.83
3362 3648 7.160547 TGATGACAATTGCTACATGAAACAT 57.839 32.000 14.87 0.00 0.00 2.71
3363 3649 7.030768 TGATGACAATTGCTACATGAAACATG 58.969 34.615 14.87 9.72 0.00 3.21
3364 3650 6.572167 TGACAATTGCTACATGAAACATGA 57.428 33.333 16.86 2.37 0.00 3.07
3365 3651 6.979465 TGACAATTGCTACATGAAACATGAA 58.021 32.000 16.86 3.13 0.00 2.57
3366 3652 7.085746 TGACAATTGCTACATGAAACATGAAG 58.914 34.615 16.86 0.00 0.00 3.02
3367 3653 6.392354 ACAATTGCTACATGAAACATGAAGG 58.608 36.000 16.86 8.23 0.00 3.46
3368 3654 4.439305 TTGCTACATGAAACATGAAGGC 57.561 40.909 16.86 15.61 0.00 4.35
3369 3655 3.419943 TGCTACATGAAACATGAAGGCA 58.580 40.909 16.86 17.38 0.00 4.75
3370 3656 3.191162 TGCTACATGAAACATGAAGGCAC 59.809 43.478 16.86 3.12 0.00 5.01
3371 3657 3.191162 GCTACATGAAACATGAAGGCACA 59.809 43.478 16.86 0.00 0.00 4.57
3372 3658 4.321156 GCTACATGAAACATGAAGGCACAA 60.321 41.667 16.86 0.00 0.00 3.33
3373 3659 4.247267 ACATGAAACATGAAGGCACAAG 57.753 40.909 16.86 0.00 0.00 3.16
3374 3660 3.638160 ACATGAAACATGAAGGCACAAGT 59.362 39.130 16.86 0.00 0.00 3.16
3375 3661 3.713858 TGAAACATGAAGGCACAAGTG 57.286 42.857 0.00 0.00 0.00 3.16
3376 3662 3.023119 TGAAACATGAAGGCACAAGTGT 58.977 40.909 0.00 0.00 0.00 3.55
3377 3663 3.446873 TGAAACATGAAGGCACAAGTGTT 59.553 39.130 0.00 0.00 0.00 3.32
3378 3664 3.441496 AACATGAAGGCACAAGTGTTG 57.559 42.857 0.00 0.00 0.00 3.33
3379 3665 2.378038 ACATGAAGGCACAAGTGTTGT 58.622 42.857 0.00 0.00 46.75 3.32
3380 3666 3.550820 ACATGAAGGCACAAGTGTTGTA 58.449 40.909 0.00 0.00 43.23 2.41
3381 3667 4.144297 ACATGAAGGCACAAGTGTTGTAT 58.856 39.130 0.00 0.00 43.23 2.29
3382 3668 4.022935 ACATGAAGGCACAAGTGTTGTATG 60.023 41.667 0.00 4.22 43.23 2.39
3383 3669 2.293122 TGAAGGCACAAGTGTTGTATGC 59.707 45.455 1.79 0.00 43.23 3.14
3384 3670 1.979855 AGGCACAAGTGTTGTATGCA 58.020 45.000 1.79 0.00 43.23 3.96
3385 3671 2.517959 AGGCACAAGTGTTGTATGCAT 58.482 42.857 3.79 3.79 43.23 3.96
3386 3672 2.229543 AGGCACAAGTGTTGTATGCATG 59.770 45.455 10.16 0.00 43.23 4.06
3387 3673 1.987770 GCACAAGTGTTGTATGCATGC 59.012 47.619 11.82 11.82 43.23 4.06
3388 3674 2.598589 CACAAGTGTTGTATGCATGCC 58.401 47.619 16.68 0.00 43.23 4.40
3389 3675 2.030096 CACAAGTGTTGTATGCATGCCA 60.030 45.455 16.68 2.66 43.23 4.92
3390 3676 2.627221 ACAAGTGTTGTATGCATGCCAA 59.373 40.909 16.68 9.56 43.27 4.52
3391 3677 3.247442 CAAGTGTTGTATGCATGCCAAG 58.753 45.455 16.68 0.00 0.00 3.61
3392 3678 1.203052 AGTGTTGTATGCATGCCAAGC 59.797 47.619 16.68 8.12 0.00 4.01
3393 3679 1.203052 GTGTTGTATGCATGCCAAGCT 59.797 47.619 16.68 0.00 0.00 3.74
3394 3680 2.423185 GTGTTGTATGCATGCCAAGCTA 59.577 45.455 16.68 0.00 0.00 3.32
3395 3681 3.087781 TGTTGTATGCATGCCAAGCTAA 58.912 40.909 16.68 0.11 0.00 3.09
3396 3682 3.700539 TGTTGTATGCATGCCAAGCTAAT 59.299 39.130 16.68 2.16 0.00 1.73
3397 3683 4.202040 TGTTGTATGCATGCCAAGCTAATC 60.202 41.667 16.68 0.30 0.00 1.75
3398 3684 3.553904 TGTATGCATGCCAAGCTAATCA 58.446 40.909 16.68 0.00 0.00 2.57
3399 3685 3.566742 TGTATGCATGCCAAGCTAATCAG 59.433 43.478 16.68 0.00 0.00 2.90
3400 3686 1.395635 TGCATGCCAAGCTAATCAGG 58.604 50.000 16.68 0.00 0.00 3.86
3404 3690 3.483954 GCCAAGCTAATCAGGCTCA 57.516 52.632 0.00 0.00 43.70 4.26
3405 3691 1.307097 GCCAAGCTAATCAGGCTCAG 58.693 55.000 0.00 0.00 43.70 3.35
3406 3692 1.407989 GCCAAGCTAATCAGGCTCAGT 60.408 52.381 0.00 0.00 43.70 3.41
3407 3693 2.158900 GCCAAGCTAATCAGGCTCAGTA 60.159 50.000 0.00 0.00 43.70 2.74
3408 3694 3.462021 CCAAGCTAATCAGGCTCAGTAC 58.538 50.000 0.00 0.00 39.30 2.73
3409 3695 3.133721 CCAAGCTAATCAGGCTCAGTACT 59.866 47.826 0.00 0.00 39.30 2.73
3410 3696 4.118410 CAAGCTAATCAGGCTCAGTACTG 58.882 47.826 17.17 17.17 39.30 2.74
3411 3697 3.370104 AGCTAATCAGGCTCAGTACTGT 58.630 45.455 21.99 0.00 34.70 3.55
3412 3698 4.537751 AGCTAATCAGGCTCAGTACTGTA 58.462 43.478 21.99 8.56 34.70 2.74
3413 3699 4.339814 AGCTAATCAGGCTCAGTACTGTAC 59.660 45.833 21.99 14.70 34.70 2.90
3414 3700 4.098044 GCTAATCAGGCTCAGTACTGTACA 59.902 45.833 21.99 2.64 36.17 2.90
3415 3701 5.394224 GCTAATCAGGCTCAGTACTGTACAA 60.394 44.000 21.99 2.26 36.17 2.41
3416 3702 3.936372 TCAGGCTCAGTACTGTACAAC 57.064 47.619 21.99 9.61 36.17 3.32
3417 3703 3.227614 TCAGGCTCAGTACTGTACAACA 58.772 45.455 21.99 1.12 36.17 3.33
3418 3704 3.639561 TCAGGCTCAGTACTGTACAACAA 59.360 43.478 21.99 0.38 36.17 2.83
3419 3705 3.741344 CAGGCTCAGTACTGTACAACAAC 59.259 47.826 21.99 7.18 0.00 3.32
3420 3706 3.386726 AGGCTCAGTACTGTACAACAACA 59.613 43.478 21.99 0.00 0.00 3.33
3421 3707 3.493503 GGCTCAGTACTGTACAACAACAC 59.506 47.826 21.99 3.00 0.00 3.32
3422 3708 4.116961 GCTCAGTACTGTACAACAACACA 58.883 43.478 21.99 0.00 0.00 3.72
3423 3709 4.750098 GCTCAGTACTGTACAACAACACAT 59.250 41.667 21.99 0.00 0.00 3.21
3424 3710 5.236478 GCTCAGTACTGTACAACAACACATT 59.764 40.000 21.99 0.00 0.00 2.71
3425 3711 6.422701 GCTCAGTACTGTACAACAACACATTA 59.577 38.462 21.99 0.00 0.00 1.90
3426 3712 7.359264 GCTCAGTACTGTACAACAACACATTAG 60.359 40.741 21.99 7.60 0.00 1.73
3427 3713 6.926826 TCAGTACTGTACAACAACACATTAGG 59.073 38.462 21.99 0.00 0.00 2.69
3428 3714 6.147164 CAGTACTGTACAACAACACATTAGGG 59.853 42.308 19.27 0.00 0.00 3.53
3429 3715 5.298989 ACTGTACAACAACACATTAGGGA 57.701 39.130 0.00 0.00 0.00 4.20
3430 3716 5.305585 ACTGTACAACAACACATTAGGGAG 58.694 41.667 0.00 0.00 0.00 4.30
3431 3717 5.163237 ACTGTACAACAACACATTAGGGAGT 60.163 40.000 0.00 0.00 0.00 3.85
3432 3718 5.302360 TGTACAACAACACATTAGGGAGTC 58.698 41.667 0.00 0.00 0.00 3.36
3433 3719 4.431416 ACAACAACACATTAGGGAGTCA 57.569 40.909 0.00 0.00 0.00 3.41
3434 3720 4.787551 ACAACAACACATTAGGGAGTCAA 58.212 39.130 0.00 0.00 0.00 3.18
3435 3721 5.197451 ACAACAACACATTAGGGAGTCAAA 58.803 37.500 0.00 0.00 0.00 2.69
3449 3735 5.541484 AGGGAGTCAAATGAAGCTTTTTCAT 59.459 36.000 0.00 0.00 40.57 2.57
3470 3756 3.508845 ATAAGCATCGTAGCCCCAAAT 57.491 42.857 0.00 0.00 34.23 2.32
3518 3804 7.661127 TTTTGCTAAACGACAGTACATATGT 57.339 32.000 13.93 13.93 0.00 2.29
3546 3832 5.053145 GTCTCAACGGATTTAGATGATGCT 58.947 41.667 0.00 0.00 0.00 3.79
3601 3887 2.525105 ACCCCAAAATGATAGCGGTT 57.475 45.000 0.00 0.00 0.00 4.44
3670 3956 2.297912 CGACGTTCGGACACACCAC 61.298 63.158 0.00 0.00 38.90 4.16
3690 3976 0.882927 TACGCTGTGGTGTTTCAGGC 60.883 55.000 0.00 0.00 37.38 4.85
3692 3978 1.891919 GCTGTGGTGTTTCAGGCGA 60.892 57.895 0.00 0.00 32.94 5.54
3821 4107 8.037758 ACGATGATTTTCTACTTCACTCTGAAT 58.962 33.333 0.00 0.00 35.59 2.57
3923 4209 5.189145 AGGTCAGAAAATAACGATACCCACT 59.811 40.000 0.00 0.00 0.00 4.00
3988 4274 7.961326 ATTATTTCCAATAAGTCAGTGGCTT 57.039 32.000 15.50 15.50 42.36 4.35
4027 4313 6.071616 GGAGAACTGAGTCTTAGTCATCTTGT 60.072 42.308 0.00 0.00 0.00 3.16
4063 4349 5.507817 GGTTCACAAGCATCAAGTGATTCAA 60.508 40.000 0.00 0.00 41.42 2.69
4255 4542 3.780294 AGACCACTCATTAAGGGTGCATA 59.220 43.478 0.00 0.00 31.10 3.14
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
125 134 1.031571 CGTGGCCATGGTTGTAGCAT 61.032 55.000 17.90 0.00 36.65 3.79
147 157 2.238847 TATCGCGGTTGCAGCTCCTT 62.239 55.000 6.13 0.00 42.97 3.36
256 266 5.049543 CGGTTGTAACTTTTCCCGTATTTCA 60.050 40.000 0.00 0.00 0.00 2.69
264 274 4.799949 GTCAAAACGGTTGTAACTTTTCCC 59.200 41.667 0.00 0.00 0.00 3.97
306 316 8.849168 TCAATCTCTGTTTGAAGCTTTTTCATA 58.151 29.630 0.00 0.00 30.44 2.15
634 647 1.073025 TCTTGAAGCACACCGGCAT 59.927 52.632 0.00 0.00 35.83 4.40
705 718 3.812019 CGCAGCCTCCGTACTCGT 61.812 66.667 0.00 0.00 35.01 4.18
772 785 4.162690 CCCTAGTCCCACGCTGCC 62.163 72.222 0.00 0.00 0.00 4.85
838 857 4.379243 CTTCACCGCGCCCTCACT 62.379 66.667 0.00 0.00 0.00 3.41
992 1022 0.956633 CCGCTCTGCCATGCAATAAT 59.043 50.000 0.00 0.00 38.41 1.28
993 1023 1.727511 GCCGCTCTGCCATGCAATAA 61.728 55.000 0.00 0.00 38.41 1.40
995 1025 3.524606 GCCGCTCTGCCATGCAAT 61.525 61.111 0.00 0.00 38.41 3.56
1004 1034 3.729965 ATTCTGCCTCGCCGCTCTG 62.730 63.158 0.00 0.00 0.00 3.35
1010 1040 1.140816 GAATACGATTCTGCCTCGCC 58.859 55.000 0.00 0.00 39.71 5.54
1011 1041 2.055100 GAGAATACGATTCTGCCTCGC 58.945 52.381 12.78 0.00 39.71 5.03
1037 1067 1.229114 GGTAGCGGGGGCCTATAGT 60.229 63.158 0.84 0.00 0.00 2.12
1041 1071 2.040254 AATGGTAGCGGGGGCCTA 60.040 61.111 0.84 0.00 0.00 3.93
1045 1075 2.040009 ATGTCGAATGGTAGCGGGGG 62.040 60.000 0.00 0.00 0.00 5.40
1051 1081 4.615949 CAGGAGAAGATGTCGAATGGTAG 58.384 47.826 0.00 0.00 0.00 3.18
1053 1083 2.419297 GCAGGAGAAGATGTCGAATGGT 60.419 50.000 0.00 0.00 0.00 3.55
1059 1089 0.539051 AAGGGCAGGAGAAGATGTCG 59.461 55.000 0.00 0.00 0.00 4.35
1075 1105 2.892852 TGATGGACAAAGGCAAGAAAGG 59.107 45.455 0.00 0.00 0.00 3.11
1086 1116 4.012374 GGAGCTCATCTTTGATGGACAAA 58.988 43.478 17.19 0.00 44.79 2.83
1088 1118 2.573009 TGGAGCTCATCTTTGATGGACA 59.427 45.455 17.19 0.00 0.00 4.02
1109 1139 2.125233 AGGACATGCCATCAGTGAGAT 58.875 47.619 0.00 0.00 40.02 2.75
1110 1140 1.576577 AGGACATGCCATCAGTGAGA 58.423 50.000 0.00 0.00 40.02 3.27
1116 1146 3.517500 TGTAGTTGTAGGACATGCCATCA 59.482 43.478 8.58 4.70 40.02 3.07
1122 1152 2.671396 GCCGTTGTAGTTGTAGGACATG 59.329 50.000 0.00 0.00 0.00 3.21
1123 1153 2.565834 AGCCGTTGTAGTTGTAGGACAT 59.434 45.455 0.00 0.00 0.00 3.06
1125 1155 2.334838 CAGCCGTTGTAGTTGTAGGAC 58.665 52.381 0.00 0.00 0.00 3.85
1128 1158 1.076332 GGCAGCCGTTGTAGTTGTAG 58.924 55.000 0.00 0.00 0.00 2.74
1146 1176 4.883354 GCAGCGGGAGGGATTGGG 62.883 72.222 0.00 0.00 0.00 4.12
1147 1177 4.113815 TGCAGCGGGAGGGATTGG 62.114 66.667 0.00 0.00 0.00 3.16
1149 1179 3.011517 AGTGCAGCGGGAGGGATT 61.012 61.111 0.00 0.00 0.00 3.01
1161 1191 1.423584 TCAGAAGGGTCTTCAGTGCA 58.576 50.000 9.87 0.00 28.78 4.57
1167 1197 2.171659 GGGGATCTTCAGAAGGGTCTTC 59.828 54.545 10.42 0.00 28.78 2.87
1179 1209 1.556911 TCAGTCAGCTTGGGGATCTTC 59.443 52.381 0.00 0.00 0.00 2.87
1184 1214 1.434188 TTCTTCAGTCAGCTTGGGGA 58.566 50.000 0.00 0.00 0.00 4.81
1192 1222 0.165511 GCGCTGCTTTCTTCAGTCAG 59.834 55.000 0.00 0.00 34.21 3.51
1195 1225 1.227943 TGGCGCTGCTTTCTTCAGT 60.228 52.632 7.64 0.00 34.21 3.41
1197 1227 1.227943 AGTGGCGCTGCTTTCTTCA 60.228 52.632 7.64 0.00 0.00 3.02
1198 1228 1.208614 CAGTGGCGCTGCTTTCTTC 59.791 57.895 16.01 0.00 38.52 2.87
1200 1230 1.002868 ATCAGTGGCGCTGCTTTCT 60.003 52.632 22.87 2.53 44.66 2.52
1203 1233 3.437795 GCATCAGTGGCGCTGCTT 61.438 61.111 22.87 10.11 44.66 3.91
1206 1236 2.435410 TCTGCATCAGTGGCGCTG 60.435 61.111 21.77 21.77 46.34 5.18
1207 1237 2.435586 GTCTGCATCAGTGGCGCT 60.436 61.111 7.64 0.00 32.61 5.92
1208 1238 3.857854 CGTCTGCATCAGTGGCGC 61.858 66.667 0.00 0.00 32.61 6.53
1209 1239 2.433145 ACGTCTGCATCAGTGGCG 60.433 61.111 0.00 0.00 32.61 5.69
1215 1245 2.504026 GCGTCGACGTCTGCATCA 60.504 61.111 35.48 0.00 42.22 3.07
1216 1246 2.202492 AGCGTCGACGTCTGCATC 60.202 61.111 35.48 18.98 42.22 3.91
1217 1247 2.504899 CAGCGTCGACGTCTGCAT 60.505 61.111 32.98 16.57 42.22 3.96
1218 1248 4.700365 CCAGCGTCGACGTCTGCA 62.700 66.667 35.64 1.50 39.95 4.41
1230 1261 2.513204 CCAGAGACATGGCCAGCG 60.513 66.667 13.05 7.61 32.48 5.18
1245 1276 0.321671 CCGAGACAAAGAGAAGGCCA 59.678 55.000 5.01 0.00 0.00 5.36
1251 1282 1.354705 TCCCTCTCCGAGACAAAGAGA 59.645 52.381 0.00 0.00 39.09 3.10
1252 1283 1.474879 GTCCCTCTCCGAGACAAAGAG 59.525 57.143 0.00 0.00 36.99 2.85
1263 1294 1.925972 AAGCCCTTGGTCCCTCTCC 60.926 63.158 0.00 0.00 0.00 3.71
1273 1304 2.012673 GCATAGTGTCTCAAGCCCTTG 58.987 52.381 1.62 1.62 41.71 3.61
1275 1306 0.176680 CGCATAGTGTCTCAAGCCCT 59.823 55.000 0.00 0.00 0.00 5.19
1278 1309 1.996292 TGACGCATAGTGTCTCAAGC 58.004 50.000 11.43 0.00 42.71 4.01
1281 1312 3.243737 ACAAGTTGACGCATAGTGTCTCA 60.244 43.478 10.54 0.00 42.71 3.27
1287 1318 2.543777 ACCACAAGTTGACGCATAGT 57.456 45.000 10.54 0.00 0.00 2.12
1288 1319 2.805671 TGAACCACAAGTTGACGCATAG 59.194 45.455 10.54 0.00 39.40 2.23
1290 1321 1.603802 CTGAACCACAAGTTGACGCAT 59.396 47.619 10.54 0.00 39.40 4.73
1292 1323 1.014352 ACTGAACCACAAGTTGACGC 58.986 50.000 10.54 0.00 39.40 5.19
1294 1325 2.017049 AGCACTGAACCACAAGTTGAC 58.983 47.619 10.54 0.00 39.40 3.18
1296 1327 2.016318 TCAGCACTGAACCACAAGTTG 58.984 47.619 0.00 0.00 39.40 3.16
1297 1328 2.418368 TCAGCACTGAACCACAAGTT 57.582 45.000 0.00 0.00 43.07 2.66
1298 1329 2.224606 CATCAGCACTGAACCACAAGT 58.775 47.619 4.14 0.00 43.58 3.16
1303 1334 4.402851 GCCATCAGCACTGAACCA 57.597 55.556 4.14 0.00 43.58 3.67
1312 1343 0.610232 ACCTTGACCTTGCCATCAGC 60.610 55.000 0.00 0.00 44.14 4.26
1313 1344 1.004044 AGACCTTGACCTTGCCATCAG 59.996 52.381 0.00 0.00 0.00 2.90
1317 1348 0.843309 TGAAGACCTTGACCTTGCCA 59.157 50.000 0.00 0.00 0.00 4.92
1318 1349 1.239347 GTGAAGACCTTGACCTTGCC 58.761 55.000 0.00 0.00 0.00 4.52
1319 1350 1.239347 GGTGAAGACCTTGACCTTGC 58.761 55.000 10.50 0.00 42.46 4.01
1320 1351 1.421646 AGGGTGAAGACCTTGACCTTG 59.578 52.381 15.95 0.00 44.65 3.61
1333 1364 1.698506 AAAATGTCGGCAAGGGTGAA 58.301 45.000 0.00 0.00 0.00 3.18
1334 1365 1.339610 CAAAAATGTCGGCAAGGGTGA 59.660 47.619 0.00 0.00 0.00 4.02
1335 1366 1.605202 CCAAAAATGTCGGCAAGGGTG 60.605 52.381 0.00 0.00 0.00 4.61
1336 1367 0.678950 CCAAAAATGTCGGCAAGGGT 59.321 50.000 0.00 0.00 0.00 4.34
1350 1393 0.179032 TGAAGTCCGCTGAGCCAAAA 60.179 50.000 0.00 0.00 0.00 2.44
1353 1396 2.659016 CTGAAGTCCGCTGAGCCA 59.341 61.111 0.00 0.00 0.00 4.75
1354 1397 2.817396 GCTGAAGTCCGCTGAGCC 60.817 66.667 0.00 0.00 0.00 4.70
1357 1400 4.742201 GCCGCTGAAGTCCGCTGA 62.742 66.667 0.00 0.00 0.00 4.26
1377 1420 4.767255 CCACTGTCCTCCAGGCGC 62.767 72.222 0.00 0.00 46.06 6.53
1410 1453 6.111768 ACGTTACGATAACCTACACTGTAG 57.888 41.667 13.03 9.02 0.00 2.74
1412 1455 4.436050 CGACGTTACGATAACCTACACTGT 60.436 45.833 13.03 0.00 35.09 3.55
1413 1456 4.024438 CGACGTTACGATAACCTACACTG 58.976 47.826 13.03 0.00 35.09 3.66
1416 1459 3.932710 AGTCGACGTTACGATAACCTACA 59.067 43.478 13.03 0.00 43.93 2.74
1419 1462 4.184629 AGTAGTCGACGTTACGATAACCT 58.815 43.478 13.03 3.08 43.93 3.50
1422 1465 5.344066 AGAGAGTAGTCGACGTTACGATAA 58.656 41.667 13.03 0.00 43.93 1.75
1424 1467 3.779759 AGAGAGTAGTCGACGTTACGAT 58.220 45.455 13.03 2.67 43.93 3.73
1427 1470 4.805192 AGATGAGAGAGTAGTCGACGTTAC 59.195 45.833 10.46 8.36 0.00 2.50
1428 1471 5.008619 AGATGAGAGAGTAGTCGACGTTA 57.991 43.478 10.46 0.00 0.00 3.18
1430 1473 3.530265 AGATGAGAGAGTAGTCGACGT 57.470 47.619 10.46 0.00 0.00 4.34
1432 1475 4.362279 ACGTAGATGAGAGAGTAGTCGAC 58.638 47.826 7.70 7.70 0.00 4.20
1437 1480 4.748102 GTGGAGACGTAGATGAGAGAGTAG 59.252 50.000 0.00 0.00 0.00 2.57
1438 1481 4.443175 GGTGGAGACGTAGATGAGAGAGTA 60.443 50.000 0.00 0.00 0.00 2.59
1442 1485 2.644676 TGGTGGAGACGTAGATGAGAG 58.355 52.381 0.00 0.00 0.00 3.20
1477 1520 2.203209 CCAGGGGCTACGGCATTC 60.203 66.667 0.00 0.00 40.87 2.67
1478 1521 2.690881 TCCAGGGGCTACGGCATT 60.691 61.111 0.00 0.00 40.87 3.56
1480 1523 4.715130 AGTCCAGGGGCTACGGCA 62.715 66.667 0.00 0.00 40.87 5.69
1485 1528 1.982395 CACGACAGTCCAGGGGCTA 60.982 63.158 0.00 0.00 0.00 3.93
1488 1531 1.183030 TGTACACGACAGTCCAGGGG 61.183 60.000 0.00 0.00 32.86 4.79
1497 1540 1.758280 AGGTTGGTTCTGTACACGACA 59.242 47.619 0.00 0.00 36.35 4.35
1509 1552 0.033601 TGCCTGTTGTGAGGTTGGTT 60.034 50.000 0.00 0.00 35.29 3.67
1512 1555 1.334869 GTCTTGCCTGTTGTGAGGTTG 59.665 52.381 0.00 0.00 35.29 3.77
1518 1561 0.798776 GATCCGTCTTGCCTGTTGTG 59.201 55.000 0.00 0.00 0.00 3.33
1520 1563 1.970917 GCGATCCGTCTTGCCTGTTG 61.971 60.000 0.00 0.00 0.00 3.33
1521 1564 1.741770 GCGATCCGTCTTGCCTGTT 60.742 57.895 0.00 0.00 0.00 3.16
1528 1571 1.668101 GGAGTGAGGCGATCCGTCTT 61.668 60.000 0.00 0.00 43.67 3.01
1533 1576 0.460987 CTTGTGGAGTGAGGCGATCC 60.461 60.000 0.00 0.00 0.00 3.36
1534 1577 0.460987 CCTTGTGGAGTGAGGCGATC 60.461 60.000 0.00 0.00 34.57 3.69
1536 1579 0.541063 TACCTTGTGGAGTGAGGCGA 60.541 55.000 0.00 0.00 37.04 5.54
1584 1627 9.778741 AGAGATTGAAGACAAGTTAAACATACA 57.221 29.630 0.00 0.00 39.46 2.29
1587 1630 8.571336 CCAAGAGATTGAAGACAAGTTAAACAT 58.429 33.333 0.00 0.00 39.46 2.71
1588 1631 7.468631 GCCAAGAGATTGAAGACAAGTTAAACA 60.469 37.037 0.00 0.00 39.46 2.83
1589 1632 6.858478 GCCAAGAGATTGAAGACAAGTTAAAC 59.142 38.462 0.00 0.00 39.46 2.01
1590 1633 6.545666 TGCCAAGAGATTGAAGACAAGTTAAA 59.454 34.615 0.00 0.00 39.46 1.52
1591 1634 6.061441 TGCCAAGAGATTGAAGACAAGTTAA 58.939 36.000 0.00 0.00 39.46 2.01
1592 1635 5.620206 TGCCAAGAGATTGAAGACAAGTTA 58.380 37.500 0.00 0.00 39.46 2.24
1593 1636 4.464008 TGCCAAGAGATTGAAGACAAGTT 58.536 39.130 0.00 0.00 39.46 2.66
1594 1637 4.090761 TGCCAAGAGATTGAAGACAAGT 57.909 40.909 0.00 0.00 39.46 3.16
1595 1638 5.392811 GGAATGCCAAGAGATTGAAGACAAG 60.393 44.000 0.00 0.00 39.46 3.16
1596 1639 4.460382 GGAATGCCAAGAGATTGAAGACAA 59.540 41.667 0.00 0.00 40.42 3.18
1597 1640 4.012374 GGAATGCCAAGAGATTGAAGACA 58.988 43.478 0.00 0.00 0.00 3.41
1598 1641 3.379688 GGGAATGCCAAGAGATTGAAGAC 59.620 47.826 0.00 0.00 35.15 3.01
1599 1642 3.010472 TGGGAATGCCAAGAGATTGAAGA 59.990 43.478 0.00 0.00 35.15 2.87
1600 1643 3.359033 TGGGAATGCCAAGAGATTGAAG 58.641 45.455 0.00 0.00 35.15 3.02
1601 1644 3.454719 TGGGAATGCCAAGAGATTGAA 57.545 42.857 0.00 0.00 35.15 2.69
1602 1645 3.675348 ATGGGAATGCCAAGAGATTGA 57.325 42.857 0.00 0.00 35.15 2.57
1603 1646 5.857471 TTAATGGGAATGCCAAGAGATTG 57.143 39.130 0.00 0.00 35.15 2.67
1604 1647 6.138263 TGATTAATGGGAATGCCAAGAGATT 58.862 36.000 0.00 0.00 35.15 2.40
1605 1648 5.708544 TGATTAATGGGAATGCCAAGAGAT 58.291 37.500 0.00 0.00 35.15 2.75
1606 1649 5.128033 TGATTAATGGGAATGCCAAGAGA 57.872 39.130 0.00 0.00 35.15 3.10
1607 1650 7.713734 ATATGATTAATGGGAATGCCAAGAG 57.286 36.000 0.00 0.00 35.15 2.85
1608 1651 8.393259 AGTATATGATTAATGGGAATGCCAAGA 58.607 33.333 0.00 0.00 35.15 3.02
1609 1652 8.585471 AGTATATGATTAATGGGAATGCCAAG 57.415 34.615 0.00 0.00 35.15 3.61
1610 1653 8.805175 CAAGTATATGATTAATGGGAATGCCAA 58.195 33.333 0.00 0.00 35.15 4.52
1611 1654 7.093814 GCAAGTATATGATTAATGGGAATGCCA 60.094 37.037 0.00 0.00 35.15 4.92
1612 1655 7.093814 TGCAAGTATATGATTAATGGGAATGCC 60.094 37.037 0.00 0.00 0.00 4.40
1613 1656 7.756722 GTGCAAGTATATGATTAATGGGAATGC 59.243 37.037 0.00 0.00 0.00 3.56
1614 1657 7.964559 CGTGCAAGTATATGATTAATGGGAATG 59.035 37.037 0.00 0.00 0.00 2.67
1615 1658 7.882791 TCGTGCAAGTATATGATTAATGGGAAT 59.117 33.333 0.00 0.00 0.00 3.01
1616 1659 7.220740 TCGTGCAAGTATATGATTAATGGGAA 58.779 34.615 0.00 0.00 0.00 3.97
1617 1660 6.764379 TCGTGCAAGTATATGATTAATGGGA 58.236 36.000 0.00 0.00 0.00 4.37
1618 1661 7.615582 ATCGTGCAAGTATATGATTAATGGG 57.384 36.000 0.00 0.00 0.00 4.00
1626 1669 9.921637 TCAAACATATATCGTGCAAGTATATGA 57.078 29.630 27.63 15.85 39.47 2.15
1627 1670 9.958285 GTCAAACATATATCGTGCAAGTATATG 57.042 33.333 23.69 23.69 41.35 1.78
1628 1671 9.705290 TGTCAAACATATATCGTGCAAGTATAT 57.295 29.630 0.00 4.64 0.00 0.86
1629 1672 9.705290 ATGTCAAACATATATCGTGCAAGTATA 57.295 29.630 0.00 2.58 36.99 1.47
1630 1673 8.498358 CATGTCAAACATATATCGTGCAAGTAT 58.502 33.333 0.00 0.43 36.53 2.12
1631 1674 7.494298 ACATGTCAAACATATATCGTGCAAGTA 59.506 33.333 0.00 0.00 36.53 2.24
1632 1675 6.316140 ACATGTCAAACATATATCGTGCAAGT 59.684 34.615 0.00 0.00 36.53 3.16
1633 1676 6.630045 CACATGTCAAACATATATCGTGCAAG 59.370 38.462 0.00 0.00 36.53 4.01
1634 1677 6.485393 CACATGTCAAACATATATCGTGCAA 58.515 36.000 0.00 0.00 36.53 4.08
1635 1678 5.503846 GCACATGTCAAACATATATCGTGCA 60.504 40.000 19.29 0.00 45.21 4.57
1636 1679 4.905866 GCACATGTCAAACATATATCGTGC 59.094 41.667 13.28 13.28 42.25 5.34
1637 1680 6.046885 TGCACATGTCAAACATATATCGTG 57.953 37.500 0.00 0.00 36.53 4.35
1638 1681 5.237127 CCTGCACATGTCAAACATATATCGT 59.763 40.000 0.00 0.00 36.53 3.73
1639 1682 5.334337 CCCTGCACATGTCAAACATATATCG 60.334 44.000 0.00 0.00 36.53 2.92
1640 1683 5.048504 CCCCTGCACATGTCAAACATATATC 60.049 44.000 0.00 0.00 36.53 1.63
1641 1684 4.828939 CCCCTGCACATGTCAAACATATAT 59.171 41.667 0.00 0.00 36.53 0.86
1649 1692 0.106268 AACACCCCTGCACATGTCAA 60.106 50.000 0.00 0.00 0.00 3.18
1696 1739 1.178276 CTACTGCGACAGTCTTCCCT 58.822 55.000 14.38 0.00 41.21 4.20
1705 1748 2.971307 TGAAATGATGCTACTGCGACA 58.029 42.857 0.00 0.00 43.34 4.35
1708 1751 2.032550 CCCTTGAAATGATGCTACTGCG 59.967 50.000 0.00 0.00 43.34 5.18
1714 1757 3.771216 ACAACTCCCTTGAAATGATGCT 58.229 40.909 0.00 0.00 33.59 3.79
1729 1772 1.808411 TCTCGCCATTCCAACAACTC 58.192 50.000 0.00 0.00 0.00 3.01
1731 1774 1.062587 CGATCTCGCCATTCCAACAAC 59.937 52.381 0.00 0.00 0.00 3.32
1732 1775 1.066502 TCGATCTCGCCATTCCAACAA 60.067 47.619 0.00 0.00 39.60 2.83
1733 1776 0.534873 TCGATCTCGCCATTCCAACA 59.465 50.000 0.00 0.00 39.60 3.33
1756 1805 6.205658 TCATCACGTAGATATCTGTCTTCAGG 59.794 42.308 15.79 2.57 37.46 3.86
1759 1808 6.575572 CGTTCATCACGTAGATATCTGTCTTC 59.424 42.308 15.79 0.54 44.49 2.87
1813 1868 3.620427 TTCTTAATGGGTAGCTTGCGA 57.380 42.857 0.00 0.00 0.00 5.10
1865 1920 2.159043 TGCCTCGATGGAAGAAGATGAC 60.159 50.000 5.24 0.00 38.35 3.06
1978 2039 2.049433 ACCGCGTCCAACTCTTCG 60.049 61.111 4.92 0.00 0.00 3.79
2008 2069 1.555075 GCCACCTTGGTCTCACTGATA 59.445 52.381 0.00 0.00 40.46 2.15
2055 2116 0.950555 TACACGGACGTCGCTGTACT 60.951 55.000 16.11 4.99 43.89 2.73
2058 2119 0.662374 CTTTACACGGACGTCGCTGT 60.662 55.000 17.76 17.76 43.89 4.40
2074 2135 4.323477 TGCCGGTACTGCGCCTTT 62.323 61.111 4.18 0.00 43.04 3.11
2105 2172 3.453988 CCACGGGGCATTTGTGTT 58.546 55.556 0.00 0.00 31.75 3.32
2120 2190 1.200760 ATCTGTACAGGTGGCAGCCA 61.201 55.000 22.48 11.22 0.00 4.75
2131 2201 3.506398 TGTCTTCTGGGTGATCTGTACA 58.494 45.455 0.00 0.00 0.00 2.90
2152 2222 0.846693 AGTGGTCACTTTCTGGCCTT 59.153 50.000 3.32 0.00 46.15 4.35
2164 2234 2.649531 CAAAGGGGTTGTAGTGGTCA 57.350 50.000 0.00 0.00 32.08 4.02
2194 2264 1.915614 GATATCCAATGCGCTGCCCG 61.916 60.000 9.73 0.00 40.75 6.13
2198 2268 0.514255 CGGTGATATCCAATGCGCTG 59.486 55.000 9.73 0.00 0.00 5.18
2199 2269 1.230635 GCGGTGATATCCAATGCGCT 61.231 55.000 9.73 0.00 0.00 5.92
2249 2331 1.733399 GCACGTTCTGAGGGACGAC 60.733 63.158 14.28 4.53 0.00 4.34
2250 2332 2.197605 TGCACGTTCTGAGGGACGA 61.198 57.895 14.28 0.00 0.00 4.20
2258 2340 0.813610 TCCACCTTGTGCACGTTCTG 60.814 55.000 13.13 4.95 31.34 3.02
2259 2341 0.532862 CTCCACCTTGTGCACGTTCT 60.533 55.000 13.13 0.00 31.34 3.01
2264 2346 2.607892 GCGACTCCACCTTGTGCAC 61.608 63.158 10.75 10.75 31.34 4.57
2273 2355 2.432628 CTTCACCGGCGACTCCAC 60.433 66.667 9.30 0.00 34.01 4.02
2281 2363 2.434359 CCGACTTCCTTCACCGGC 60.434 66.667 0.00 0.00 33.47 6.13
2293 2375 0.901580 ACACCCGATACAACCCGACT 60.902 55.000 0.00 0.00 0.00 4.18
2299 2381 0.036765 TGCCAGACACCCGATACAAC 60.037 55.000 0.00 0.00 0.00 3.32
2318 2400 2.356125 CCTTGGAGATGGTCGGAAACAT 60.356 50.000 0.00 0.00 0.00 2.71
2341 2423 0.319083 CAAATGCAAGCTTGGAGCCA 59.681 50.000 27.10 16.62 43.77 4.75
2356 2438 5.215160 GCTTTGAACTCATTGTCGACAAAT 58.785 37.500 32.69 18.82 39.55 2.32
2359 2441 2.220824 CGCTTTGAACTCATTGTCGACA 59.779 45.455 15.76 15.76 0.00 4.35
2410 2492 2.030540 CCCTCTTTTCTCGTACACGACA 60.031 50.000 0.00 0.00 44.22 4.35
2411 2493 2.593257 CCCTCTTTTCTCGTACACGAC 58.407 52.381 0.00 0.00 44.22 4.34
2448 2530 0.673985 GTTCTGGTTCCAAACAGGGC 59.326 55.000 4.52 0.00 38.24 5.19
2455 2537 1.217916 TGTCTGGGTTCTGGTTCCAA 58.782 50.000 0.00 0.00 0.00 3.53
2489 2571 0.706433 AATGAGGGGCCAACACAGAT 59.294 50.000 4.39 0.00 0.00 2.90
2494 2588 0.893270 CGTTGAATGAGGGGCCAACA 60.893 55.000 4.39 4.93 38.91 3.33
2495 2589 1.883021 CGTTGAATGAGGGGCCAAC 59.117 57.895 4.39 0.00 36.48 3.77
2506 2600 1.074775 TGGCTTCTGGGCGTTGAAT 59.925 52.632 0.00 0.00 44.11 2.57
2518 2612 3.726291 GAGTAGATCTCCAGTGGCTTC 57.274 52.381 3.51 0.87 37.22 3.86
2554 2648 0.451628 CATTCTGTCGTGCGTTGCTG 60.452 55.000 0.00 0.00 0.00 4.41
2555 2649 0.880278 ACATTCTGTCGTGCGTTGCT 60.880 50.000 0.00 0.00 0.00 3.91
2557 2651 3.639222 GACATTCTGTCGTGCGTTG 57.361 52.632 0.00 0.00 37.67 4.10
2565 2659 6.106185 GGGTGAGCCTTTTGACATTCTGTC 62.106 50.000 0.00 0.31 40.24 3.51
2566 2660 2.887152 GGTGAGCCTTTTGACATTCTGT 59.113 45.455 0.00 0.00 0.00 3.41
2570 2664 2.380064 TGGGTGAGCCTTTTGACATT 57.620 45.000 1.06 0.00 34.45 2.71
2572 2666 1.619654 CATGGGTGAGCCTTTTGACA 58.380 50.000 1.06 0.00 34.45 3.58
2576 2673 1.978617 CGCCATGGGTGAGCCTTTT 60.979 57.895 15.13 0.00 34.74 2.27
2588 2685 1.081509 CGTTGTTGAACCCGCCATG 60.082 57.895 0.00 0.00 0.00 3.66
2608 2705 2.125106 GGGCTGCTCGACGGAAAT 60.125 61.111 0.00 0.00 0.00 2.17
2644 2741 2.413142 ATCCCTCGTCGACCGGAAC 61.413 63.158 9.46 1.88 37.11 3.62
2665 2762 1.722034 TCTTGTGCCTCTTCTCACCT 58.278 50.000 0.00 0.00 32.51 4.00
2676 2773 4.438744 GCATTATGTACAGGTTCTTGTGCC 60.439 45.833 0.33 0.00 33.40 5.01
2689 2945 3.173668 TCCGTGTCCAGCATTATGTAC 57.826 47.619 0.00 0.00 0.00 2.90
2705 2961 2.036733 CACCGTATTCACCCATATCCGT 59.963 50.000 0.00 0.00 0.00 4.69
2707 2963 4.315803 CTTCACCGTATTCACCCATATCC 58.684 47.826 0.00 0.00 0.00 2.59
2710 2966 2.158871 GCCTTCACCGTATTCACCCATA 60.159 50.000 0.00 0.00 0.00 2.74
2713 2969 0.252197 AGCCTTCACCGTATTCACCC 59.748 55.000 0.00 0.00 0.00 4.61
2716 2972 0.251916 CCCAGCCTTCACCGTATTCA 59.748 55.000 0.00 0.00 0.00 2.57
2717 2973 0.539986 TCCCAGCCTTCACCGTATTC 59.460 55.000 0.00 0.00 0.00 1.75
2721 2986 2.203788 TCTCCCAGCCTTCACCGT 60.204 61.111 0.00 0.00 0.00 4.83
2725 2990 1.984570 CCTCGTCTCCCAGCCTTCA 60.985 63.158 0.00 0.00 0.00 3.02
2731 2996 2.888863 GTCAGCCTCGTCTCCCAG 59.111 66.667 0.00 0.00 0.00 4.45
2741 3006 0.036010 CATGACCCTTTCGTCAGCCT 60.036 55.000 0.00 0.00 45.55 4.58
2755 3020 2.086869 CAATGGGTGTCTGTCCATGAC 58.913 52.381 0.00 0.00 42.43 3.06
2756 3021 1.614051 GCAATGGGTGTCTGTCCATGA 60.614 52.381 0.00 0.00 42.43 3.07
2791 3056 0.811915 AGAAGACGATCCAGTCACCG 59.188 55.000 3.94 0.00 43.24 4.94
2794 3059 3.356290 TGATGAGAAGACGATCCAGTCA 58.644 45.455 3.94 0.00 43.24 3.41
2831 3096 4.809496 ATTGCCAGAGCCCAGCGG 62.809 66.667 0.00 0.00 38.69 5.52
2832 3097 3.207669 GATTGCCAGAGCCCAGCG 61.208 66.667 0.00 0.00 38.69 5.18
2833 3098 2.119655 CAGATTGCCAGAGCCCAGC 61.120 63.158 0.00 0.00 38.69 4.85
2835 3100 0.627451 ATTCAGATTGCCAGAGCCCA 59.373 50.000 0.00 0.00 38.69 5.36
2838 3103 2.289002 CCGTTATTCAGATTGCCAGAGC 59.711 50.000 0.00 0.00 40.48 4.09
2840 3105 2.288666 GCCGTTATTCAGATTGCCAGA 58.711 47.619 0.00 0.00 0.00 3.86
2842 3107 1.742831 GTGCCGTTATTCAGATTGCCA 59.257 47.619 0.00 0.00 0.00 4.92
2844 3109 2.223340 CCTGTGCCGTTATTCAGATTGC 60.223 50.000 0.00 0.00 0.00 3.56
2846 3111 2.026262 ACCCTGTGCCGTTATTCAGATT 60.026 45.455 0.00 0.00 0.00 2.40
2848 3113 0.981183 ACCCTGTGCCGTTATTCAGA 59.019 50.000 0.00 0.00 0.00 3.27
2852 3117 3.102204 AGTAGTACCCTGTGCCGTTATT 58.898 45.455 0.00 0.00 0.00 1.40
2854 3119 2.094675 GAGTAGTACCCTGTGCCGTTA 58.905 52.381 0.00 0.00 0.00 3.18
2876 3147 1.072331 AGTTGCCTTCACCAGGTACAG 59.928 52.381 0.00 0.00 46.07 2.74
2902 3173 0.033796 CCACCCTGATCAGCACCATT 60.034 55.000 17.76 0.00 0.00 3.16
2909 3180 2.202987 GCTCGCCACCCTGATCAG 60.203 66.667 16.24 16.24 0.00 2.90
2922 3193 4.776322 TGTCGCCCCCATTGCTCG 62.776 66.667 0.00 0.00 0.00 5.03
2924 3195 2.124151 GATGTCGCCCCCATTGCT 60.124 61.111 0.00 0.00 0.00 3.91
2928 3199 3.861797 GACCGATGTCGCCCCCAT 61.862 66.667 0.00 0.00 38.18 4.00
2939 3210 0.180406 GGGTGGCTTATGTGACCGAT 59.820 55.000 0.00 0.00 0.00 4.18
2952 3226 2.574018 GGGCTGAAAACTGGGTGGC 61.574 63.158 0.00 0.00 0.00 5.01
3010 3284 1.218316 GATCGGGTCCACAGACACC 59.782 63.158 0.00 0.00 44.14 4.16
3016 3290 2.362503 AGCGAGATCGGGTCCACA 60.363 61.111 4.18 0.00 40.23 4.17
3052 3326 2.687200 TCACCATAGGGCCGCACT 60.687 61.111 0.00 0.00 37.90 4.40
3077 3354 0.250553 GGGTTGTCGATGTCCACCAA 60.251 55.000 0.00 0.00 0.00 3.67
3109 3386 5.655532 CCCCTTGATCATGTCTTCATTCTTT 59.344 40.000 0.00 0.00 31.15 2.52
3115 3392 3.308402 GGAACCCCTTGATCATGTCTTCA 60.308 47.826 0.00 0.00 0.00 3.02
3118 3395 2.025887 GTGGAACCCCTTGATCATGTCT 60.026 50.000 0.00 0.00 0.00 3.41
3143 3420 2.372690 CGTACCTGCTGTGCGTGAC 61.373 63.158 8.72 0.00 46.36 3.67
3198 3475 2.325082 ACATTTGGCTCCGTCGCAC 61.325 57.895 0.00 0.00 0.00 5.34
3214 3500 0.385029 GCAACATGTTCCACTGCACA 59.615 50.000 8.48 0.00 33.19 4.57
3230 3516 2.224843 ACAACTGATCCATGTCCAGCAA 60.225 45.455 6.25 0.00 0.00 3.91
3232 3518 2.119801 ACAACTGATCCATGTCCAGC 57.880 50.000 6.25 0.00 0.00 4.85
3234 3520 4.632327 TTGTACAACTGATCCATGTCCA 57.368 40.909 3.59 0.00 0.00 4.02
3236 3522 4.142902 CGGTTTGTACAACTGATCCATGTC 60.143 45.833 8.07 0.00 0.00 3.06
3240 3526 2.105134 ACCGGTTTGTACAACTGATCCA 59.895 45.455 8.07 0.00 0.00 3.41
3241 3527 2.482721 CACCGGTTTGTACAACTGATCC 59.517 50.000 2.97 5.51 0.00 3.36
3242 3528 3.059188 CACACCGGTTTGTACAACTGATC 60.059 47.826 12.75 0.00 0.00 2.92
3243 3529 2.875933 CACACCGGTTTGTACAACTGAT 59.124 45.455 12.75 0.00 0.00 2.90
3244 3530 2.281517 CACACCGGTTTGTACAACTGA 58.718 47.619 12.75 0.00 0.00 3.41
3245 3531 2.011222 ACACACCGGTTTGTACAACTG 58.989 47.619 24.51 8.65 0.00 3.16
3246 3532 2.282407 GACACACCGGTTTGTACAACT 58.718 47.619 25.64 2.46 0.00 3.16
3247 3533 1.331447 GGACACACCGGTTTGTACAAC 59.669 52.381 27.67 15.01 0.00 3.32
3248 3534 1.666054 GGACACACCGGTTTGTACAA 58.334 50.000 27.67 3.59 0.00 2.41
3249 3535 3.383092 GGACACACCGGTTTGTACA 57.617 52.632 27.67 0.00 0.00 2.90
3261 3547 2.563798 GGGTGGACGTACGGACACA 61.564 63.158 31.43 18.41 35.62 3.72
3262 3548 2.259511 GGGTGGACGTACGGACAC 59.740 66.667 26.44 26.44 0.00 3.67
3307 3593 4.864334 GGGATGCAGAGGTGGCCG 62.864 72.222 0.00 0.00 0.00 6.13
3318 3604 1.153005 CAGGCTCTCTTGGGGATGC 60.153 63.158 0.00 0.00 0.00 3.91
3331 3617 0.815734 GCAATTGTCATCAGCAGGCT 59.184 50.000 7.40 0.00 0.00 4.58
3332 3618 0.815734 AGCAATTGTCATCAGCAGGC 59.184 50.000 7.40 0.00 0.00 4.85
3333 3619 3.011818 TGTAGCAATTGTCATCAGCAGG 58.988 45.455 7.40 0.00 0.00 4.85
3334 3620 4.334481 TCATGTAGCAATTGTCATCAGCAG 59.666 41.667 7.40 0.00 0.00 4.24
3342 3628 6.529125 CCTTCATGTTTCATGTAGCAATTGTC 59.471 38.462 7.40 0.00 0.00 3.18
3343 3629 6.392354 CCTTCATGTTTCATGTAGCAATTGT 58.608 36.000 7.40 0.00 0.00 2.71
3344 3630 5.290158 GCCTTCATGTTTCATGTAGCAATTG 59.710 40.000 0.00 0.00 0.00 2.32
3345 3631 5.047164 TGCCTTCATGTTTCATGTAGCAATT 60.047 36.000 15.39 0.00 0.00 2.32
3346 3632 4.463539 TGCCTTCATGTTTCATGTAGCAAT 59.536 37.500 15.39 0.00 0.00 3.56
3347 3633 3.825585 TGCCTTCATGTTTCATGTAGCAA 59.174 39.130 15.39 4.56 0.00 3.91
3348 3634 3.191162 GTGCCTTCATGTTTCATGTAGCA 59.809 43.478 14.48 14.48 0.00 3.49
3349 3635 3.191162 TGTGCCTTCATGTTTCATGTAGC 59.809 43.478 9.13 10.38 0.00 3.58
3350 3636 5.048504 ACTTGTGCCTTCATGTTTCATGTAG 60.049 40.000 9.13 8.86 0.00 2.74
3351 3637 4.826733 ACTTGTGCCTTCATGTTTCATGTA 59.173 37.500 9.13 0.30 0.00 2.29
3352 3638 3.638160 ACTTGTGCCTTCATGTTTCATGT 59.362 39.130 9.13 0.00 0.00 3.21
3353 3639 3.985279 CACTTGTGCCTTCATGTTTCATG 59.015 43.478 3.65 3.65 0.00 3.07
3354 3640 3.638160 ACACTTGTGCCTTCATGTTTCAT 59.362 39.130 0.10 0.00 0.00 2.57
3355 3641 3.023119 ACACTTGTGCCTTCATGTTTCA 58.977 40.909 0.10 0.00 0.00 2.69
3356 3642 3.715628 ACACTTGTGCCTTCATGTTTC 57.284 42.857 0.10 0.00 0.00 2.78
3357 3643 3.195396 ACAACACTTGTGCCTTCATGTTT 59.805 39.130 0.10 0.00 43.48 2.83
3358 3644 2.760092 ACAACACTTGTGCCTTCATGTT 59.240 40.909 0.10 0.00 43.48 2.71
3359 3645 2.378038 ACAACACTTGTGCCTTCATGT 58.622 42.857 0.10 0.00 43.48 3.21
3360 3646 4.478699 CATACAACACTTGTGCCTTCATG 58.521 43.478 0.10 0.00 45.03 3.07
3361 3647 3.057315 GCATACAACACTTGTGCCTTCAT 60.057 43.478 0.10 0.00 45.03 2.57
3362 3648 2.293122 GCATACAACACTTGTGCCTTCA 59.707 45.455 0.10 0.00 45.03 3.02
3363 3649 2.293122 TGCATACAACACTTGTGCCTTC 59.707 45.455 0.10 0.00 45.03 3.46
3364 3650 2.305928 TGCATACAACACTTGTGCCTT 58.694 42.857 0.10 0.00 45.03 4.35
3365 3651 1.979855 TGCATACAACACTTGTGCCT 58.020 45.000 0.10 0.00 45.03 4.75
3366 3652 2.598589 CATGCATACAACACTTGTGCC 58.401 47.619 0.00 0.00 45.03 5.01
3367 3653 1.987770 GCATGCATACAACACTTGTGC 59.012 47.619 14.21 0.00 45.03 4.57
3368 3654 2.030096 TGGCATGCATACAACACTTGTG 60.030 45.455 21.36 0.00 45.03 3.33
3370 3656 3.247442 CTTGGCATGCATACAACACTTG 58.753 45.455 21.36 0.00 0.00 3.16
3371 3657 2.353011 GCTTGGCATGCATACAACACTT 60.353 45.455 21.36 0.00 0.00 3.16
3372 3658 1.203052 GCTTGGCATGCATACAACACT 59.797 47.619 21.36 0.00 0.00 3.55
3373 3659 1.203052 AGCTTGGCATGCATACAACAC 59.797 47.619 24.85 7.53 0.00 3.32
3374 3660 1.548081 AGCTTGGCATGCATACAACA 58.452 45.000 24.85 3.75 0.00 3.33
3375 3661 3.781079 TTAGCTTGGCATGCATACAAC 57.219 42.857 24.85 9.23 0.00 3.32
3376 3662 3.952967 TGATTAGCTTGGCATGCATACAA 59.047 39.130 24.85 13.45 0.00 2.41
3377 3663 3.553904 TGATTAGCTTGGCATGCATACA 58.446 40.909 24.85 16.02 0.00 2.29
3378 3664 3.057736 CCTGATTAGCTTGGCATGCATAC 60.058 47.826 24.85 14.03 0.00 2.39
3379 3665 3.151554 CCTGATTAGCTTGGCATGCATA 58.848 45.455 24.85 13.58 0.00 3.14
3380 3666 1.961394 CCTGATTAGCTTGGCATGCAT 59.039 47.619 24.85 12.19 0.00 3.96
3381 3667 1.395635 CCTGATTAGCTTGGCATGCA 58.604 50.000 24.85 7.89 0.00 3.96
3382 3668 0.031721 GCCTGATTAGCTTGGCATGC 59.968 55.000 16.84 16.84 44.34 4.06
3386 3672 1.307097 CTGAGCCTGATTAGCTTGGC 58.693 55.000 0.00 0.00 41.75 4.52
3387 3673 2.706339 ACTGAGCCTGATTAGCTTGG 57.294 50.000 0.00 0.00 41.75 3.61
3388 3674 4.118410 CAGTACTGAGCCTGATTAGCTTG 58.882 47.826 18.45 0.00 41.75 4.01
3389 3675 3.772025 ACAGTACTGAGCCTGATTAGCTT 59.228 43.478 29.30 0.00 41.75 3.74
3390 3676 3.370104 ACAGTACTGAGCCTGATTAGCT 58.630 45.455 29.30 0.00 45.23 3.32
3391 3677 3.810310 ACAGTACTGAGCCTGATTAGC 57.190 47.619 29.30 0.00 32.93 3.09
3392 3678 5.836821 TGTACAGTACTGAGCCTGATTAG 57.163 43.478 29.30 0.00 32.93 1.73
3393 3679 5.479027 TGTTGTACAGTACTGAGCCTGATTA 59.521 40.000 29.30 5.70 32.93 1.75
3394 3680 4.283467 TGTTGTACAGTACTGAGCCTGATT 59.717 41.667 29.30 6.73 32.93 2.57
3395 3681 3.832490 TGTTGTACAGTACTGAGCCTGAT 59.168 43.478 29.30 7.49 32.93 2.90
3396 3682 3.227614 TGTTGTACAGTACTGAGCCTGA 58.772 45.455 29.30 6.11 32.93 3.86
3397 3683 3.660501 TGTTGTACAGTACTGAGCCTG 57.339 47.619 29.30 2.69 34.82 4.85
3398 3684 3.386726 TGTTGTTGTACAGTACTGAGCCT 59.613 43.478 29.30 9.39 0.00 4.58
3399 3685 3.493503 GTGTTGTTGTACAGTACTGAGCC 59.506 47.826 29.30 15.43 0.00 4.70
3400 3686 4.116961 TGTGTTGTTGTACAGTACTGAGC 58.883 43.478 29.30 19.48 0.00 4.26
3401 3687 6.844696 AATGTGTTGTTGTACAGTACTGAG 57.155 37.500 29.30 4.08 0.00 3.35
3402 3688 6.926826 CCTAATGTGTTGTTGTACAGTACTGA 59.073 38.462 29.30 10.19 0.00 3.41
3403 3689 6.147164 CCCTAATGTGTTGTTGTACAGTACTG 59.853 42.308 21.44 21.44 0.00 2.74
3404 3690 6.042322 TCCCTAATGTGTTGTTGTACAGTACT 59.958 38.462 12.07 0.00 0.00 2.73
3405 3691 6.225318 TCCCTAATGTGTTGTTGTACAGTAC 58.775 40.000 3.49 3.49 0.00 2.73
3406 3692 6.042322 ACTCCCTAATGTGTTGTTGTACAGTA 59.958 38.462 0.00 0.00 0.00 2.74
3407 3693 5.163237 ACTCCCTAATGTGTTGTTGTACAGT 60.163 40.000 0.00 0.00 0.00 3.55
3408 3694 5.305585 ACTCCCTAATGTGTTGTTGTACAG 58.694 41.667 0.00 0.00 0.00 2.74
3409 3695 5.163290 TGACTCCCTAATGTGTTGTTGTACA 60.163 40.000 0.00 0.00 0.00 2.90
3410 3696 5.302360 TGACTCCCTAATGTGTTGTTGTAC 58.698 41.667 0.00 0.00 0.00 2.90
3411 3697 5.554437 TGACTCCCTAATGTGTTGTTGTA 57.446 39.130 0.00 0.00 0.00 2.41
3412 3698 4.431416 TGACTCCCTAATGTGTTGTTGT 57.569 40.909 0.00 0.00 0.00 3.32
3413 3699 5.766150 TTTGACTCCCTAATGTGTTGTTG 57.234 39.130 0.00 0.00 0.00 3.33
3414 3700 6.068010 TCATTTGACTCCCTAATGTGTTGTT 58.932 36.000 0.00 0.00 38.53 2.83
3415 3701 5.630121 TCATTTGACTCCCTAATGTGTTGT 58.370 37.500 0.00 0.00 38.53 3.32
3416 3702 6.573664 TTCATTTGACTCCCTAATGTGTTG 57.426 37.500 0.00 0.00 38.53 3.33
3417 3703 5.183904 GCTTCATTTGACTCCCTAATGTGTT 59.816 40.000 0.00 0.00 38.53 3.32
3418 3704 4.702131 GCTTCATTTGACTCCCTAATGTGT 59.298 41.667 0.00 0.00 38.53 3.72
3419 3705 4.946157 AGCTTCATTTGACTCCCTAATGTG 59.054 41.667 0.00 0.00 38.53 3.21
3420 3706 5.184892 AGCTTCATTTGACTCCCTAATGT 57.815 39.130 0.00 0.00 38.53 2.71
3421 3707 6.521151 AAAGCTTCATTTGACTCCCTAATG 57.479 37.500 0.00 0.00 38.68 1.90
3422 3708 7.233348 TGAAAAAGCTTCATTTGACTCCCTAAT 59.767 33.333 0.00 0.00 0.00 1.73
3423 3709 6.549364 TGAAAAAGCTTCATTTGACTCCCTAA 59.451 34.615 0.00 0.00 0.00 2.69
3424 3710 6.068010 TGAAAAAGCTTCATTTGACTCCCTA 58.932 36.000 0.00 0.00 0.00 3.53
3425 3711 4.895297 TGAAAAAGCTTCATTTGACTCCCT 59.105 37.500 0.00 0.00 0.00 4.20
3426 3712 5.200368 TGAAAAAGCTTCATTTGACTCCC 57.800 39.130 0.00 0.00 0.00 4.30
3429 3715 9.578439 GCTTATATGAAAAAGCTTCATTTGACT 57.422 29.630 0.00 0.00 43.77 3.41
3430 3716 9.357652 TGCTTATATGAAAAAGCTTCATTTGAC 57.642 29.630 0.00 0.00 46.57 3.18
3433 3719 9.241317 CGATGCTTATATGAAAAAGCTTCATTT 57.759 29.630 17.34 0.00 45.81 2.32
3434 3720 8.408601 ACGATGCTTATATGAAAAAGCTTCATT 58.591 29.630 17.34 0.00 45.81 2.57
3435 3721 7.934457 ACGATGCTTATATGAAAAAGCTTCAT 58.066 30.769 17.34 1.46 45.81 2.57
3449 3735 4.634012 ATTTGGGGCTACGATGCTTATA 57.366 40.909 0.00 0.00 0.00 0.98
3495 3781 7.171848 ACAACATATGTACTGTCGTTTAGCAAA 59.828 33.333 9.21 0.00 41.63 3.68
3505 3791 5.637809 TGAGACGACAACATATGTACTGTC 58.362 41.667 22.63 22.63 44.12 3.51
3542 3828 6.444633 GCTGCATTCACATTAAATAGAGCAT 58.555 36.000 0.00 0.00 0.00 3.79
3546 3832 6.774170 AGATGGCTGCATTCACATTAAATAGA 59.226 34.615 0.50 0.00 0.00 1.98
3670 3956 1.148310 CCTGAAACACCACAGCGTAG 58.852 55.000 0.00 0.00 33.40 3.51
3685 3971 2.355837 GCAACTCACGTCGCCTGA 60.356 61.111 0.00 0.00 0.00 3.86
3690 3976 1.401530 TAGTTTCGCAACTCACGTCG 58.598 50.000 3.03 0.00 42.66 5.12
3692 3978 2.735134 GGAATAGTTTCGCAACTCACGT 59.265 45.455 3.03 0.00 42.66 4.49
3729 4015 7.829378 ATATTTGAGTTACGAGTTTGGTCTC 57.171 36.000 0.00 0.00 0.00 3.36
3788 4074 8.169268 GTGAAGTAGAAAATCATCGTAACAAGG 58.831 37.037 0.00 0.00 0.00 3.61
3890 4176 7.608153 TCGTTATTTTCTGACCTTCACAGATA 58.392 34.615 0.00 0.00 42.68 1.98
3923 4209 1.132453 CGATGAGTGTTGAGGCTCGTA 59.868 52.381 10.42 0.00 34.67 3.43
3960 4246 8.129211 GCCACTGACTTATTGGAAATAATACAC 58.871 37.037 0.00 0.00 30.93 2.90
4009 4295 7.147828 CCTTATGGACAAGATGACTAAGACTCA 60.148 40.741 0.00 0.00 34.57 3.41
4063 4349 4.347583 TGGGCTTTTGGAATCACTTGATTT 59.652 37.500 5.94 0.00 44.14 2.17
4151 4438 4.142708 TGCAAAGTTAGTAATGATGGTGCG 60.143 41.667 0.00 0.00 0.00 5.34
4212 4499 9.830975 TGGTCTATTTTTATTGAATCTCGATCA 57.169 29.630 0.00 0.00 0.00 2.92
4244 4531 9.875708 AATATCTTTTATGGTTATGCACCCTTA 57.124 29.630 0.00 0.00 46.68 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.