Multiple sequence alignment - TraesCS6B01G054300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G054300 chr6B 100.000 3071 0 0 1 3071 34686279 34683209 0.000000e+00 5672.0
1 TraesCS6B01G054300 chr6B 80.614 1336 225 22 881 2197 34341484 34340164 0.000000e+00 1002.0
2 TraesCS6B01G054300 chr6B 80.368 1304 217 24 912 2193 35529359 35528073 0.000000e+00 953.0
3 TraesCS6B01G054300 chr6B 100.000 36 0 0 2785 2820 34683456 34683421 1.980000e-07 67.6
4 TraesCS6B01G054300 chr6B 100.000 36 0 0 2824 2859 34683495 34683460 1.980000e-07 67.6
5 TraesCS6B01G054300 chr6A 88.714 2091 145 46 828 2900 20340076 20338059 0.000000e+00 2470.0
6 TraesCS6B01G054300 chr6A 81.535 1251 198 18 966 2197 20310455 20309219 0.000000e+00 1000.0
7 TraesCS6B01G054300 chr6A 80.383 1305 219 23 907 2193 20522361 20521076 0.000000e+00 957.0
8 TraesCS6B01G054300 chr6A 88.448 554 44 10 1 536 20340634 20340083 0.000000e+00 651.0
9 TraesCS6B01G054300 chr6A 97.222 36 1 0 1 36 20340289 20340254 9.190000e-06 62.1
10 TraesCS6B01G054300 chr6D 81.049 1335 221 17 881 2197 20312275 20310955 0.000000e+00 1035.0
11 TraesCS6B01G054300 chr6D 80.200 1303 227 19 907 2193 20602623 20601336 0.000000e+00 948.0
12 TraesCS6B01G054300 chrUn 80.824 1335 224 17 881 2197 273854757 273856077 0.000000e+00 1018.0
13 TraesCS6B01G054300 chr7D 79.460 1222 219 20 893 2094 632406530 632405321 0.000000e+00 837.0
14 TraesCS6B01G054300 chr7B 79.174 1138 211 15 956 2076 744570691 744569563 0.000000e+00 765.0
15 TraesCS6B01G054300 chr7B 96.897 290 9 0 537 826 728122423 728122712 1.280000e-133 486.0
16 TraesCS6B01G054300 chr7B 96.564 291 10 0 537 827 704665378 704665668 1.660000e-132 483.0
17 TraesCS6B01G054300 chr7B 96.207 290 11 0 537 826 750113032 750113321 2.770000e-130 475.0
18 TraesCS6B01G054300 chr7B 98.113 159 3 0 2906 3064 498899603 498899445 8.390000e-71 278.0
19 TraesCS6B01G054300 chr2A 97.251 291 8 0 537 827 434580249 434579959 7.650000e-136 494.0
20 TraesCS6B01G054300 chr5D 95.695 302 11 2 526 827 536022038 536022337 4.600000e-133 484.0
21 TraesCS6B01G054300 chr3B 96.259 294 11 0 537 830 776503384 776503091 1.660000e-132 483.0
22 TraesCS6B01G054300 chr3B 98.701 154 2 0 2913 3066 239259831 239259984 1.080000e-69 274.0
23 TraesCS6B01G054300 chr3B 97.484 159 4 0 2906 3064 818856311 818856153 3.900000e-69 272.0
24 TraesCS6B01G054300 chr5B 96.552 290 10 0 537 826 8364021 8364310 5.960000e-132 481.0
25 TraesCS6B01G054300 chr5B 98.113 159 3 0 2907 3065 659769018 659769176 8.390000e-71 278.0
26 TraesCS6B01G054300 chr4B 96.220 291 11 0 537 827 145794193 145793903 7.700000e-131 477.0
27 TraesCS6B01G054300 chr4B 96.220 291 11 0 537 827 659349385 659349095 7.700000e-131 477.0
28 TraesCS6B01G054300 chr4B 98.089 157 3 0 2908 3064 31285158 31285314 1.080000e-69 274.0
29 TraesCS6B01G054300 chr2B 98.742 159 2 0 2908 3066 783936390 783936232 1.800000e-72 283.0
30 TraesCS6B01G054300 chr2B 98.726 157 2 0 2908 3064 783873461 783873305 2.330000e-71 279.0
31 TraesCS6B01G054300 chr2B 98.089 157 3 0 2908 3064 480916724 480916880 1.080000e-69 274.0
32 TraesCS6B01G054300 chr4D 98.101 158 3 0 2907 3064 394485804 394485961 3.020000e-70 276.0
33 TraesCS6B01G054300 chr1D 95.556 45 1 1 1 44 355095319 355095275 1.530000e-08 71.3
34 TraesCS6B01G054300 chr1B 95.349 43 2 0 1 43 476928555 476928513 5.490000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G054300 chr6B 34683209 34686279 3070 True 1935.733333 5672 100.000000 1 3071 3 chr6B.!!$R3 3070
1 TraesCS6B01G054300 chr6B 34340164 34341484 1320 True 1002.000000 1002 80.614000 881 2197 1 chr6B.!!$R1 1316
2 TraesCS6B01G054300 chr6B 35528073 35529359 1286 True 953.000000 953 80.368000 912 2193 1 chr6B.!!$R2 1281
3 TraesCS6B01G054300 chr6A 20338059 20340634 2575 True 1061.033333 2470 91.461333 1 2900 3 chr6A.!!$R3 2899
4 TraesCS6B01G054300 chr6A 20309219 20310455 1236 True 1000.000000 1000 81.535000 966 2197 1 chr6A.!!$R1 1231
5 TraesCS6B01G054300 chr6A 20521076 20522361 1285 True 957.000000 957 80.383000 907 2193 1 chr6A.!!$R2 1286
6 TraesCS6B01G054300 chr6D 20310955 20312275 1320 True 1035.000000 1035 81.049000 881 2197 1 chr6D.!!$R1 1316
7 TraesCS6B01G054300 chr6D 20601336 20602623 1287 True 948.000000 948 80.200000 907 2193 1 chr6D.!!$R2 1286
8 TraesCS6B01G054300 chrUn 273854757 273856077 1320 False 1018.000000 1018 80.824000 881 2197 1 chrUn.!!$F1 1316
9 TraesCS6B01G054300 chr7D 632405321 632406530 1209 True 837.000000 837 79.460000 893 2094 1 chr7D.!!$R1 1201
10 TraesCS6B01G054300 chr7B 744569563 744570691 1128 True 765.000000 765 79.174000 956 2076 1 chr7B.!!$R2 1120

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
599 618 0.035152 TCAAATCCTGGTGCTCGCAT 60.035 50.0 0.00 0.00 0.0 4.73 F
861 880 0.036105 ACTTGCCATCTGATGACGCA 60.036 50.0 18.92 16.62 0.0 5.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1503 1533 0.033208 TGGAATTGATGCCCTCCACC 60.033 55.0 0.00 0.0 32.97 4.61 R
2533 2613 0.036105 TGAGATGCACCATCGCTGTT 60.036 50.0 9.67 0.0 44.67 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 6.238648 GCATGCCTTATTAGTGGATACGTTTT 60.239 38.462 6.36 0.00 42.51 2.43
45 46 7.148373 TGCCTTATTAGTGGATACGTTTTTCAC 60.148 37.037 0.00 0.00 42.51 3.18
52 53 9.926158 TTAGTGGATACGTTTTTCACTATGTTA 57.074 29.630 16.00 3.63 39.63 2.41
57 58 9.550811 GGATACGTTTTTCACTATGTTAAAAGG 57.449 33.333 0.00 0.00 33.79 3.11
243 244 8.019669 CACTATGTTCAAAGGAAACTCATGAAG 58.980 37.037 0.00 0.00 42.98 3.02
272 274 9.665264 GTTTATTTTACTTCCATATACAGCAGC 57.335 33.333 0.00 0.00 0.00 5.25
293 295 2.679837 CCACGCATGGCTTCCATATATC 59.320 50.000 0.00 0.00 43.15 1.63
296 298 3.943381 ACGCATGGCTTCCATATATCATG 59.057 43.478 0.00 5.77 43.15 3.07
297 299 3.943381 CGCATGGCTTCCATATATCATGT 59.057 43.478 10.05 0.00 43.15 3.21
298 300 4.201881 CGCATGGCTTCCATATATCATGTG 60.202 45.833 10.05 9.15 43.15 3.21
302 310 7.094248 GCATGGCTTCCATATATCATGTGTTAA 60.094 37.037 10.05 0.00 43.15 2.01
373 381 1.986882 AGGCATGCCTTATTAGTGGC 58.013 50.000 34.07 3.53 45.70 5.01
379 387 9.999040 TAGGCATGCCTTATTAGTGGCTAACAC 62.999 44.444 42.49 6.84 45.70 3.32
394 402 7.859325 TGGCTAACACATTTCCTTTATCTAC 57.141 36.000 0.00 0.00 0.00 2.59
428 436 6.515272 TTTTCCAAGAGATATGAACCTTGC 57.485 37.500 0.00 0.00 35.83 4.01
429 437 4.842531 TCCAAGAGATATGAACCTTGCA 57.157 40.909 0.00 0.00 35.83 4.08
430 438 4.517285 TCCAAGAGATATGAACCTTGCAC 58.483 43.478 0.00 0.00 35.83 4.57
431 439 4.225942 TCCAAGAGATATGAACCTTGCACT 59.774 41.667 0.00 0.00 35.83 4.40
435 443 7.933577 CCAAGAGATATGAACCTTGCACTAATA 59.066 37.037 0.00 0.00 35.83 0.98
436 444 9.499479 CAAGAGATATGAACCTTGCACTAATAT 57.501 33.333 0.00 0.00 31.11 1.28
438 446 9.499479 AGAGATATGAACCTTGCACTAATATTG 57.501 33.333 0.00 0.00 0.00 1.90
439 447 9.277783 GAGATATGAACCTTGCACTAATATTGT 57.722 33.333 0.00 0.00 0.00 2.71
445 453 9.899661 TGAACCTTGCACTAATATTGTATAAGT 57.100 29.630 0.00 0.00 0.00 2.24
540 559 8.567285 AAGTTGTTCTCCATATCTTTAGTTGG 57.433 34.615 0.00 0.00 0.00 3.77
541 560 7.918076 AGTTGTTCTCCATATCTTTAGTTGGA 58.082 34.615 0.00 0.00 36.81 3.53
542 561 8.552296 AGTTGTTCTCCATATCTTTAGTTGGAT 58.448 33.333 0.00 0.00 37.61 3.41
543 562 8.616076 GTTGTTCTCCATATCTTTAGTTGGATG 58.384 37.037 0.00 0.00 37.61 3.51
544 563 7.282585 TGTTCTCCATATCTTTAGTTGGATGG 58.717 38.462 0.00 0.00 37.61 3.51
545 564 7.092444 TGTTCTCCATATCTTTAGTTGGATGGT 60.092 37.037 0.00 0.00 37.61 3.55
546 565 7.451731 TCTCCATATCTTTAGTTGGATGGTT 57.548 36.000 0.00 0.00 37.61 3.67
547 566 8.561536 TCTCCATATCTTTAGTTGGATGGTTA 57.438 34.615 0.00 0.00 37.61 2.85
548 567 8.651389 TCTCCATATCTTTAGTTGGATGGTTAG 58.349 37.037 0.00 0.00 37.61 2.34
549 568 8.561536 TCCATATCTTTAGTTGGATGGTTAGA 57.438 34.615 0.00 0.00 36.15 2.10
550 569 8.651389 TCCATATCTTTAGTTGGATGGTTAGAG 58.349 37.037 0.00 0.00 36.15 2.43
551 570 7.880195 CCATATCTTTAGTTGGATGGTTAGAGG 59.120 40.741 0.00 0.00 31.15 3.69
552 571 5.693769 TCTTTAGTTGGATGGTTAGAGGG 57.306 43.478 0.00 0.00 0.00 4.30
553 572 5.347124 TCTTTAGTTGGATGGTTAGAGGGA 58.653 41.667 0.00 0.00 0.00 4.20
554 573 5.189145 TCTTTAGTTGGATGGTTAGAGGGAC 59.811 44.000 0.00 0.00 0.00 4.46
556 575 2.840651 AGTTGGATGGTTAGAGGGACTG 59.159 50.000 0.00 0.00 41.55 3.51
557 576 2.572104 GTTGGATGGTTAGAGGGACTGT 59.428 50.000 0.00 0.00 41.55 3.55
558 577 2.187958 TGGATGGTTAGAGGGACTGTG 58.812 52.381 0.00 0.00 41.55 3.66
559 578 1.486726 GGATGGTTAGAGGGACTGTGG 59.513 57.143 0.00 0.00 41.55 4.17
560 579 2.188817 GATGGTTAGAGGGACTGTGGT 58.811 52.381 0.00 0.00 41.55 4.16
561 580 3.371965 GATGGTTAGAGGGACTGTGGTA 58.628 50.000 0.00 0.00 41.55 3.25
562 581 3.484953 TGGTTAGAGGGACTGTGGTAT 57.515 47.619 0.00 0.00 41.55 2.73
563 582 3.371965 TGGTTAGAGGGACTGTGGTATC 58.628 50.000 0.00 0.00 41.55 2.24
564 583 2.699321 GGTTAGAGGGACTGTGGTATCC 59.301 54.545 0.00 0.00 41.55 2.59
569 588 1.527370 GGACTGTGGTATCCCCAGC 59.473 63.158 0.00 0.00 46.45 4.85
570 589 1.527370 GACTGTGGTATCCCCAGCC 59.473 63.158 0.00 0.00 46.45 4.85
571 590 1.984288 GACTGTGGTATCCCCAGCCC 61.984 65.000 0.00 0.00 46.45 5.19
572 591 2.000701 CTGTGGTATCCCCAGCCCA 61.001 63.158 0.00 0.00 46.45 5.36
573 592 2.270874 CTGTGGTATCCCCAGCCCAC 62.271 65.000 0.00 0.00 46.45 4.61
574 593 2.694616 TGGTATCCCCAGCCCACC 60.695 66.667 0.00 0.00 38.72 4.61
575 594 2.694616 GGTATCCCCAGCCCACCA 60.695 66.667 0.00 0.00 0.00 4.17
576 595 2.757124 GGTATCCCCAGCCCACCAG 61.757 68.421 0.00 0.00 0.00 4.00
577 596 2.368192 TATCCCCAGCCCACCAGG 60.368 66.667 0.00 0.00 39.47 4.45
593 612 3.363787 AGGGTTCAAATCCTGGTGC 57.636 52.632 0.00 0.00 38.36 5.01
594 613 0.779997 AGGGTTCAAATCCTGGTGCT 59.220 50.000 0.00 0.00 38.36 4.40
595 614 1.177401 GGGTTCAAATCCTGGTGCTC 58.823 55.000 0.00 0.00 0.00 4.26
596 615 0.804989 GGTTCAAATCCTGGTGCTCG 59.195 55.000 0.00 0.00 0.00 5.03
597 616 0.169009 GTTCAAATCCTGGTGCTCGC 59.831 55.000 0.00 0.00 0.00 5.03
598 617 0.250684 TTCAAATCCTGGTGCTCGCA 60.251 50.000 0.00 0.00 0.00 5.10
599 618 0.035152 TCAAATCCTGGTGCTCGCAT 60.035 50.000 0.00 0.00 0.00 4.73
600 619 0.813184 CAAATCCTGGTGCTCGCATT 59.187 50.000 0.00 0.00 0.00 3.56
601 620 1.203052 CAAATCCTGGTGCTCGCATTT 59.797 47.619 0.00 0.00 0.00 2.32
602 621 2.418368 AATCCTGGTGCTCGCATTTA 57.582 45.000 0.00 0.00 0.00 1.40
603 622 2.645838 ATCCTGGTGCTCGCATTTAT 57.354 45.000 0.00 0.00 0.00 1.40
604 623 2.418368 TCCTGGTGCTCGCATTTATT 57.582 45.000 0.00 0.00 0.00 1.40
605 624 2.722094 TCCTGGTGCTCGCATTTATTT 58.278 42.857 0.00 0.00 0.00 1.40
606 625 2.682856 TCCTGGTGCTCGCATTTATTTC 59.317 45.455 0.00 0.00 0.00 2.17
607 626 2.684881 CCTGGTGCTCGCATTTATTTCT 59.315 45.455 0.00 0.00 0.00 2.52
608 627 3.488047 CCTGGTGCTCGCATTTATTTCTG 60.488 47.826 0.00 0.00 0.00 3.02
609 628 3.342719 TGGTGCTCGCATTTATTTCTGA 58.657 40.909 0.00 0.00 0.00 3.27
610 629 3.755905 TGGTGCTCGCATTTATTTCTGAA 59.244 39.130 0.00 0.00 0.00 3.02
611 630 4.398988 TGGTGCTCGCATTTATTTCTGAAT 59.601 37.500 0.00 0.00 0.00 2.57
612 631 5.105797 TGGTGCTCGCATTTATTTCTGAATT 60.106 36.000 0.00 0.00 0.00 2.17
613 632 5.807011 GGTGCTCGCATTTATTTCTGAATTT 59.193 36.000 0.00 0.00 0.00 1.82
614 633 6.972328 GGTGCTCGCATTTATTTCTGAATTTA 59.028 34.615 0.00 0.00 0.00 1.40
615 634 7.649306 GGTGCTCGCATTTATTTCTGAATTTAT 59.351 33.333 0.00 0.00 0.00 1.40
616 635 9.023967 GTGCTCGCATTTATTTCTGAATTTATT 57.976 29.630 0.00 0.00 0.00 1.40
617 636 9.585099 TGCTCGCATTTATTTCTGAATTTATTT 57.415 25.926 0.00 0.00 0.00 1.40
630 649 5.901552 TGAATTTATTTCAGGATTTCCGGC 58.098 37.500 0.00 0.00 39.44 6.13
631 650 4.568152 ATTTATTTCAGGATTTCCGGCG 57.432 40.909 0.00 0.00 42.08 6.46
632 651 2.992124 TATTTCAGGATTTCCGGCGA 57.008 45.000 9.30 0.00 42.08 5.54
633 652 2.348411 ATTTCAGGATTTCCGGCGAT 57.652 45.000 9.30 0.00 42.08 4.58
634 653 1.378531 TTTCAGGATTTCCGGCGATG 58.621 50.000 9.30 0.00 42.08 3.84
635 654 1.095228 TTCAGGATTTCCGGCGATGC 61.095 55.000 9.30 0.00 42.08 3.91
636 655 2.588877 AGGATTTCCGGCGATGCG 60.589 61.111 9.30 0.00 42.08 4.73
647 666 2.711311 CGATGCGCATTCAGTGGG 59.289 61.111 26.12 4.47 43.21 4.61
648 667 1.815003 CGATGCGCATTCAGTGGGA 60.815 57.895 26.12 0.00 43.02 4.37
649 668 1.769098 CGATGCGCATTCAGTGGGAG 61.769 60.000 26.12 4.12 43.02 4.30
650 669 1.442526 GATGCGCATTCAGTGGGAGG 61.443 60.000 26.12 0.00 43.02 4.30
651 670 1.913951 ATGCGCATTCAGTGGGAGGA 61.914 55.000 19.28 0.00 43.02 3.71
652 671 1.817099 GCGCATTCAGTGGGAGGAG 60.817 63.158 0.30 0.00 43.02 3.69
653 672 1.900351 CGCATTCAGTGGGAGGAGA 59.100 57.895 0.00 0.00 43.02 3.71
654 673 0.460987 CGCATTCAGTGGGAGGAGAC 60.461 60.000 0.00 0.00 43.02 3.36
655 674 0.460987 GCATTCAGTGGGAGGAGACG 60.461 60.000 0.00 0.00 0.00 4.18
656 675 0.898320 CATTCAGTGGGAGGAGACGT 59.102 55.000 0.00 0.00 0.00 4.34
657 676 1.276421 CATTCAGTGGGAGGAGACGTT 59.724 52.381 0.00 0.00 0.00 3.99
658 677 0.966920 TTCAGTGGGAGGAGACGTTC 59.033 55.000 0.00 0.00 0.00 3.95
681 700 3.601981 GACGACGAGGCGCTTATG 58.398 61.111 7.64 0.00 33.86 1.90
682 701 1.944676 GACGACGAGGCGCTTATGG 60.945 63.158 7.64 0.00 33.86 2.74
683 702 2.104331 CGACGAGGCGCTTATGGT 59.896 61.111 7.64 0.73 0.00 3.55
684 703 2.230940 CGACGAGGCGCTTATGGTG 61.231 63.158 7.64 0.00 0.00 4.17
685 704 1.141019 GACGAGGCGCTTATGGTGA 59.859 57.895 7.64 0.00 0.00 4.02
686 705 1.146358 GACGAGGCGCTTATGGTGAC 61.146 60.000 7.64 0.00 0.00 3.67
688 707 0.460284 CGAGGCGCTTATGGTGACTT 60.460 55.000 7.64 0.00 44.99 3.01
689 708 1.291132 GAGGCGCTTATGGTGACTTC 58.709 55.000 7.64 0.00 44.99 3.01
690 709 0.460284 AGGCGCTTATGGTGACTTCG 60.460 55.000 7.64 0.00 41.79 3.79
691 710 0.739813 GGCGCTTATGGTGACTTCGT 60.740 55.000 7.64 0.00 0.00 3.85
692 711 1.470285 GGCGCTTATGGTGACTTCGTA 60.470 52.381 7.64 0.00 0.00 3.43
693 712 2.264813 GCGCTTATGGTGACTTCGTAA 58.735 47.619 0.00 0.00 0.00 3.18
694 713 2.669434 GCGCTTATGGTGACTTCGTAAA 59.331 45.455 0.00 0.00 0.00 2.01
695 714 3.308866 GCGCTTATGGTGACTTCGTAAAT 59.691 43.478 0.00 0.00 0.00 1.40
696 715 4.550255 GCGCTTATGGTGACTTCGTAAATC 60.550 45.833 0.00 0.00 0.00 2.17
697 716 4.804139 CGCTTATGGTGACTTCGTAAATCT 59.196 41.667 0.00 0.00 0.00 2.40
698 717 5.051641 CGCTTATGGTGACTTCGTAAATCTC 60.052 44.000 0.00 0.00 0.00 2.75
699 718 5.810587 GCTTATGGTGACTTCGTAAATCTCA 59.189 40.000 0.00 0.00 0.00 3.27
700 719 6.312918 GCTTATGGTGACTTCGTAAATCTCAA 59.687 38.462 0.00 0.00 0.00 3.02
701 720 7.464710 GCTTATGGTGACTTCGTAAATCTCAAG 60.465 40.741 0.00 0.00 0.00 3.02
702 721 5.462530 TGGTGACTTCGTAAATCTCAAGA 57.537 39.130 0.00 0.00 0.00 3.02
703 722 6.037786 TGGTGACTTCGTAAATCTCAAGAT 57.962 37.500 0.00 0.00 36.07 2.40
704 723 5.869344 TGGTGACTTCGTAAATCTCAAGATG 59.131 40.000 0.00 0.00 34.49 2.90
705 724 6.100004 GGTGACTTCGTAAATCTCAAGATGA 58.900 40.000 0.00 0.00 34.49 2.92
706 725 6.758886 GGTGACTTCGTAAATCTCAAGATGAT 59.241 38.462 0.00 0.00 34.49 2.45
707 726 7.921214 GGTGACTTCGTAAATCTCAAGATGATA 59.079 37.037 0.00 0.00 34.49 2.15
708 727 9.469807 GTGACTTCGTAAATCTCAAGATGATAT 57.530 33.333 0.00 0.00 34.49 1.63
709 728 9.468532 TGACTTCGTAAATCTCAAGATGATATG 57.531 33.333 0.00 0.00 34.49 1.78
710 729 8.304202 ACTTCGTAAATCTCAAGATGATATGC 57.696 34.615 0.00 0.00 34.49 3.14
711 730 7.386299 ACTTCGTAAATCTCAAGATGATATGCC 59.614 37.037 0.00 0.00 34.49 4.40
712 731 5.863935 TCGTAAATCTCAAGATGATATGCCG 59.136 40.000 0.00 0.00 34.49 5.69
713 732 5.062683 CGTAAATCTCAAGATGATATGCCGG 59.937 44.000 0.00 0.00 34.49 6.13
714 733 2.462456 TCTCAAGATGATATGCCGGC 57.538 50.000 22.73 22.73 0.00 6.13
715 734 1.973515 TCTCAAGATGATATGCCGGCT 59.026 47.619 29.70 15.76 0.00 5.52
716 735 2.028658 TCTCAAGATGATATGCCGGCTC 60.029 50.000 29.70 17.89 0.00 4.70
717 736 1.693606 TCAAGATGATATGCCGGCTCA 59.306 47.619 29.70 23.34 0.00 4.26
718 737 2.074576 CAAGATGATATGCCGGCTCAG 58.925 52.381 29.70 7.35 0.00 3.35
719 738 1.346062 AGATGATATGCCGGCTCAGT 58.654 50.000 29.70 13.44 0.00 3.41
720 739 1.274728 AGATGATATGCCGGCTCAGTC 59.725 52.381 29.70 19.55 0.00 3.51
721 740 1.274728 GATGATATGCCGGCTCAGTCT 59.725 52.381 29.70 8.26 0.00 3.24
722 741 1.123077 TGATATGCCGGCTCAGTCTT 58.877 50.000 29.70 5.10 0.00 3.01
723 742 1.486310 TGATATGCCGGCTCAGTCTTT 59.514 47.619 29.70 3.35 0.00 2.52
724 743 2.139118 GATATGCCGGCTCAGTCTTTC 58.861 52.381 29.70 9.22 0.00 2.62
725 744 0.179111 TATGCCGGCTCAGTCTTTCG 60.179 55.000 29.70 0.00 0.00 3.46
726 745 2.815647 GCCGGCTCAGTCTTTCGG 60.816 66.667 22.15 0.00 43.13 4.30
727 746 2.970639 CCGGCTCAGTCTTTCGGA 59.029 61.111 0.00 0.00 42.94 4.55
728 747 1.153745 CCGGCTCAGTCTTTCGGAG 60.154 63.158 0.00 0.00 42.94 4.63
729 748 1.595993 CCGGCTCAGTCTTTCGGAGA 61.596 60.000 0.00 0.00 42.94 3.71
730 749 0.457851 CGGCTCAGTCTTTCGGAGAT 59.542 55.000 0.00 0.00 40.01 2.75
731 750 1.800655 CGGCTCAGTCTTTCGGAGATG 60.801 57.143 0.00 0.00 40.01 2.90
732 751 1.285578 GCTCAGTCTTTCGGAGATGC 58.714 55.000 0.00 0.00 40.01 3.91
733 752 1.134848 GCTCAGTCTTTCGGAGATGCT 60.135 52.381 0.00 0.00 40.01 3.79
734 753 2.808244 CTCAGTCTTTCGGAGATGCTC 58.192 52.381 0.00 0.00 40.01 4.26
735 754 2.165234 CTCAGTCTTTCGGAGATGCTCA 59.835 50.000 0.00 0.00 40.01 4.26
736 755 2.762887 TCAGTCTTTCGGAGATGCTCAT 59.237 45.455 0.00 0.00 36.61 2.90
737 756 3.954258 TCAGTCTTTCGGAGATGCTCATA 59.046 43.478 0.00 0.00 36.61 2.15
738 757 4.037327 TCAGTCTTTCGGAGATGCTCATAG 59.963 45.833 0.00 0.00 36.61 2.23
739 758 3.320541 AGTCTTTCGGAGATGCTCATAGG 59.679 47.826 0.00 0.00 36.61 2.57
740 759 2.630098 TCTTTCGGAGATGCTCATAGGG 59.370 50.000 0.00 0.00 35.04 3.53
741 760 1.342074 TTCGGAGATGCTCATAGGGG 58.658 55.000 0.00 0.00 35.04 4.79
742 761 0.188587 TCGGAGATGCTCATAGGGGT 59.811 55.000 0.00 0.00 31.08 4.95
743 762 1.427753 TCGGAGATGCTCATAGGGGTA 59.572 52.381 0.00 0.00 31.08 3.69
744 763 1.821753 CGGAGATGCTCATAGGGGTAG 59.178 57.143 0.00 0.00 31.08 3.18
745 764 2.183679 GGAGATGCTCATAGGGGTAGG 58.816 57.143 0.00 0.00 31.08 3.18
746 765 2.183679 GAGATGCTCATAGGGGTAGGG 58.816 57.143 0.00 0.00 0.00 3.53
747 766 1.509961 AGATGCTCATAGGGGTAGGGT 59.490 52.381 0.00 0.00 0.00 4.34
748 767 1.625818 GATGCTCATAGGGGTAGGGTG 59.374 57.143 0.00 0.00 0.00 4.61
749 768 0.341961 TGCTCATAGGGGTAGGGTGT 59.658 55.000 0.00 0.00 0.00 4.16
750 769 0.759346 GCTCATAGGGGTAGGGTGTG 59.241 60.000 0.00 0.00 0.00 3.82
751 770 0.759346 CTCATAGGGGTAGGGTGTGC 59.241 60.000 0.00 0.00 0.00 4.57
752 771 1.046472 TCATAGGGGTAGGGTGTGCG 61.046 60.000 0.00 0.00 0.00 5.34
753 772 1.002533 ATAGGGGTAGGGTGTGCGT 59.997 57.895 0.00 0.00 0.00 5.24
754 773 1.335132 ATAGGGGTAGGGTGTGCGTG 61.335 60.000 0.00 0.00 0.00 5.34
755 774 2.735151 TAGGGGTAGGGTGTGCGTGT 62.735 60.000 0.00 0.00 0.00 4.49
756 775 2.358247 GGGTAGGGTGTGCGTGTG 60.358 66.667 0.00 0.00 0.00 3.82
757 776 2.424302 GGTAGGGTGTGCGTGTGT 59.576 61.111 0.00 0.00 0.00 3.72
758 777 1.959226 GGTAGGGTGTGCGTGTGTG 60.959 63.158 0.00 0.00 0.00 3.82
759 778 2.280524 TAGGGTGTGCGTGTGTGC 60.281 61.111 0.00 0.00 0.00 4.57
762 781 3.871574 GGTGTGCGTGTGTGCGTT 61.872 61.111 0.00 0.00 37.81 4.84
763 782 2.350760 GTGTGCGTGTGTGCGTTC 60.351 61.111 0.00 0.00 37.81 3.95
764 783 2.815647 TGTGCGTGTGTGCGTTCA 60.816 55.556 0.00 0.00 37.81 3.18
765 784 2.176926 TGTGCGTGTGTGCGTTCAT 61.177 52.632 0.00 0.00 37.81 2.57
766 785 0.876342 TGTGCGTGTGTGCGTTCATA 60.876 50.000 0.00 0.00 37.81 2.15
767 786 0.179250 GTGCGTGTGTGCGTTCATAG 60.179 55.000 0.00 0.00 37.81 2.23
768 787 1.288419 TGCGTGTGTGCGTTCATAGG 61.288 55.000 0.00 0.00 37.81 2.57
769 788 1.966493 GCGTGTGTGCGTTCATAGGG 61.966 60.000 0.00 0.00 0.00 3.53
770 789 0.389296 CGTGTGTGCGTTCATAGGGA 60.389 55.000 0.00 0.00 0.00 4.20
771 790 1.739035 CGTGTGTGCGTTCATAGGGAT 60.739 52.381 0.00 0.00 0.00 3.85
772 791 2.480587 CGTGTGTGCGTTCATAGGGATA 60.481 50.000 0.00 0.00 0.00 2.59
773 792 3.527533 GTGTGTGCGTTCATAGGGATAA 58.472 45.455 0.00 0.00 0.00 1.75
774 793 3.555956 GTGTGTGCGTTCATAGGGATAAG 59.444 47.826 0.00 0.00 0.00 1.73
775 794 3.196901 TGTGTGCGTTCATAGGGATAAGT 59.803 43.478 0.00 0.00 0.00 2.24
776 795 3.555956 GTGTGCGTTCATAGGGATAAGTG 59.444 47.826 0.00 0.00 0.00 3.16
777 796 3.196901 TGTGCGTTCATAGGGATAAGTGT 59.803 43.478 0.00 0.00 0.00 3.55
778 797 4.403113 TGTGCGTTCATAGGGATAAGTGTA 59.597 41.667 0.00 0.00 0.00 2.90
779 798 5.069914 TGTGCGTTCATAGGGATAAGTGTAT 59.930 40.000 0.00 0.00 0.00 2.29
780 799 5.405571 GTGCGTTCATAGGGATAAGTGTATG 59.594 44.000 0.00 0.00 0.00 2.39
781 800 4.389077 GCGTTCATAGGGATAAGTGTATGC 59.611 45.833 0.00 0.00 0.00 3.14
782 801 4.621460 CGTTCATAGGGATAAGTGTATGCG 59.379 45.833 0.00 0.00 0.00 4.73
783 802 4.188247 TCATAGGGATAAGTGTATGCGC 57.812 45.455 0.00 0.00 0.00 6.09
784 803 2.717580 TAGGGATAAGTGTATGCGCG 57.282 50.000 0.00 0.00 0.00 6.86
785 804 0.750850 AGGGATAAGTGTATGCGCGT 59.249 50.000 8.43 7.55 0.00 6.01
786 805 0.859232 GGGATAAGTGTATGCGCGTG 59.141 55.000 13.61 0.00 0.00 5.34
787 806 1.567504 GGATAAGTGTATGCGCGTGT 58.432 50.000 13.61 0.00 0.00 4.49
788 807 2.544277 GGGATAAGTGTATGCGCGTGTA 60.544 50.000 13.61 0.00 0.00 2.90
789 808 3.314553 GGATAAGTGTATGCGCGTGTAT 58.685 45.455 13.61 4.63 0.00 2.29
790 809 4.478699 GGATAAGTGTATGCGCGTGTATA 58.521 43.478 13.61 2.40 0.00 1.47
791 810 5.100259 GGATAAGTGTATGCGCGTGTATAT 58.900 41.667 13.61 3.84 0.00 0.86
792 811 5.004440 GGATAAGTGTATGCGCGTGTATATG 59.996 44.000 13.61 0.00 0.00 1.78
793 812 3.636282 AGTGTATGCGCGTGTATATGA 57.364 42.857 13.61 0.00 0.00 2.15
794 813 3.565516 AGTGTATGCGCGTGTATATGAG 58.434 45.455 13.61 0.00 0.00 2.90
795 814 2.090658 GTGTATGCGCGTGTATATGAGC 59.909 50.000 13.61 0.41 38.85 4.26
798 817 4.228451 CGCGTGTATATGAGCGCT 57.772 55.556 11.27 11.27 46.56 5.92
799 818 2.506544 CGCGTGTATATGAGCGCTT 58.493 52.632 13.26 0.00 46.56 4.68
800 819 0.159554 CGCGTGTATATGAGCGCTTG 59.840 55.000 13.26 0.00 46.56 4.01
801 820 1.209128 GCGTGTATATGAGCGCTTGT 58.791 50.000 13.26 5.98 45.48 3.16
802 821 1.071239 GCGTGTATATGAGCGCTTGTG 60.071 52.381 13.26 0.00 45.48 3.33
803 822 2.193447 CGTGTATATGAGCGCTTGTGT 58.807 47.619 13.26 4.27 0.00 3.72
804 823 2.216488 CGTGTATATGAGCGCTTGTGTC 59.784 50.000 13.26 0.00 0.00 3.67
805 824 3.448686 GTGTATATGAGCGCTTGTGTCT 58.551 45.455 13.26 0.00 0.00 3.41
806 825 3.243877 GTGTATATGAGCGCTTGTGTCTG 59.756 47.826 13.26 0.00 0.00 3.51
807 826 2.680312 ATATGAGCGCTTGTGTCTGT 57.320 45.000 13.26 0.00 0.00 3.41
808 827 3.801114 ATATGAGCGCTTGTGTCTGTA 57.199 42.857 13.26 0.00 0.00 2.74
809 828 1.714794 ATGAGCGCTTGTGTCTGTAC 58.285 50.000 13.26 0.00 0.00 2.90
810 829 0.673985 TGAGCGCTTGTGTCTGTACT 59.326 50.000 13.26 0.00 0.00 2.73
811 830 1.063806 GAGCGCTTGTGTCTGTACTG 58.936 55.000 13.26 0.00 0.00 2.74
812 831 0.673985 AGCGCTTGTGTCTGTACTGA 59.326 50.000 2.64 0.00 0.00 3.41
813 832 1.273606 AGCGCTTGTGTCTGTACTGAT 59.726 47.619 2.64 0.00 0.00 2.90
814 833 1.391485 GCGCTTGTGTCTGTACTGATG 59.609 52.381 0.00 0.00 0.00 3.07
815 834 2.677199 CGCTTGTGTCTGTACTGATGT 58.323 47.619 5.69 0.00 0.00 3.06
816 835 3.059884 CGCTTGTGTCTGTACTGATGTT 58.940 45.455 5.69 0.00 0.00 2.71
817 836 3.121944 CGCTTGTGTCTGTACTGATGTTC 59.878 47.826 5.69 0.00 0.00 3.18
818 837 4.058124 GCTTGTGTCTGTACTGATGTTCA 58.942 43.478 5.69 0.00 0.00 3.18
819 838 4.511454 GCTTGTGTCTGTACTGATGTTCAA 59.489 41.667 5.69 8.15 0.00 2.69
820 839 5.007626 GCTTGTGTCTGTACTGATGTTCAAA 59.992 40.000 5.69 0.00 0.00 2.69
821 840 6.458206 GCTTGTGTCTGTACTGATGTTCAAAA 60.458 38.462 5.69 0.61 0.00 2.44
822 841 6.993786 TGTGTCTGTACTGATGTTCAAAAA 57.006 33.333 5.69 0.00 0.00 1.94
861 880 0.036105 ACTTGCCATCTGATGACGCA 60.036 50.000 18.92 16.62 0.00 5.24
872 891 4.985413 TCTGATGACGCAAAATGGATTTC 58.015 39.130 0.00 0.00 0.00 2.17
1074 1101 1.134694 GCAATTGGCGAGTTCCGTC 59.865 57.895 7.72 0.00 44.47 4.79
1084 1111 1.403972 GAGTTCCGTCGACATCACGC 61.404 60.000 17.16 6.20 35.87 5.34
1097 1124 2.094757 ATCACGCACACGGACTTGGA 62.095 55.000 0.00 0.00 46.04 3.53
1241 1268 1.433053 TTCAACCAAGGTGACGCACG 61.433 55.000 0.00 0.00 34.83 5.34
1251 1278 1.300620 TGACGCACGCTACAAGCTT 60.301 52.632 0.00 0.00 39.60 3.74
1294 1324 0.248134 GACCGATGAAGAGGTCGACG 60.248 60.000 9.92 0.00 46.08 5.12
1295 1325 1.064296 CCGATGAAGAGGTCGACGG 59.936 63.158 9.92 0.00 40.11 4.79
1457 1487 0.653636 GCGGTGACAAACGTGAAGAA 59.346 50.000 0.00 0.00 0.00 2.52
1548 1578 0.535102 CCAGGAAGCTGGTGTCGTTT 60.535 55.000 0.00 0.00 39.56 3.60
1586 1616 2.622436 AGACTGCGATAAAGGAAGTGC 58.378 47.619 0.00 0.00 0.00 4.40
1594 1624 1.600023 TAAAGGAAGTGCCGGTTGTG 58.400 50.000 1.90 0.00 43.43 3.33
1605 1635 3.302344 GGTTGTGGTGGCGGCAAT 61.302 61.111 15.50 0.00 0.00 3.56
1634 1664 3.355378 TGGCTTTCAAGTACATGATGGG 58.645 45.455 0.00 0.00 0.00 4.00
1640 1670 0.618458 AAGTACATGATGGGCCACGT 59.382 50.000 9.28 6.67 0.00 4.49
1673 1703 0.179045 GAGGCCGACTACCCGTACTA 60.179 60.000 0.00 0.00 0.00 1.82
1749 1779 1.250328 TCGACGGCTTCAAAGAGGTA 58.750 50.000 0.00 0.00 0.00 3.08
1891 1921 0.896479 TCGGACCCACTCAATGACGA 60.896 55.000 0.00 0.00 0.00 4.20
2072 2114 5.178067 CGTCGTACCCAGTGAAAAATTAAGT 59.822 40.000 0.00 0.00 0.00 2.24
2076 2118 8.149647 TCGTACCCAGTGAAAAATTAAGTAAGA 58.850 33.333 0.00 0.00 0.00 2.10
2077 2119 8.776470 CGTACCCAGTGAAAAATTAAGTAAGAA 58.224 33.333 0.00 0.00 0.00 2.52
2085 2130 7.806487 GTGAAAAATTAAGTAAGAAAGACGGGG 59.194 37.037 0.00 0.00 0.00 5.73
2162 2213 6.811253 ACGTGTGTAACCATGTGATTAATT 57.189 33.333 0.00 0.00 33.41 1.40
2198 2249 8.228464 GCACACCTAGACTTACTATTGTTTTTC 58.772 37.037 0.00 0.00 29.98 2.29
2199 2250 9.490379 CACACCTAGACTTACTATTGTTTTTCT 57.510 33.333 0.00 0.00 29.98 2.52
2200 2251 9.708092 ACACCTAGACTTACTATTGTTTTTCTC 57.292 33.333 0.00 0.00 28.81 2.87
2202 2253 8.877195 ACCTAGACTTACTATTGTTTTTCTCCA 58.123 33.333 0.00 0.00 0.00 3.86
2227 2280 1.770294 TTTGAGGGGTGCGTCTTTTT 58.230 45.000 0.00 0.00 0.00 1.94
2276 2329 4.430423 CAACGTGCCGCTTCGCTC 62.430 66.667 0.00 0.00 0.00 5.03
2290 2343 4.504132 GCTCGGCGTCTTCTCATT 57.496 55.556 6.85 0.00 0.00 2.57
2291 2344 3.642901 GCTCGGCGTCTTCTCATTA 57.357 52.632 6.85 0.00 0.00 1.90
2292 2345 1.482278 GCTCGGCGTCTTCTCATTAG 58.518 55.000 6.85 0.00 0.00 1.73
2293 2346 1.482278 CTCGGCGTCTTCTCATTAGC 58.518 55.000 6.85 0.00 0.00 3.09
2294 2347 0.102481 TCGGCGTCTTCTCATTAGCC 59.898 55.000 6.85 0.00 41.03 3.93
2295 2348 2.594541 GGCGTCTTCTCATTAGCCG 58.405 57.895 0.00 0.00 34.94 5.52
2296 2349 1.491505 GGCGTCTTCTCATTAGCCGC 61.492 60.000 0.00 0.00 38.97 6.53
2297 2350 0.528684 GCGTCTTCTCATTAGCCGCT 60.529 55.000 0.00 0.00 36.94 5.52
2320 2373 7.465173 GCTGCTCCAAAAACTACTATTAACTC 58.535 38.462 0.00 0.00 0.00 3.01
2321 2374 7.119262 GCTGCTCCAAAAACTACTATTAACTCA 59.881 37.037 0.00 0.00 0.00 3.41
2322 2375 8.911918 TGCTCCAAAAACTACTATTAACTCAA 57.088 30.769 0.00 0.00 0.00 3.02
2323 2376 9.515226 TGCTCCAAAAACTACTATTAACTCAAT 57.485 29.630 0.00 0.00 0.00 2.57
2324 2377 9.989869 GCTCCAAAAACTACTATTAACTCAATC 57.010 33.333 0.00 0.00 0.00 2.67
2344 2397 8.830915 TCAATCAATTAACTGGGCCTTAATTA 57.169 30.769 18.03 10.53 33.79 1.40
2363 2443 1.392710 ATCGCCCGATTCGTCTCCTT 61.393 55.000 5.20 0.00 0.00 3.36
2369 2449 1.403780 CCGATTCGTCTCCTTCCGTTT 60.404 52.381 5.20 0.00 0.00 3.60
2393 2473 1.203300 TCCTCCCAGATCACCTCAACA 60.203 52.381 0.00 0.00 0.00 3.33
2394 2474 1.842562 CCTCCCAGATCACCTCAACAT 59.157 52.381 0.00 0.00 0.00 2.71
2401 2481 1.952296 GATCACCTCAACATCATGCCC 59.048 52.381 0.00 0.00 0.00 5.36
2403 2483 0.033796 CACCTCAACATCATGCCCCT 60.034 55.000 0.00 0.00 0.00 4.79
2439 2519 3.731547 CCTCCATCAGTGGCAGGA 58.268 61.111 0.00 0.00 45.63 3.86
2517 2597 1.981256 AGTTCCAAATTCGTGCAGGT 58.019 45.000 6.26 0.00 0.00 4.00
2519 2599 1.880027 GTTCCAAATTCGTGCAGGTCT 59.120 47.619 6.26 0.00 0.00 3.85
2520 2600 1.522668 TCCAAATTCGTGCAGGTCTG 58.477 50.000 6.26 0.00 0.00 3.51
2521 2601 1.071542 TCCAAATTCGTGCAGGTCTGA 59.928 47.619 6.26 0.00 0.00 3.27
2522 2602 1.466167 CCAAATTCGTGCAGGTCTGAG 59.534 52.381 6.26 0.00 0.00 3.35
2523 2603 2.416747 CAAATTCGTGCAGGTCTGAGA 58.583 47.619 6.26 0.00 0.00 3.27
2524 2604 3.005554 CAAATTCGTGCAGGTCTGAGAT 58.994 45.455 6.26 0.00 0.00 2.75
2525 2605 2.306341 ATTCGTGCAGGTCTGAGATG 57.694 50.000 6.26 0.00 0.00 2.90
2526 2606 0.247460 TTCGTGCAGGTCTGAGATGG 59.753 55.000 6.26 0.00 0.00 3.51
2527 2607 1.153489 CGTGCAGGTCTGAGATGGG 60.153 63.158 1.65 0.00 0.00 4.00
2528 2608 1.451028 GTGCAGGTCTGAGATGGGC 60.451 63.158 1.65 0.00 0.00 5.36
2529 2609 1.919816 TGCAGGTCTGAGATGGGCA 60.920 57.895 1.65 1.61 0.00 5.36
2530 2610 1.276859 TGCAGGTCTGAGATGGGCAT 61.277 55.000 1.65 0.00 0.00 4.40
2531 2611 0.818445 GCAGGTCTGAGATGGGCATG 60.818 60.000 1.65 0.00 0.00 4.06
2532 2612 0.545171 CAGGTCTGAGATGGGCATGT 59.455 55.000 0.00 0.00 0.00 3.21
2533 2613 1.764723 CAGGTCTGAGATGGGCATGTA 59.235 52.381 0.00 0.00 0.00 2.29
2534 2614 2.171237 CAGGTCTGAGATGGGCATGTAA 59.829 50.000 0.00 0.00 0.00 2.41
2535 2615 2.171448 AGGTCTGAGATGGGCATGTAAC 59.829 50.000 0.00 0.00 0.00 2.50
2536 2616 2.092968 GGTCTGAGATGGGCATGTAACA 60.093 50.000 0.00 0.00 0.00 2.41
2537 2617 3.201290 GTCTGAGATGGGCATGTAACAG 58.799 50.000 0.00 0.00 0.00 3.16
2538 2618 1.945394 CTGAGATGGGCATGTAACAGC 59.055 52.381 0.00 0.00 0.00 4.40
2539 2619 0.940126 GAGATGGGCATGTAACAGCG 59.060 55.000 0.00 0.00 0.00 5.18
2540 2620 0.541392 AGATGGGCATGTAACAGCGA 59.459 50.000 0.00 0.00 0.00 4.93
2544 2624 0.748005 GGGCATGTAACAGCGATGGT 60.748 55.000 5.32 0.00 0.00 3.55
2546 2626 0.248215 GCATGTAACAGCGATGGTGC 60.248 55.000 0.00 0.00 34.04 5.01
2549 2629 1.368641 TGTAACAGCGATGGTGCATC 58.631 50.000 5.07 0.00 37.50 3.91
2567 2647 3.001736 GCATCTCAGCATTCGTTTACCTC 59.998 47.826 0.00 0.00 0.00 3.85
2568 2648 4.437239 CATCTCAGCATTCGTTTACCTCT 58.563 43.478 0.00 0.00 0.00 3.69
2569 2649 3.849911 TCTCAGCATTCGTTTACCTCTG 58.150 45.455 0.00 0.00 0.00 3.35
2582 2662 2.871096 ACCTCTGGGCGAATTGTTTA 57.129 45.000 0.00 0.00 35.63 2.01
2585 2665 2.618709 CCTCTGGGCGAATTGTTTATCC 59.381 50.000 0.00 0.00 0.00 2.59
2606 2686 2.623416 CCTCTTCCAACTTGGTTTCACC 59.377 50.000 7.72 0.00 39.03 4.02
2612 2692 1.734388 AACTTGGTTTCACCCTGCGC 61.734 55.000 0.00 0.00 37.50 6.09
2626 2706 2.265739 GCGCCCTGTGTCAGATCA 59.734 61.111 0.00 0.00 32.44 2.92
2629 2709 0.873312 CGCCCTGTGTCAGATCATCG 60.873 60.000 0.00 0.00 32.44 3.84
2640 2720 5.460419 GTGTCAGATCATCGGTTTCAGTATC 59.540 44.000 0.00 0.00 0.00 2.24
2641 2721 5.360999 TGTCAGATCATCGGTTTCAGTATCT 59.639 40.000 0.00 0.00 0.00 1.98
2642 2722 5.689514 GTCAGATCATCGGTTTCAGTATCTG 59.310 44.000 0.00 0.00 39.97 2.90
2643 2723 4.447054 CAGATCATCGGTTTCAGTATCTGC 59.553 45.833 0.00 0.00 34.37 4.26
2644 2724 3.885724 TCATCGGTTTCAGTATCTGCA 57.114 42.857 0.00 0.00 0.00 4.41
2645 2725 4.406648 TCATCGGTTTCAGTATCTGCAT 57.593 40.909 0.00 0.00 0.00 3.96
2646 2726 4.122046 TCATCGGTTTCAGTATCTGCATG 58.878 43.478 0.00 0.00 0.00 4.06
2667 2748 3.181445 TGCCCCGTCTTGCTATTGATTAT 60.181 43.478 0.00 0.00 0.00 1.28
2671 2752 6.348540 GCCCCGTCTTGCTATTGATTATTTAG 60.349 42.308 0.00 0.00 0.00 1.85
2698 2780 3.467803 TGGGCAAAAATTTGGGTTAACG 58.532 40.909 7.89 0.00 38.57 3.18
2699 2781 3.118371 TGGGCAAAAATTTGGGTTAACGT 60.118 39.130 7.89 0.00 38.57 3.99
2701 2783 4.120589 GGCAAAAATTTGGGTTAACGTGA 58.879 39.130 7.89 0.00 38.57 4.35
2702 2784 4.752604 GGCAAAAATTTGGGTTAACGTGAT 59.247 37.500 7.89 0.00 38.57 3.06
2703 2785 5.333721 GGCAAAAATTTGGGTTAACGTGATG 60.334 40.000 7.89 0.00 38.57 3.07
2704 2786 5.463724 GCAAAAATTTGGGTTAACGTGATGA 59.536 36.000 7.89 0.00 38.57 2.92
2705 2787 6.147000 GCAAAAATTTGGGTTAACGTGATGAT 59.853 34.615 7.89 0.00 38.57 2.45
2707 2789 8.643752 CAAAAATTTGGGTTAACGTGATGATAC 58.356 33.333 0.00 0.00 34.59 2.24
2708 2790 6.445357 AATTTGGGTTAACGTGATGATACC 57.555 37.500 0.00 0.00 0.00 2.73
2709 2791 4.554960 TTGGGTTAACGTGATGATACCA 57.445 40.909 0.00 0.00 0.00 3.25
2710 2792 4.764050 TGGGTTAACGTGATGATACCAT 57.236 40.909 0.00 0.00 35.29 3.55
2711 2793 4.447290 TGGGTTAACGTGATGATACCATG 58.553 43.478 0.00 0.00 32.09 3.66
2714 2796 6.050432 GGGTTAACGTGATGATACCATGTTA 58.950 40.000 0.00 0.00 42.03 2.41
2715 2797 6.018507 GGGTTAACGTGATGATACCATGTTAC 60.019 42.308 0.00 0.00 42.36 2.50
2716 2798 6.018507 GGTTAACGTGATGATACCATGTTACC 60.019 42.308 0.00 0.00 42.36 2.85
2717 2799 4.067972 ACGTGATGATACCATGTTACCC 57.932 45.455 0.00 0.00 32.09 3.69
2755 2842 3.057315 CACCGTTCCAATCAAAAGCTCAT 60.057 43.478 0.00 0.00 0.00 2.90
2762 2849 7.041167 CGTTCCAATCAAAAGCTCATATATCCA 60.041 37.037 0.00 0.00 0.00 3.41
2782 2869 7.693969 ATCCAACTCTTGTTTCTCCTTATTG 57.306 36.000 0.00 0.00 33.52 1.90
2793 2880 9.651913 TTGTTTCTCCTTATTGCCAAATTATTC 57.348 29.630 0.00 0.00 0.00 1.75
2800 2887 7.986320 TCCTTATTGCCAAATTATTCATTGGTG 59.014 33.333 6.43 0.00 46.29 4.17
2815 2902 8.821686 ATTCATTGGTGGTAAGATTCAATACA 57.178 30.769 0.00 0.00 0.00 2.29
2820 2907 7.194112 TGGTGGTAAGATTCAATACATGAGA 57.806 36.000 0.00 0.00 39.77 3.27
2854 2941 8.821686 ATTCATTGGTGGTAAGATTCAATACA 57.178 30.769 0.00 0.00 0.00 2.29
2855 2942 8.821686 TTCATTGGTGGTAAGATTCAATACAT 57.178 30.769 0.00 0.00 0.00 2.29
2856 2943 8.224389 TCATTGGTGGTAAGATTCAATACATG 57.776 34.615 0.00 0.00 0.00 3.21
2857 2944 8.052141 TCATTGGTGGTAAGATTCAATACATGA 58.948 33.333 0.00 0.00 35.85 3.07
2858 2945 7.864108 TTGGTGGTAAGATTCAATACATGAG 57.136 36.000 0.00 0.00 39.77 2.90
2860 2947 6.069673 TGGTGGTAAGATTCAATACATGAGGT 60.070 38.462 0.00 0.00 39.77 3.85
2862 2949 7.012421 GGTGGTAAGATTCAATACATGAGGTTC 59.988 40.741 0.00 0.00 39.77 3.62
2863 2950 7.770897 GTGGTAAGATTCAATACATGAGGTTCT 59.229 37.037 0.00 0.00 39.77 3.01
2864 2951 8.328758 TGGTAAGATTCAATACATGAGGTTCTT 58.671 33.333 0.00 1.48 39.77 2.52
2907 2994 2.747855 CGAAAGGCCCCAGTCAGC 60.748 66.667 0.00 0.00 0.00 4.26
2908 2995 2.436109 GAAAGGCCCCAGTCAGCA 59.564 61.111 0.00 0.00 0.00 4.41
2909 2996 1.676967 GAAAGGCCCCAGTCAGCAG 60.677 63.158 0.00 0.00 0.00 4.24
2910 2997 3.215587 AAAGGCCCCAGTCAGCAGG 62.216 63.158 0.00 0.00 0.00 4.85
2935 3022 1.358046 GCTACGTACAGCTACCCGG 59.642 63.158 3.01 0.00 38.57 5.73
2936 3023 1.379642 GCTACGTACAGCTACCCGGT 61.380 60.000 0.00 0.00 38.57 5.28
2937 3024 0.379669 CTACGTACAGCTACCCGGTG 59.620 60.000 0.00 0.00 46.37 4.94
2942 3029 3.377656 CAGCTACCCGGTGTCACT 58.622 61.111 0.00 0.00 36.39 3.41
2943 3030 1.079819 CAGCTACCCGGTGTCACTG 60.080 63.158 4.68 4.68 36.39 3.66
2944 3031 2.264794 GCTACCCGGTGTCACTGG 59.735 66.667 22.31 22.31 44.36 4.00
2945 3032 2.264794 CTACCCGGTGTCACTGGC 59.735 66.667 23.63 0.00 43.40 4.85
2946 3033 2.524640 TACCCGGTGTCACTGGCA 60.525 61.111 23.63 11.61 43.40 4.92
2947 3034 2.781595 CTACCCGGTGTCACTGGCAC 62.782 65.000 23.63 5.11 43.40 5.01
2952 3039 4.250305 GTGTCACTGGCACCGGGT 62.250 66.667 6.32 0.00 0.00 5.28
2953 3040 3.936203 TGTCACTGGCACCGGGTC 61.936 66.667 6.32 0.00 0.00 4.46
2954 3041 4.699522 GTCACTGGCACCGGGTCC 62.700 72.222 6.32 6.88 0.00 4.46
2956 3043 4.263572 CACTGGCACCGGGTCCAA 62.264 66.667 16.29 0.00 30.98 3.53
2957 3044 3.256960 ACTGGCACCGGGTCCAAT 61.257 61.111 16.29 5.48 30.98 3.16
2958 3045 2.438434 CTGGCACCGGGTCCAATC 60.438 66.667 16.29 0.00 30.98 2.67
2959 3046 2.933287 TGGCACCGGGTCCAATCT 60.933 61.111 13.71 0.00 0.00 2.40
2960 3047 1.613928 TGGCACCGGGTCCAATCTA 60.614 57.895 13.71 0.00 0.00 1.98
2961 3048 1.153229 GGCACCGGGTCCAATCTAC 60.153 63.158 6.32 0.00 0.00 2.59
2962 3049 1.600107 GCACCGGGTCCAATCTACA 59.400 57.895 6.32 0.00 0.00 2.74
2963 3050 0.743345 GCACCGGGTCCAATCTACAC 60.743 60.000 6.32 0.00 0.00 2.90
2964 3051 0.902531 CACCGGGTCCAATCTACACT 59.097 55.000 6.32 0.00 0.00 3.55
2965 3052 1.278127 CACCGGGTCCAATCTACACTT 59.722 52.381 6.32 0.00 0.00 3.16
2966 3053 1.278127 ACCGGGTCCAATCTACACTTG 59.722 52.381 6.32 0.00 0.00 3.16
2967 3054 1.369625 CGGGTCCAATCTACACTTGC 58.630 55.000 0.00 0.00 0.00 4.01
2968 3055 1.066143 CGGGTCCAATCTACACTTGCT 60.066 52.381 0.00 0.00 0.00 3.91
2969 3056 2.615493 CGGGTCCAATCTACACTTGCTT 60.615 50.000 0.00 0.00 0.00 3.91
2970 3057 3.369052 CGGGTCCAATCTACACTTGCTTA 60.369 47.826 0.00 0.00 0.00 3.09
2971 3058 4.585879 GGGTCCAATCTACACTTGCTTAA 58.414 43.478 0.00 0.00 0.00 1.85
2972 3059 4.636206 GGGTCCAATCTACACTTGCTTAAG 59.364 45.833 0.00 0.00 0.00 1.85
2973 3060 5.488341 GGTCCAATCTACACTTGCTTAAGA 58.512 41.667 6.67 0.00 0.00 2.10
2974 3061 6.116126 GGTCCAATCTACACTTGCTTAAGAT 58.884 40.000 6.67 0.00 0.00 2.40
2975 3062 7.272978 GGTCCAATCTACACTTGCTTAAGATA 58.727 38.462 6.67 0.00 0.00 1.98
2976 3063 7.769044 GGTCCAATCTACACTTGCTTAAGATAA 59.231 37.037 6.67 0.00 0.00 1.75
2977 3064 9.331282 GTCCAATCTACACTTGCTTAAGATAAT 57.669 33.333 6.67 0.00 0.00 1.28
2978 3065 9.547753 TCCAATCTACACTTGCTTAAGATAATC 57.452 33.333 6.67 0.00 0.00 1.75
2979 3066 8.778358 CCAATCTACACTTGCTTAAGATAATCC 58.222 37.037 6.67 0.00 0.00 3.01
2980 3067 9.330063 CAATCTACACTTGCTTAAGATAATCCA 57.670 33.333 6.67 0.00 0.00 3.41
2983 3070 9.330063 TCTACACTTGCTTAAGATAATCCATTG 57.670 33.333 6.67 0.00 0.00 2.82
2984 3071 9.330063 CTACACTTGCTTAAGATAATCCATTGA 57.670 33.333 6.67 0.00 0.00 2.57
2985 3072 8.757982 ACACTTGCTTAAGATAATCCATTGAT 57.242 30.769 6.67 0.00 0.00 2.57
2986 3073 9.193806 ACACTTGCTTAAGATAATCCATTGATT 57.806 29.630 6.67 0.00 43.56 2.57
3000 3087 8.806429 AATCCATTGATTTAGTGTGTATGTCA 57.194 30.769 0.00 0.00 38.00 3.58
3001 3088 8.985315 ATCCATTGATTTAGTGTGTATGTCAT 57.015 30.769 0.00 0.00 0.00 3.06
3002 3089 8.806429 TCCATTGATTTAGTGTGTATGTCATT 57.194 30.769 0.00 0.00 0.00 2.57
3003 3090 8.676401 TCCATTGATTTAGTGTGTATGTCATTG 58.324 33.333 0.00 0.00 0.00 2.82
3004 3091 8.676401 CCATTGATTTAGTGTGTATGTCATTGA 58.324 33.333 0.00 0.00 0.00 2.57
3030 3117 7.815840 TTTTTGATGTGTTCTTCTATGTGGA 57.184 32.000 0.00 0.00 0.00 4.02
3031 3118 6.801539 TTTGATGTGTTCTTCTATGTGGAC 57.198 37.500 0.00 0.00 0.00 4.02
3032 3119 5.482163 TGATGTGTTCTTCTATGTGGACA 57.518 39.130 0.00 0.00 0.00 4.02
3033 3120 5.237815 TGATGTGTTCTTCTATGTGGACAC 58.762 41.667 0.00 0.00 0.00 3.67
3034 3121 4.002906 TGTGTTCTTCTATGTGGACACC 57.997 45.455 0.00 0.00 0.00 4.16
3035 3122 2.993899 GTGTTCTTCTATGTGGACACCG 59.006 50.000 0.00 0.00 0.00 4.94
3036 3123 2.028476 TGTTCTTCTATGTGGACACCGG 60.028 50.000 0.00 0.00 0.00 5.28
3037 3124 1.191535 TCTTCTATGTGGACACCGGG 58.808 55.000 6.32 0.00 0.00 5.73
3038 3125 0.902531 CTTCTATGTGGACACCGGGT 59.097 55.000 6.32 0.00 0.00 5.28
3039 3126 2.104967 CTTCTATGTGGACACCGGGTA 58.895 52.381 6.32 0.00 0.00 3.69
3040 3127 2.234896 TCTATGTGGACACCGGGTAA 57.765 50.000 6.32 0.00 0.00 2.85
3041 3128 2.754465 TCTATGTGGACACCGGGTAAT 58.246 47.619 6.32 0.00 0.00 1.89
3042 3129 2.696707 TCTATGTGGACACCGGGTAATC 59.303 50.000 6.32 0.13 0.00 1.75
3043 3130 1.580059 ATGTGGACACCGGGTAATCT 58.420 50.000 6.32 0.00 0.00 2.40
3044 3131 1.354101 TGTGGACACCGGGTAATCTT 58.646 50.000 6.32 0.00 0.00 2.40
3045 3132 1.276989 TGTGGACACCGGGTAATCTTC 59.723 52.381 6.32 0.00 0.00 2.87
3046 3133 1.276989 GTGGACACCGGGTAATCTTCA 59.723 52.381 6.32 0.00 0.00 3.02
3047 3134 1.553248 TGGACACCGGGTAATCTTCAG 59.447 52.381 6.32 0.00 0.00 3.02
3048 3135 1.553704 GGACACCGGGTAATCTTCAGT 59.446 52.381 6.32 0.00 0.00 3.41
3049 3136 2.418334 GGACACCGGGTAATCTTCAGTC 60.418 54.545 6.32 0.04 0.00 3.51
3050 3137 2.496470 GACACCGGGTAATCTTCAGTCT 59.504 50.000 6.32 0.00 0.00 3.24
3051 3138 2.233922 ACACCGGGTAATCTTCAGTCTG 59.766 50.000 6.32 0.00 0.00 3.51
3052 3139 1.831736 ACCGGGTAATCTTCAGTCTGG 59.168 52.381 6.32 0.00 0.00 3.86
3053 3140 1.139058 CCGGGTAATCTTCAGTCTGGG 59.861 57.143 0.00 0.00 0.00 4.45
3054 3141 1.831736 CGGGTAATCTTCAGTCTGGGT 59.168 52.381 0.00 0.00 0.00 4.51
3055 3142 2.159085 CGGGTAATCTTCAGTCTGGGTC 60.159 54.545 0.00 0.00 0.00 4.46
3056 3143 2.170817 GGGTAATCTTCAGTCTGGGTCC 59.829 54.545 0.00 0.00 0.00 4.46
3057 3144 2.159085 GGTAATCTTCAGTCTGGGTCCG 60.159 54.545 0.00 0.00 0.00 4.79
3058 3145 0.250513 AATCTTCAGTCTGGGTCCGC 59.749 55.000 0.00 0.00 0.00 5.54
3059 3146 1.617947 ATCTTCAGTCTGGGTCCGCC 61.618 60.000 0.00 0.00 0.00 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 7.065443 AGTGAAAAACGTATCCACTAATAAGGC 59.935 37.037 9.94 0.00 36.44 4.35
78 79 7.522073 CGTGCCTGTTATATATGGAAGCAAAAT 60.522 37.037 0.00 0.00 0.00 1.82
80 81 5.238432 CGTGCCTGTTATATATGGAAGCAAA 59.762 40.000 0.00 0.00 0.00 3.68
81 82 4.754618 CGTGCCTGTTATATATGGAAGCAA 59.245 41.667 0.00 0.00 0.00 3.91
82 83 4.314961 CGTGCCTGTTATATATGGAAGCA 58.685 43.478 0.00 0.00 0.00 3.91
141 142 8.819974 CATGAATATTTGGCAAAAGTGTTATCC 58.180 33.333 17.70 0.00 0.00 2.59
186 187 1.166531 CCACTAATAAGGCCTGCCGC 61.167 60.000 5.69 0.00 41.95 6.53
187 188 0.468226 TCCACTAATAAGGCCTGCCG 59.532 55.000 5.69 0.00 41.95 5.69
188 189 2.959465 ATCCACTAATAAGGCCTGCC 57.041 50.000 5.69 0.00 0.00 4.85
192 193 6.901081 AAAATGCTATCCACTAATAAGGCC 57.099 37.500 0.00 0.00 0.00 5.19
272 274 2.183478 TATATGGAAGCCATGCGTGG 57.817 50.000 21.33 21.33 44.84 4.94
320 328 5.760484 AAGCCACCCATGAATATTTGTTT 57.240 34.783 0.00 0.00 0.00 2.83
323 331 5.593909 TCTGTAAGCCACCCATGAATATTTG 59.406 40.000 0.00 0.00 0.00 2.32
483 500 8.749354 GTCAATATGGACTTTTCCCTTTATTGT 58.251 33.333 2.71 0.00 42.01 2.71
484 501 8.197439 GGTCAATATGGACTTTTCCCTTTATTG 58.803 37.037 10.13 0.00 42.01 1.90
492 509 8.749354 ACTTTTATGGTCAATATGGACTTTTCC 58.251 33.333 10.13 0.00 43.19 3.13
507 524 8.738645 AGATATGGAGAACAACTTTTATGGTC 57.261 34.615 0.00 0.00 34.66 4.02
517 534 8.616076 CATCCAACTAAAGATATGGAGAACAAC 58.384 37.037 0.00 0.00 44.63 3.32
536 555 2.572104 ACAGTCCCTCTAACCATCCAAC 59.428 50.000 0.00 0.00 0.00 3.77
537 556 2.571653 CACAGTCCCTCTAACCATCCAA 59.428 50.000 0.00 0.00 0.00 3.53
539 558 1.486726 CCACAGTCCCTCTAACCATCC 59.513 57.143 0.00 0.00 0.00 3.51
540 559 2.188817 ACCACAGTCCCTCTAACCATC 58.811 52.381 0.00 0.00 0.00 3.51
541 560 2.344093 ACCACAGTCCCTCTAACCAT 57.656 50.000 0.00 0.00 0.00 3.55
542 561 3.371965 GATACCACAGTCCCTCTAACCA 58.628 50.000 0.00 0.00 0.00 3.67
543 562 2.699321 GGATACCACAGTCCCTCTAACC 59.301 54.545 0.00 0.00 0.00 2.85
559 578 2.757124 CCTGGTGGGCTGGGGATAC 61.757 68.421 0.00 0.00 0.00 2.24
560 579 2.368192 CCTGGTGGGCTGGGGATA 60.368 66.667 0.00 0.00 0.00 2.59
570 589 1.549203 CAGGATTTGAACCCTGGTGG 58.451 55.000 0.00 0.00 44.68 4.61
575 594 0.779997 AGCACCAGGATTTGAACCCT 59.220 50.000 0.00 0.00 0.00 4.34
576 595 1.177401 GAGCACCAGGATTTGAACCC 58.823 55.000 0.00 0.00 0.00 4.11
577 596 0.804989 CGAGCACCAGGATTTGAACC 59.195 55.000 0.00 0.00 0.00 3.62
578 597 0.169009 GCGAGCACCAGGATTTGAAC 59.831 55.000 0.00 0.00 0.00 3.18
579 598 0.250684 TGCGAGCACCAGGATTTGAA 60.251 50.000 0.00 0.00 0.00 2.69
580 599 0.035152 ATGCGAGCACCAGGATTTGA 60.035 50.000 0.00 0.00 0.00 2.69
581 600 0.813184 AATGCGAGCACCAGGATTTG 59.187 50.000 0.00 0.00 0.00 2.32
582 601 1.549203 AAATGCGAGCACCAGGATTT 58.451 45.000 0.00 0.00 34.37 2.17
583 602 2.418368 TAAATGCGAGCACCAGGATT 57.582 45.000 0.00 0.00 0.00 3.01
584 603 2.645838 ATAAATGCGAGCACCAGGAT 57.354 45.000 0.00 0.00 0.00 3.24
585 604 2.418368 AATAAATGCGAGCACCAGGA 57.582 45.000 0.00 0.00 0.00 3.86
586 605 2.684881 AGAAATAAATGCGAGCACCAGG 59.315 45.455 0.00 0.00 0.00 4.45
587 606 3.374988 TCAGAAATAAATGCGAGCACCAG 59.625 43.478 0.00 0.00 0.00 4.00
588 607 3.342719 TCAGAAATAAATGCGAGCACCA 58.657 40.909 0.00 0.00 0.00 4.17
589 608 4.355543 TTCAGAAATAAATGCGAGCACC 57.644 40.909 0.00 0.00 0.00 5.01
590 609 6.875926 AAATTCAGAAATAAATGCGAGCAC 57.124 33.333 0.00 0.00 0.00 4.40
591 610 9.585099 AAATAAATTCAGAAATAAATGCGAGCA 57.415 25.926 0.00 0.00 0.00 4.26
607 626 5.449862 CGCCGGAAATCCTGAAATAAATTCA 60.450 40.000 5.05 0.00 45.71 2.57
608 627 4.976116 CGCCGGAAATCCTGAAATAAATTC 59.024 41.667 5.05 0.00 38.60 2.17
609 628 4.642885 TCGCCGGAAATCCTGAAATAAATT 59.357 37.500 5.05 0.00 0.00 1.82
610 629 4.204012 TCGCCGGAAATCCTGAAATAAAT 58.796 39.130 5.05 0.00 0.00 1.40
611 630 3.611970 TCGCCGGAAATCCTGAAATAAA 58.388 40.909 5.05 0.00 0.00 1.40
612 631 3.269538 TCGCCGGAAATCCTGAAATAA 57.730 42.857 5.05 0.00 0.00 1.40
613 632 2.992124 TCGCCGGAAATCCTGAAATA 57.008 45.000 5.05 0.00 0.00 1.40
614 633 1.949525 CATCGCCGGAAATCCTGAAAT 59.050 47.619 5.05 0.00 0.00 2.17
615 634 1.378531 CATCGCCGGAAATCCTGAAA 58.621 50.000 5.05 0.00 0.00 2.69
616 635 1.095228 GCATCGCCGGAAATCCTGAA 61.095 55.000 5.05 0.00 0.00 3.02
617 636 1.523711 GCATCGCCGGAAATCCTGA 60.524 57.895 5.05 0.00 0.00 3.86
618 637 2.885676 CGCATCGCCGGAAATCCTG 61.886 63.158 5.05 0.00 0.00 3.86
619 638 2.588877 CGCATCGCCGGAAATCCT 60.589 61.111 5.05 0.00 0.00 3.24
630 649 1.769098 CTCCCACTGAATGCGCATCG 61.769 60.000 25.53 17.09 0.00 3.84
631 650 1.442526 CCTCCCACTGAATGCGCATC 61.443 60.000 25.53 17.12 0.00 3.91
632 651 1.452651 CCTCCCACTGAATGCGCAT 60.453 57.895 19.28 19.28 0.00 4.73
633 652 2.046023 CCTCCCACTGAATGCGCA 60.046 61.111 14.96 14.96 0.00 6.09
634 653 1.817099 CTCCTCCCACTGAATGCGC 60.817 63.158 0.00 0.00 0.00 6.09
635 654 0.460987 GTCTCCTCCCACTGAATGCG 60.461 60.000 0.00 0.00 0.00 4.73
636 655 0.460987 CGTCTCCTCCCACTGAATGC 60.461 60.000 0.00 0.00 0.00 3.56
637 656 0.898320 ACGTCTCCTCCCACTGAATG 59.102 55.000 0.00 0.00 0.00 2.67
638 657 1.550976 GAACGTCTCCTCCCACTGAAT 59.449 52.381 0.00 0.00 0.00 2.57
639 658 0.966920 GAACGTCTCCTCCCACTGAA 59.033 55.000 0.00 0.00 0.00 3.02
640 659 0.898789 GGAACGTCTCCTCCCACTGA 60.899 60.000 8.87 0.00 41.61 3.41
641 660 1.592223 GGAACGTCTCCTCCCACTG 59.408 63.158 8.87 0.00 41.61 3.66
642 661 4.115270 GGAACGTCTCCTCCCACT 57.885 61.111 8.87 0.00 41.61 4.00
661 680 2.643764 ATAAGCGCCTCGTCGTCGAC 62.644 60.000 15.51 15.51 41.35 4.20
662 681 2.466982 ATAAGCGCCTCGTCGTCGA 61.467 57.895 2.29 4.42 44.12 4.20
663 682 2.024305 ATAAGCGCCTCGTCGTCG 59.976 61.111 2.29 0.00 38.55 5.12
664 683 1.944676 CCATAAGCGCCTCGTCGTC 60.945 63.158 2.29 0.00 0.00 4.20
665 684 2.104331 CCATAAGCGCCTCGTCGT 59.896 61.111 2.29 0.00 0.00 4.34
666 685 2.104331 ACCATAAGCGCCTCGTCG 59.896 61.111 2.29 0.00 0.00 5.12
667 686 1.141019 TCACCATAAGCGCCTCGTC 59.859 57.895 2.29 0.00 0.00 4.20
668 687 1.153628 GTCACCATAAGCGCCTCGT 60.154 57.895 2.29 0.00 0.00 4.18
669 688 0.460284 AAGTCACCATAAGCGCCTCG 60.460 55.000 2.29 0.00 0.00 4.63
670 689 1.291132 GAAGTCACCATAAGCGCCTC 58.709 55.000 2.29 0.00 0.00 4.70
671 690 0.460284 CGAAGTCACCATAAGCGCCT 60.460 55.000 2.29 0.00 0.00 5.52
672 691 0.739813 ACGAAGTCACCATAAGCGCC 60.740 55.000 2.29 0.00 29.74 6.53
673 692 1.917273 TACGAAGTCACCATAAGCGC 58.083 50.000 0.00 0.00 43.93 5.92
674 693 4.804139 AGATTTACGAAGTCACCATAAGCG 59.196 41.667 0.00 0.00 43.93 4.68
675 694 5.810587 TGAGATTTACGAAGTCACCATAAGC 59.189 40.000 0.00 0.00 43.93 3.09
676 695 7.759886 TCTTGAGATTTACGAAGTCACCATAAG 59.240 37.037 0.00 0.00 43.93 1.73
677 696 7.608153 TCTTGAGATTTACGAAGTCACCATAA 58.392 34.615 0.00 0.00 43.93 1.90
678 697 7.165460 TCTTGAGATTTACGAAGTCACCATA 57.835 36.000 0.00 0.00 43.93 2.74
679 698 6.037786 TCTTGAGATTTACGAAGTCACCAT 57.962 37.500 0.00 0.00 43.93 3.55
680 699 5.462530 TCTTGAGATTTACGAAGTCACCA 57.537 39.130 0.00 0.00 43.93 4.17
681 700 6.100004 TCATCTTGAGATTTACGAAGTCACC 58.900 40.000 0.00 0.00 35.39 4.02
682 701 7.763172 ATCATCTTGAGATTTACGAAGTCAC 57.237 36.000 0.00 0.00 35.39 3.67
683 702 9.468532 CATATCATCTTGAGATTTACGAAGTCA 57.531 33.333 0.00 0.00 35.39 3.41
684 703 8.431593 GCATATCATCTTGAGATTTACGAAGTC 58.568 37.037 0.00 0.00 35.39 3.01
685 704 7.386299 GGCATATCATCTTGAGATTTACGAAGT 59.614 37.037 0.00 0.00 37.29 3.01
686 705 7.411264 CGGCATATCATCTTGAGATTTACGAAG 60.411 40.741 0.00 0.00 31.21 3.79
687 706 6.366061 CGGCATATCATCTTGAGATTTACGAA 59.634 38.462 0.00 0.00 31.21 3.85
688 707 5.863935 CGGCATATCATCTTGAGATTTACGA 59.136 40.000 0.00 0.00 31.21 3.43
689 708 5.062683 CCGGCATATCATCTTGAGATTTACG 59.937 44.000 0.00 0.00 31.21 3.18
690 709 5.163814 GCCGGCATATCATCTTGAGATTTAC 60.164 44.000 24.80 0.00 31.21 2.01
691 710 4.937620 GCCGGCATATCATCTTGAGATTTA 59.062 41.667 24.80 0.00 31.21 1.40
692 711 3.755378 GCCGGCATATCATCTTGAGATTT 59.245 43.478 24.80 0.00 31.21 2.17
693 712 3.008813 AGCCGGCATATCATCTTGAGATT 59.991 43.478 31.54 0.00 31.21 2.40
694 713 2.570752 AGCCGGCATATCATCTTGAGAT 59.429 45.455 31.54 0.00 34.56 2.75
695 714 1.973515 AGCCGGCATATCATCTTGAGA 59.026 47.619 31.54 0.00 0.00 3.27
696 715 2.289257 TGAGCCGGCATATCATCTTGAG 60.289 50.000 31.54 0.00 0.00 3.02
697 716 1.693606 TGAGCCGGCATATCATCTTGA 59.306 47.619 31.54 0.00 0.00 3.02
698 717 2.074576 CTGAGCCGGCATATCATCTTG 58.925 52.381 31.54 7.95 0.00 3.02
699 718 1.696336 ACTGAGCCGGCATATCATCTT 59.304 47.619 31.54 3.33 0.00 2.40
700 719 1.274728 GACTGAGCCGGCATATCATCT 59.725 52.381 31.54 11.40 0.00 2.90
701 720 1.274728 AGACTGAGCCGGCATATCATC 59.725 52.381 31.54 19.98 0.00 2.92
702 721 1.346062 AGACTGAGCCGGCATATCAT 58.654 50.000 31.54 13.17 0.00 2.45
703 722 1.123077 AAGACTGAGCCGGCATATCA 58.877 50.000 31.54 22.44 0.00 2.15
704 723 2.139118 GAAAGACTGAGCCGGCATATC 58.861 52.381 31.54 18.63 0.00 1.63
705 724 1.539065 CGAAAGACTGAGCCGGCATAT 60.539 52.381 31.54 8.11 0.00 1.78
706 725 0.179111 CGAAAGACTGAGCCGGCATA 60.179 55.000 31.54 16.21 0.00 3.14
707 726 1.448540 CGAAAGACTGAGCCGGCAT 60.449 57.895 31.54 14.28 0.00 4.40
708 727 2.048222 CGAAAGACTGAGCCGGCA 60.048 61.111 31.54 7.98 0.00 5.69
709 728 2.815647 CCGAAAGACTGAGCCGGC 60.816 66.667 21.89 21.89 33.47 6.13
710 729 1.153745 CTCCGAAAGACTGAGCCGG 60.154 63.158 0.00 0.00 41.36 6.13
711 730 0.457851 ATCTCCGAAAGACTGAGCCG 59.542 55.000 0.00 0.00 36.65 5.52
712 731 1.933247 CATCTCCGAAAGACTGAGCC 58.067 55.000 0.00 0.00 36.65 4.70
713 732 1.134848 AGCATCTCCGAAAGACTGAGC 60.135 52.381 0.00 0.00 36.65 4.26
714 733 2.165234 TGAGCATCTCCGAAAGACTGAG 59.835 50.000 0.00 0.00 36.65 3.35
715 734 2.171003 TGAGCATCTCCGAAAGACTGA 58.829 47.619 0.00 0.00 36.65 3.41
716 735 2.662006 TGAGCATCTCCGAAAGACTG 57.338 50.000 0.00 0.00 36.65 3.51
717 736 3.320541 CCTATGAGCATCTCCGAAAGACT 59.679 47.826 0.00 0.00 36.65 3.24
718 737 3.553922 CCCTATGAGCATCTCCGAAAGAC 60.554 52.174 0.00 0.00 36.65 3.01
719 738 2.630098 CCCTATGAGCATCTCCGAAAGA 59.370 50.000 0.00 0.00 38.72 2.52
720 739 2.289320 CCCCTATGAGCATCTCCGAAAG 60.289 54.545 0.00 0.00 34.92 2.62
721 740 1.694150 CCCCTATGAGCATCTCCGAAA 59.306 52.381 0.00 0.00 34.92 3.46
722 741 1.342074 CCCCTATGAGCATCTCCGAA 58.658 55.000 0.00 0.00 34.92 4.30
723 742 0.188587 ACCCCTATGAGCATCTCCGA 59.811 55.000 0.00 0.00 34.92 4.55
724 743 1.821753 CTACCCCTATGAGCATCTCCG 59.178 57.143 0.00 0.00 34.92 4.63
725 744 2.183679 CCTACCCCTATGAGCATCTCC 58.816 57.143 0.00 0.00 34.92 3.71
726 745 2.183679 CCCTACCCCTATGAGCATCTC 58.816 57.143 0.00 0.00 34.92 2.75
727 746 1.509961 ACCCTACCCCTATGAGCATCT 59.490 52.381 0.00 0.00 34.92 2.90
728 747 1.625818 CACCCTACCCCTATGAGCATC 59.374 57.143 0.00 0.00 0.00 3.91
729 748 1.061346 ACACCCTACCCCTATGAGCAT 60.061 52.381 0.00 0.00 0.00 3.79
730 749 0.341961 ACACCCTACCCCTATGAGCA 59.658 55.000 0.00 0.00 0.00 4.26
731 750 0.759346 CACACCCTACCCCTATGAGC 59.241 60.000 0.00 0.00 0.00 4.26
732 751 0.759346 GCACACCCTACCCCTATGAG 59.241 60.000 0.00 0.00 0.00 2.90
733 752 1.046472 CGCACACCCTACCCCTATGA 61.046 60.000 0.00 0.00 0.00 2.15
734 753 1.335132 ACGCACACCCTACCCCTATG 61.335 60.000 0.00 0.00 0.00 2.23
735 754 1.002533 ACGCACACCCTACCCCTAT 59.997 57.895 0.00 0.00 0.00 2.57
736 755 1.985662 CACGCACACCCTACCCCTA 60.986 63.158 0.00 0.00 0.00 3.53
737 756 3.319198 CACGCACACCCTACCCCT 61.319 66.667 0.00 0.00 0.00 4.79
738 757 3.633116 ACACGCACACCCTACCCC 61.633 66.667 0.00 0.00 0.00 4.95
739 758 2.358247 CACACGCACACCCTACCC 60.358 66.667 0.00 0.00 0.00 3.69
740 759 1.959226 CACACACGCACACCCTACC 60.959 63.158 0.00 0.00 0.00 3.18
741 760 2.604174 GCACACACGCACACCCTAC 61.604 63.158 0.00 0.00 0.00 3.18
742 761 2.280524 GCACACACGCACACCCTA 60.281 61.111 0.00 0.00 0.00 3.53
745 764 3.783588 GAACGCACACACGCACACC 62.784 63.158 0.00 0.00 36.19 4.16
746 765 2.350760 GAACGCACACACGCACAC 60.351 61.111 0.00 0.00 36.19 3.82
747 766 0.876342 TATGAACGCACACACGCACA 60.876 50.000 0.00 0.00 36.19 4.57
748 767 0.179250 CTATGAACGCACACACGCAC 60.179 55.000 0.00 0.00 36.19 5.34
749 768 1.288419 CCTATGAACGCACACACGCA 61.288 55.000 0.00 0.00 36.19 5.24
750 769 1.419922 CCTATGAACGCACACACGC 59.580 57.895 0.00 0.00 36.19 5.34
751 770 0.389296 TCCCTATGAACGCACACACG 60.389 55.000 0.00 0.00 39.50 4.49
752 771 2.024176 ATCCCTATGAACGCACACAC 57.976 50.000 0.00 0.00 0.00 3.82
753 772 3.196901 ACTTATCCCTATGAACGCACACA 59.803 43.478 0.00 0.00 0.00 3.72
754 773 3.555956 CACTTATCCCTATGAACGCACAC 59.444 47.826 0.00 0.00 0.00 3.82
755 774 3.196901 ACACTTATCCCTATGAACGCACA 59.803 43.478 0.00 0.00 0.00 4.57
756 775 3.793559 ACACTTATCCCTATGAACGCAC 58.206 45.455 0.00 0.00 0.00 5.34
757 776 5.538118 CATACACTTATCCCTATGAACGCA 58.462 41.667 0.00 0.00 0.00 5.24
758 777 4.389077 GCATACACTTATCCCTATGAACGC 59.611 45.833 0.00 0.00 0.00 4.84
759 778 4.621460 CGCATACACTTATCCCTATGAACG 59.379 45.833 0.00 0.00 0.00 3.95
760 779 4.389077 GCGCATACACTTATCCCTATGAAC 59.611 45.833 0.30 0.00 0.00 3.18
761 780 4.566004 GCGCATACACTTATCCCTATGAA 58.434 43.478 0.30 0.00 0.00 2.57
762 781 3.366985 CGCGCATACACTTATCCCTATGA 60.367 47.826 8.75 0.00 0.00 2.15
763 782 2.923655 CGCGCATACACTTATCCCTATG 59.076 50.000 8.75 0.00 0.00 2.23
764 783 2.561419 ACGCGCATACACTTATCCCTAT 59.439 45.455 5.73 0.00 0.00 2.57
765 784 1.958579 ACGCGCATACACTTATCCCTA 59.041 47.619 5.73 0.00 0.00 3.53
766 785 0.750850 ACGCGCATACACTTATCCCT 59.249 50.000 5.73 0.00 0.00 4.20
767 786 0.859232 CACGCGCATACACTTATCCC 59.141 55.000 5.73 0.00 0.00 3.85
768 787 1.567504 ACACGCGCATACACTTATCC 58.432 50.000 5.73 0.00 0.00 2.59
769 788 5.798434 TCATATACACGCGCATACACTTATC 59.202 40.000 5.73 0.00 0.00 1.75
770 789 5.705902 TCATATACACGCGCATACACTTAT 58.294 37.500 5.73 0.00 0.00 1.73
771 790 5.110940 TCATATACACGCGCATACACTTA 57.889 39.130 5.73 0.00 0.00 2.24
772 791 3.972403 TCATATACACGCGCATACACTT 58.028 40.909 5.73 0.00 0.00 3.16
773 792 3.565516 CTCATATACACGCGCATACACT 58.434 45.455 5.73 0.00 0.00 3.55
774 793 2.090658 GCTCATATACACGCGCATACAC 59.909 50.000 5.73 0.00 0.00 2.90
775 794 2.324860 GCTCATATACACGCGCATACA 58.675 47.619 5.73 0.00 0.00 2.29
776 795 1.317611 CGCTCATATACACGCGCATAC 59.682 52.381 5.73 0.00 39.11 2.39
777 796 1.613270 CGCTCATATACACGCGCATA 58.387 50.000 5.73 1.53 39.11 3.14
778 797 2.434688 CGCTCATATACACGCGCAT 58.565 52.632 5.73 0.00 39.11 4.73
779 798 3.916439 CGCTCATATACACGCGCA 58.084 55.556 5.73 0.00 39.11 6.09
783 802 2.193447 ACACAAGCGCTCATATACACG 58.807 47.619 12.06 0.00 0.00 4.49
784 803 3.243877 CAGACACAAGCGCTCATATACAC 59.756 47.826 12.06 0.00 0.00 2.90
785 804 3.119137 ACAGACACAAGCGCTCATATACA 60.119 43.478 12.06 0.00 0.00 2.29
786 805 3.448686 ACAGACACAAGCGCTCATATAC 58.551 45.455 12.06 1.00 0.00 1.47
787 806 3.801114 ACAGACACAAGCGCTCATATA 57.199 42.857 12.06 0.00 0.00 0.86
788 807 2.680312 ACAGACACAAGCGCTCATAT 57.320 45.000 12.06 0.00 0.00 1.78
789 808 2.492088 AGTACAGACACAAGCGCTCATA 59.508 45.455 12.06 0.00 0.00 2.15
790 809 1.273606 AGTACAGACACAAGCGCTCAT 59.726 47.619 12.06 0.00 0.00 2.90
791 810 0.673985 AGTACAGACACAAGCGCTCA 59.326 50.000 12.06 0.00 0.00 4.26
792 811 1.063806 CAGTACAGACACAAGCGCTC 58.936 55.000 12.06 0.00 0.00 5.03
793 812 0.673985 TCAGTACAGACACAAGCGCT 59.326 50.000 2.64 2.64 0.00 5.92
794 813 1.391485 CATCAGTACAGACACAAGCGC 59.609 52.381 0.00 0.00 0.00 5.92
795 814 2.677199 ACATCAGTACAGACACAAGCG 58.323 47.619 0.00 0.00 0.00 4.68
796 815 4.058124 TGAACATCAGTACAGACACAAGC 58.942 43.478 0.00 0.00 0.00 4.01
797 816 6.603237 TTTGAACATCAGTACAGACACAAG 57.397 37.500 0.00 0.00 0.00 3.16
798 817 6.993786 TTTTGAACATCAGTACAGACACAA 57.006 33.333 0.00 0.00 0.00 3.33
799 818 6.993786 TTTTTGAACATCAGTACAGACACA 57.006 33.333 0.00 0.00 0.00 3.72
852 871 4.458642 TGAGAAATCCATTTTGCGTCATCA 59.541 37.500 0.00 0.00 0.00 3.07
861 880 7.398332 AGTTTCTGCCTATGAGAAATCCATTTT 59.602 33.333 0.00 0.00 40.60 1.82
903 922 5.716979 AGTCCTCCTTATATAGCAGAACCA 58.283 41.667 0.00 0.00 0.00 3.67
905 924 9.863845 GATTTAGTCCTCCTTATATAGCAGAAC 57.136 37.037 0.00 0.00 0.00 3.01
1060 1087 2.049802 GTCGACGGAACTCGCCAA 60.050 61.111 0.00 0.00 43.89 4.52
1068 1095 1.731613 GTGCGTGATGTCGACGGAA 60.732 57.895 11.62 0.00 38.96 4.30
1074 1101 2.430075 TCCGTGTGCGTGATGTCG 60.430 61.111 0.00 0.00 36.15 4.35
1084 1111 1.372997 CCGACTCCAAGTCCGTGTG 60.373 63.158 1.69 0.00 42.12 3.82
1097 1124 0.900647 CCACAGGGACTTCTCCGACT 60.901 60.000 0.00 0.00 37.46 4.18
1194 1221 0.179111 CCATGCGAGCGTTCTCCTTA 60.179 55.000 0.00 0.00 35.94 2.69
1241 1268 2.010497 GGTTGAGGCTAAGCTTGTAGC 58.990 52.381 9.86 11.13 44.87 3.58
1375 1405 0.034337 ATTGGGTAGTTGTCACGCGT 59.966 50.000 5.58 5.58 0.00 6.01
1457 1487 2.203998 CCCCACACCCTCTCTGGT 60.204 66.667 0.00 0.00 39.96 4.00
1503 1533 0.033208 TGGAATTGATGCCCTCCACC 60.033 55.000 0.00 0.00 32.97 4.61
1575 1605 1.600023 CACAACCGGCACTTCCTTTA 58.400 50.000 0.00 0.00 0.00 1.85
1594 1624 1.795170 AATATCGCATTGCCGCCACC 61.795 55.000 2.41 0.00 0.00 4.61
1605 1635 4.257731 TGTACTTGAAAGCCAATATCGCA 58.742 39.130 0.00 0.00 33.68 5.10
1609 1639 6.266103 CCCATCATGTACTTGAAAGCCAATAT 59.734 38.462 14.70 0.00 33.68 1.28
1617 1647 3.088532 GTGGCCCATCATGTACTTGAAA 58.911 45.455 14.70 0.00 0.00 2.69
1634 1664 2.488355 TCGAGATTCCGACGTGGC 59.512 61.111 0.00 0.00 37.80 5.01
1640 1670 1.384989 GGCCTCTGTCGAGATTCCGA 61.385 60.000 0.00 0.00 39.74 4.55
1673 1703 0.533755 GTAGCCTTGCTCATCGGCAT 60.534 55.000 11.52 2.63 46.14 4.40
2072 2114 6.496911 TCATGATATCATCCCCGTCTTTCTTA 59.503 38.462 15.49 0.00 33.61 2.10
2076 2118 5.567037 TTCATGATATCATCCCCGTCTTT 57.433 39.130 15.49 0.00 33.61 2.52
2077 2119 5.567037 TTTCATGATATCATCCCCGTCTT 57.433 39.130 15.49 0.00 33.61 3.01
2078 2120 5.567037 TTTTCATGATATCATCCCCGTCT 57.433 39.130 15.49 0.00 33.61 4.18
2079 2121 7.921786 TTATTTTCATGATATCATCCCCGTC 57.078 36.000 15.49 0.00 33.61 4.79
2085 2130 9.917129 TGCCAACATTATTTTCATGATATCATC 57.083 29.630 15.49 0.00 33.61 2.92
2140 2187 7.744059 TGTAATTAATCACATGGTTACACACG 58.256 34.615 0.00 0.00 29.90 4.49
2160 2211 4.630069 GTCTAGGTGTGCGTTGAATGTAAT 59.370 41.667 0.00 0.00 0.00 1.89
2161 2212 3.991773 GTCTAGGTGTGCGTTGAATGTAA 59.008 43.478 0.00 0.00 0.00 2.41
2162 2213 3.257375 AGTCTAGGTGTGCGTTGAATGTA 59.743 43.478 0.00 0.00 0.00 2.29
2207 2260 1.770294 AAAAGACGCACCCCTCAAAA 58.230 45.000 0.00 0.00 0.00 2.44
2273 2326 1.482278 CTAATGAGAAGACGCCGAGC 58.518 55.000 0.00 0.00 0.00 5.03
2274 2327 1.482278 GCTAATGAGAAGACGCCGAG 58.518 55.000 0.00 0.00 0.00 4.63
2275 2328 0.102481 GGCTAATGAGAAGACGCCGA 59.898 55.000 0.00 0.00 0.00 5.54
2276 2329 2.594541 GGCTAATGAGAAGACGCCG 58.405 57.895 0.00 0.00 0.00 6.46
2277 2330 2.594541 CGGCTAATGAGAAGACGCC 58.405 57.895 0.00 0.00 38.90 5.68
2280 2333 0.933796 GCAGCGGCTAATGAGAAGAC 59.066 55.000 0.26 0.00 36.96 3.01
2281 2334 3.369381 GCAGCGGCTAATGAGAAGA 57.631 52.632 0.26 0.00 36.96 2.87
2292 2345 0.109735 GTAGTTTTTGGAGCAGCGGC 60.110 55.000 0.00 0.00 41.61 6.53
2293 2346 1.523758 AGTAGTTTTTGGAGCAGCGG 58.476 50.000 0.00 0.00 0.00 5.52
2294 2347 4.946784 AATAGTAGTTTTTGGAGCAGCG 57.053 40.909 0.00 0.00 0.00 5.18
2295 2348 7.119262 TGAGTTAATAGTAGTTTTTGGAGCAGC 59.881 37.037 0.00 0.00 0.00 5.25
2296 2349 8.547967 TGAGTTAATAGTAGTTTTTGGAGCAG 57.452 34.615 0.00 0.00 0.00 4.24
2297 2350 8.911918 TTGAGTTAATAGTAGTTTTTGGAGCA 57.088 30.769 0.00 0.00 0.00 4.26
2320 2373 9.696917 GATAATTAAGGCCCAGTTAATTGATTG 57.303 33.333 22.37 0.00 39.38 2.67
2321 2374 8.576442 CGATAATTAAGGCCCAGTTAATTGATT 58.424 33.333 22.37 10.90 39.38 2.57
2322 2375 7.309194 GCGATAATTAAGGCCCAGTTAATTGAT 60.309 37.037 22.37 14.92 39.38 2.57
2323 2376 6.016610 GCGATAATTAAGGCCCAGTTAATTGA 60.017 38.462 22.37 12.21 39.38 2.57
2324 2377 6.149633 GCGATAATTAAGGCCCAGTTAATTG 58.850 40.000 22.37 12.42 39.38 2.32
2325 2378 5.243060 GGCGATAATTAAGGCCCAGTTAATT 59.757 40.000 19.43 19.43 41.09 1.40
2326 2379 4.765339 GGCGATAATTAAGGCCCAGTTAAT 59.235 41.667 15.73 0.21 39.67 1.40
2327 2380 4.139038 GGCGATAATTAAGGCCCAGTTAA 58.861 43.478 15.73 0.00 39.67 2.01
2328 2381 3.746940 GGCGATAATTAAGGCCCAGTTA 58.253 45.455 15.73 0.00 39.67 2.24
2329 2382 2.583143 GGCGATAATTAAGGCCCAGTT 58.417 47.619 15.73 0.00 39.67 3.16
2330 2383 2.271944 GGCGATAATTAAGGCCCAGT 57.728 50.000 15.73 0.00 39.67 4.00
2334 2387 2.109425 ATCGGGCGATAATTAAGGCC 57.891 50.000 20.15 20.15 45.78 5.19
2344 2397 1.392710 AAGGAGACGAATCGGGCGAT 61.393 55.000 7.80 0.00 36.23 4.58
2363 2443 1.724545 TCTGGGAGGAAAGAAACGGA 58.275 50.000 0.00 0.00 0.00 4.69
2369 2449 2.225624 TGAGGTGATCTGGGAGGAAAGA 60.226 50.000 0.00 0.00 0.00 2.52
2393 2473 3.882326 CCGCTGGAGGGGCATGAT 61.882 66.667 0.00 0.00 41.34 2.45
2479 2559 5.465390 GGAACTTTGGATTAAGTTTTGTGCC 59.535 40.000 0.00 0.00 45.68 5.01
2509 2589 1.153489 CCCATCTCAGACCTGCACG 60.153 63.158 0.00 0.00 0.00 5.34
2517 2597 2.420547 GCTGTTACATGCCCATCTCAGA 60.421 50.000 0.00 0.00 0.00 3.27
2519 2599 1.743431 CGCTGTTACATGCCCATCTCA 60.743 52.381 0.00 0.00 0.00 3.27
2520 2600 0.940126 CGCTGTTACATGCCCATCTC 59.060 55.000 0.00 0.00 0.00 2.75
2521 2601 0.541392 TCGCTGTTACATGCCCATCT 59.459 50.000 0.00 0.00 0.00 2.90
2522 2602 1.265095 CATCGCTGTTACATGCCCATC 59.735 52.381 0.00 0.00 0.00 3.51
2523 2603 1.311859 CATCGCTGTTACATGCCCAT 58.688 50.000 0.00 0.00 0.00 4.00
2524 2604 0.747644 CCATCGCTGTTACATGCCCA 60.748 55.000 0.00 0.00 0.00 5.36
2525 2605 0.748005 ACCATCGCTGTTACATGCCC 60.748 55.000 0.00 0.00 0.00 5.36
2526 2606 0.378257 CACCATCGCTGTTACATGCC 59.622 55.000 0.00 0.00 0.00 4.40
2527 2607 0.248215 GCACCATCGCTGTTACATGC 60.248 55.000 0.00 0.00 0.00 4.06
2528 2608 1.085893 TGCACCATCGCTGTTACATG 58.914 50.000 0.00 0.00 0.00 3.21
2529 2609 1.942657 GATGCACCATCGCTGTTACAT 59.057 47.619 0.00 0.00 31.01 2.29
2530 2610 1.066215 AGATGCACCATCGCTGTTACA 60.066 47.619 0.00 0.00 44.67 2.41
2531 2611 1.594862 GAGATGCACCATCGCTGTTAC 59.405 52.381 0.00 0.00 44.67 2.50
2532 2612 1.206849 TGAGATGCACCATCGCTGTTA 59.793 47.619 9.67 0.00 44.67 2.41
2533 2613 0.036105 TGAGATGCACCATCGCTGTT 60.036 50.000 9.67 0.00 44.67 3.16
2534 2614 0.461516 CTGAGATGCACCATCGCTGT 60.462 55.000 9.67 0.00 44.67 4.40
2535 2615 1.773054 GCTGAGATGCACCATCGCTG 61.773 60.000 9.67 9.86 44.67 5.18
2536 2616 1.523258 GCTGAGATGCACCATCGCT 60.523 57.895 9.67 0.00 44.67 4.93
2537 2617 1.164662 ATGCTGAGATGCACCATCGC 61.165 55.000 0.00 2.58 46.33 4.58
2538 2618 1.263484 GAATGCTGAGATGCACCATCG 59.737 52.381 0.00 0.00 46.33 3.84
2539 2619 1.263484 CGAATGCTGAGATGCACCATC 59.737 52.381 0.00 0.00 46.33 3.51
2540 2620 1.306148 CGAATGCTGAGATGCACCAT 58.694 50.000 0.00 0.00 46.33 3.55
2546 2626 4.269603 CAGAGGTAAACGAATGCTGAGATG 59.730 45.833 0.00 0.00 0.00 2.90
2549 2629 2.932614 CCAGAGGTAAACGAATGCTGAG 59.067 50.000 0.00 0.00 0.00 3.35
2555 2635 0.899720 TCGCCCAGAGGTAAACGAAT 59.100 50.000 0.00 0.00 34.57 3.34
2563 2643 2.871096 TAAACAATTCGCCCAGAGGT 57.129 45.000 0.00 0.00 34.57 3.85
2567 2647 2.618709 GAGGGATAAACAATTCGCCCAG 59.381 50.000 0.00 0.00 35.50 4.45
2568 2648 2.241176 AGAGGGATAAACAATTCGCCCA 59.759 45.455 0.00 0.00 35.50 5.36
2569 2649 2.932261 AGAGGGATAAACAATTCGCCC 58.068 47.619 0.00 0.00 34.03 6.13
2582 2662 3.140144 TGAAACCAAGTTGGAAGAGGGAT 59.860 43.478 28.80 0.00 40.96 3.85
2585 2665 3.990318 GTGAAACCAAGTTGGAAGAGG 57.010 47.619 28.80 0.46 40.96 3.69
2606 2686 3.320879 ATCTGACACAGGGCGCAGG 62.321 63.158 10.83 0.00 31.51 4.85
2612 2692 0.826715 ACCGATGATCTGACACAGGG 59.173 55.000 0.00 0.00 31.51 4.45
2626 2706 2.874701 GCATGCAGATACTGAAACCGAT 59.125 45.455 14.21 0.00 32.44 4.18
2629 2709 1.678101 GGGCATGCAGATACTGAAACC 59.322 52.381 21.36 2.51 32.44 3.27
2640 2720 2.874648 TAGCAAGACGGGGCATGCAG 62.875 60.000 21.36 12.58 41.18 4.41
2641 2721 2.269520 ATAGCAAGACGGGGCATGCA 62.270 55.000 21.36 0.00 41.18 3.96
2642 2722 1.103398 AATAGCAAGACGGGGCATGC 61.103 55.000 9.90 9.90 39.06 4.06
2643 2723 0.664761 CAATAGCAAGACGGGGCATG 59.335 55.000 0.00 0.00 0.00 4.06
2644 2724 0.546122 TCAATAGCAAGACGGGGCAT 59.454 50.000 0.00 0.00 0.00 4.40
2645 2725 0.546122 ATCAATAGCAAGACGGGGCA 59.454 50.000 0.00 0.00 0.00 5.36
2646 2726 1.680338 AATCAATAGCAAGACGGGGC 58.320 50.000 0.00 0.00 0.00 5.80
2667 2748 6.264067 CCCAAATTTTTGCCCAAATCACTAAA 59.736 34.615 0.00 0.00 36.86 1.85
2671 2752 3.888323 ACCCAAATTTTTGCCCAAATCAC 59.112 39.130 0.00 0.00 36.86 3.06
2689 2771 4.080807 ACATGGTATCATCACGTTAACCCA 60.081 41.667 0.00 0.00 0.00 4.51
2698 2780 4.330944 TCGGGTAACATGGTATCATCAC 57.669 45.455 2.88 0.00 39.74 3.06
2699 2781 4.802583 GCATCGGGTAACATGGTATCATCA 60.803 45.833 2.88 0.00 39.74 3.07
2701 2783 3.327757 AGCATCGGGTAACATGGTATCAT 59.672 43.478 2.88 0.00 39.74 2.45
2702 2784 2.703536 AGCATCGGGTAACATGGTATCA 59.296 45.455 2.88 0.00 39.74 2.15
2703 2785 3.402628 AGCATCGGGTAACATGGTATC 57.597 47.619 0.00 0.00 39.74 2.24
2704 2786 3.007614 GGTAGCATCGGGTAACATGGTAT 59.992 47.826 0.00 0.00 35.88 2.73
2705 2787 2.366266 GGTAGCATCGGGTAACATGGTA 59.634 50.000 0.00 0.00 34.81 3.25
2707 2789 1.542547 GGGTAGCATCGGGTAACATGG 60.543 57.143 0.00 0.00 36.40 3.66
2708 2790 1.872237 CGGGTAGCATCGGGTAACATG 60.872 57.143 0.00 0.00 36.40 3.21
2709 2791 0.391597 CGGGTAGCATCGGGTAACAT 59.608 55.000 0.00 0.00 36.40 2.71
2710 2792 0.683828 TCGGGTAGCATCGGGTAACA 60.684 55.000 0.00 0.00 36.40 2.41
2711 2793 0.677842 ATCGGGTAGCATCGGGTAAC 59.322 55.000 0.00 0.00 33.91 2.50
2714 2796 3.138625 CATCGGGTAGCATCGGGT 58.861 61.111 0.00 0.00 0.00 5.28
2715 2797 2.357517 GCATCGGGTAGCATCGGG 60.358 66.667 0.00 0.00 0.00 5.14
2716 2798 2.357517 GGCATCGGGTAGCATCGG 60.358 66.667 0.00 0.00 0.00 4.18
2717 2799 1.956170 GTGGCATCGGGTAGCATCG 60.956 63.158 0.00 0.00 0.00 3.84
2762 2849 5.385198 TGGCAATAAGGAGAAACAAGAGTT 58.615 37.500 0.00 0.00 40.40 3.01
2782 2869 6.872920 TCTTACCACCAATGAATAATTTGGC 58.127 36.000 1.72 0.00 31.63 4.52
2793 2880 8.224389 TCATGTATTGAATCTTACCACCAATG 57.776 34.615 0.00 0.00 0.00 2.82
2796 2883 7.194112 TCTCATGTATTGAATCTTACCACCA 57.806 36.000 0.00 0.00 32.78 4.17
2815 2902 9.425248 ACCACCAATGAATAATTTGTATCTCAT 57.575 29.630 0.00 0.00 0.00 2.90
2833 2920 7.503566 CCTCATGTATTGAATCTTACCACCAAT 59.496 37.037 0.00 0.00 32.78 3.16
2864 2951 6.758886 GTCCCAATGAAATGTGTGTACAAAAA 59.241 34.615 0.00 0.00 40.84 1.94
2873 2960 2.577606 TCGGTCCCAATGAAATGTGT 57.422 45.000 0.00 0.00 0.00 3.72
2900 2987 2.185350 CTACGCCCCTGCTGACTG 59.815 66.667 0.00 0.00 34.43 3.51
2901 2988 2.856039 TAGCTACGCCCCTGCTGACT 62.856 60.000 0.00 0.00 37.62 3.41
2902 2989 2.423898 TAGCTACGCCCCTGCTGAC 61.424 63.158 0.00 0.00 37.62 3.51
2903 2990 2.043349 TAGCTACGCCCCTGCTGA 60.043 61.111 0.00 0.00 37.62 4.26
2904 2991 2.107141 GTAGCTACGCCCCTGCTG 59.893 66.667 8.40 0.00 37.62 4.41
2905 2992 3.528370 CGTAGCTACGCCCCTGCT 61.528 66.667 31.24 0.00 43.14 4.24
2917 3004 1.358046 CCGGGTAGCTGTACGTAGC 59.642 63.158 1.93 1.93 44.01 3.58
2918 3005 0.379669 CACCGGGTAGCTGTACGTAG 59.620 60.000 6.32 0.00 0.00 3.51
2919 3006 0.322456 ACACCGGGTAGCTGTACGTA 60.322 55.000 6.32 0.00 0.00 3.57
2920 3007 1.589716 GACACCGGGTAGCTGTACGT 61.590 60.000 6.32 0.00 0.00 3.57
2921 3008 1.138247 GACACCGGGTAGCTGTACG 59.862 63.158 6.32 0.00 0.00 3.67
2922 3009 0.108945 GTGACACCGGGTAGCTGTAC 60.109 60.000 6.32 0.00 0.00 2.90
2923 3010 0.251474 AGTGACACCGGGTAGCTGTA 60.251 55.000 6.32 0.00 0.00 2.74
2924 3011 1.533273 AGTGACACCGGGTAGCTGT 60.533 57.895 6.32 0.00 0.00 4.40
2925 3012 1.079819 CAGTGACACCGGGTAGCTG 60.080 63.158 6.32 8.83 0.00 4.24
2926 3013 2.283529 CCAGTGACACCGGGTAGCT 61.284 63.158 6.32 0.00 0.00 3.32
2927 3014 2.264794 CCAGTGACACCGGGTAGC 59.735 66.667 6.32 0.00 0.00 3.58
2928 3015 2.264794 GCCAGTGACACCGGGTAG 59.735 66.667 6.32 0.00 0.00 3.18
2929 3016 2.524640 TGCCAGTGACACCGGGTA 60.525 61.111 6.32 5.38 0.00 3.69
2930 3017 4.250305 GTGCCAGTGACACCGGGT 62.250 66.667 6.32 0.00 31.67 5.28
2935 3022 4.250305 ACCCGGTGCCAGTGACAC 62.250 66.667 0.13 0.13 37.31 3.67
2936 3023 3.936203 GACCCGGTGCCAGTGACA 61.936 66.667 0.00 0.00 0.00 3.58
2937 3024 4.699522 GGACCCGGTGCCAGTGAC 62.700 72.222 0.00 0.00 0.00 3.67
2939 3026 3.567579 ATTGGACCCGGTGCCAGTG 62.568 63.158 6.61 0.00 35.23 3.66
2940 3027 3.256960 ATTGGACCCGGTGCCAGT 61.257 61.111 6.61 7.23 35.23 4.00
2941 3028 1.622607 TAGATTGGACCCGGTGCCAG 61.623 60.000 6.61 0.00 35.23 4.85
2942 3029 1.613928 TAGATTGGACCCGGTGCCA 60.614 57.895 6.61 8.34 0.00 4.92
2943 3030 1.153229 GTAGATTGGACCCGGTGCC 60.153 63.158 6.61 0.98 0.00 5.01
2944 3031 0.743345 GTGTAGATTGGACCCGGTGC 60.743 60.000 1.25 1.25 0.00 5.01
2945 3032 0.902531 AGTGTAGATTGGACCCGGTG 59.097 55.000 0.00 0.00 0.00 4.94
2946 3033 1.278127 CAAGTGTAGATTGGACCCGGT 59.722 52.381 0.00 0.00 0.00 5.28
2947 3034 2.012051 GCAAGTGTAGATTGGACCCGG 61.012 57.143 0.00 0.00 0.00 5.73
2948 3035 1.066143 AGCAAGTGTAGATTGGACCCG 60.066 52.381 0.00 0.00 0.00 5.28
2949 3036 2.789409 AGCAAGTGTAGATTGGACCC 57.211 50.000 0.00 0.00 0.00 4.46
2950 3037 5.488341 TCTTAAGCAAGTGTAGATTGGACC 58.512 41.667 0.00 0.00 33.20 4.46
2951 3038 8.718102 TTATCTTAAGCAAGTGTAGATTGGAC 57.282 34.615 0.00 0.00 33.20 4.02
2952 3039 9.547753 GATTATCTTAAGCAAGTGTAGATTGGA 57.452 33.333 0.00 0.00 33.20 3.53
2953 3040 8.778358 GGATTATCTTAAGCAAGTGTAGATTGG 58.222 37.037 0.00 0.00 33.20 3.16
2954 3041 9.330063 TGGATTATCTTAAGCAAGTGTAGATTG 57.670 33.333 0.00 0.00 33.20 2.67
2957 3044 9.330063 CAATGGATTATCTTAAGCAAGTGTAGA 57.670 33.333 0.00 0.00 33.20 2.59
2958 3045 9.330063 TCAATGGATTATCTTAAGCAAGTGTAG 57.670 33.333 0.00 0.00 33.20 2.74
2959 3046 9.851686 ATCAATGGATTATCTTAAGCAAGTGTA 57.148 29.630 0.00 0.00 33.20 2.90
2960 3047 8.757982 ATCAATGGATTATCTTAAGCAAGTGT 57.242 30.769 0.00 0.00 33.20 3.55
2974 3061 9.898152 TGACATACACACTAAATCAATGGATTA 57.102 29.630 0.00 0.00 42.87 1.75
2975 3062 8.806429 TGACATACACACTAAATCAATGGATT 57.194 30.769 0.00 0.00 45.57 3.01
2976 3063 8.985315 ATGACATACACACTAAATCAATGGAT 57.015 30.769 0.00 0.00 34.43 3.41
2977 3064 8.676401 CAATGACATACACACTAAATCAATGGA 58.324 33.333 0.00 0.00 0.00 3.41
2978 3065 8.676401 TCAATGACATACACACTAAATCAATGG 58.324 33.333 0.00 0.00 0.00 3.16
3006 3093 7.284261 TGTCCACATAGAAGAACACATCAAAAA 59.716 33.333 0.00 0.00 0.00 1.94
3007 3094 6.770303 TGTCCACATAGAAGAACACATCAAAA 59.230 34.615 0.00 0.00 0.00 2.44
3008 3095 6.204688 GTGTCCACATAGAAGAACACATCAAA 59.795 38.462 0.00 0.00 0.00 2.69
3009 3096 5.700832 GTGTCCACATAGAAGAACACATCAA 59.299 40.000 0.00 0.00 0.00 2.57
3010 3097 5.237815 GTGTCCACATAGAAGAACACATCA 58.762 41.667 0.00 0.00 0.00 3.07
3011 3098 4.631813 GGTGTCCACATAGAAGAACACATC 59.368 45.833 5.88 0.00 0.00 3.06
3012 3099 4.579869 GGTGTCCACATAGAAGAACACAT 58.420 43.478 5.88 0.00 0.00 3.21
3013 3100 3.554129 CGGTGTCCACATAGAAGAACACA 60.554 47.826 5.88 0.00 0.00 3.72
3014 3101 2.993899 CGGTGTCCACATAGAAGAACAC 59.006 50.000 0.00 0.00 0.00 3.32
3015 3102 2.028476 CCGGTGTCCACATAGAAGAACA 60.028 50.000 0.00 0.00 0.00 3.18
3016 3103 2.618053 CCGGTGTCCACATAGAAGAAC 58.382 52.381 0.00 0.00 0.00 3.01
3017 3104 1.553248 CCCGGTGTCCACATAGAAGAA 59.447 52.381 0.00 0.00 0.00 2.52
3018 3105 1.191535 CCCGGTGTCCACATAGAAGA 58.808 55.000 0.00 0.00 0.00 2.87
3019 3106 0.902531 ACCCGGTGTCCACATAGAAG 59.097 55.000 0.00 0.00 0.00 2.85
3020 3107 2.234896 TACCCGGTGTCCACATAGAA 57.765 50.000 0.00 0.00 0.00 2.10
3021 3108 2.234896 TTACCCGGTGTCCACATAGA 57.765 50.000 0.00 0.00 0.00 1.98
3022 3109 2.698797 AGATTACCCGGTGTCCACATAG 59.301 50.000 0.00 0.00 0.00 2.23
3023 3110 2.754465 AGATTACCCGGTGTCCACATA 58.246 47.619 0.00 0.00 0.00 2.29
3024 3111 1.580059 AGATTACCCGGTGTCCACAT 58.420 50.000 0.00 0.00 0.00 3.21
3025 3112 1.276989 GAAGATTACCCGGTGTCCACA 59.723 52.381 0.00 0.00 0.00 4.17
3026 3113 1.276989 TGAAGATTACCCGGTGTCCAC 59.723 52.381 0.00 0.00 0.00 4.02
3027 3114 1.553248 CTGAAGATTACCCGGTGTCCA 59.447 52.381 0.00 0.00 0.00 4.02
3028 3115 1.553704 ACTGAAGATTACCCGGTGTCC 59.446 52.381 0.00 0.00 0.00 4.02
3029 3116 2.496470 AGACTGAAGATTACCCGGTGTC 59.504 50.000 0.00 0.00 0.00 3.67
3030 3117 2.233922 CAGACTGAAGATTACCCGGTGT 59.766 50.000 0.00 0.00 0.00 4.16
3031 3118 2.418746 CCAGACTGAAGATTACCCGGTG 60.419 54.545 3.32 0.00 0.00 4.94
3032 3119 1.831736 CCAGACTGAAGATTACCCGGT 59.168 52.381 3.32 0.00 0.00 5.28
3033 3120 1.139058 CCCAGACTGAAGATTACCCGG 59.861 57.143 3.32 0.00 0.00 5.73
3034 3121 1.831736 ACCCAGACTGAAGATTACCCG 59.168 52.381 3.32 0.00 0.00 5.28
3035 3122 2.170817 GGACCCAGACTGAAGATTACCC 59.829 54.545 3.32 0.00 0.00 3.69
3036 3123 2.159085 CGGACCCAGACTGAAGATTACC 60.159 54.545 3.32 0.00 0.00 2.85
3037 3124 2.738964 GCGGACCCAGACTGAAGATTAC 60.739 54.545 3.32 0.00 0.00 1.89
3038 3125 1.480954 GCGGACCCAGACTGAAGATTA 59.519 52.381 3.32 0.00 0.00 1.75
3039 3126 0.250513 GCGGACCCAGACTGAAGATT 59.749 55.000 3.32 0.00 0.00 2.40
3040 3127 1.617947 GGCGGACCCAGACTGAAGAT 61.618 60.000 3.32 0.00 0.00 2.40
3041 3128 2.283529 GGCGGACCCAGACTGAAGA 61.284 63.158 3.32 0.00 0.00 2.87
3042 3129 2.266055 GGCGGACCCAGACTGAAG 59.734 66.667 3.32 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.