Multiple sequence alignment - TraesCS6B01G055800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G055800 chr6B 100.000 4594 0 0 1 4594 36038051 36042644 0.000000e+00 8484.0
1 TraesCS6B01G055800 chr6B 81.427 883 136 16 992 1863 36137593 36138458 0.000000e+00 697.0
2 TraesCS6B01G055800 chr6B 84.897 682 71 19 2696 3367 36141688 36142347 0.000000e+00 660.0
3 TraesCS6B01G055800 chr6B 82.998 647 72 19 1912 2550 36138477 36139093 6.720000e-153 551.0
4 TraesCS6B01G055800 chr6B 77.883 737 122 27 1146 1863 36131651 36132365 1.980000e-113 420.0
5 TraesCS6B01G055800 chr6B 78.029 619 81 31 3251 3846 35941141 35941727 5.690000e-89 339.0
6 TraesCS6B01G055800 chr6B 79.592 392 60 11 3401 3782 36142343 36142724 3.520000e-66 263.0
7 TraesCS6B01G055800 chr6B 89.529 191 20 0 1907 2097 36132379 36132569 4.590000e-60 243.0
8 TraesCS6B01G055800 chr6B 86.275 153 21 0 1913 2065 29263721 29263569 2.840000e-37 167.0
9 TraesCS6B01G055800 chr6B 84.516 155 21 2 1911 2065 33382474 33382323 2.860000e-32 150.0
10 TraesCS6B01G055800 chr6B 80.000 195 35 4 1914 2105 33589926 33589733 1.720000e-29 141.0
11 TraesCS6B01G055800 chr6A 95.201 1146 38 6 2448 3580 21316891 21318032 0.000000e+00 1796.0
12 TraesCS6B01G055800 chr6A 95.201 1146 38 6 2448 3580 21322286 21323427 0.000000e+00 1796.0
13 TraesCS6B01G055800 chr6A 95.201 1146 38 6 2448 3580 21328532 21329673 0.000000e+00 1796.0
14 TraesCS6B01G055800 chr6A 90.163 1352 120 5 1013 2355 21320941 21322288 0.000000e+00 1748.0
15 TraesCS6B01G055800 chr6A 92.843 1006 63 3 1356 2355 21315891 21316893 0.000000e+00 1450.0
16 TraesCS6B01G055800 chr6A 92.843 1006 63 3 1356 2355 21327532 21328534 0.000000e+00 1450.0
17 TraesCS6B01G055800 chr6A 82.014 1162 120 46 401 1533 21305727 21306828 0.000000e+00 905.0
18 TraesCS6B01G055800 chr6A 76.734 692 128 22 1051 1727 21505145 21505818 5.650000e-94 355.0
19 TraesCS6B01G055800 chr6A 78.465 404 82 5 1137 1536 20204113 20203711 4.560000e-65 259.0
20 TraesCS6B01G055800 chr6A 75.443 395 76 15 1668 2059 17380354 17379978 6.110000e-39 172.0
21 TraesCS6B01G055800 chr6D 93.009 987 42 8 2909 3882 21054116 21055088 0.000000e+00 1415.0
22 TraesCS6B01G055800 chr6D 90.228 788 71 2 1574 2355 21052905 21053692 0.000000e+00 1024.0
23 TraesCS6B01G055800 chr6D 85.547 1024 77 36 3300 4282 20965171 20964178 0.000000e+00 1005.0
24 TraesCS6B01G055800 chr6D 83.001 1153 127 34 401 1526 21049749 21050859 0.000000e+00 979.0
25 TraesCS6B01G055800 chr6D 80.303 1320 196 42 965 2267 21904167 21905439 0.000000e+00 939.0
26 TraesCS6B01G055800 chr6D 77.402 1332 209 50 1067 2355 21914759 21913477 0.000000e+00 708.0
27 TraesCS6B01G055800 chr6D 85.547 685 65 18 2696 3367 21905717 21906380 0.000000e+00 686.0
28 TraesCS6B01G055800 chr6D 94.292 438 19 4 2448 2883 21053690 21054123 0.000000e+00 665.0
29 TraesCS6B01G055800 chr6D 82.302 582 77 18 997 1555 21700411 21700989 8.940000e-132 481.0
30 TraesCS6B01G055800 chr6D 89.474 342 24 4 2926 3258 20965507 20965169 5.500000e-114 422.0
31 TraesCS6B01G055800 chr6D 94.942 257 10 1 4338 4594 21055412 21055665 2.570000e-107 399.0
32 TraesCS6B01G055800 chr6D 92.337 261 13 3 4094 4347 21055113 21055373 9.390000e-97 364.0
33 TraesCS6B01G055800 chr6D 90.458 262 18 4 4338 4594 20964092 20963833 5.690000e-89 339.0
34 TraesCS6B01G055800 chr6D 76.239 686 92 29 1429 2097 21889369 21890000 9.660000e-77 298.0
35 TraesCS6B01G055800 chr6D 73.091 1074 189 59 3248 4279 21038567 21039582 1.620000e-74 291.0
36 TraesCS6B01G055800 chr6D 91.623 191 16 0 1907 2097 21701344 21701534 9.800000e-67 265.0
37 TraesCS6B01G055800 chr6D 77.590 473 76 16 1907 2355 21612529 21612995 4.560000e-65 259.0
38 TraesCS6B01G055800 chr6D 78.079 406 80 7 1137 1536 20142398 20141996 9.870000e-62 248.0
39 TraesCS6B01G055800 chr6D 72.084 763 167 28 1131 1864 34577652 34578397 2.180000e-43 187.0
40 TraesCS6B01G055800 chr6D 97.872 47 1 0 2921 2967 20965551 20965505 1.060000e-11 82.4
41 TraesCS6B01G055800 chr6D 87.143 70 7 2 4449 4517 21704372 21704440 1.370000e-10 78.7
42 TraesCS6B01G055800 chr1B 97.143 105 3 0 2352 2456 156596661 156596557 1.310000e-40 178.0
43 TraesCS6B01G055800 chr1B 96.226 106 4 0 2345 2450 171887421 171887316 1.700000e-39 174.0
44 TraesCS6B01G055800 chr5B 97.115 104 3 0 2354 2457 701174757 701174654 4.720000e-40 176.0
45 TraesCS6B01G055800 chr4B 97.059 102 3 0 2349 2450 218583241 218583342 6.110000e-39 172.0
46 TraesCS6B01G055800 chr3B 93.162 117 8 0 2345 2461 647816554 647816670 6.110000e-39 172.0
47 TraesCS6B01G055800 chr3B 94.495 109 6 0 2345 2453 794347681 794347573 7.900000e-38 169.0
48 TraesCS6B01G055800 chr5D 93.103 116 5 3 2354 2466 335127648 335127533 2.840000e-37 167.0
49 TraesCS6B01G055800 chr5D 94.118 34 2 0 2843 2876 557210657 557210624 8.000000e-03 52.8
50 TraesCS6B01G055800 chr2D 91.129 124 7 4 2331 2450 629560793 629560670 1.020000e-36 165.0
51 TraesCS6B01G055800 chr1A 97.143 35 1 0 2838 2872 10074890 10074856 4.960000e-05 60.2
52 TraesCS6B01G055800 chr2B 90.476 42 2 2 916 955 242862843 242862802 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G055800 chr6B 36038051 36042644 4593 False 8484.000000 8484 100.000000 1 4594 1 chr6B.!!$F2 4593
1 TraesCS6B01G055800 chr6B 36137593 36142724 5131 False 542.750000 697 82.228500 992 3782 4 chr6B.!!$F4 2790
2 TraesCS6B01G055800 chr6B 35941141 35941727 586 False 339.000000 339 78.029000 3251 3846 1 chr6B.!!$F1 595
3 TraesCS6B01G055800 chr6B 36131651 36132569 918 False 331.500000 420 83.706000 1146 2097 2 chr6B.!!$F3 951
4 TraesCS6B01G055800 chr6A 21315891 21323427 7536 False 1697.500000 1796 93.352000 1013 3580 4 chr6A.!!$F3 2567
5 TraesCS6B01G055800 chr6A 21327532 21329673 2141 False 1623.000000 1796 94.022000 1356 3580 2 chr6A.!!$F4 2224
6 TraesCS6B01G055800 chr6A 21305727 21306828 1101 False 905.000000 905 82.014000 401 1533 1 chr6A.!!$F1 1132
7 TraesCS6B01G055800 chr6A 21505145 21505818 673 False 355.000000 355 76.734000 1051 1727 1 chr6A.!!$F2 676
8 TraesCS6B01G055800 chr6D 21904167 21906380 2213 False 812.500000 939 82.925000 965 3367 2 chr6D.!!$F7 2402
9 TraesCS6B01G055800 chr6D 21049749 21055665 5916 False 807.666667 1415 91.301500 401 4594 6 chr6D.!!$F5 4193
10 TraesCS6B01G055800 chr6D 21913477 21914759 1282 True 708.000000 708 77.402000 1067 2355 1 chr6D.!!$R2 1288
11 TraesCS6B01G055800 chr6D 20963833 20965551 1718 True 462.100000 1005 90.837750 2921 4594 4 chr6D.!!$R3 1673
12 TraesCS6B01G055800 chr6D 21889369 21890000 631 False 298.000000 298 76.239000 1429 2097 1 chr6D.!!$F3 668
13 TraesCS6B01G055800 chr6D 21038567 21039582 1015 False 291.000000 291 73.091000 3248 4279 1 chr6D.!!$F1 1031
14 TraesCS6B01G055800 chr6D 21700411 21704440 4029 False 274.900000 481 87.022667 997 4517 3 chr6D.!!$F6 3520

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
361 362 0.038166 GTGGGCATGGACAAGAGGAA 59.962 55.0 0.0 0.0 0.00 3.36 F
649 654 0.040204 CCCAGCCCAAAATCCTGTCT 59.960 55.0 0.0 0.0 0.00 3.41 F
957 982 0.109689 CACTCTTCACTCCCGTCGTC 60.110 60.0 0.0 0.0 0.00 4.20 F
974 999 0.175989 GTCAGCTAGGGTTTCCGAGG 59.824 60.0 0.0 0.0 36.45 4.63 F
975 1000 0.252103 TCAGCTAGGGTTTCCGAGGT 60.252 55.0 0.0 0.0 45.25 3.85 F
1635 7742 0.467384 AGGCCATGGAAGAGACATCG 59.533 55.0 18.4 0.0 0.00 3.84 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1290 5345 0.478942 TCCCGGAGAGATCGAGGAAT 59.521 55.000 0.73 0.0 0.0 3.01 R
2436 8599 0.971447 AACAGCTACTCCCTCCGTCC 60.971 60.000 0.00 0.0 0.0 4.79 R
2439 8602 2.100989 AGTTAACAGCTACTCCCTCCG 58.899 52.381 8.61 0.0 0.0 4.63 R
2866 11553 5.976534 CAGTAGCAACAACATAGTGCAAAAA 59.023 36.000 0.00 0.0 0.0 1.94 R
3208 11919 0.818040 GAACGGTGGCTTCCTGTTGT 60.818 55.000 11.29 0.0 0.0 3.32 R
3664 12408 2.700722 TGCATAACAACCTCGCCATA 57.299 45.000 0.00 0.0 0.0 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 1.663074 GCGAGCGGGAAGATGCTAG 60.663 63.158 0.00 0.00 42.60 3.42
27 28 0.596083 CGAGCGGGAAGATGCTAGTG 60.596 60.000 0.00 0.00 42.60 2.74
29 30 0.461961 AGCGGGAAGATGCTAGTGAC 59.538 55.000 0.00 0.00 40.28 3.67
30 31 0.175760 GCGGGAAGATGCTAGTGACA 59.824 55.000 0.00 0.00 0.00 3.58
32 33 2.477825 CGGGAAGATGCTAGTGACATG 58.522 52.381 0.00 0.00 0.00 3.21
34 35 2.435805 GGGAAGATGCTAGTGACATGGA 59.564 50.000 0.00 0.00 0.00 3.41
35 36 3.494048 GGGAAGATGCTAGTGACATGGAG 60.494 52.174 0.00 0.00 0.00 3.86
36 37 3.494048 GGAAGATGCTAGTGACATGGAGG 60.494 52.174 0.00 0.00 0.00 4.30
37 38 3.037851 AGATGCTAGTGACATGGAGGA 57.962 47.619 0.00 0.00 0.00 3.71
38 39 2.964464 AGATGCTAGTGACATGGAGGAG 59.036 50.000 0.00 0.00 0.00 3.69
39 40 1.489481 TGCTAGTGACATGGAGGAGG 58.511 55.000 0.00 0.00 0.00 4.30
40 41 0.755686 GCTAGTGACATGGAGGAGGG 59.244 60.000 0.00 0.00 0.00 4.30
42 43 1.043116 TAGTGACATGGAGGAGGGCG 61.043 60.000 0.00 0.00 0.00 6.13
43 44 3.083349 TGACATGGAGGAGGGCGG 61.083 66.667 0.00 0.00 0.00 6.13
85 86 1.281960 CGTGTATCGCCGAGGTAGG 59.718 63.158 0.00 0.00 0.00 3.18
86 87 1.658673 GTGTATCGCCGAGGTAGGG 59.341 63.158 0.00 0.00 0.00 3.53
95 96 4.530857 GAGGTAGGGCGCGTGCAT 62.531 66.667 24.18 13.19 45.35 3.96
96 97 4.530857 AGGTAGGGCGCGTGCATC 62.531 66.667 24.18 14.11 45.35 3.91
98 99 4.830765 GTAGGGCGCGTGCATCCA 62.831 66.667 24.18 1.15 45.35 3.41
99 100 4.529219 TAGGGCGCGTGCATCCAG 62.529 66.667 24.18 0.00 45.35 3.86
103 104 4.152625 GCGCGTGCATCCAGTGTC 62.153 66.667 17.66 0.00 42.15 3.67
104 105 3.490759 CGCGTGCATCCAGTGTCC 61.491 66.667 0.00 0.00 0.00 4.02
105 106 2.358615 GCGTGCATCCAGTGTCCA 60.359 61.111 0.00 0.00 0.00 4.02
106 107 2.680913 GCGTGCATCCAGTGTCCAC 61.681 63.158 0.00 0.00 0.00 4.02
107 108 2.382746 CGTGCATCCAGTGTCCACG 61.383 63.158 0.00 7.40 36.20 4.94
108 109 1.005037 GTGCATCCAGTGTCCACGA 60.005 57.895 0.00 0.00 36.20 4.35
109 110 1.016130 GTGCATCCAGTGTCCACGAG 61.016 60.000 0.00 0.00 36.20 4.18
110 111 1.448540 GCATCCAGTGTCCACGAGG 60.449 63.158 0.00 0.00 36.20 4.63
111 112 1.448540 CATCCAGTGTCCACGAGGC 60.449 63.158 0.00 0.00 36.20 4.70
112 113 3.006756 ATCCAGTGTCCACGAGGCG 62.007 63.158 0.00 0.00 36.20 5.52
113 114 3.680786 CCAGTGTCCACGAGGCGA 61.681 66.667 0.00 0.00 36.20 5.54
114 115 2.126307 CAGTGTCCACGAGGCGAG 60.126 66.667 0.00 0.00 36.20 5.03
115 116 3.374402 AGTGTCCACGAGGCGAGG 61.374 66.667 0.00 0.00 38.87 4.63
116 117 4.436998 GTGTCCACGAGGCGAGGG 62.437 72.222 3.62 0.52 38.11 4.30
118 119 3.827898 GTCCACGAGGCGAGGGAG 61.828 72.222 3.62 0.00 38.11 4.30
121 122 4.504916 CACGAGGCGAGGGAGCAG 62.505 72.222 0.00 0.00 39.27 4.24
124 125 2.835431 GAGGCGAGGGAGCAGCTA 60.835 66.667 0.00 0.00 39.27 3.32
125 126 2.123077 AGGCGAGGGAGCAGCTAT 60.123 61.111 0.00 0.00 39.27 2.97
126 127 2.153547 GAGGCGAGGGAGCAGCTATC 62.154 65.000 0.00 0.00 39.27 2.08
128 129 2.851071 GCGAGGGAGCAGCTATCGT 61.851 63.158 19.71 7.77 35.87 3.73
129 130 1.284408 CGAGGGAGCAGCTATCGTC 59.716 63.158 13.49 10.46 0.00 4.20
131 132 1.448922 GAGGGAGCAGCTATCGTCGT 61.449 60.000 0.00 0.00 0.00 4.34
132 133 1.299468 GGGAGCAGCTATCGTCGTG 60.299 63.158 0.00 0.00 0.00 4.35
134 135 1.946650 GAGCAGCTATCGTCGTGGC 60.947 63.158 0.00 0.00 0.00 5.01
135 136 2.202743 GCAGCTATCGTCGTGGCA 60.203 61.111 0.00 0.00 0.00 4.92
136 137 1.592669 GCAGCTATCGTCGTGGCAT 60.593 57.895 0.00 0.00 0.00 4.40
138 139 1.068083 AGCTATCGTCGTGGCATGG 59.932 57.895 6.90 0.00 0.00 3.66
139 140 1.227263 GCTATCGTCGTGGCATGGT 60.227 57.895 6.90 0.00 0.00 3.55
140 141 1.490693 GCTATCGTCGTGGCATGGTG 61.491 60.000 6.90 0.00 0.00 4.17
151 152 2.353958 CATGGTGCAGCTGGGAGT 59.646 61.111 17.12 0.00 0.00 3.85
152 153 2.044555 CATGGTGCAGCTGGGAGTG 61.045 63.158 17.12 2.96 0.00 3.51
155 156 4.729918 GTGCAGCTGGGAGTGGGG 62.730 72.222 17.12 0.00 0.00 4.96
158 159 2.285368 CAGCTGGGAGTGGGGGTA 60.285 66.667 5.57 0.00 0.00 3.69
159 160 1.923395 CAGCTGGGAGTGGGGGTAA 60.923 63.158 5.57 0.00 0.00 2.85
161 162 2.228480 GCTGGGAGTGGGGGTAACA 61.228 63.158 0.00 0.00 39.74 2.41
165 166 1.451387 GGAGTGGGGGTAACATGCG 60.451 63.158 0.00 0.00 39.74 4.73
168 169 1.003112 GTGGGGGTAACATGCGTCA 60.003 57.895 0.00 0.00 39.74 4.35
169 170 0.393808 GTGGGGGTAACATGCGTCAT 60.394 55.000 0.00 0.00 39.74 3.06
171 172 0.107410 GGGGGTAACATGCGTCATCA 60.107 55.000 0.00 0.00 39.74 3.07
172 173 1.299541 GGGGTAACATGCGTCATCAG 58.700 55.000 0.00 0.00 39.74 2.90
174 175 2.205074 GGGTAACATGCGTCATCAGAG 58.795 52.381 0.00 0.00 39.74 3.35
176 177 1.256376 GTAACATGCGTCATCAGAGCG 59.744 52.381 0.00 0.00 0.00 5.03
177 178 1.086067 AACATGCGTCATCAGAGCGG 61.086 55.000 0.00 0.00 0.00 5.52
178 179 2.107750 ATGCGTCATCAGAGCGGG 59.892 61.111 0.00 0.00 0.00 6.13
180 181 4.148825 GCGTCATCAGAGCGGGGT 62.149 66.667 0.00 0.00 0.00 4.95
181 182 2.202797 CGTCATCAGAGCGGGGTG 60.203 66.667 0.00 0.00 0.00 4.61
183 184 1.448540 GTCATCAGAGCGGGGTGTG 60.449 63.158 0.00 0.00 0.00 3.82
184 185 1.609210 TCATCAGAGCGGGGTGTGA 60.609 57.895 0.06 0.06 0.00 3.58
186 187 2.362369 ATCAGAGCGGGGTGTGAGG 61.362 63.158 4.10 0.00 0.00 3.86
188 189 4.640690 AGAGCGGGGTGTGAGGGT 62.641 66.667 0.00 0.00 0.00 4.34
194 195 4.250305 GGGTGTGAGGGTGTGCGT 62.250 66.667 0.00 0.00 0.00 5.24
196 197 1.070105 GGTGTGAGGGTGTGCGTTA 59.930 57.895 0.00 0.00 0.00 3.18
197 198 0.321298 GGTGTGAGGGTGTGCGTTAT 60.321 55.000 0.00 0.00 0.00 1.89
198 199 1.066716 GGTGTGAGGGTGTGCGTTATA 60.067 52.381 0.00 0.00 0.00 0.98
199 200 2.268298 GTGTGAGGGTGTGCGTTATAG 58.732 52.381 0.00 0.00 0.00 1.31
200 201 1.287425 GTGAGGGTGTGCGTTATAGC 58.713 55.000 0.00 0.00 37.71 2.97
201 202 0.899019 TGAGGGTGTGCGTTATAGCA 59.101 50.000 0.00 0.00 45.96 3.49
209 210 2.036958 TGCGTTATAGCAATGCTGGT 57.963 45.000 19.25 9.05 45.06 4.00
210 211 1.670295 TGCGTTATAGCAATGCTGGTG 59.330 47.619 19.25 4.32 45.06 4.17
211 212 1.939934 GCGTTATAGCAATGCTGGTGA 59.060 47.619 19.25 0.00 40.10 4.02
213 214 3.546815 GCGTTATAGCAATGCTGGTGAAG 60.547 47.826 19.25 6.87 40.10 3.02
214 215 3.871006 CGTTATAGCAATGCTGGTGAAGA 59.129 43.478 19.25 0.00 40.10 2.87
215 216 4.512944 CGTTATAGCAATGCTGGTGAAGAT 59.487 41.667 19.25 3.74 40.10 2.40
216 217 5.696270 CGTTATAGCAATGCTGGTGAAGATA 59.304 40.000 19.25 2.68 40.10 1.98
217 218 6.128715 CGTTATAGCAATGCTGGTGAAGATAG 60.129 42.308 19.25 0.00 40.10 2.08
218 219 2.928334 AGCAATGCTGGTGAAGATAGG 58.072 47.619 7.07 0.00 37.57 2.57
219 220 2.507058 AGCAATGCTGGTGAAGATAGGA 59.493 45.455 7.07 0.00 37.57 2.94
220 221 2.877168 GCAATGCTGGTGAAGATAGGAG 59.123 50.000 0.00 0.00 0.00 3.69
221 222 3.683847 GCAATGCTGGTGAAGATAGGAGT 60.684 47.826 0.00 0.00 0.00 3.85
223 224 2.820178 TGCTGGTGAAGATAGGAGTGA 58.180 47.619 0.00 0.00 0.00 3.41
224 225 2.762887 TGCTGGTGAAGATAGGAGTGAG 59.237 50.000 0.00 0.00 0.00 3.51
225 226 2.102252 GCTGGTGAAGATAGGAGTGAGG 59.898 54.545 0.00 0.00 0.00 3.86
229 230 1.751351 TGAAGATAGGAGTGAGGCACG 59.249 52.381 0.00 0.00 39.64 5.34
230 231 2.025155 GAAGATAGGAGTGAGGCACGA 58.975 52.381 0.00 0.00 39.64 4.35
232 233 0.671251 GATAGGAGTGAGGCACGAGG 59.329 60.000 0.00 0.00 39.64 4.63
233 234 0.259065 ATAGGAGTGAGGCACGAGGA 59.741 55.000 0.00 0.00 39.64 3.71
234 235 0.680280 TAGGAGTGAGGCACGAGGAC 60.680 60.000 0.00 0.00 39.64 3.85
235 236 2.276116 GGAGTGAGGCACGAGGACA 61.276 63.158 0.00 0.00 39.64 4.02
236 237 1.214062 GAGTGAGGCACGAGGACAG 59.786 63.158 0.00 0.00 39.64 3.51
237 238 2.219325 GAGTGAGGCACGAGGACAGG 62.219 65.000 0.00 0.00 39.64 4.00
238 239 2.203640 TGAGGCACGAGGACAGGT 60.204 61.111 0.00 0.00 0.00 4.00
240 241 2.524394 AGGCACGAGGACAGGTGT 60.524 61.111 0.00 0.00 36.54 4.16
242 243 2.430921 GCACGAGGACAGGTGTCG 60.431 66.667 4.07 0.16 45.65 4.35
243 244 2.430921 CACGAGGACAGGTGTCGC 60.431 66.667 4.07 0.00 45.65 5.19
244 245 2.910479 ACGAGGACAGGTGTCGCA 60.910 61.111 4.07 0.00 45.65 5.10
245 246 2.126307 CGAGGACAGGTGTCGCAG 60.126 66.667 4.07 0.00 45.65 5.18
246 247 2.262915 GAGGACAGGTGTCGCAGG 59.737 66.667 4.07 0.00 45.65 4.85
248 249 2.100879 GAGGACAGGTGTCGCAGGTT 62.101 60.000 4.07 0.00 45.65 3.50
250 251 1.961277 GACAGGTGTCGCAGGTTGG 60.961 63.158 0.00 0.00 35.12 3.77
251 252 2.111043 CAGGTGTCGCAGGTTGGT 59.889 61.111 0.00 0.00 0.00 3.67
252 253 2.111043 AGGTGTCGCAGGTTGGTG 59.889 61.111 0.00 0.00 0.00 4.17
253 254 2.978010 GGTGTCGCAGGTTGGTGG 60.978 66.667 0.00 0.00 0.00 4.61
254 255 2.110213 GTGTCGCAGGTTGGTGGA 59.890 61.111 0.00 0.00 0.00 4.02
255 256 1.961277 GTGTCGCAGGTTGGTGGAG 60.961 63.158 0.00 0.00 0.00 3.86
256 257 2.137528 TGTCGCAGGTTGGTGGAGA 61.138 57.895 0.00 0.00 0.00 3.71
257 258 1.374758 GTCGCAGGTTGGTGGAGAG 60.375 63.158 0.00 0.00 0.00 3.20
260 261 1.821061 CGCAGGTTGGTGGAGAGAGT 61.821 60.000 0.00 0.00 0.00 3.24
261 262 0.321122 GCAGGTTGGTGGAGAGAGTG 60.321 60.000 0.00 0.00 0.00 3.51
264 265 0.836400 GGTTGGTGGAGAGAGTGGGA 60.836 60.000 0.00 0.00 0.00 4.37
265 266 0.610687 GTTGGTGGAGAGAGTGGGAG 59.389 60.000 0.00 0.00 0.00 4.30
267 268 0.040351 TGGTGGAGAGAGTGGGAGAG 59.960 60.000 0.00 0.00 0.00 3.20
268 269 0.686112 GGTGGAGAGAGTGGGAGAGG 60.686 65.000 0.00 0.00 0.00 3.69
269 270 0.686112 GTGGAGAGAGTGGGAGAGGG 60.686 65.000 0.00 0.00 0.00 4.30
270 271 1.075600 GGAGAGAGTGGGAGAGGGG 60.076 68.421 0.00 0.00 0.00 4.79
271 272 1.760480 GAGAGAGTGGGAGAGGGGC 60.760 68.421 0.00 0.00 0.00 5.80
272 273 2.039624 GAGAGTGGGAGAGGGGCA 59.960 66.667 0.00 0.00 0.00 5.36
273 274 1.383803 GAGAGTGGGAGAGGGGCAT 60.384 63.158 0.00 0.00 0.00 4.40
275 276 2.693864 AGTGGGAGAGGGGCATGG 60.694 66.667 0.00 0.00 0.00 3.66
276 277 3.813724 GTGGGAGAGGGGCATGGG 61.814 72.222 0.00 0.00 0.00 4.00
290 291 3.797353 TGGGCCTCCATTCCTCGC 61.797 66.667 4.53 0.00 38.32 5.03
291 292 3.797353 GGGCCTCCATTCCTCGCA 61.797 66.667 0.84 0.00 0.00 5.10
292 293 2.272146 GGCCTCCATTCCTCGCAA 59.728 61.111 0.00 0.00 0.00 4.85
293 294 2.115291 GGCCTCCATTCCTCGCAAC 61.115 63.158 0.00 0.00 0.00 4.17
294 295 2.464459 GCCTCCATTCCTCGCAACG 61.464 63.158 0.00 0.00 0.00 4.10
296 297 1.815421 CTCCATTCCTCGCAACGGG 60.815 63.158 0.00 0.00 0.00 5.28
303 304 2.358737 CTCGCAACGGGGAGCTTT 60.359 61.111 0.00 0.00 45.53 3.51
305 306 3.737172 CGCAACGGGGAGCTTTGG 61.737 66.667 0.00 0.00 0.00 3.28
307 308 2.676471 CAACGGGGAGCTTTGGGG 60.676 66.667 0.00 0.00 0.00 4.96
322 323 2.851045 GGGGGCCACCAAAGAGAA 59.149 61.111 22.91 0.00 42.91 2.87
324 325 1.304464 GGGGCCACCAAAGAGAAGG 60.304 63.158 4.39 0.00 39.85 3.46
325 326 1.767692 GGGCCACCAAAGAGAAGGA 59.232 57.895 4.39 0.00 36.50 3.36
326 327 0.609406 GGGCCACCAAAGAGAAGGAC 60.609 60.000 4.39 0.00 36.50 3.85
327 328 0.110486 GGCCACCAAAGAGAAGGACA 59.890 55.000 0.00 0.00 0.00 4.02
329 330 2.087646 GCCACCAAAGAGAAGGACATC 58.912 52.381 0.00 0.00 0.00 3.06
330 331 2.350522 CCACCAAAGAGAAGGACATCG 58.649 52.381 0.00 0.00 0.00 3.84
331 332 2.028112 CCACCAAAGAGAAGGACATCGA 60.028 50.000 0.00 0.00 0.00 3.59
332 333 2.996621 CACCAAAGAGAAGGACATCGAC 59.003 50.000 0.00 0.00 0.00 4.20
333 334 2.632996 ACCAAAGAGAAGGACATCGACA 59.367 45.455 0.00 0.00 0.00 4.35
334 335 3.261897 ACCAAAGAGAAGGACATCGACAT 59.738 43.478 0.00 0.00 0.00 3.06
335 336 3.620374 CCAAAGAGAAGGACATCGACATG 59.380 47.826 0.00 0.00 35.92 3.21
336 337 4.498241 CAAAGAGAAGGACATCGACATGA 58.502 43.478 0.00 0.00 33.72 3.07
344 345 4.443857 ATCGACATGATGGGCGTG 57.556 55.556 0.00 0.00 35.45 5.34
345 346 1.227645 ATCGACATGATGGGCGTGG 60.228 57.895 0.00 0.00 37.85 4.94
346 347 2.665008 ATCGACATGATGGGCGTGGG 62.665 60.000 0.00 0.00 37.85 4.61
347 348 3.211963 GACATGATGGGCGTGGGC 61.212 66.667 0.00 0.00 37.85 5.36
348 349 3.993614 GACATGATGGGCGTGGGCA 62.994 63.158 0.00 0.00 42.47 5.36
349 350 2.520020 CATGATGGGCGTGGGCAT 60.520 61.111 0.00 0.00 42.47 4.40
350 351 2.520020 ATGATGGGCGTGGGCATG 60.520 61.111 0.00 0.00 42.47 4.06
351 352 4.818863 TGATGGGCGTGGGCATGG 62.819 66.667 0.00 0.00 42.47 3.66
353 354 4.820744 ATGGGCGTGGGCATGGAC 62.821 66.667 0.00 0.00 42.47 4.02
356 357 3.443045 GGCGTGGGCATGGACAAG 61.443 66.667 0.00 0.00 42.47 3.16
357 358 2.359850 GCGTGGGCATGGACAAGA 60.360 61.111 0.00 0.00 39.62 3.02
358 359 2.401766 GCGTGGGCATGGACAAGAG 61.402 63.158 0.00 0.00 39.62 2.85
360 361 1.685224 GTGGGCATGGACAAGAGGA 59.315 57.895 0.00 0.00 0.00 3.71
361 362 0.038166 GTGGGCATGGACAAGAGGAA 59.962 55.000 0.00 0.00 0.00 3.36
362 363 0.329261 TGGGCATGGACAAGAGGAAG 59.671 55.000 0.00 0.00 0.00 3.46
364 365 0.620556 GGCATGGACAAGAGGAAGGA 59.379 55.000 0.00 0.00 0.00 3.36
365 366 1.407989 GGCATGGACAAGAGGAAGGAG 60.408 57.143 0.00 0.00 0.00 3.69
367 368 2.679349 GCATGGACAAGAGGAAGGAGTC 60.679 54.545 0.00 0.00 0.00 3.36
368 369 1.257743 TGGACAAGAGGAAGGAGTCG 58.742 55.000 0.00 0.00 0.00 4.18
369 370 0.108567 GGACAAGAGGAAGGAGTCGC 60.109 60.000 0.00 0.00 0.00 5.19
370 371 0.892063 GACAAGAGGAAGGAGTCGCT 59.108 55.000 0.00 0.00 0.00 4.93
371 372 0.892063 ACAAGAGGAAGGAGTCGCTC 59.108 55.000 0.00 0.00 0.00 5.03
373 374 1.273606 CAAGAGGAAGGAGTCGCTCAA 59.726 52.381 8.71 0.00 31.08 3.02
375 376 0.174617 GAGGAAGGAGTCGCTCAAGG 59.825 60.000 8.71 0.00 31.08 3.61
376 377 1.219393 GGAAGGAGTCGCTCAAGGG 59.781 63.158 8.71 0.00 31.08 3.95
377 378 1.258445 GGAAGGAGTCGCTCAAGGGA 61.258 60.000 8.71 0.00 31.08 4.20
378 379 0.608640 GAAGGAGTCGCTCAAGGGAA 59.391 55.000 8.71 0.00 38.76 3.97
379 380 1.208293 GAAGGAGTCGCTCAAGGGAAT 59.792 52.381 8.71 0.00 38.76 3.01
380 381 0.827368 AGGAGTCGCTCAAGGGAATC 59.173 55.000 14.01 14.01 46.68 2.52
383 384 2.355209 GGAGTCGCTCAAGGGAATCTTT 60.355 50.000 19.44 0.00 46.62 2.52
384 385 3.339141 GAGTCGCTCAAGGGAATCTTTT 58.661 45.455 14.81 0.00 44.89 2.27
385 386 4.504858 GAGTCGCTCAAGGGAATCTTTTA 58.495 43.478 14.81 0.00 44.89 1.52
386 387 4.254492 AGTCGCTCAAGGGAATCTTTTAC 58.746 43.478 0.00 0.00 38.76 2.01
389 390 3.307242 CGCTCAAGGGAATCTTTTACTCG 59.693 47.826 0.00 0.00 32.41 4.18
390 391 3.623510 GCTCAAGGGAATCTTTTACTCGG 59.376 47.826 0.00 0.00 32.41 4.63
391 392 4.623171 GCTCAAGGGAATCTTTTACTCGGA 60.623 45.833 0.00 0.00 32.41 4.55
394 395 7.190335 TCAAGGGAATCTTTTACTCGGATTA 57.810 36.000 0.00 0.00 32.41 1.75
395 396 7.272978 TCAAGGGAATCTTTTACTCGGATTAG 58.727 38.462 0.00 0.00 32.41 1.73
397 398 4.755629 GGGAATCTTTTACTCGGATTAGGC 59.244 45.833 0.00 0.00 30.98 3.93
398 399 5.454897 GGGAATCTTTTACTCGGATTAGGCT 60.455 44.000 0.00 0.00 30.98 4.58
406 407 0.821517 TCGGATTAGGCTTTCGCTCA 59.178 50.000 0.00 0.00 36.09 4.26
409 410 1.943340 GGATTAGGCTTTCGCTCAAGG 59.057 52.381 0.00 0.00 36.09 3.61
410 411 1.943340 GATTAGGCTTTCGCTCAAGGG 59.057 52.381 0.00 0.00 36.09 3.95
414 415 1.177401 GGCTTTCGCTCAAGGGATTT 58.823 50.000 0.00 0.00 36.86 2.17
439 440 2.450476 ACTGGGATTAGGCTTTTGCTG 58.550 47.619 0.00 0.00 46.54 4.41
479 480 5.350633 TGGTGCACTTCTCAAATTCTTTTG 58.649 37.500 17.98 0.00 42.98 2.44
480 481 5.126869 TGGTGCACTTCTCAAATTCTTTTGA 59.873 36.000 17.98 1.63 46.88 2.69
492 493 8.696410 TCAAATTCTTTTGAGCTAAACGTTTT 57.304 26.923 20.19 0.19 44.81 2.43
493 494 9.790389 TCAAATTCTTTTGAGCTAAACGTTTTA 57.210 25.926 20.19 4.56 44.81 1.52
498 499 8.876275 TCTTTTGAGCTAAACGTTTTACTAGA 57.124 30.769 20.19 12.51 0.00 2.43
499 500 9.485206 TCTTTTGAGCTAAACGTTTTACTAGAT 57.515 29.630 20.19 9.01 0.00 1.98
501 502 9.872757 TTTTGAGCTAAACGTTTTACTAGATTG 57.127 29.630 20.19 0.00 0.00 2.67
502 503 8.821147 TTGAGCTAAACGTTTTACTAGATTGA 57.179 30.769 20.19 0.00 0.00 2.57
508 509 7.724305 AAACGTTTTACTAGATTGAGCAAGA 57.276 32.000 7.96 0.00 0.00 3.02
520 521 9.713740 CTAGATTGAGCAAGAACAATTTATCAC 57.286 33.333 0.00 0.00 36.94 3.06
524 525 9.715121 ATTGAGCAAGAACAATTTATCACATTT 57.285 25.926 0.00 0.00 33.72 2.32
544 548 9.865321 CACATTTATTCTGGAAGTGATTCATTT 57.135 29.630 0.00 0.00 33.76 2.32
595 599 0.688087 TTGTTGGGTTGGGTTGGGAC 60.688 55.000 0.00 0.00 0.00 4.46
642 647 1.376086 GCAAAGCCCAGCCCAAAAT 59.624 52.632 0.00 0.00 0.00 1.82
649 654 0.040204 CCCAGCCCAAAATCCTGTCT 59.960 55.000 0.00 0.00 0.00 3.41
650 655 1.284785 CCCAGCCCAAAATCCTGTCTA 59.715 52.381 0.00 0.00 0.00 2.59
651 656 2.369394 CCAGCCCAAAATCCTGTCTAC 58.631 52.381 0.00 0.00 0.00 2.59
665 676 0.179000 GTCTACCCTGCTGTCCATGG 59.821 60.000 4.97 4.97 35.55 3.66
693 704 3.378112 TCTTGAGCTTGGTGTGAACAAAG 59.622 43.478 0.00 0.00 0.00 2.77
698 709 4.494484 AGCTTGGTGTGAACAAAGTTTTC 58.506 39.130 0.00 0.00 0.00 2.29
700 711 5.417580 AGCTTGGTGTGAACAAAGTTTTCTA 59.582 36.000 0.00 0.00 0.00 2.10
701 712 6.071616 AGCTTGGTGTGAACAAAGTTTTCTAA 60.072 34.615 0.00 0.00 0.00 2.10
704 715 7.455641 TGGTGTGAACAAAGTTTTCTAAGAA 57.544 32.000 0.00 0.00 0.00 2.52
705 716 7.887381 TGGTGTGAACAAAGTTTTCTAAGAAA 58.113 30.769 0.00 0.00 0.00 2.52
707 718 8.644619 GGTGTGAACAAAGTTTTCTAAGAAAAC 58.355 33.333 3.71 3.71 39.67 2.43
709 720 9.620660 TGTGAACAAAGTTTTCTAAGAAAACTC 57.379 29.630 22.27 14.96 46.33 3.01
717 728 8.747538 AGTTTTCTAAGAAAACTCCAAGCTAA 57.252 30.769 19.04 0.00 44.50 3.09
721 732 6.518493 TCTAAGAAAACTCCAAGCTAAACGA 58.482 36.000 0.00 0.00 0.00 3.85
722 733 5.419760 AAGAAAACTCCAAGCTAAACGAC 57.580 39.130 0.00 0.00 0.00 4.34
731 742 7.582352 ACTCCAAGCTAAACGACTTATTTTTC 58.418 34.615 0.00 0.00 0.00 2.29
733 744 8.106247 TCCAAGCTAAACGACTTATTTTTCAT 57.894 30.769 0.00 0.00 0.00 2.57
734 745 9.221933 TCCAAGCTAAACGACTTATTTTTCATA 57.778 29.630 0.00 0.00 0.00 2.15
869 887 0.462759 AGAAATAGCCGAGCCACAGC 60.463 55.000 0.00 0.00 40.32 4.40
918 936 1.102154 CAGATCAGACACCTCGCTCT 58.898 55.000 0.00 0.00 0.00 4.09
921 939 1.748493 GATCAGACACCTCGCTCTTCT 59.252 52.381 0.00 0.00 0.00 2.85
923 941 1.542030 TCAGACACCTCGCTCTTCTTC 59.458 52.381 0.00 0.00 0.00 2.87
926 944 2.230266 AGACACCTCGCTCTTCTTCTTC 59.770 50.000 0.00 0.00 0.00 2.87
954 979 1.592223 CCCACTCTTCACTCCCGTC 59.408 63.158 0.00 0.00 0.00 4.79
957 982 0.109689 CACTCTTCACTCCCGTCGTC 60.110 60.000 0.00 0.00 0.00 4.20
968 993 1.590147 CCGTCGTCAGCTAGGGTTT 59.410 57.895 0.00 0.00 0.00 3.27
970 995 0.458025 CGTCGTCAGCTAGGGTTTCC 60.458 60.000 0.00 0.00 0.00 3.13
971 996 0.458025 GTCGTCAGCTAGGGTTTCCG 60.458 60.000 0.00 0.00 38.33 4.30
972 997 0.609957 TCGTCAGCTAGGGTTTCCGA 60.610 55.000 0.00 0.00 38.33 4.55
973 998 0.179134 CGTCAGCTAGGGTTTCCGAG 60.179 60.000 0.00 0.00 38.60 4.63
974 999 0.175989 GTCAGCTAGGGTTTCCGAGG 59.824 60.000 0.00 0.00 36.45 4.63
975 1000 0.252103 TCAGCTAGGGTTTCCGAGGT 60.252 55.000 0.00 0.00 45.25 3.85
976 1001 1.006281 TCAGCTAGGGTTTCCGAGGTA 59.994 52.381 0.00 0.00 43.09 3.08
977 1002 1.409427 CAGCTAGGGTTTCCGAGGTAG 59.591 57.143 0.00 0.00 43.09 3.18
990 1015 1.075896 AGGTAGCTCCTCTTCCCCG 60.076 63.158 0.00 0.00 44.42 5.73
1324 5382 1.369625 CGGGAAATTCTTCGGAGTGG 58.630 55.000 0.00 0.00 31.77 4.00
1579 7656 4.572571 TGGACAACCCACCACGCC 62.573 66.667 0.00 0.00 40.82 5.68
1597 7704 4.643387 ACACAGGACGGCAAGCCC 62.643 66.667 5.34 0.00 0.00 5.19
1635 7742 0.467384 AGGCCATGGAAGAGACATCG 59.533 55.000 18.40 0.00 0.00 3.84
1641 7748 2.347697 TGGAAGAGACATCGTTCACG 57.652 50.000 0.00 0.00 41.45 4.35
1658 7765 4.801330 TCACGGTGATCTCAACTGTATT 57.199 40.909 6.76 0.00 0.00 1.89
1885 8013 3.241678 CGGAGATTTTTCGCAACTAGACG 60.242 47.826 0.00 0.00 0.00 4.18
1974 8102 2.153645 GTGCTTCCACATCACACATCA 58.846 47.619 0.00 0.00 41.67 3.07
1991 8122 8.935844 TCACACATCAAACATCAGTTATCTAAC 58.064 33.333 0.00 0.00 36.84 2.34
2073 8204 8.421249 TGGATTCTTCTTGGTACATTTTCATT 57.579 30.769 0.00 0.00 39.30 2.57
2107 8238 4.397417 GGAGGTACTTGCTTCTACTACGAA 59.603 45.833 0.00 0.00 41.55 3.85
2110 8241 4.397417 GGTACTTGCTTCTACTACGAAGGA 59.603 45.833 0.00 0.00 40.52 3.36
2122 8253 8.665643 TCTACTACGAAGGAGAAGAATAGAAG 57.334 38.462 0.00 0.00 39.92 2.85
2129 8275 6.760770 CGAAGGAGAAGAATAGAAGCTTTCAT 59.239 38.462 0.00 0.00 0.00 2.57
2177 8326 2.365617 AGAAGGTGTTCAGTGATGTCGT 59.634 45.455 0.00 0.00 34.82 4.34
2183 8335 0.781787 TTCAGTGATGTCGTTTCGCG 59.218 50.000 0.00 0.00 43.01 5.87
2198 8350 6.248001 GTCGTTTCGCGGTATGTATATAGAAG 59.752 42.308 6.13 0.00 41.72 2.85
2217 8369 1.441732 GCTTCCCACCGTCGTTGTTT 61.442 55.000 0.00 0.00 0.00 2.83
2272 8424 4.385825 TGTTGTGTCCAAGTTATGTCCTC 58.614 43.478 0.00 0.00 0.00 3.71
2395 8558 7.146648 AGTAAGTGTCTCAACTTTGTACTAGC 58.853 38.462 0.00 0.00 40.77 3.42
2396 8559 5.793030 AGTGTCTCAACTTTGTACTAGCT 57.207 39.130 0.00 0.00 0.00 3.32
2397 8560 5.774630 AGTGTCTCAACTTTGTACTAGCTC 58.225 41.667 0.00 0.00 0.00 4.09
2436 8599 7.440523 ACTAAGCTCAAGACACTTATTTTGG 57.559 36.000 3.19 0.00 0.00 3.28
2439 8602 4.762251 AGCTCAAGACACTTATTTTGGGAC 59.238 41.667 0.00 0.00 0.00 4.46
2537 8703 4.837860 TGGTTTCCTGTTCTAATTGCCATT 59.162 37.500 0.00 0.00 0.00 3.16
2551 8717 8.956426 TCTAATTGCCATTTTAAGGACAAGTAG 58.044 33.333 4.92 4.92 39.41 2.57
2556 8723 7.657336 TGCCATTTTAAGGACAAGTAGAAAAG 58.343 34.615 0.00 0.00 0.00 2.27
2558 8725 8.023706 GCCATTTTAAGGACAAGTAGAAAAGAG 58.976 37.037 0.00 0.00 0.00 2.85
2571 8738 9.107177 CAAGTAGAAAAGAGATCATGCATACTT 57.893 33.333 0.00 0.00 31.74 2.24
2716 11397 6.389091 TGGATTGTTCAAGTCAAATATGCAC 58.611 36.000 0.00 0.00 0.00 4.57
2720 11401 9.793252 GATTGTTCAAGTCAAATATGCACTATT 57.207 29.630 0.00 0.00 0.00 1.73
2787 11468 9.626045 CTTTTTCTGGTCATTTTTACACCTATC 57.374 33.333 0.00 0.00 0.00 2.08
3208 11919 5.881923 AACTACTAACTTGTGAAGTCCCA 57.118 39.130 0.00 0.00 41.91 4.37
3227 11938 0.818040 ACAACAGGAAGCCACCGTTC 60.818 55.000 0.00 0.00 34.73 3.95
3280 11991 8.166726 AGGATTCACTTCTACATTCCTTTTTCT 58.833 33.333 0.00 0.00 0.00 2.52
3395 12108 5.104024 TGGGTAACAAGAGTTCCAAAGGTTA 60.104 40.000 0.00 0.00 39.15 2.85
3600 12330 2.093764 AGCTCAAGTGCATAGTCTCCAC 60.094 50.000 0.00 0.00 34.99 4.02
3601 12331 2.093764 GCTCAAGTGCATAGTCTCCACT 60.094 50.000 0.00 0.00 41.26 4.00
3659 12398 3.350833 AGGTCAGGCTGATTTGTTGATC 58.649 45.455 21.84 3.88 0.00 2.92
3664 12408 6.040166 GGTCAGGCTGATTTGTTGATCATAAT 59.960 38.462 21.84 0.00 35.62 1.28
3749 12519 3.006967 GTCTGTAGTATGCCATCCGGAAT 59.993 47.826 9.01 0.00 33.67 3.01
3894 12681 9.546909 TTAGATTAACTAAGTGAAAGTACGACG 57.453 33.333 0.00 0.00 36.33 5.12
3922 12709 7.154656 ACCTGCCATTTCTAAATTCAAGTTTC 58.845 34.615 0.00 0.00 0.00 2.78
3924 12711 7.543520 CCTGCCATTTCTAAATTCAAGTTTCTC 59.456 37.037 0.00 0.00 0.00 2.87
3925 12712 7.950512 TGCCATTTCTAAATTCAAGTTTCTCA 58.049 30.769 0.00 0.00 0.00 3.27
3943 12730 3.523157 TCTCAAATGGATCTTGCCAGGTA 59.477 43.478 0.00 0.00 42.15 3.08
3949 12740 2.111384 GGATCTTGCCAGGTACTCAGA 58.889 52.381 0.00 0.00 34.60 3.27
3959 12750 5.012664 TGCCAGGTACTCAGAATTAAGAACA 59.987 40.000 0.00 0.00 34.60 3.18
3965 12759 9.574516 AGGTACTCAGAATTAAGAACAAAATGT 57.425 29.630 0.00 0.00 0.00 2.71
3987 12782 8.943909 ATGTTCTATTAAAGGTCGACTTAAGG 57.056 34.615 16.46 10.09 38.85 2.69
3990 12785 6.870769 TCTATTAAAGGTCGACTTAAGGTGG 58.129 40.000 16.46 2.43 38.85 4.61
4013 12810 5.272397 GTGATCTACTCTACCGTTTACAGC 58.728 45.833 0.00 0.00 0.00 4.40
4040 12837 9.158233 CATTTCAGATTTTTCAATATGCCAGTT 57.842 29.630 0.00 0.00 32.47 3.16
4084 12898 5.221925 GCCAGGAGATGATAATTAGGTTCCA 60.222 44.000 0.00 0.00 0.00 3.53
4087 12901 8.605947 CCAGGAGATGATAATTAGGTTCCATTA 58.394 37.037 0.00 0.00 0.00 1.90
4282 13103 6.070309 TCCATTTGCCAAATAAGGTAAGCAAT 60.070 34.615 1.66 0.00 39.70 3.56
4283 13104 6.258507 CCATTTGCCAAATAAGGTAAGCAATC 59.741 38.462 1.66 0.00 39.70 2.67
4284 13105 5.991933 TTGCCAAATAAGGTAAGCAATCA 57.008 34.783 0.00 0.00 35.46 2.57
4285 13106 5.323371 TGCCAAATAAGGTAAGCAATCAC 57.677 39.130 0.00 0.00 0.00 3.06
4286 13107 4.159506 TGCCAAATAAGGTAAGCAATCACC 59.840 41.667 0.00 0.00 34.86 4.02
4314 13141 6.013842 AGAAAAAGGTAAGCAAAAGGATCG 57.986 37.500 0.00 0.00 0.00 3.69
4342 13990 2.777832 AACTGGATCTTGGAGACTGC 57.222 50.000 0.00 0.00 0.00 4.40
4352 14000 2.049185 GGAGACTGCTCAGCGAGGA 61.049 63.158 0.00 4.13 43.14 3.71
4355 14003 2.983930 GACTGCTCAGCGAGGACGT 61.984 63.158 0.00 0.00 41.98 4.34
4365 14013 1.359459 GCGAGGACGTTGGTGATTCC 61.359 60.000 0.00 0.00 41.98 3.01
4473 14121 2.045926 GTGGCGTTGCTGAGGGAT 60.046 61.111 0.00 0.00 0.00 3.85
4476 14124 1.227674 GGCGTTGCTGAGGGATAGG 60.228 63.158 0.00 0.00 0.00 2.57
4545 14193 3.191581 ACAGTCAACTGATGGAGACGTAG 59.808 47.826 16.71 0.00 46.59 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 3.151958 TAGCATCTTCCCGCTCGCC 62.152 63.158 0.00 0.00 39.70 5.54
8 9 0.596083 CACTAGCATCTTCCCGCTCG 60.596 60.000 0.00 0.00 39.70 5.03
10 11 0.461961 GTCACTAGCATCTTCCCGCT 59.538 55.000 0.00 0.00 42.34 5.52
12 13 2.477825 CATGTCACTAGCATCTTCCCG 58.522 52.381 0.00 0.00 0.00 5.14
17 18 2.964464 CTCCTCCATGTCACTAGCATCT 59.036 50.000 0.00 0.00 0.00 2.90
18 19 2.036992 CCTCCTCCATGTCACTAGCATC 59.963 54.545 0.00 0.00 0.00 3.91
19 20 2.045524 CCTCCTCCATGTCACTAGCAT 58.954 52.381 0.00 0.00 0.00 3.79
25 26 2.187946 CGCCCTCCTCCATGTCAC 59.812 66.667 0.00 0.00 0.00 3.67
27 28 3.866582 CCCGCCCTCCTCCATGTC 61.867 72.222 0.00 0.00 0.00 3.06
68 69 1.658673 CCCTACCTCGGCGATACAC 59.341 63.158 11.27 0.00 0.00 2.90
69 70 2.198287 GCCCTACCTCGGCGATACA 61.198 63.158 11.27 0.00 36.47 2.29
79 80 4.530857 GATGCACGCGCCCTACCT 62.531 66.667 5.73 0.00 37.32 3.08
82 83 4.529219 CTGGATGCACGCGCCCTA 62.529 66.667 5.73 0.00 37.32 3.53
86 87 4.152625 GACACTGGATGCACGCGC 62.153 66.667 5.73 0.00 39.24 6.86
87 88 3.490759 GGACACTGGATGCACGCG 61.491 66.667 3.53 3.53 0.00 6.01
88 89 2.358615 TGGACACTGGATGCACGC 60.359 61.111 0.00 0.00 0.00 5.34
89 90 2.382746 CGTGGACACTGGATGCACG 61.383 63.158 11.64 11.64 38.08 5.34
90 91 1.005037 TCGTGGACACTGGATGCAC 60.005 57.895 0.00 0.00 0.00 4.57
91 92 1.293179 CTCGTGGACACTGGATGCA 59.707 57.895 0.00 0.00 0.00 3.96
92 93 1.448540 CCTCGTGGACACTGGATGC 60.449 63.158 0.00 0.00 34.57 3.91
93 94 1.448540 GCCTCGTGGACACTGGATG 60.449 63.158 7.92 0.00 34.57 3.51
94 95 2.982130 GCCTCGTGGACACTGGAT 59.018 61.111 7.92 0.00 34.57 3.41
95 96 3.680786 CGCCTCGTGGACACTGGA 61.681 66.667 7.92 0.00 34.57 3.86
96 97 3.633094 CTCGCCTCGTGGACACTGG 62.633 68.421 7.92 4.28 34.57 4.00
98 99 3.374402 CCTCGCCTCGTGGACACT 61.374 66.667 7.92 0.00 42.19 3.55
99 100 4.436998 CCCTCGCCTCGTGGACAC 62.437 72.222 7.92 0.00 42.19 3.67
100 101 4.671590 TCCCTCGCCTCGTGGACA 62.672 66.667 7.92 0.00 42.19 4.02
104 105 4.504916 CTGCTCCCTCGCCTCGTG 62.505 72.222 0.00 0.00 0.00 4.35
107 108 2.153547 GATAGCTGCTCCCTCGCCTC 62.154 65.000 4.91 0.00 0.00 4.70
108 109 2.123077 ATAGCTGCTCCCTCGCCT 60.123 61.111 4.91 0.00 0.00 5.52
109 110 2.341911 GATAGCTGCTCCCTCGCC 59.658 66.667 4.91 0.00 0.00 5.54
110 111 2.049618 CGATAGCTGCTCCCTCGC 60.050 66.667 4.91 0.00 0.00 5.03
111 112 1.284408 GACGATAGCTGCTCCCTCG 59.716 63.158 20.53 20.53 42.67 4.63
112 113 1.284408 CGACGATAGCTGCTCCCTC 59.716 63.158 4.91 0.87 42.67 4.30
113 114 1.454111 ACGACGATAGCTGCTCCCT 60.454 57.895 4.91 0.00 42.67 4.20
114 115 1.299468 CACGACGATAGCTGCTCCC 60.299 63.158 4.91 0.00 42.67 4.30
115 116 1.299468 CCACGACGATAGCTGCTCC 60.299 63.158 4.91 0.00 42.67 4.70
116 117 1.946650 GCCACGACGATAGCTGCTC 60.947 63.158 4.91 0.00 42.67 4.26
118 119 1.592669 ATGCCACGACGATAGCTGC 60.593 57.895 0.00 0.00 42.67 5.25
120 121 1.068083 CCATGCCACGACGATAGCT 59.932 57.895 0.00 0.00 42.67 3.32
121 122 1.227263 ACCATGCCACGACGATAGC 60.227 57.895 0.00 1.37 42.67 2.97
122 123 1.490693 GCACCATGCCACGACGATAG 61.491 60.000 0.00 0.00 37.42 2.08
123 124 1.520564 GCACCATGCCACGACGATA 60.521 57.895 0.00 0.00 37.42 2.92
124 125 2.819595 GCACCATGCCACGACGAT 60.820 61.111 0.00 0.00 37.42 3.73
125 126 4.306967 TGCACCATGCCACGACGA 62.307 61.111 0.00 0.00 44.23 4.20
126 127 3.792047 CTGCACCATGCCACGACG 61.792 66.667 0.00 0.00 44.23 5.12
128 129 4.334118 AGCTGCACCATGCCACGA 62.334 61.111 1.02 0.00 44.23 4.35
129 130 4.111016 CAGCTGCACCATGCCACG 62.111 66.667 0.00 0.00 44.23 4.94
132 133 4.746309 TCCCAGCTGCACCATGCC 62.746 66.667 8.66 0.00 44.23 4.40
134 135 2.044555 CACTCCCAGCTGCACCATG 61.045 63.158 8.66 0.00 0.00 3.66
135 136 2.353958 CACTCCCAGCTGCACCAT 59.646 61.111 8.66 0.00 0.00 3.55
136 137 3.957586 CCACTCCCAGCTGCACCA 61.958 66.667 8.66 0.00 0.00 4.17
138 139 4.729918 CCCCACTCCCAGCTGCAC 62.730 72.222 8.66 0.00 0.00 4.57
142 143 1.923909 GTTACCCCCACTCCCAGCT 60.924 63.158 0.00 0.00 0.00 4.24
143 144 1.571773 ATGTTACCCCCACTCCCAGC 61.572 60.000 0.00 0.00 0.00 4.85
144 145 0.255890 CATGTTACCCCCACTCCCAG 59.744 60.000 0.00 0.00 0.00 4.45
145 146 1.858739 GCATGTTACCCCCACTCCCA 61.859 60.000 0.00 0.00 0.00 4.37
146 147 1.076995 GCATGTTACCCCCACTCCC 60.077 63.158 0.00 0.00 0.00 4.30
147 148 1.451387 CGCATGTTACCCCCACTCC 60.451 63.158 0.00 0.00 0.00 3.85
148 149 0.743345 GACGCATGTTACCCCCACTC 60.743 60.000 0.00 0.00 0.00 3.51
149 150 1.298667 GACGCATGTTACCCCCACT 59.701 57.895 0.00 0.00 0.00 4.00
151 152 0.107410 GATGACGCATGTTACCCCCA 60.107 55.000 0.00 0.00 0.00 4.96
152 153 0.107410 TGATGACGCATGTTACCCCC 60.107 55.000 0.00 0.00 0.00 5.40
155 156 1.594862 GCTCTGATGACGCATGTTACC 59.405 52.381 0.00 0.00 0.00 2.85
156 157 1.256376 CGCTCTGATGACGCATGTTAC 59.744 52.381 0.00 0.00 0.00 2.50
157 158 1.559831 CGCTCTGATGACGCATGTTA 58.440 50.000 0.00 0.00 0.00 2.41
158 159 1.086067 CCGCTCTGATGACGCATGTT 61.086 55.000 0.00 0.00 0.00 2.71
159 160 1.520120 CCGCTCTGATGACGCATGT 60.520 57.895 0.00 0.00 0.00 3.21
161 162 2.107750 CCCGCTCTGATGACGCAT 59.892 61.111 0.00 0.00 0.00 4.73
165 166 1.448540 CACACCCCGCTCTGATGAC 60.449 63.158 0.00 0.00 0.00 3.06
168 169 2.362369 CCTCACACCCCGCTCTGAT 61.362 63.158 0.00 0.00 0.00 2.90
169 170 2.997315 CCTCACACCCCGCTCTGA 60.997 66.667 0.00 0.00 0.00 3.27
171 172 4.640690 ACCCTCACACCCCGCTCT 62.641 66.667 0.00 0.00 0.00 4.09
172 173 4.394712 CACCCTCACACCCCGCTC 62.395 72.222 0.00 0.00 0.00 5.03
177 178 2.386064 TAACGCACACCCTCACACCC 62.386 60.000 0.00 0.00 0.00 4.61
178 179 0.321298 ATAACGCACACCCTCACACC 60.321 55.000 0.00 0.00 0.00 4.16
180 181 1.404986 GCTATAACGCACACCCTCACA 60.405 52.381 0.00 0.00 0.00 3.58
181 182 1.287425 GCTATAACGCACACCCTCAC 58.713 55.000 0.00 0.00 0.00 3.51
183 184 2.018542 TTGCTATAACGCACACCCTC 57.981 50.000 0.00 0.00 40.09 4.30
184 185 2.288666 CATTGCTATAACGCACACCCT 58.711 47.619 0.00 0.00 40.09 4.34
186 187 1.670811 AGCATTGCTATAACGCACACC 59.329 47.619 10.00 0.00 40.09 4.16
188 189 1.670295 CCAGCATTGCTATAACGCACA 59.330 47.619 11.55 0.00 40.09 4.57
190 191 1.670295 CACCAGCATTGCTATAACGCA 59.330 47.619 11.55 0.00 36.40 5.24
191 192 1.939934 TCACCAGCATTGCTATAACGC 59.060 47.619 11.55 0.00 36.40 4.84
192 193 3.871006 TCTTCACCAGCATTGCTATAACG 59.129 43.478 11.55 0.00 36.40 3.18
194 195 6.043127 TCCTATCTTCACCAGCATTGCTATAA 59.957 38.462 11.55 2.81 36.40 0.98
196 197 4.349048 TCCTATCTTCACCAGCATTGCTAT 59.651 41.667 11.55 1.96 36.40 2.97
197 198 3.711190 TCCTATCTTCACCAGCATTGCTA 59.289 43.478 11.55 0.00 36.40 3.49
198 199 2.507058 TCCTATCTTCACCAGCATTGCT 59.493 45.455 5.03 5.03 40.77 3.91
199 200 2.877168 CTCCTATCTTCACCAGCATTGC 59.123 50.000 0.00 0.00 0.00 3.56
200 201 3.875727 CACTCCTATCTTCACCAGCATTG 59.124 47.826 0.00 0.00 0.00 2.82
201 202 3.776969 TCACTCCTATCTTCACCAGCATT 59.223 43.478 0.00 0.00 0.00 3.56
202 203 3.378512 TCACTCCTATCTTCACCAGCAT 58.621 45.455 0.00 0.00 0.00 3.79
204 205 2.102252 CCTCACTCCTATCTTCACCAGC 59.898 54.545 0.00 0.00 0.00 4.85
205 206 2.102252 GCCTCACTCCTATCTTCACCAG 59.898 54.545 0.00 0.00 0.00 4.00
206 207 2.111384 GCCTCACTCCTATCTTCACCA 58.889 52.381 0.00 0.00 0.00 4.17
207 208 2.111384 TGCCTCACTCCTATCTTCACC 58.889 52.381 0.00 0.00 0.00 4.02
209 210 1.751351 CGTGCCTCACTCCTATCTTCA 59.249 52.381 0.00 0.00 31.34 3.02
210 211 2.025155 TCGTGCCTCACTCCTATCTTC 58.975 52.381 0.00 0.00 31.34 2.87
211 212 2.028130 CTCGTGCCTCACTCCTATCTT 58.972 52.381 0.00 0.00 31.34 2.40
213 214 0.671251 CCTCGTGCCTCACTCCTATC 59.329 60.000 0.00 0.00 31.34 2.08
214 215 0.259065 TCCTCGTGCCTCACTCCTAT 59.741 55.000 0.00 0.00 31.34 2.57
215 216 0.680280 GTCCTCGTGCCTCACTCCTA 60.680 60.000 0.00 0.00 31.34 2.94
216 217 1.979693 GTCCTCGTGCCTCACTCCT 60.980 63.158 0.00 0.00 31.34 3.69
217 218 2.219325 CTGTCCTCGTGCCTCACTCC 62.219 65.000 0.00 0.00 31.34 3.85
218 219 1.214062 CTGTCCTCGTGCCTCACTC 59.786 63.158 0.00 0.00 31.34 3.51
219 220 2.279069 CCTGTCCTCGTGCCTCACT 61.279 63.158 0.00 0.00 31.34 3.41
220 221 2.262915 CCTGTCCTCGTGCCTCAC 59.737 66.667 0.00 0.00 0.00 3.51
221 222 2.203640 ACCTGTCCTCGTGCCTCA 60.204 61.111 0.00 0.00 0.00 3.86
223 224 2.524394 ACACCTGTCCTCGTGCCT 60.524 61.111 0.00 0.00 33.09 4.75
224 225 2.048127 GACACCTGTCCTCGTGCC 60.048 66.667 0.00 0.00 39.07 5.01
225 226 2.430921 CGACACCTGTCCTCGTGC 60.431 66.667 0.00 0.00 41.86 5.34
229 230 2.100879 AACCTGCGACACCTGTCCTC 62.101 60.000 0.00 0.00 41.86 3.71
230 231 2.140792 AACCTGCGACACCTGTCCT 61.141 57.895 0.00 0.00 41.86 3.85
232 233 1.961277 CCAACCTGCGACACCTGTC 60.961 63.158 0.00 0.00 41.47 3.51
233 234 2.111043 CCAACCTGCGACACCTGT 59.889 61.111 0.00 0.00 0.00 4.00
234 235 2.111043 ACCAACCTGCGACACCTG 59.889 61.111 0.00 0.00 0.00 4.00
235 236 2.111043 CACCAACCTGCGACACCT 59.889 61.111 0.00 0.00 0.00 4.00
236 237 2.978010 CCACCAACCTGCGACACC 60.978 66.667 0.00 0.00 0.00 4.16
237 238 1.961277 CTCCACCAACCTGCGACAC 60.961 63.158 0.00 0.00 0.00 3.67
238 239 2.099652 CTCTCCACCAACCTGCGACA 62.100 60.000 0.00 0.00 0.00 4.35
240 241 1.533033 TCTCTCCACCAACCTGCGA 60.533 57.895 0.00 0.00 0.00 5.10
242 243 0.321122 CACTCTCTCCACCAACCTGC 60.321 60.000 0.00 0.00 0.00 4.85
243 244 0.322975 CCACTCTCTCCACCAACCTG 59.677 60.000 0.00 0.00 0.00 4.00
244 245 0.838122 CCCACTCTCTCCACCAACCT 60.838 60.000 0.00 0.00 0.00 3.50
245 246 0.836400 TCCCACTCTCTCCACCAACC 60.836 60.000 0.00 0.00 0.00 3.77
246 247 0.610687 CTCCCACTCTCTCCACCAAC 59.389 60.000 0.00 0.00 0.00 3.77
248 249 0.040351 CTCTCCCACTCTCTCCACCA 59.960 60.000 0.00 0.00 0.00 4.17
250 251 0.686112 CCCTCTCCCACTCTCTCCAC 60.686 65.000 0.00 0.00 0.00 4.02
251 252 1.700368 CCCTCTCCCACTCTCTCCA 59.300 63.158 0.00 0.00 0.00 3.86
252 253 1.075600 CCCCTCTCCCACTCTCTCC 60.076 68.421 0.00 0.00 0.00 3.71
253 254 1.760480 GCCCCTCTCCCACTCTCTC 60.760 68.421 0.00 0.00 0.00 3.20
254 255 1.895886 ATGCCCCTCTCCCACTCTCT 61.896 60.000 0.00 0.00 0.00 3.10
255 256 1.383803 ATGCCCCTCTCCCACTCTC 60.384 63.158 0.00 0.00 0.00 3.20
256 257 1.692042 CATGCCCCTCTCCCACTCT 60.692 63.158 0.00 0.00 0.00 3.24
257 258 2.750657 CCATGCCCCTCTCCCACTC 61.751 68.421 0.00 0.00 0.00 3.51
275 276 2.115291 GTTGCGAGGAATGGAGGCC 61.115 63.158 0.00 0.00 0.00 5.19
276 277 2.464459 CGTTGCGAGGAATGGAGGC 61.464 63.158 0.00 0.00 0.00 4.70
277 278 1.815421 CCGTTGCGAGGAATGGAGG 60.815 63.158 9.61 0.00 34.31 4.30
278 279 1.815421 CCCGTTGCGAGGAATGGAG 60.815 63.158 15.76 4.00 34.31 3.86
279 280 2.267642 CCCGTTGCGAGGAATGGA 59.732 61.111 15.76 0.00 34.31 3.41
281 282 1.815421 CTCCCCGTTGCGAGGAATG 60.815 63.158 0.00 0.00 0.00 2.67
282 283 2.584608 CTCCCCGTTGCGAGGAAT 59.415 61.111 0.00 0.00 0.00 3.01
283 284 4.388499 GCTCCCCGTTGCGAGGAA 62.388 66.667 0.00 0.00 0.00 3.36
286 287 2.358737 AAAGCTCCCCGTTGCGAG 60.359 61.111 0.00 0.00 0.00 5.03
287 288 2.668212 CAAAGCTCCCCGTTGCGA 60.668 61.111 0.00 0.00 0.00 5.10
288 289 3.737172 CCAAAGCTCCCCGTTGCG 61.737 66.667 0.00 0.00 32.46 4.85
290 291 2.676471 CCCCAAAGCTCCCCGTTG 60.676 66.667 0.00 0.00 33.43 4.10
291 292 3.979497 CCCCCAAAGCTCCCCGTT 61.979 66.667 0.00 0.00 0.00 4.44
305 306 1.304464 CTTCTCTTTGGTGGCCCCC 60.304 63.158 0.00 0.00 0.00 5.40
307 308 0.609406 GTCCTTCTCTTTGGTGGCCC 60.609 60.000 0.00 0.00 0.00 5.80
310 311 2.028112 TCGATGTCCTTCTCTTTGGTGG 60.028 50.000 0.00 0.00 0.00 4.61
311 312 2.996621 GTCGATGTCCTTCTCTTTGGTG 59.003 50.000 0.00 0.00 0.00 4.17
313 314 3.319137 TGTCGATGTCCTTCTCTTTGG 57.681 47.619 0.00 0.00 0.00 3.28
314 315 4.498241 TCATGTCGATGTCCTTCTCTTTG 58.502 43.478 0.00 0.00 0.00 2.77
316 317 4.691175 CATCATGTCGATGTCCTTCTCTT 58.309 43.478 0.00 0.00 45.61 2.85
317 318 4.319139 CATCATGTCGATGTCCTTCTCT 57.681 45.455 0.00 0.00 45.61 3.10
327 328 1.227645 CCACGCCCATCATGTCGAT 60.228 57.895 3.86 0.00 33.27 3.59
329 330 2.896854 CCCACGCCCATCATGTCG 60.897 66.667 0.00 0.00 0.00 4.35
330 331 3.211963 GCCCACGCCCATCATGTC 61.212 66.667 0.00 0.00 0.00 3.06
331 332 3.363410 ATGCCCACGCCCATCATGT 62.363 57.895 0.00 0.00 0.00 3.21
332 333 2.520020 ATGCCCACGCCCATCATG 60.520 61.111 0.00 0.00 0.00 3.07
333 334 2.520020 CATGCCCACGCCCATCAT 60.520 61.111 0.00 0.00 0.00 2.45
334 335 4.818863 CCATGCCCACGCCCATCA 62.819 66.667 0.00 0.00 0.00 3.07
335 336 4.504596 TCCATGCCCACGCCCATC 62.505 66.667 0.00 0.00 0.00 3.51
336 337 4.820744 GTCCATGCCCACGCCCAT 62.821 66.667 0.00 0.00 0.00 4.00
339 340 3.443045 CTTGTCCATGCCCACGCC 61.443 66.667 0.00 0.00 0.00 5.68
340 341 2.359850 TCTTGTCCATGCCCACGC 60.360 61.111 0.00 0.00 0.00 5.34
341 342 1.746615 CCTCTTGTCCATGCCCACG 60.747 63.158 0.00 0.00 0.00 4.94
343 344 0.329261 CTTCCTCTTGTCCATGCCCA 59.671 55.000 0.00 0.00 0.00 5.36
344 345 0.394899 CCTTCCTCTTGTCCATGCCC 60.395 60.000 0.00 0.00 0.00 5.36
345 346 0.620556 TCCTTCCTCTTGTCCATGCC 59.379 55.000 0.00 0.00 0.00 4.40
346 347 1.280421 ACTCCTTCCTCTTGTCCATGC 59.720 52.381 0.00 0.00 0.00 4.06
347 348 2.417924 CGACTCCTTCCTCTTGTCCATG 60.418 54.545 0.00 0.00 0.00 3.66
348 349 1.827969 CGACTCCTTCCTCTTGTCCAT 59.172 52.381 0.00 0.00 0.00 3.41
349 350 1.257743 CGACTCCTTCCTCTTGTCCA 58.742 55.000 0.00 0.00 0.00 4.02
350 351 0.108567 GCGACTCCTTCCTCTTGTCC 60.109 60.000 0.00 0.00 0.00 4.02
351 352 0.892063 AGCGACTCCTTCCTCTTGTC 59.108 55.000 0.00 0.00 0.00 3.18
353 354 0.891373 TGAGCGACTCCTTCCTCTTG 59.109 55.000 4.73 0.00 0.00 3.02
354 355 1.548269 CTTGAGCGACTCCTTCCTCTT 59.452 52.381 4.73 0.00 0.00 2.85
355 356 1.181786 CTTGAGCGACTCCTTCCTCT 58.818 55.000 4.73 0.00 0.00 3.69
356 357 0.174617 CCTTGAGCGACTCCTTCCTC 59.825 60.000 4.73 0.00 0.00 3.71
357 358 1.261238 CCCTTGAGCGACTCCTTCCT 61.261 60.000 4.73 0.00 0.00 3.36
358 359 1.219393 CCCTTGAGCGACTCCTTCC 59.781 63.158 4.73 0.00 0.00 3.46
360 361 1.208293 GATTCCCTTGAGCGACTCCTT 59.792 52.381 4.73 0.00 0.00 3.36
361 362 0.827368 GATTCCCTTGAGCGACTCCT 59.173 55.000 4.73 0.00 0.00 3.69
362 363 0.827368 AGATTCCCTTGAGCGACTCC 59.173 55.000 4.73 0.00 0.00 3.85
364 365 3.425162 AAAAGATTCCCTTGAGCGACT 57.575 42.857 0.00 0.00 34.79 4.18
365 366 4.254492 AGTAAAAGATTCCCTTGAGCGAC 58.746 43.478 0.00 0.00 34.79 5.19
367 368 3.307242 CGAGTAAAAGATTCCCTTGAGCG 59.693 47.826 0.00 0.00 34.79 5.03
368 369 3.623510 CCGAGTAAAAGATTCCCTTGAGC 59.376 47.826 0.00 0.00 34.79 4.26
369 370 5.086104 TCCGAGTAAAAGATTCCCTTGAG 57.914 43.478 0.00 0.00 34.79 3.02
370 371 5.693769 ATCCGAGTAAAAGATTCCCTTGA 57.306 39.130 0.00 0.00 34.79 3.02
371 372 6.483640 CCTAATCCGAGTAAAAGATTCCCTTG 59.516 42.308 0.00 0.00 34.79 3.61
373 374 5.454897 GCCTAATCCGAGTAAAAGATTCCCT 60.455 44.000 0.00 0.00 32.64 4.20
375 376 5.612351 AGCCTAATCCGAGTAAAAGATTCC 58.388 41.667 0.00 0.00 32.64 3.01
376 377 7.516943 CGAAAGCCTAATCCGAGTAAAAGATTC 60.517 40.741 0.00 0.00 32.64 2.52
377 378 6.258068 CGAAAGCCTAATCCGAGTAAAAGATT 59.742 38.462 0.00 0.00 34.68 2.40
378 379 5.753921 CGAAAGCCTAATCCGAGTAAAAGAT 59.246 40.000 0.00 0.00 0.00 2.40
379 380 5.107133 CGAAAGCCTAATCCGAGTAAAAGA 58.893 41.667 0.00 0.00 0.00 2.52
380 381 5.391060 CGAAAGCCTAATCCGAGTAAAAG 57.609 43.478 0.00 0.00 0.00 2.27
414 415 5.542251 AGCAAAAGCCTAATCCCAGTAAAAA 59.458 36.000 0.00 0.00 0.00 1.94
456 457 5.596836 AAAAGAATTTGAGAAGTGCACCA 57.403 34.783 14.63 0.51 39.02 4.17
479 480 7.063074 TGCTCAATCTAGTAAAACGTTTAGCTC 59.937 37.037 15.03 5.39 0.00 4.09
480 481 6.872020 TGCTCAATCTAGTAAAACGTTTAGCT 59.128 34.615 15.03 16.54 0.00 3.32
482 483 8.922676 TCTTGCTCAATCTAGTAAAACGTTTAG 58.077 33.333 15.03 8.08 0.00 1.85
484 485 7.724305 TCTTGCTCAATCTAGTAAAACGTTT 57.276 32.000 7.96 7.96 0.00 3.60
485 486 7.225931 TGTTCTTGCTCAATCTAGTAAAACGTT 59.774 33.333 0.00 0.00 0.00 3.99
486 487 6.704493 TGTTCTTGCTCAATCTAGTAAAACGT 59.296 34.615 0.00 0.00 0.00 3.99
487 488 7.117241 TGTTCTTGCTCAATCTAGTAAAACG 57.883 36.000 0.00 0.00 0.00 3.60
488 489 9.899226 AATTGTTCTTGCTCAATCTAGTAAAAC 57.101 29.630 0.00 0.00 33.86 2.43
493 494 9.453572 TGATAAATTGTTCTTGCTCAATCTAGT 57.546 29.630 0.00 0.00 33.86 2.57
496 497 8.114331 TGTGATAAATTGTTCTTGCTCAATCT 57.886 30.769 0.00 0.00 33.86 2.40
497 498 8.922058 ATGTGATAAATTGTTCTTGCTCAATC 57.078 30.769 0.00 0.00 33.86 2.67
498 499 9.715121 AAATGTGATAAATTGTTCTTGCTCAAT 57.285 25.926 0.00 0.00 36.07 2.57
516 517 8.812513 TGAATCACTTCCAGAATAAATGTGAT 57.187 30.769 0.00 0.00 42.93 3.06
565 569 5.489637 ACCCAACCCAACAATATGTAGAGTA 59.510 40.000 0.00 0.00 0.00 2.59
579 583 2.305314 CTGGTCCCAACCCAACCCAA 62.305 60.000 0.00 0.00 45.83 4.12
581 585 2.117423 CTGGTCCCAACCCAACCC 59.883 66.667 0.00 0.00 45.83 4.11
583 587 2.600470 GCCTGGTCCCAACCCAAC 60.600 66.667 0.00 0.00 45.83 3.77
595 599 0.248289 CCTCAAAATGCCAAGCCTGG 59.752 55.000 0.00 0.00 46.65 4.45
610 614 1.228398 TTTGCAATGCCCGACCTCA 60.228 52.632 1.53 0.00 0.00 3.86
632 637 2.369394 GGTAGACAGGATTTTGGGCTG 58.631 52.381 0.00 0.00 0.00 4.85
633 638 1.285078 GGGTAGACAGGATTTTGGGCT 59.715 52.381 0.00 0.00 0.00 5.19
634 639 1.285078 AGGGTAGACAGGATTTTGGGC 59.715 52.381 0.00 0.00 0.00 5.36
642 647 0.614979 GGACAGCAGGGTAGACAGGA 60.615 60.000 0.00 0.00 0.00 3.86
649 654 3.739922 CCCATGGACAGCAGGGTA 58.260 61.111 15.22 0.00 36.52 3.69
651 656 0.542702 AAAACCCATGGACAGCAGGG 60.543 55.000 15.22 0.00 46.96 4.45
665 676 3.130340 TCACACCAAGCTCAAGAAAAACC 59.870 43.478 0.00 0.00 0.00 3.27
693 704 9.234384 GTTTAGCTTGGAGTTTTCTTAGAAAAC 57.766 33.333 31.66 31.66 39.67 2.43
698 709 6.424207 AGTCGTTTAGCTTGGAGTTTTCTTAG 59.576 38.462 0.00 0.00 0.00 2.18
700 711 5.123936 AGTCGTTTAGCTTGGAGTTTTCTT 58.876 37.500 0.00 0.00 0.00 2.52
701 712 4.704965 AGTCGTTTAGCTTGGAGTTTTCT 58.295 39.130 0.00 0.00 0.00 2.52
704 715 7.506328 AAATAAGTCGTTTAGCTTGGAGTTT 57.494 32.000 0.00 0.00 0.00 2.66
705 716 7.506328 AAAATAAGTCGTTTAGCTTGGAGTT 57.494 32.000 0.00 0.00 0.00 3.01
707 718 7.581476 TGAAAAATAAGTCGTTTAGCTTGGAG 58.419 34.615 0.00 0.00 0.00 3.86
709 720 9.834628 TTATGAAAAATAAGTCGTTTAGCTTGG 57.165 29.630 0.00 0.00 0.00 3.61
813 831 6.659242 GGGATCAGAGAATACCTGAACAAAAA 59.341 38.462 0.00 0.00 43.07 1.94
814 832 6.180472 GGGATCAGAGAATACCTGAACAAAA 58.820 40.000 0.00 0.00 43.07 2.44
823 841 3.800604 GCAGTTCGGGATCAGAGAATACC 60.801 52.174 0.00 0.00 0.00 2.73
869 887 9.590451 AATTGGTTTCAGAGTATATGCATTTTG 57.410 29.630 3.54 0.00 0.00 2.44
918 936 1.361197 GGGGATTTGGGGGAAGAAGAA 59.639 52.381 0.00 0.00 0.00 2.52
921 939 0.411848 GTGGGGATTTGGGGGAAGAA 59.588 55.000 0.00 0.00 0.00 2.52
923 941 0.033109 GAGTGGGGATTTGGGGGAAG 60.033 60.000 0.00 0.00 0.00 3.46
926 944 0.033109 GAAGAGTGGGGATTTGGGGG 60.033 60.000 0.00 0.00 0.00 5.40
954 979 0.179134 CTCGGAAACCCTAGCTGACG 60.179 60.000 0.00 0.00 0.00 4.35
957 982 1.409427 CTACCTCGGAAACCCTAGCTG 59.591 57.143 0.00 0.00 0.00 4.24
973 998 2.134933 CCGGGGAAGAGGAGCTACC 61.135 68.421 0.00 0.00 39.35 3.18
974 999 2.134933 CCCGGGGAAGAGGAGCTAC 61.135 68.421 14.71 0.00 0.00 3.58
975 1000 2.282446 CCCGGGGAAGAGGAGCTA 59.718 66.667 14.71 0.00 0.00 3.32
1277 5332 2.768344 GGAATCCGAGGAGGGGCA 60.768 66.667 0.00 0.00 41.52 5.36
1290 5345 0.478942 TCCCGGAGAGATCGAGGAAT 59.521 55.000 0.73 0.00 0.00 3.01
1324 5382 3.689002 CTGAAGGAGAAGGCGGGGC 62.689 68.421 0.00 0.00 0.00 5.80
1446 5519 3.370104 GAAGGGAGATCTGTTGAGGAGA 58.630 50.000 0.00 0.00 0.00 3.71
1498 5577 4.814294 GAGGTACCGCCGGTGCAG 62.814 72.222 25.44 0.00 40.07 4.41
1579 7656 3.357079 GGCTTGCCGTCCTGTGTG 61.357 66.667 0.00 0.00 0.00 3.82
1635 7742 2.755650 ACAGTTGAGATCACCGTGAAC 58.244 47.619 5.07 2.66 0.00 3.18
1641 7748 2.030946 GCGCAATACAGTTGAGATCACC 59.969 50.000 0.30 0.00 0.00 4.02
1650 7757 3.486875 GCTTATTTCCGCGCAATACAGTT 60.487 43.478 8.75 0.00 0.00 3.16
1658 7765 2.760159 GCCTGCTTATTTCCGCGCA 61.760 57.895 8.75 0.00 0.00 6.09
1885 8013 2.223377 CGCACTGTTTGAAAGGACCTAC 59.777 50.000 0.00 0.00 0.00 3.18
1974 8102 7.108841 TCGCCTAGTTAGATAACTGATGTTT 57.891 36.000 14.15 0.00 45.44 2.83
1991 8122 1.094785 CCCACCATTGTTTCGCCTAG 58.905 55.000 0.00 0.00 0.00 3.02
2073 8204 3.007614 GCAAGTACCTCCCTGTTGAACTA 59.992 47.826 0.00 0.00 0.00 2.24
2107 8238 6.956497 ACATGAAAGCTTCTATTCTTCTCCT 58.044 36.000 0.00 0.00 0.00 3.69
2110 8241 7.170965 TCCAACATGAAAGCTTCTATTCTTCT 58.829 34.615 0.00 0.00 0.00 2.85
2116 8247 8.985315 TTGATATCCAACATGAAAGCTTCTAT 57.015 30.769 0.00 0.00 0.00 1.98
2122 8253 8.483307 AATGTTTTGATATCCAACATGAAAGC 57.517 30.769 22.15 9.13 39.66 3.51
2177 8326 6.263516 AGCTTCTATATACATACCGCGAAA 57.736 37.500 8.23 0.00 0.00 3.46
2183 8335 6.627508 CGGTGGGAAGCTTCTATATACATACC 60.628 46.154 25.05 16.33 0.00 2.73
2198 8350 1.441732 AAACAACGACGGTGGGAAGC 61.442 55.000 18.62 0.00 0.00 3.86
2407 8570 9.555727 AAATAAGTGTCTTGAGCTTAGTACAAA 57.444 29.630 0.00 0.00 0.00 2.83
2411 8574 7.606456 CCCAAAATAAGTGTCTTGAGCTTAGTA 59.394 37.037 0.00 0.00 0.00 1.82
2412 8575 6.431234 CCCAAAATAAGTGTCTTGAGCTTAGT 59.569 38.462 0.00 0.00 0.00 2.24
2413 8576 6.655003 TCCCAAAATAAGTGTCTTGAGCTTAG 59.345 38.462 0.00 0.00 0.00 2.18
2414 8577 6.430000 GTCCCAAAATAAGTGTCTTGAGCTTA 59.570 38.462 0.00 0.00 0.00 3.09
2415 8578 5.241728 GTCCCAAAATAAGTGTCTTGAGCTT 59.758 40.000 0.00 0.00 0.00 3.74
2416 8579 4.762251 GTCCCAAAATAAGTGTCTTGAGCT 59.238 41.667 0.00 0.00 0.00 4.09
2417 8580 4.378459 CGTCCCAAAATAAGTGTCTTGAGC 60.378 45.833 0.00 0.00 0.00 4.26
2418 8581 4.154195 CCGTCCCAAAATAAGTGTCTTGAG 59.846 45.833 0.00 0.00 0.00 3.02
2419 8582 4.069304 CCGTCCCAAAATAAGTGTCTTGA 58.931 43.478 0.00 0.00 0.00 3.02
2420 8583 4.069304 TCCGTCCCAAAATAAGTGTCTTG 58.931 43.478 0.00 0.00 0.00 3.02
2421 8584 4.324267 CTCCGTCCCAAAATAAGTGTCTT 58.676 43.478 0.00 0.00 0.00 3.01
2436 8599 0.971447 AACAGCTACTCCCTCCGTCC 60.971 60.000 0.00 0.00 0.00 4.79
2439 8602 2.100989 AGTTAACAGCTACTCCCTCCG 58.899 52.381 8.61 0.00 0.00 4.63
2516 8682 8.825667 TTAAAATGGCAATTAGAACAGGAAAC 57.174 30.769 0.00 0.00 0.00 2.78
2556 8723 7.117523 CAGCCTACTTAAAGTATGCATGATCTC 59.882 40.741 10.16 0.00 42.39 2.75
2558 8725 6.148480 CCAGCCTACTTAAAGTATGCATGATC 59.852 42.308 10.16 0.00 42.39 2.92
2674 11353 9.458374 AACAATCCAACGTTAAACTTGATTTAG 57.542 29.630 0.00 0.00 34.22 1.85
2787 11468 9.003112 GTCAAACGAACATCATGAGATAAATTG 57.997 33.333 0.09 1.96 31.88 2.32
2866 11553 5.976534 CAGTAGCAACAACATAGTGCAAAAA 59.023 36.000 0.00 0.00 0.00 1.94
3208 11919 0.818040 GAACGGTGGCTTCCTGTTGT 60.818 55.000 11.29 0.00 0.00 3.32
3280 11991 4.951715 AGTCCAGATTGAAATGCATAGCAA 59.048 37.500 14.24 14.24 43.62 3.91
3395 12108 3.119495 GGAAGAAGCACGGCACATAAAAT 60.119 43.478 0.00 0.00 0.00 1.82
3600 12330 4.837860 AGCATATTCTAACCCTGGAGAGAG 59.162 45.833 0.00 0.00 0.00 3.20
3601 12331 4.590647 CAGCATATTCTAACCCTGGAGAGA 59.409 45.833 0.00 0.00 0.00 3.10
3659 12398 5.181056 TGCATAACAACCTCGCCATATTATG 59.819 40.000 0.00 0.00 33.61 1.90
3664 12408 2.700722 TGCATAACAACCTCGCCATA 57.299 45.000 0.00 0.00 0.00 2.74
3894 12681 6.152831 ACTTGAATTTAGAAATGGCAGGTACC 59.847 38.462 2.73 2.73 28.94 3.34
3922 12709 2.731572 ACCTGGCAAGATCCATTTGAG 58.268 47.619 0.00 0.00 35.22 3.02
3924 12711 3.624777 AGTACCTGGCAAGATCCATTTG 58.375 45.455 0.00 0.00 35.22 2.32
3925 12712 3.266772 TGAGTACCTGGCAAGATCCATTT 59.733 43.478 0.00 0.00 35.22 2.32
3932 12719 5.483937 TCTTAATTCTGAGTACCTGGCAAGA 59.516 40.000 0.00 0.00 0.00 3.02
3965 12759 7.038799 ACCACCTTAAGTCGACCTTTAATAGAA 60.039 37.037 13.01 0.00 34.46 2.10
3976 12771 3.870633 AGATCACCACCTTAAGTCGAC 57.129 47.619 7.70 7.70 0.00 4.20
3977 12772 4.597004 AGTAGATCACCACCTTAAGTCGA 58.403 43.478 0.97 0.00 0.00 4.20
3984 12779 3.288964 CGGTAGAGTAGATCACCACCTT 58.711 50.000 0.00 0.00 31.98 3.50
3985 12780 2.241685 ACGGTAGAGTAGATCACCACCT 59.758 50.000 0.00 0.00 31.98 4.00
3986 12781 2.652590 ACGGTAGAGTAGATCACCACC 58.347 52.381 0.00 0.00 31.98 4.61
3987 12782 4.715527 AAACGGTAGAGTAGATCACCAC 57.284 45.455 0.00 0.00 31.98 4.16
3990 12785 5.272397 GCTGTAAACGGTAGAGTAGATCAC 58.728 45.833 0.00 0.00 0.00 3.06
4013 12810 7.767198 ACTGGCATATTGAAAAATCTGAAATGG 59.233 33.333 0.00 0.00 0.00 3.16
4056 12854 5.485708 ACCTAATTATCATCTCCTGGCTACC 59.514 44.000 0.00 0.00 0.00 3.18
4057 12855 6.613153 ACCTAATTATCATCTCCTGGCTAC 57.387 41.667 0.00 0.00 0.00 3.58
4058 12856 6.213600 GGAACCTAATTATCATCTCCTGGCTA 59.786 42.308 0.00 0.00 0.00 3.93
4059 12857 5.013599 GGAACCTAATTATCATCTCCTGGCT 59.986 44.000 0.00 0.00 0.00 4.75
4060 12858 5.221925 TGGAACCTAATTATCATCTCCTGGC 60.222 44.000 0.00 0.00 0.00 4.85
4061 12859 6.439636 TGGAACCTAATTATCATCTCCTGG 57.560 41.667 0.00 0.00 0.00 4.45
4103 12917 7.669427 TGCAAACAAGAATACATGAATCCTTT 58.331 30.769 0.00 0.00 0.00 3.11
4104 12918 7.230849 TGCAAACAAGAATACATGAATCCTT 57.769 32.000 0.00 0.00 0.00 3.36
4286 13107 7.264947 TCCTTTTGCTTACCTTTTTCTTGAAG 58.735 34.615 0.00 0.00 0.00 3.02
4288 13109 6.783708 TCCTTTTGCTTACCTTTTTCTTGA 57.216 33.333 0.00 0.00 0.00 3.02
4289 13110 6.363357 CGATCCTTTTGCTTACCTTTTTCTTG 59.637 38.462 0.00 0.00 0.00 3.02
4290 13111 6.447162 CGATCCTTTTGCTTACCTTTTTCTT 58.553 36.000 0.00 0.00 0.00 2.52
4291 13112 5.048013 CCGATCCTTTTGCTTACCTTTTTCT 60.048 40.000 0.00 0.00 0.00 2.52
4292 13113 5.161358 CCGATCCTTTTGCTTACCTTTTTC 58.839 41.667 0.00 0.00 0.00 2.29
4314 13141 6.539103 GTCTCCAAGATCCAGTTTAACATACC 59.461 42.308 0.00 0.00 0.00 2.73
4342 13990 1.734477 CACCAACGTCCTCGCTGAG 60.734 63.158 0.00 0.00 41.18 3.35
4352 14000 0.034896 AAGAGCGGAATCACCAACGT 59.965 50.000 0.00 0.00 38.90 3.99
4355 14003 2.552315 GTTGAAAGAGCGGAATCACCAA 59.448 45.455 0.00 0.00 38.90 3.67
4365 14013 2.223157 TGAAAACACCGTTGAAAGAGCG 60.223 45.455 0.00 0.00 0.00 5.03
4473 14121 0.106868 TAGTCGTAGCAGCAGCCCTA 60.107 55.000 0.00 0.00 43.56 3.53
4476 14124 0.173708 AAGTAGTCGTAGCAGCAGCC 59.826 55.000 0.00 0.00 43.56 4.85
4559 14207 6.167685 CAATTTCATCATTTGGCTTCTGGAA 58.832 36.000 0.00 0.00 0.00 3.53
4560 14208 5.726397 CAATTTCATCATTTGGCTTCTGGA 58.274 37.500 0.00 0.00 0.00 3.86
4561 14209 4.331717 GCAATTTCATCATTTGGCTTCTGG 59.668 41.667 0.00 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.