Multiple sequence alignment - TraesCS6B01G053900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G053900 chr6B 100.000 2567 0 0 1 2567 34083769 34081203 0.000000e+00 4741
1 TraesCS6B01G053900 chr6A 92.888 1167 51 23 560 1697 20140449 20139286 0.000000e+00 1666
2 TraesCS6B01G053900 chr6A 90.146 548 41 6 23 566 20141013 20140475 0.000000e+00 701
3 TraesCS6B01G053900 chr6A 87.245 196 21 3 2376 2567 133370856 133370661 1.200000e-53 220
4 TraesCS6B01G053900 chr6D 92.542 1019 39 14 707 1690 20088617 20087601 0.000000e+00 1426
5 TraesCS6B01G053900 chr6D 92.060 466 32 5 1694 2155 20087256 20086792 0.000000e+00 651
6 TraesCS6B01G053900 chr6D 87.975 316 31 5 396 708 20089156 20088845 1.450000e-97 366
7 TraesCS6B01G053900 chr7D 88.265 196 19 3 2376 2567 477861418 477861613 5.520000e-57 231
8 TraesCS6B01G053900 chr7D 80.075 266 33 11 522 784 481190409 481190161 2.030000e-41 180
9 TraesCS6B01G053900 chr2D 88.947 190 17 2 2377 2563 8680021 8680209 5.520000e-57 231
10 TraesCS6B01G053900 chr2D 86.772 189 19 4 2385 2567 313026250 313026062 3.350000e-49 206
11 TraesCS6B01G053900 chr2D 90.789 76 5 2 2297 2372 522609199 522609272 1.630000e-17 100
12 TraesCS6B01G053900 chr3D 89.189 185 16 2 2189 2372 474816673 474816492 7.150000e-56 228
13 TraesCS6B01G053900 chr3D 95.327 107 5 0 2189 2295 173713168 173713062 1.220000e-38 171
14 TraesCS6B01G053900 chr3D 78.277 267 51 6 37 299 596698747 596698484 5.680000e-37 165
15 TraesCS6B01G053900 chr3B 81.852 270 41 7 34 297 511134545 511134812 1.200000e-53 220
16 TraesCS6B01G053900 chr3B 81.509 265 42 6 34 293 590251925 590252187 7.200000e-51 211
17 TraesCS6B01G053900 chr3B 79.623 265 47 6 34 293 821297721 821297983 1.570000e-42 183
18 TraesCS6B01G053900 chr3B 94.286 105 6 0 2189 2293 820413615 820413719 7.350000e-36 161
19 TraesCS6B01G053900 chr1B 88.298 188 17 3 2382 2565 593000992 593001178 1.200000e-53 220
20 TraesCS6B01G053900 chr1B 94.286 105 6 0 2191 2295 497800841 497800945 7.350000e-36 161
21 TraesCS6B01G053900 chr7A 81.413 269 42 7 30 293 418669406 418669671 2.000000e-51 213
22 TraesCS6B01G053900 chr1D 87.047 193 19 3 2376 2565 298441033 298440844 2.000000e-51 213
23 TraesCS6B01G053900 chr5A 88.268 179 17 2 2392 2567 705956687 705956864 7.200000e-51 211
24 TraesCS6B01G053900 chr5A 78.947 266 49 6 34 294 534939414 534939677 9.440000e-40 174
25 TraesCS6B01G053900 chr5A 94.286 105 6 0 2191 2295 366139262 366139158 7.350000e-36 161
26 TraesCS6B01G053900 chr5A 93.458 107 7 0 2189 2295 36245024 36244918 2.640000e-35 159
27 TraesCS6B01G053900 chr3A 87.709 179 19 1 2392 2567 569644432 569644254 3.350000e-49 206
28 TraesCS6B01G053900 chr3A 84.259 108 13 2 523 627 442750984 442751090 4.520000e-18 102
29 TraesCS6B01G053900 chr4A 80.827 266 44 7 34 294 438615522 438615259 4.330000e-48 202
30 TraesCS6B01G053900 chr2B 85.641 195 23 3 2376 2567 724739901 724739709 1.560000e-47 200
31 TraesCS6B01G053900 chr7B 80.451 266 31 10 522 784 506762402 506762155 1.570000e-42 183
32 TraesCS6B01G053900 chr5B 78.868 265 44 8 523 784 641046776 641046521 4.390000e-38 169
33 TraesCS6B01G053900 chr5D 94.393 107 6 0 2189 2295 217748472 217748366 5.680000e-37 165
34 TraesCS6B01G053900 chr4D 94.393 107 6 0 2189 2295 1994931 1994825 5.680000e-37 165
35 TraesCS6B01G053900 chr4D 86.957 138 17 1 2189 2325 507420933 507421070 1.230000e-33 154
36 TraesCS6B01G053900 chr4D 75.494 253 57 5 34 283 508338901 508339151 4.490000e-23 119


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G053900 chr6B 34081203 34083769 2566 True 4741.000000 4741 100.000 1 2567 1 chr6B.!!$R1 2566
1 TraesCS6B01G053900 chr6A 20139286 20141013 1727 True 1183.500000 1666 91.517 23 1697 2 chr6A.!!$R2 1674
2 TraesCS6B01G053900 chr6D 20086792 20089156 2364 True 814.333333 1426 90.859 396 2155 3 chr6D.!!$R1 1759

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
958 1271 0.17907 TGCTCCTGCACGTTTGTACA 60.179 50.0 0.0 0.0 45.31 2.9 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2222 2884 0.033894 AACCGAGGTGTTGGGTTTGT 60.034 50.0 0.0 0.0 44.52 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 63 6.126449 ACTCCCTCCTTCCCAAAATATAAGAC 60.126 42.308 0.00 0.00 0.00 3.01
64 65 4.515567 CCTCCTTCCCAAAATATAAGACGC 59.484 45.833 0.00 0.00 0.00 5.19
109 110 9.248291 CTTTGTTGCATAACTTTGACTATGTTT 57.752 29.630 0.00 0.00 37.68 2.83
110 111 9.593134 TTTGTTGCATAACTTTGACTATGTTTT 57.407 25.926 0.00 0.00 37.68 2.43
111 112 9.593134 TTGTTGCATAACTTTGACTATGTTTTT 57.407 25.926 0.00 0.00 37.68 1.94
112 113 9.243637 TGTTGCATAACTTTGACTATGTTTTTC 57.756 29.630 0.00 0.00 37.68 2.29
114 115 8.795786 TGCATAACTTTGACTATGTTTTTCAC 57.204 30.769 0.00 0.00 0.00 3.18
115 116 8.409371 TGCATAACTTTGACTATGTTTTTCACA 58.591 29.630 0.00 0.00 40.71 3.58
183 187 4.930463 TTGCAAAGCGAATACAACGATA 57.070 36.364 0.00 0.00 0.00 2.92
252 257 6.971602 TCAAAGTCGTGCATTAAAAACCATA 58.028 32.000 0.00 0.00 0.00 2.74
258 263 6.858993 GTCGTGCATTAAAAACCATACAAAGA 59.141 34.615 0.00 0.00 0.00 2.52
267 272 9.522804 TTAAAAACCATACAAAGACAATCACAC 57.477 29.630 0.00 0.00 0.00 3.82
318 323 2.433446 CAGAGGCTGCAACCACCT 59.567 61.111 9.23 2.75 36.19 4.00
330 335 2.048503 CCACCTCGTCCGACCAAC 60.049 66.667 0.00 0.00 0.00 3.77
337 342 1.300620 CGTCCGACCAACAGCTCAA 60.301 57.895 0.00 0.00 0.00 3.02
340 345 1.880027 GTCCGACCAACAGCTCAATTT 59.120 47.619 0.00 0.00 0.00 1.82
346 351 5.584649 CCGACCAACAGCTCAATTTTCTATA 59.415 40.000 0.00 0.00 0.00 1.31
352 357 9.294030 CCAACAGCTCAATTTTCTATACATTTC 57.706 33.333 0.00 0.00 0.00 2.17
355 360 8.186821 ACAGCTCAATTTTCTATACATTTCTGC 58.813 33.333 0.00 0.00 0.00 4.26
366 371 9.472361 TTCTATACATTTCTGCGACTAATAACC 57.528 33.333 0.00 0.00 0.00 2.85
439 444 3.006537 ACGTAGTGCTTGTCCTTATGTGT 59.993 43.478 0.00 0.00 42.51 3.72
467 472 8.089625 TCAATGATTACAGGAGGTATCTTTCA 57.910 34.615 0.00 0.00 0.00 2.69
468 473 8.206867 TCAATGATTACAGGAGGTATCTTTCAG 58.793 37.037 0.00 0.00 0.00 3.02
502 507 5.751586 TCTTATTGTTAGCCAAACCTAGGG 58.248 41.667 14.81 0.00 37.27 3.53
529 534 4.495565 TCTCTAGCTAGCTAGTACTCCCT 58.504 47.826 38.27 11.37 44.59 4.20
530 535 4.529377 TCTCTAGCTAGCTAGTACTCCCTC 59.471 50.000 38.27 2.82 44.59 4.30
536 543 3.306472 AGCTAGTACTCCCTCCTTCTG 57.694 52.381 0.00 0.00 0.00 3.02
559 566 7.877612 TCTGAAAATATAAGGCGCTGATTGATA 59.122 33.333 7.64 0.00 0.00 2.15
751 1029 1.526464 GTCAAAAACCATGCAAAGCCG 59.474 47.619 0.00 0.00 0.00 5.52
787 1065 3.269592 TTGGGAAGAAGGGAGTACTGA 57.730 47.619 0.00 0.00 0.00 3.41
788 1066 2.537143 TGGGAAGAAGGGAGTACTGAC 58.463 52.381 0.00 0.00 0.00 3.51
958 1271 0.179070 TGCTCCTGCACGTTTGTACA 60.179 50.000 0.00 0.00 45.31 2.90
1018 1331 1.021390 CATGGCTCGTGACAAGTCCC 61.021 60.000 0.00 0.00 33.27 4.46
1025 1338 3.998672 TGACAAGTCCCGCGGGTC 61.999 66.667 41.57 36.15 36.47 4.46
1444 1757 2.074576 CGTCCGGAGCTATCTCGATTA 58.925 52.381 3.06 0.00 40.26 1.75
1510 1823 2.029380 CCCATTTCGGTTTCTTTGGACC 60.029 50.000 0.00 0.00 0.00 4.46
1527 1840 4.023980 TGGACCGAGATGAACATAAGTCT 58.976 43.478 0.00 0.00 0.00 3.24
1531 1844 4.651503 ACCGAGATGAACATAAGTCTGGAT 59.348 41.667 0.00 0.00 0.00 3.41
1581 1894 4.989797 CACCATTAGCTCATCATCTCTGTC 59.010 45.833 0.00 0.00 0.00 3.51
1582 1895 4.652881 ACCATTAGCTCATCATCTCTGTCA 59.347 41.667 0.00 0.00 0.00 3.58
1722 2380 5.586243 TCCAGAAATGATTCCAGATCGAAAC 59.414 40.000 0.00 0.00 36.12 2.78
1730 2388 1.207089 TCCAGATCGAAACCTCGCAAT 59.793 47.619 0.00 0.00 45.04 3.56
1733 2391 2.009774 AGATCGAAACCTCGCAATTGG 58.990 47.619 7.72 0.00 45.04 3.16
1787 2445 9.027129 GTACAAAACTATGACGCTATGACATTA 57.973 33.333 0.00 0.00 34.74 1.90
1804 2462 7.920160 TGACATTACAGCTTGATTTACATGA 57.080 32.000 0.00 0.00 0.00 3.07
1815 2473 6.971184 GCTTGATTTACATGAAGATGGAGTTG 59.029 38.462 0.00 0.00 33.39 3.16
1832 2490 1.804151 GTTGCGTTGCCTGATGAACTA 59.196 47.619 0.00 0.00 0.00 2.24
1876 2534 7.918076 ACATCTTGTGGAACTAGGAAATCTTA 58.082 34.615 0.00 0.00 40.19 2.10
1877 2535 8.043710 ACATCTTGTGGAACTAGGAAATCTTAG 58.956 37.037 0.00 0.00 40.19 2.18
1942 2603 6.358558 GTGATTTGTGATTTGCAGCAAATTTG 59.641 34.615 29.79 14.03 43.05 2.32
1966 2628 6.483307 TGCTGCCACATTCAGTAGTAATATTC 59.517 38.462 0.00 0.00 34.21 1.75
1989 2651 3.189287 CGGAGGATTTTCAACAAGTCAGG 59.811 47.826 0.00 0.00 0.00 3.86
2017 2679 4.752101 CACTCAGAGTCGTCAAAGGAAAAT 59.248 41.667 0.00 0.00 0.00 1.82
2025 2687 3.057596 TCGTCAAAGGAAAATCATGGTGC 60.058 43.478 0.00 0.00 0.00 5.01
2049 2711 2.028043 GGTTGCAGTTGCCAGCAC 59.972 61.111 1.06 0.00 41.05 4.40
2056 2718 1.228063 AGTTGCCAGCACTGACCTG 60.228 57.895 0.00 0.00 0.00 4.00
2103 2765 7.038302 TCGATGGCATTTTATATACCTCTTCCT 60.038 37.037 0.00 0.00 0.00 3.36
2112 2774 7.841282 TTATATACCTCTTCCTCTGGTCTTG 57.159 40.000 0.00 0.00 35.48 3.02
2118 2780 2.639347 TCTTCCTCTGGTCTTGCATGAA 59.361 45.455 3.51 0.00 0.00 2.57
2135 2797 4.217118 GCATGAAACTGTCTCAAATCCACT 59.783 41.667 0.00 0.00 0.00 4.00
2142 2804 2.158623 TGTCTCAAATCCACTGCACCTT 60.159 45.455 0.00 0.00 0.00 3.50
2150 2812 1.539388 TCCACTGCACCTTATTTTGCG 59.461 47.619 0.00 0.00 41.96 4.85
2155 2817 2.986479 CTGCACCTTATTTTGCGGAAAC 59.014 45.455 0.00 0.00 46.37 2.78
2156 2818 2.362397 TGCACCTTATTTTGCGGAAACA 59.638 40.909 0.00 0.00 41.96 2.83
2157 2819 2.986479 GCACCTTATTTTGCGGAAACAG 59.014 45.455 0.00 0.00 0.00 3.16
2158 2820 3.574614 CACCTTATTTTGCGGAAACAGG 58.425 45.455 15.86 15.86 37.19 4.00
2159 2821 2.029380 ACCTTATTTTGCGGAAACAGGC 60.029 45.455 16.86 0.00 35.66 4.85
2160 2822 2.231235 CCTTATTTTGCGGAAACAGGCT 59.769 45.455 0.00 0.00 28.97 4.58
2161 2823 3.306019 CCTTATTTTGCGGAAACAGGCTT 60.306 43.478 0.00 0.00 28.97 4.35
2162 2824 2.153366 ATTTTGCGGAAACAGGCTTG 57.847 45.000 0.00 0.00 0.00 4.01
2163 2825 0.529555 TTTTGCGGAAACAGGCTTGC 60.530 50.000 0.00 0.00 0.00 4.01
2164 2826 2.676016 TTTGCGGAAACAGGCTTGCG 62.676 55.000 0.00 0.00 42.34 4.85
2165 2827 3.353836 GCGGAAACAGGCTTGCGA 61.354 61.111 2.64 0.00 42.06 5.10
2166 2828 2.863153 CGGAAACAGGCTTGCGAG 59.137 61.111 0.00 0.00 42.06 5.03
2167 2829 1.667830 CGGAAACAGGCTTGCGAGA 60.668 57.895 4.70 0.00 42.06 4.04
2168 2830 1.227999 CGGAAACAGGCTTGCGAGAA 61.228 55.000 4.70 0.00 42.06 2.87
2169 2831 0.238553 GGAAACAGGCTTGCGAGAAC 59.761 55.000 4.70 0.00 0.00 3.01
2170 2832 0.238553 GAAACAGGCTTGCGAGAACC 59.761 55.000 4.70 0.00 0.00 3.62
2171 2833 0.465460 AAACAGGCTTGCGAGAACCA 60.465 50.000 4.70 0.00 0.00 3.67
2172 2834 1.166531 AACAGGCTTGCGAGAACCAC 61.167 55.000 4.70 0.00 0.00 4.16
2173 2835 1.597854 CAGGCTTGCGAGAACCACA 60.598 57.895 4.70 0.00 0.00 4.17
2174 2836 1.148273 AGGCTTGCGAGAACCACAA 59.852 52.632 4.70 0.00 0.00 3.33
2175 2837 1.166531 AGGCTTGCGAGAACCACAAC 61.167 55.000 4.70 0.00 0.00 3.32
2176 2838 1.444119 GGCTTGCGAGAACCACAACA 61.444 55.000 4.70 0.00 0.00 3.33
2177 2839 0.380378 GCTTGCGAGAACCACAACAA 59.620 50.000 4.70 0.00 0.00 2.83
2178 2840 1.859998 GCTTGCGAGAACCACAACAAC 60.860 52.381 4.70 0.00 0.00 3.32
2179 2841 0.375454 TTGCGAGAACCACAACAACG 59.625 50.000 0.00 0.00 0.00 4.10
2180 2842 0.741574 TGCGAGAACCACAACAACGT 60.742 50.000 0.00 0.00 0.00 3.99
2181 2843 0.375803 GCGAGAACCACAACAACGTT 59.624 50.000 0.00 0.00 0.00 3.99
2182 2844 1.202098 GCGAGAACCACAACAACGTTT 60.202 47.619 0.00 0.00 0.00 3.60
2183 2845 2.729778 GCGAGAACCACAACAACGTTTT 60.730 45.455 0.00 0.00 0.00 2.43
2184 2846 3.095738 CGAGAACCACAACAACGTTTTC 58.904 45.455 0.00 0.00 0.00 2.29
2185 2847 3.425094 CGAGAACCACAACAACGTTTTCA 60.425 43.478 0.00 0.00 0.00 2.69
2186 2848 4.477780 GAGAACCACAACAACGTTTTCAA 58.522 39.130 0.00 0.00 0.00 2.69
2187 2849 4.872664 AGAACCACAACAACGTTTTCAAA 58.127 34.783 0.00 0.00 0.00 2.69
2188 2850 5.474825 AGAACCACAACAACGTTTTCAAAT 58.525 33.333 0.00 0.00 0.00 2.32
2189 2851 5.347364 AGAACCACAACAACGTTTTCAAATG 59.653 36.000 0.00 0.00 0.00 2.32
2190 2852 4.810790 ACCACAACAACGTTTTCAAATGA 58.189 34.783 0.00 0.00 0.00 2.57
2191 2853 4.862018 ACCACAACAACGTTTTCAAATGAG 59.138 37.500 0.00 0.00 0.00 2.90
2192 2854 4.259770 CCACAACAACGTTTTCAAATGAGC 60.260 41.667 0.00 0.00 0.00 4.26
2193 2855 3.862845 ACAACAACGTTTTCAAATGAGCC 59.137 39.130 0.00 0.00 0.00 4.70
2194 2856 4.111916 CAACAACGTTTTCAAATGAGCCT 58.888 39.130 0.00 0.00 0.00 4.58
2195 2857 5.163602 ACAACAACGTTTTCAAATGAGCCTA 60.164 36.000 0.00 0.00 0.00 3.93
2196 2858 5.108385 ACAACGTTTTCAAATGAGCCTAG 57.892 39.130 0.00 0.00 0.00 3.02
2197 2859 3.831715 ACGTTTTCAAATGAGCCTAGC 57.168 42.857 0.00 0.00 0.00 3.42
2198 2860 3.412386 ACGTTTTCAAATGAGCCTAGCT 58.588 40.909 0.00 0.00 43.88 3.32
2208 2870 3.944476 AGCCTAGCTCAACTGGTTG 57.056 52.632 7.10 7.10 41.71 3.77
2209 2871 0.326264 AGCCTAGCTCAACTGGTTGG 59.674 55.000 12.65 5.82 40.78 3.77
2210 2872 0.678048 GCCTAGCTCAACTGGTTGGG 60.678 60.000 12.65 10.80 43.71 4.12
2211 2873 0.035056 CCTAGCTCAACTGGTTGGGG 60.035 60.000 14.16 8.58 41.25 4.96
2212 2874 0.035056 CTAGCTCAACTGGTTGGGGG 60.035 60.000 14.16 6.57 41.25 5.40
2213 2875 0.474854 TAGCTCAACTGGTTGGGGGA 60.475 55.000 14.16 0.00 41.25 4.81
2214 2876 1.303643 GCTCAACTGGTTGGGGGAG 60.304 63.158 14.16 5.72 41.25 4.30
2215 2877 2.069165 GCTCAACTGGTTGGGGGAGT 62.069 60.000 14.16 0.00 41.25 3.85
2216 2878 0.250901 CTCAACTGGTTGGGGGAGTG 60.251 60.000 12.65 0.00 40.78 3.51
2217 2879 1.228552 CAACTGGTTGGGGGAGTGG 60.229 63.158 5.64 0.00 36.95 4.00
2218 2880 1.386772 AACTGGTTGGGGGAGTGGA 60.387 57.895 0.00 0.00 0.00 4.02
2219 2881 0.776080 AACTGGTTGGGGGAGTGGAT 60.776 55.000 0.00 0.00 0.00 3.41
2220 2882 0.120377 ACTGGTTGGGGGAGTGGATA 59.880 55.000 0.00 0.00 0.00 2.59
2221 2883 1.275002 ACTGGTTGGGGGAGTGGATAT 60.275 52.381 0.00 0.00 0.00 1.63
2222 2884 2.021441 ACTGGTTGGGGGAGTGGATATA 60.021 50.000 0.00 0.00 0.00 0.86
2223 2885 2.372172 CTGGTTGGGGGAGTGGATATAC 59.628 54.545 0.00 0.00 0.00 1.47
2224 2886 2.293924 TGGTTGGGGGAGTGGATATACA 60.294 50.000 0.00 0.00 0.00 2.29
2225 2887 2.781174 GGTTGGGGGAGTGGATATACAA 59.219 50.000 0.00 0.00 0.00 2.41
2226 2888 3.203487 GGTTGGGGGAGTGGATATACAAA 59.797 47.826 0.00 0.00 0.00 2.83
2227 2889 4.204799 GTTGGGGGAGTGGATATACAAAC 58.795 47.826 0.00 0.00 0.00 2.93
2228 2890 2.781174 TGGGGGAGTGGATATACAAACC 59.219 50.000 0.00 0.00 0.00 3.27
2229 2891 2.107726 GGGGGAGTGGATATACAAACCC 59.892 54.545 17.77 17.77 37.30 4.11
2230 2892 2.781174 GGGGAGTGGATATACAAACCCA 59.219 50.000 23.85 4.16 38.73 4.51
2231 2893 3.203487 GGGGAGTGGATATACAAACCCAA 59.797 47.826 23.85 0.00 38.73 4.12
2232 2894 4.204799 GGGAGTGGATATACAAACCCAAC 58.795 47.826 19.95 0.00 37.68 3.77
2233 2895 4.324719 GGGAGTGGATATACAAACCCAACA 60.325 45.833 19.95 0.00 37.68 3.33
2234 2896 4.638865 GGAGTGGATATACAAACCCAACAC 59.361 45.833 0.00 0.00 0.00 3.32
2235 2897 4.595986 AGTGGATATACAAACCCAACACC 58.404 43.478 0.00 0.00 0.00 4.16
2236 2898 4.291249 AGTGGATATACAAACCCAACACCT 59.709 41.667 0.00 0.00 0.00 4.00
2237 2899 4.638865 GTGGATATACAAACCCAACACCTC 59.361 45.833 0.00 0.00 0.00 3.85
2238 2900 3.875134 GGATATACAAACCCAACACCTCG 59.125 47.826 0.00 0.00 0.00 4.63
2239 2901 2.194201 ATACAAACCCAACACCTCGG 57.806 50.000 0.00 0.00 0.00 4.63
2240 2902 0.838608 TACAAACCCAACACCTCGGT 59.161 50.000 0.00 0.00 0.00 4.69
2241 2903 0.033894 ACAAACCCAACACCTCGGTT 60.034 50.000 0.00 0.00 41.68 4.44
2242 2904 0.666374 CAAACCCAACACCTCGGTTC 59.334 55.000 0.00 0.00 38.96 3.62
2243 2905 0.256464 AAACCCAACACCTCGGTTCA 59.744 50.000 0.00 0.00 38.96 3.18
2244 2906 0.256464 AACCCAACACCTCGGTTCAA 59.744 50.000 0.00 0.00 34.80 2.69
2245 2907 0.256464 ACCCAACACCTCGGTTCAAA 59.744 50.000 0.00 0.00 0.00 2.69
2246 2908 1.133606 ACCCAACACCTCGGTTCAAAT 60.134 47.619 0.00 0.00 0.00 2.32
2247 2909 1.539827 CCCAACACCTCGGTTCAAATC 59.460 52.381 0.00 0.00 0.00 2.17
2248 2910 1.539827 CCAACACCTCGGTTCAAATCC 59.460 52.381 0.00 0.00 0.00 3.01
2249 2911 2.504367 CAACACCTCGGTTCAAATCCT 58.496 47.619 0.00 0.00 0.00 3.24
2250 2912 2.474410 ACACCTCGGTTCAAATCCTC 57.526 50.000 0.00 0.00 0.00 3.71
2251 2913 1.697432 ACACCTCGGTTCAAATCCTCA 59.303 47.619 0.00 0.00 0.00 3.86
2252 2914 2.076863 CACCTCGGTTCAAATCCTCAC 58.923 52.381 0.00 0.00 0.00 3.51
2253 2915 1.337823 ACCTCGGTTCAAATCCTCACG 60.338 52.381 0.00 0.00 0.00 4.35
2254 2916 1.359848 CTCGGTTCAAATCCTCACGG 58.640 55.000 0.00 0.00 0.00 4.94
2255 2917 0.970640 TCGGTTCAAATCCTCACGGA 59.029 50.000 0.00 0.00 45.16 4.69
2256 2918 1.067142 TCGGTTCAAATCCTCACGGAG 60.067 52.381 0.00 0.00 44.06 4.63
2264 2926 4.617875 CCTCACGGAGGCGAATTT 57.382 55.556 6.97 0.00 43.29 1.82
2265 2927 3.752796 CCTCACGGAGGCGAATTTA 57.247 52.632 6.97 0.00 43.29 1.40
2266 2928 1.571919 CCTCACGGAGGCGAATTTAG 58.428 55.000 6.97 0.00 43.29 1.85
2267 2929 1.571919 CTCACGGAGGCGAATTTAGG 58.428 55.000 0.00 0.00 0.00 2.69
2268 2930 0.899720 TCACGGAGGCGAATTTAGGT 59.100 50.000 0.00 0.00 0.00 3.08
2269 2931 1.276989 TCACGGAGGCGAATTTAGGTT 59.723 47.619 0.00 0.00 0.00 3.50
2270 2932 1.664151 CACGGAGGCGAATTTAGGTTC 59.336 52.381 0.00 0.00 0.00 3.62
2271 2933 1.296727 CGGAGGCGAATTTAGGTTCC 58.703 55.000 0.00 0.00 0.00 3.62
2272 2934 1.406341 CGGAGGCGAATTTAGGTTCCA 60.406 52.381 0.00 0.00 0.00 3.53
2273 2935 2.718563 GGAGGCGAATTTAGGTTCCAA 58.281 47.619 0.00 0.00 0.00 3.53
2274 2936 3.288092 GGAGGCGAATTTAGGTTCCAAT 58.712 45.455 0.00 0.00 0.00 3.16
2275 2937 3.699538 GGAGGCGAATTTAGGTTCCAATT 59.300 43.478 0.00 0.00 0.00 2.32
2276 2938 4.159693 GGAGGCGAATTTAGGTTCCAATTT 59.840 41.667 0.00 0.00 0.00 1.82
2277 2939 5.358725 GGAGGCGAATTTAGGTTCCAATTTA 59.641 40.000 0.00 0.00 0.00 1.40
2278 2940 6.040504 GGAGGCGAATTTAGGTTCCAATTTAT 59.959 38.462 0.00 0.00 0.00 1.40
2279 2941 7.417456 GGAGGCGAATTTAGGTTCCAATTTATT 60.417 37.037 0.00 0.00 0.00 1.40
2280 2942 7.489160 AGGCGAATTTAGGTTCCAATTTATTC 58.511 34.615 0.00 0.00 0.00 1.75
2281 2943 7.342026 AGGCGAATTTAGGTTCCAATTTATTCT 59.658 33.333 0.00 0.00 0.00 2.40
2282 2944 7.979537 GGCGAATTTAGGTTCCAATTTATTCTT 59.020 33.333 0.00 0.00 0.00 2.52
2283 2945 8.807581 GCGAATTTAGGTTCCAATTTATTCTTG 58.192 33.333 0.00 0.00 0.00 3.02
2286 2948 9.875691 AATTTAGGTTCCAATTTATTCTTGAGC 57.124 29.630 0.00 0.00 0.00 4.26
2287 2949 8.415950 TTTAGGTTCCAATTTATTCTTGAGCA 57.584 30.769 0.00 0.00 0.00 4.26
2288 2950 6.272822 AGGTTCCAATTTATTCTTGAGCAC 57.727 37.500 0.00 0.00 0.00 4.40
2289 2951 5.185828 AGGTTCCAATTTATTCTTGAGCACC 59.814 40.000 0.00 0.00 0.00 5.01
2290 2952 5.047377 GGTTCCAATTTATTCTTGAGCACCA 60.047 40.000 0.00 0.00 0.00 4.17
2291 2953 5.902613 TCCAATTTATTCTTGAGCACCAG 57.097 39.130 0.00 0.00 0.00 4.00
2292 2954 4.706476 TCCAATTTATTCTTGAGCACCAGG 59.294 41.667 0.00 0.00 0.00 4.45
2293 2955 4.427312 CAATTTATTCTTGAGCACCAGGC 58.573 43.478 0.00 0.00 45.30 4.85
2306 2968 4.608948 GCACCAGGCTAGTACTCATATT 57.391 45.455 0.00 0.00 40.25 1.28
2307 2969 4.962155 GCACCAGGCTAGTACTCATATTT 58.038 43.478 0.00 0.00 40.25 1.40
2308 2970 6.097915 GCACCAGGCTAGTACTCATATTTA 57.902 41.667 0.00 0.00 40.25 1.40
2309 2971 6.522054 GCACCAGGCTAGTACTCATATTTAA 58.478 40.000 0.00 0.00 40.25 1.52
2310 2972 6.990349 GCACCAGGCTAGTACTCATATTTAAA 59.010 38.462 0.00 0.00 40.25 1.52
2311 2973 7.497909 GCACCAGGCTAGTACTCATATTTAAAA 59.502 37.037 0.00 0.00 40.25 1.52
2312 2974 9.046296 CACCAGGCTAGTACTCATATTTAAAAG 57.954 37.037 0.00 0.00 0.00 2.27
2313 2975 8.211629 ACCAGGCTAGTACTCATATTTAAAAGG 58.788 37.037 0.00 0.00 0.00 3.11
2314 2976 8.211629 CCAGGCTAGTACTCATATTTAAAAGGT 58.788 37.037 0.00 0.00 0.00 3.50
2315 2977 9.262358 CAGGCTAGTACTCATATTTAAAAGGTC 57.738 37.037 0.00 0.00 0.00 3.85
2316 2978 8.142551 AGGCTAGTACTCATATTTAAAAGGTCG 58.857 37.037 0.00 0.00 0.00 4.79
2317 2979 7.924947 GGCTAGTACTCATATTTAAAAGGTCGT 59.075 37.037 0.00 0.00 0.00 4.34
2318 2980 9.956720 GCTAGTACTCATATTTAAAAGGTCGTA 57.043 33.333 0.00 0.00 0.00 3.43
2321 2983 9.257651 AGTACTCATATTTAAAAGGTCGTATGC 57.742 33.333 0.00 0.00 0.00 3.14
2322 2984 9.037737 GTACTCATATTTAAAAGGTCGTATGCA 57.962 33.333 0.00 0.00 0.00 3.96
2323 2985 8.677148 ACTCATATTTAAAAGGTCGTATGCAT 57.323 30.769 3.79 3.79 0.00 3.96
2324 2986 8.774586 ACTCATATTTAAAAGGTCGTATGCATC 58.225 33.333 0.19 0.00 0.00 3.91
2325 2987 8.094798 TCATATTTAAAAGGTCGTATGCATCC 57.905 34.615 0.19 0.00 0.00 3.51
2326 2988 4.868450 TTTAAAAGGTCGTATGCATCCG 57.132 40.909 0.19 3.04 0.00 4.18
2327 2989 2.396590 AAAAGGTCGTATGCATCCGT 57.603 45.000 11.64 0.00 0.00 4.69
2328 2990 3.530265 AAAAGGTCGTATGCATCCGTA 57.470 42.857 11.64 0.00 0.00 4.02
2329 2991 2.795175 AAGGTCGTATGCATCCGTAG 57.205 50.000 11.64 0.00 0.00 3.51
2330 2992 1.688772 AGGTCGTATGCATCCGTAGT 58.311 50.000 11.64 0.00 0.00 2.73
2331 2993 2.029623 AGGTCGTATGCATCCGTAGTT 58.970 47.619 11.64 0.00 0.00 2.24
2332 2994 2.124903 GGTCGTATGCATCCGTAGTTG 58.875 52.381 11.64 0.00 0.00 3.16
2333 2995 2.124903 GTCGTATGCATCCGTAGTTGG 58.875 52.381 11.64 0.00 0.00 3.77
2334 2996 1.752498 TCGTATGCATCCGTAGTTGGT 59.248 47.619 11.64 0.00 0.00 3.67
2335 2997 1.858458 CGTATGCATCCGTAGTTGGTG 59.142 52.381 0.19 0.00 0.00 4.17
2336 2998 1.597663 GTATGCATCCGTAGTTGGTGC 59.402 52.381 0.19 0.00 36.90 5.01
2337 2999 0.035534 ATGCATCCGTAGTTGGTGCA 60.036 50.000 0.17 0.17 44.34 4.57
2338 3000 0.673333 TGCATCCGTAGTTGGTGCAG 60.673 55.000 0.00 0.00 39.46 4.41
2339 3001 0.391130 GCATCCGTAGTTGGTGCAGA 60.391 55.000 0.00 0.00 36.60 4.26
2340 3002 1.645034 CATCCGTAGTTGGTGCAGAG 58.355 55.000 0.00 0.00 0.00 3.35
2341 3003 0.537188 ATCCGTAGTTGGTGCAGAGG 59.463 55.000 0.00 0.00 0.00 3.69
2342 3004 1.741770 CCGTAGTTGGTGCAGAGGC 60.742 63.158 0.00 0.00 41.68 4.70
2343 3005 1.741770 CGTAGTTGGTGCAGAGGCC 60.742 63.158 0.00 0.00 40.13 5.19
2344 3006 1.741770 GTAGTTGGTGCAGAGGCCG 60.742 63.158 0.00 0.00 40.13 6.13
2345 3007 2.954684 TAGTTGGTGCAGAGGCCGG 61.955 63.158 0.00 0.00 40.13 6.13
2346 3008 4.643387 GTTGGTGCAGAGGCCGGT 62.643 66.667 1.90 0.00 40.13 5.28
2347 3009 4.641645 TTGGTGCAGAGGCCGGTG 62.642 66.667 1.90 0.00 40.13 4.94
2349 3011 4.329545 GGTGCAGAGGCCGGTGAA 62.330 66.667 11.28 0.00 40.13 3.18
2350 3012 2.743928 GTGCAGAGGCCGGTGAAG 60.744 66.667 11.28 0.00 40.13 3.02
2351 3013 3.241530 TGCAGAGGCCGGTGAAGT 61.242 61.111 11.28 0.00 40.13 3.01
2352 3014 2.743928 GCAGAGGCCGGTGAAGTG 60.744 66.667 11.28 0.00 0.00 3.16
2353 3015 3.059982 CAGAGGCCGGTGAAGTGA 58.940 61.111 1.90 0.00 0.00 3.41
2354 3016 1.371183 CAGAGGCCGGTGAAGTGAA 59.629 57.895 1.90 0.00 0.00 3.18
2355 3017 0.250295 CAGAGGCCGGTGAAGTGAAA 60.250 55.000 1.90 0.00 0.00 2.69
2356 3018 0.693049 AGAGGCCGGTGAAGTGAAAT 59.307 50.000 1.90 0.00 0.00 2.17
2357 3019 1.073923 AGAGGCCGGTGAAGTGAAATT 59.926 47.619 1.90 0.00 0.00 1.82
2358 3020 1.468914 GAGGCCGGTGAAGTGAAATTC 59.531 52.381 1.90 0.00 0.00 2.17
2359 3021 1.073923 AGGCCGGTGAAGTGAAATTCT 59.926 47.619 1.90 0.00 0.00 2.40
2360 3022 1.468914 GGCCGGTGAAGTGAAATTCTC 59.531 52.381 1.90 0.00 0.00 2.87
2361 3023 1.468914 GCCGGTGAAGTGAAATTCTCC 59.531 52.381 1.90 2.36 38.76 3.71
2362 3024 2.084546 CCGGTGAAGTGAAATTCTCCC 58.915 52.381 0.00 0.00 38.88 4.30
2363 3025 2.084546 CGGTGAAGTGAAATTCTCCCC 58.915 52.381 6.14 0.00 38.88 4.81
2364 3026 2.447443 GGTGAAGTGAAATTCTCCCCC 58.553 52.381 1.19 0.00 37.03 5.40
2365 3027 2.225017 GGTGAAGTGAAATTCTCCCCCA 60.225 50.000 1.19 0.00 37.03 4.96
2366 3028 3.496331 GTGAAGTGAAATTCTCCCCCAA 58.504 45.455 0.00 0.00 0.00 4.12
2367 3029 4.089361 GTGAAGTGAAATTCTCCCCCAAT 58.911 43.478 0.00 0.00 0.00 3.16
2368 3030 4.528206 GTGAAGTGAAATTCTCCCCCAATT 59.472 41.667 0.00 0.00 0.00 2.32
2369 3031 5.012046 GTGAAGTGAAATTCTCCCCCAATTT 59.988 40.000 0.00 0.00 36.38 1.82
2370 3032 5.606329 TGAAGTGAAATTCTCCCCCAATTTT 59.394 36.000 0.00 0.00 34.30 1.82
2371 3033 6.101005 TGAAGTGAAATTCTCCCCCAATTTTT 59.899 34.615 0.00 0.00 34.30 1.94
2372 3034 5.868454 AGTGAAATTCTCCCCCAATTTTTG 58.132 37.500 0.00 0.00 34.30 2.44
2373 3035 4.455533 GTGAAATTCTCCCCCAATTTTTGC 59.544 41.667 0.00 0.00 34.30 3.68
2374 3036 3.333029 AATTCTCCCCCAATTTTTGCG 57.667 42.857 0.00 0.00 0.00 4.85
2375 3037 1.710816 TTCTCCCCCAATTTTTGCGT 58.289 45.000 0.00 0.00 0.00 5.24
2376 3038 1.253100 TCTCCCCCAATTTTTGCGTC 58.747 50.000 0.00 0.00 0.00 5.19
2377 3039 0.246360 CTCCCCCAATTTTTGCGTCC 59.754 55.000 0.00 0.00 0.00 4.79
2378 3040 0.178947 TCCCCCAATTTTTGCGTCCT 60.179 50.000 0.00 0.00 0.00 3.85
2379 3041 0.246360 CCCCCAATTTTTGCGTCCTC 59.754 55.000 0.00 0.00 0.00 3.71
2380 3042 0.246360 CCCCAATTTTTGCGTCCTCC 59.754 55.000 0.00 0.00 0.00 4.30
2381 3043 1.256812 CCCAATTTTTGCGTCCTCCT 58.743 50.000 0.00 0.00 0.00 3.69
2382 3044 1.202348 CCCAATTTTTGCGTCCTCCTC 59.798 52.381 0.00 0.00 0.00 3.71
2383 3045 1.885887 CCAATTTTTGCGTCCTCCTCA 59.114 47.619 0.00 0.00 0.00 3.86
2384 3046 2.351738 CCAATTTTTGCGTCCTCCTCAC 60.352 50.000 0.00 0.00 0.00 3.51
2385 3047 1.534729 ATTTTTGCGTCCTCCTCACC 58.465 50.000 0.00 0.00 0.00 4.02
2386 3048 0.536460 TTTTTGCGTCCTCCTCACCC 60.536 55.000 0.00 0.00 0.00 4.61
2387 3049 2.406002 TTTTGCGTCCTCCTCACCCC 62.406 60.000 0.00 0.00 0.00 4.95
2404 3066 4.817909 CCCGCCCCCTCTACCCTT 62.818 72.222 0.00 0.00 0.00 3.95
2405 3067 3.162154 CCGCCCCCTCTACCCTTC 61.162 72.222 0.00 0.00 0.00 3.46
2406 3068 3.162154 CGCCCCCTCTACCCTTCC 61.162 72.222 0.00 0.00 0.00 3.46
2407 3069 2.373100 GCCCCCTCTACCCTTCCT 59.627 66.667 0.00 0.00 0.00 3.36
2408 3070 1.766864 GCCCCCTCTACCCTTCCTC 60.767 68.421 0.00 0.00 0.00 3.71
2409 3071 1.457831 CCCCCTCTACCCTTCCTCG 60.458 68.421 0.00 0.00 0.00 4.63
2410 3072 2.134933 CCCCTCTACCCTTCCTCGC 61.135 68.421 0.00 0.00 0.00 5.03
2411 3073 2.134933 CCCTCTACCCTTCCTCGCC 61.135 68.421 0.00 0.00 0.00 5.54
2412 3074 2.491022 CCTCTACCCTTCCTCGCCG 61.491 68.421 0.00 0.00 0.00 6.46
2413 3075 3.140225 CTCTACCCTTCCTCGCCGC 62.140 68.421 0.00 0.00 0.00 6.53
2414 3076 4.222847 CTACCCTTCCTCGCCGCC 62.223 72.222 0.00 0.00 0.00 6.13
2428 3090 4.451150 CGCCGCCTGAGTTAGCCA 62.451 66.667 0.00 0.00 0.00 4.75
2429 3091 2.820037 GCCGCCTGAGTTAGCCAC 60.820 66.667 0.00 0.00 0.00 5.01
2430 3092 2.125106 CCGCCTGAGTTAGCCACC 60.125 66.667 0.00 0.00 0.00 4.61
2431 3093 2.509336 CGCCTGAGTTAGCCACCG 60.509 66.667 0.00 0.00 0.00 4.94
2432 3094 2.125106 GCCTGAGTTAGCCACCGG 60.125 66.667 0.00 0.00 0.00 5.28
2433 3095 2.584608 CCTGAGTTAGCCACCGGG 59.415 66.667 6.32 0.00 37.18 5.73
2464 3126 3.136123 CCAAGGATGGTGGCAGCG 61.136 66.667 12.58 0.00 42.18 5.18
2465 3127 3.136123 CAAGGATGGTGGCAGCGG 61.136 66.667 12.58 0.00 0.00 5.52
2466 3128 4.431131 AAGGATGGTGGCAGCGGG 62.431 66.667 12.58 0.00 0.00 6.13
2483 3145 4.357279 GGCCTCAGTTGCCCTGCT 62.357 66.667 0.00 0.00 43.33 4.24
2484 3146 2.282745 GCCTCAGTTGCCCTGCTT 60.283 61.111 0.00 0.00 41.25 3.91
2485 3147 2.338785 GCCTCAGTTGCCCTGCTTC 61.339 63.158 0.00 0.00 41.25 3.86
2486 3148 1.377994 CCTCAGTTGCCCTGCTTCT 59.622 57.895 0.00 0.00 41.25 2.85
2487 3149 0.959372 CCTCAGTTGCCCTGCTTCTG 60.959 60.000 0.00 0.00 41.25 3.02
2488 3150 1.584380 CTCAGTTGCCCTGCTTCTGC 61.584 60.000 0.00 0.00 41.25 4.26
2489 3151 2.670934 AGTTGCCCTGCTTCTGCG 60.671 61.111 0.00 0.00 43.34 5.18
2490 3152 2.980233 GTTGCCCTGCTTCTGCGT 60.980 61.111 0.00 0.00 43.34 5.24
2491 3153 2.203337 TTGCCCTGCTTCTGCGTT 60.203 55.556 0.00 0.00 43.34 4.84
2492 3154 1.072332 TTGCCCTGCTTCTGCGTTA 59.928 52.632 0.00 0.00 43.34 3.18
2493 3155 0.536233 TTGCCCTGCTTCTGCGTTAA 60.536 50.000 0.00 0.00 43.34 2.01
2494 3156 1.234615 TGCCCTGCTTCTGCGTTAAC 61.235 55.000 0.00 0.00 43.34 2.01
2495 3157 1.923227 GCCCTGCTTCTGCGTTAACC 61.923 60.000 0.00 0.00 43.34 2.85
2496 3158 1.305930 CCCTGCTTCTGCGTTAACCC 61.306 60.000 0.00 0.00 43.34 4.11
2497 3159 1.305930 CCTGCTTCTGCGTTAACCCC 61.306 60.000 0.00 0.00 43.34 4.95
2498 3160 1.635663 CTGCTTCTGCGTTAACCCCG 61.636 60.000 0.00 0.00 43.34 5.73
2499 3161 2.396157 GCTTCTGCGTTAACCCCGG 61.396 63.158 0.00 0.00 0.00 5.73
2500 3162 1.294138 CTTCTGCGTTAACCCCGGA 59.706 57.895 0.73 0.00 0.00 5.14
2501 3163 0.107848 CTTCTGCGTTAACCCCGGAT 60.108 55.000 0.73 0.00 0.00 4.18
2502 3164 0.108041 TTCTGCGTTAACCCCGGATC 60.108 55.000 0.73 0.00 0.00 3.36
2503 3165 0.974010 TCTGCGTTAACCCCGGATCT 60.974 55.000 0.73 0.00 0.00 2.75
2504 3166 0.810031 CTGCGTTAACCCCGGATCTG 60.810 60.000 0.73 0.00 0.00 2.90
2505 3167 1.523032 GCGTTAACCCCGGATCTGG 60.523 63.158 14.26 14.26 0.00 3.86
2506 3168 1.963464 GCGTTAACCCCGGATCTGGA 61.963 60.000 23.02 0.00 0.00 3.86
2507 3169 0.104304 CGTTAACCCCGGATCTGGAG 59.896 60.000 23.02 11.90 0.00 3.86
2508 3170 1.201424 GTTAACCCCGGATCTGGAGT 58.799 55.000 23.02 12.70 0.00 3.85
2509 3171 1.134491 GTTAACCCCGGATCTGGAGTG 60.134 57.143 23.02 12.10 0.00 3.51
2510 3172 0.689745 TAACCCCGGATCTGGAGTGG 60.690 60.000 23.02 16.66 0.00 4.00
2511 3173 3.866582 CCCCGGATCTGGAGTGGC 61.867 72.222 23.02 0.00 0.00 5.01
2512 3174 4.227134 CCCGGATCTGGAGTGGCG 62.227 72.222 23.02 0.00 0.00 5.69
2513 3175 4.227134 CCGGATCTGGAGTGGCGG 62.227 72.222 16.28 1.07 0.00 6.13
2514 3176 4.899239 CGGATCTGGAGTGGCGGC 62.899 72.222 0.00 0.00 0.00 6.53
2515 3177 3.474570 GGATCTGGAGTGGCGGCT 61.475 66.667 11.43 0.00 0.00 5.52
2516 3178 2.107953 GATCTGGAGTGGCGGCTC 59.892 66.667 11.43 6.75 34.89 4.70
2525 3187 4.675161 TGGCGGCTCCATTGGCAA 62.675 61.111 11.43 0.68 40.72 4.52
2526 3188 3.830192 GGCGGCTCCATTGGCAAG 61.830 66.667 5.96 0.00 34.01 4.01
2527 3189 3.830192 GCGGCTCCATTGGCAAGG 61.830 66.667 5.96 5.28 0.00 3.61
2528 3190 3.830192 CGGCTCCATTGGCAAGGC 61.830 66.667 6.33 3.22 0.00 4.35
2529 3191 2.681064 GGCTCCATTGGCAAGGCA 60.681 61.111 6.33 0.00 35.78 4.75
2530 3192 2.575461 GCTCCATTGGCAAGGCAC 59.425 61.111 6.33 0.00 0.00 5.01
2531 3193 2.879907 CTCCATTGGCAAGGCACG 59.120 61.111 6.33 0.00 0.00 5.34
2532 3194 1.973281 CTCCATTGGCAAGGCACGT 60.973 57.895 6.33 0.00 0.00 4.49
2533 3195 1.926511 CTCCATTGGCAAGGCACGTC 61.927 60.000 6.33 0.00 0.00 4.34
2534 3196 2.568090 CATTGGCAAGGCACGTCC 59.432 61.111 5.96 0.00 0.00 4.79
2535 3197 3.055719 ATTGGCAAGGCACGTCCG 61.056 61.111 5.96 0.00 40.77 4.79
2536 3198 3.545124 ATTGGCAAGGCACGTCCGA 62.545 57.895 5.96 0.00 40.77 4.55
2537 3199 4.980805 TGGCAAGGCACGTCCGAC 62.981 66.667 0.00 0.00 40.77 4.79
2538 3200 4.681978 GGCAAGGCACGTCCGACT 62.682 66.667 0.00 0.00 40.77 4.18
2539 3201 2.260434 GCAAGGCACGTCCGACTA 59.740 61.111 0.00 0.00 40.77 2.59
2540 3202 1.805945 GCAAGGCACGTCCGACTAG 60.806 63.158 0.00 0.00 40.77 2.57
2541 3203 1.805945 CAAGGCACGTCCGACTAGC 60.806 63.158 0.00 0.48 40.77 3.42
2542 3204 2.273179 AAGGCACGTCCGACTAGCA 61.273 57.895 12.34 0.00 40.77 3.49
2543 3205 2.202623 GGCACGTCCGACTAGCAG 60.203 66.667 12.34 0.00 0.00 4.24
2544 3206 2.567049 GCACGTCCGACTAGCAGT 59.433 61.111 7.07 0.00 0.00 4.40
2545 3207 1.514443 GCACGTCCGACTAGCAGTC 60.514 63.158 7.07 6.31 41.71 3.51
2546 3208 1.873863 CACGTCCGACTAGCAGTCA 59.126 57.895 14.09 0.00 45.30 3.41
2547 3209 0.452184 CACGTCCGACTAGCAGTCAT 59.548 55.000 14.09 0.00 45.30 3.06
2548 3210 0.452184 ACGTCCGACTAGCAGTCATG 59.548 55.000 14.09 0.00 45.30 3.07
2557 3219 3.807538 GCAGTCATGCGGGCAGTG 61.808 66.667 0.00 0.00 43.87 3.66
2558 3220 3.129502 CAGTCATGCGGGCAGTGG 61.130 66.667 0.00 0.00 0.00 4.00
2559 3221 3.321648 AGTCATGCGGGCAGTGGA 61.322 61.111 0.00 0.00 0.00 4.02
2560 3222 2.124570 GTCATGCGGGCAGTGGAT 60.125 61.111 0.00 0.00 0.00 3.41
2561 3223 2.182842 GTCATGCGGGCAGTGGATC 61.183 63.158 0.00 0.00 0.00 3.36
2562 3224 2.191375 CATGCGGGCAGTGGATCT 59.809 61.111 0.00 0.00 0.00 2.75
2563 3225 2.184830 CATGCGGGCAGTGGATCTG 61.185 63.158 0.00 0.00 46.12 2.90
2564 3226 3.411114 ATGCGGGCAGTGGATCTGG 62.411 63.158 0.00 0.00 43.78 3.86
2565 3227 4.101448 GCGGGCAGTGGATCTGGT 62.101 66.667 0.00 0.00 43.78 4.00
2566 3228 2.124983 CGGGCAGTGGATCTGGTG 60.125 66.667 0.00 0.00 43.78 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 6.497606 AGCTAGTTAGAGAACAAACCTAGGTT 59.502 38.462 21.96 21.96 38.10 3.50
9 10 6.017830 AGCTAGTTAGAGAACAAACCTAGGT 58.982 40.000 9.21 9.21 38.10 3.08
10 11 6.532988 AGCTAGTTAGAGAACAAACCTAGG 57.467 41.667 7.41 7.41 38.10 3.02
11 12 8.283699 ACTAGCTAGTTAGAGAACAAACCTAG 57.716 38.462 20.95 5.41 38.10 3.02
12 13 9.171877 GTACTAGCTAGTTAGAGAACAAACCTA 57.828 37.037 30.40 4.78 38.10 3.08
13 14 7.889600 AGTACTAGCTAGTTAGAGAACAAACCT 59.110 37.037 30.40 3.76 38.10 3.50
14 15 8.054152 AGTACTAGCTAGTTAGAGAACAAACC 57.946 38.462 30.40 4.97 38.10 3.27
15 16 8.183536 GGAGTACTAGCTAGTTAGAGAACAAAC 58.816 40.741 30.40 17.77 38.10 2.93
16 17 7.338957 GGGAGTACTAGCTAGTTAGAGAACAAA 59.661 40.741 30.40 6.64 38.10 2.83
17 18 6.827762 GGGAGTACTAGCTAGTTAGAGAACAA 59.172 42.308 30.40 7.40 38.10 2.83
18 19 6.158344 AGGGAGTACTAGCTAGTTAGAGAACA 59.842 42.308 30.40 8.15 38.10 3.18
19 20 6.594744 AGGGAGTACTAGCTAGTTAGAGAAC 58.405 44.000 30.40 20.48 37.73 3.01
20 21 6.183361 GGAGGGAGTACTAGCTAGTTAGAGAA 60.183 46.154 30.40 9.68 37.73 2.87
21 22 5.307716 GGAGGGAGTACTAGCTAGTTAGAGA 59.692 48.000 30.40 10.44 37.73 3.10
29 30 2.446285 GGGAAGGAGGGAGTACTAGCTA 59.554 54.545 0.00 0.00 0.00 3.32
86 87 9.243637 GAAAAACATAGTCAAAGTTATGCAACA 57.756 29.630 0.00 0.00 37.10 3.33
87 88 9.243637 TGAAAAACATAGTCAAAGTTATGCAAC 57.756 29.630 0.00 0.00 31.88 4.17
159 160 4.541779 TCGTTGTATTCGCTTTGCAATTT 58.458 34.783 0.00 0.00 0.00 1.82
160 161 4.153958 TCGTTGTATTCGCTTTGCAATT 57.846 36.364 0.00 0.00 0.00 2.32
161 162 3.822594 TCGTTGTATTCGCTTTGCAAT 57.177 38.095 0.00 0.00 0.00 3.56
168 172 7.372714 TGTATAATGGTATCGTTGTATTCGCT 58.627 34.615 0.00 0.00 0.00 4.93
169 173 7.571089 TGTATAATGGTATCGTTGTATTCGC 57.429 36.000 0.00 0.00 0.00 4.70
214 219 7.381408 TGCACGACTTTGAGCACTAATATATAC 59.619 37.037 0.00 0.00 30.36 1.47
227 232 5.277825 TGGTTTTTAATGCACGACTTTGAG 58.722 37.500 0.00 0.00 0.00 3.02
286 291 1.205893 CCTCTGCCAACCAGTACTCTC 59.794 57.143 0.00 0.00 42.38 3.20
318 323 1.740332 TTGAGCTGTTGGTCGGACGA 61.740 55.000 0.00 0.00 43.09 4.20
330 335 7.375280 CGCAGAAATGTATAGAAAATTGAGCTG 59.625 37.037 0.00 0.00 0.00 4.24
340 345 9.472361 GGTTATTAGTCGCAGAAATGTATAGAA 57.528 33.333 0.00 0.00 39.69 2.10
346 351 3.869246 CGGGTTATTAGTCGCAGAAATGT 59.131 43.478 0.00 0.00 39.69 2.71
352 357 0.748450 TCCCGGGTTATTAGTCGCAG 59.252 55.000 22.86 0.00 0.00 5.18
353 358 1.069513 CATCCCGGGTTATTAGTCGCA 59.930 52.381 22.86 0.00 0.00 5.10
354 359 1.607251 CCATCCCGGGTTATTAGTCGC 60.607 57.143 22.86 0.00 0.00 5.19
355 360 2.450609 CCATCCCGGGTTATTAGTCG 57.549 55.000 22.86 0.00 0.00 4.18
366 371 0.105658 TTCTACTCTCCCCATCCCGG 60.106 60.000 0.00 0.00 0.00 5.73
375 380 7.631161 GCCTAAGTAAGTCCTTTTCTACTCTCC 60.631 44.444 0.00 0.00 0.00 3.71
380 385 7.104290 ACATGCCTAAGTAAGTCCTTTTCTAC 58.896 38.462 0.00 0.00 0.00 2.59
439 444 7.862274 AGATACCTCCTGTAATCATTGATCA 57.138 36.000 0.00 0.00 31.94 2.92
502 507 6.017687 GGAGTACTAGCTAGCTAGAGAACAAC 60.018 46.154 43.93 31.50 46.56 3.32
529 534 4.816385 CAGCGCCTTATATTTTCAGAAGGA 59.184 41.667 2.29 0.00 40.88 3.36
530 535 4.816385 TCAGCGCCTTATATTTTCAGAAGG 59.184 41.667 2.29 0.00 41.26 3.46
536 543 9.846248 AAATATCAATCAGCGCCTTATATTTTC 57.154 29.630 2.29 0.00 28.60 2.29
573 580 7.170320 ACGTGAAAATTATAGTCAAAGTCGTGT 59.830 33.333 0.00 0.00 0.00 4.49
654 703 7.681939 AATGGTATCGTTGTATTTGTCTTGT 57.318 32.000 0.00 0.00 0.00 3.16
717 995 3.684103 TTTTGACGCACGAATTTGACT 57.316 38.095 0.00 0.00 0.00 3.41
731 1009 1.526464 CGGCTTTGCATGGTTTTTGAC 59.474 47.619 0.00 0.00 0.00 3.18
751 1029 7.202016 TCTTCCCAAAATATAATGCGTGATC 57.798 36.000 0.00 0.00 0.00 2.92
787 1065 2.113986 GTTGCACCCTCTGCCAGT 59.886 61.111 0.00 0.00 46.51 4.00
788 1066 2.674380 GGTTGCACCCTCTGCCAG 60.674 66.667 0.00 0.00 46.51 4.85
808 1093 1.112916 TGAGCTGTTGGTCAGACGGA 61.113 55.000 0.00 0.00 46.27 4.69
949 1262 4.750098 AGACTTCAGACCAATGTACAAACG 59.250 41.667 0.00 0.00 0.00 3.60
958 1271 4.590647 TCAGACTTGAGACTTCAGACCAAT 59.409 41.667 0.00 0.00 34.15 3.16
1510 1823 4.914504 CGATCCAGACTTATGTTCATCTCG 59.085 45.833 0.00 0.00 0.00 4.04
1527 1840 4.402528 CGCCCACAACCCGATCCA 62.403 66.667 0.00 0.00 0.00 3.41
1581 1894 1.250328 TCTGCCAAGTTGGATGCTTG 58.750 50.000 26.52 7.81 40.96 4.01
1582 1895 1.999648 TTCTGCCAAGTTGGATGCTT 58.000 45.000 26.52 0.00 40.96 3.91
1692 2350 7.823310 CGATCTGGAATCATTTCTGGATAATCT 59.177 37.037 0.00 0.00 32.16 2.40
1697 2355 5.557576 TCGATCTGGAATCATTTCTGGAT 57.442 39.130 0.00 0.00 32.16 3.41
1733 2391 0.539986 TCGCTTGTCTTATGTCCCCC 59.460 55.000 0.00 0.00 0.00 5.40
1741 2399 3.968649 ACGTTAACTGTCGCTTGTCTTA 58.031 40.909 3.71 0.00 0.00 2.10
1750 2408 7.215844 GTCATAGTTTTGTACGTTAACTGTCG 58.784 38.462 13.98 0.00 34.26 4.35
1787 2445 6.182627 TCCATCTTCATGTAAATCAAGCTGT 58.817 36.000 0.00 0.00 0.00 4.40
1804 2462 0.250901 AGGCAACGCAACTCCATCTT 60.251 50.000 0.00 0.00 46.39 2.40
1815 2473 2.484264 AGTTTAGTTCATCAGGCAACGC 59.516 45.455 0.00 0.00 46.39 4.84
1832 2490 9.398170 CAAGATGTTTGATAATTTGACGAGTTT 57.602 29.630 0.00 0.00 0.00 2.66
1895 2554 3.627395 TGCGTATTTGATCAGGGAGTT 57.373 42.857 0.00 0.00 0.00 3.01
1897 2556 3.310774 CACTTGCGTATTTGATCAGGGAG 59.689 47.826 0.00 0.00 0.00 4.30
1903 2564 6.314018 TCACAAATCACTTGCGTATTTGATC 58.686 36.000 12.51 0.00 41.14 2.92
1912 2573 3.051327 TGCAAATCACAAATCACTTGCG 58.949 40.909 0.00 0.00 41.54 4.85
1919 2580 6.904954 CAAATTTGCTGCAAATCACAAATC 57.095 33.333 33.30 0.00 42.32 2.17
1942 2603 6.073003 GGAATATTACTACTGAATGTGGCAGC 60.073 42.308 0.00 0.00 36.86 5.25
1944 2605 5.989168 CGGAATATTACTACTGAATGTGGCA 59.011 40.000 0.00 0.00 0.00 4.92
1966 2628 3.146066 TGACTTGTTGAAAATCCTCCGG 58.854 45.455 0.00 0.00 0.00 5.14
1987 2649 0.178987 ACGACTCTGAGTGTGGTCCT 60.179 55.000 16.28 0.00 0.00 3.85
1989 2651 0.952280 TGACGACTCTGAGTGTGGTC 59.048 55.000 16.28 18.65 41.41 4.02
2017 2679 3.582242 AACCATGCCCGCACCATGA 62.582 57.895 9.14 0.00 41.97 3.07
2043 2705 1.171308 CAAATCCAGGTCAGTGCTGG 58.829 55.000 9.84 9.84 39.48 4.85
2049 2711 1.619654 TTGTGCCAAATCCAGGTCAG 58.380 50.000 0.00 0.00 0.00 3.51
2056 2718 5.036737 CGAATCAACTATTGTGCCAAATCC 58.963 41.667 0.00 0.00 0.00 3.01
2079 2741 8.325046 AGAGGAAGAGGTATATAAAATGCCATC 58.675 37.037 0.00 0.00 0.00 3.51
2103 2765 3.141398 GACAGTTTCATGCAAGACCAGA 58.859 45.455 0.00 0.00 0.00 3.86
2112 2774 4.217118 AGTGGATTTGAGACAGTTTCATGC 59.783 41.667 0.00 0.00 0.00 4.06
2118 2780 2.880890 GTGCAGTGGATTTGAGACAGTT 59.119 45.455 0.00 0.00 0.00 3.16
2135 2797 2.362397 TGTTTCCGCAAAATAAGGTGCA 59.638 40.909 0.00 0.00 40.94 4.57
2142 2804 2.609244 GCAAGCCTGTTTCCGCAAAATA 60.609 45.455 0.00 0.00 0.00 1.40
2150 2812 0.238553 GTTCTCGCAAGCCTGTTTCC 59.761 55.000 0.00 0.00 37.18 3.13
2155 2817 1.165907 TTGTGGTTCTCGCAAGCCTG 61.166 55.000 0.00 0.00 40.53 4.85
2156 2818 1.148273 TTGTGGTTCTCGCAAGCCT 59.852 52.632 0.00 0.00 40.53 4.58
2157 2819 1.282875 GTTGTGGTTCTCGCAAGCC 59.717 57.895 0.00 0.00 45.30 4.35
2158 2820 0.380378 TTGTTGTGGTTCTCGCAAGC 59.620 50.000 0.00 0.00 45.30 4.01
2159 2821 1.594518 CGTTGTTGTGGTTCTCGCAAG 60.595 52.381 0.00 0.00 45.30 4.01
2160 2822 0.375454 CGTTGTTGTGGTTCTCGCAA 59.625 50.000 0.00 0.00 42.86 4.85
2161 2823 0.741574 ACGTTGTTGTGGTTCTCGCA 60.742 50.000 0.00 0.00 0.00 5.10
2162 2824 0.375803 AACGTTGTTGTGGTTCTCGC 59.624 50.000 0.00 0.00 0.00 5.03
2163 2825 2.817538 AAACGTTGTTGTGGTTCTCG 57.182 45.000 0.00 0.00 0.00 4.04
2164 2826 4.086199 TGAAAACGTTGTTGTGGTTCTC 57.914 40.909 0.00 0.00 0.00 2.87
2165 2827 4.506886 TTGAAAACGTTGTTGTGGTTCT 57.493 36.364 0.00 0.00 0.00 3.01
2166 2828 5.346281 TCATTTGAAAACGTTGTTGTGGTTC 59.654 36.000 0.00 0.15 0.00 3.62
2167 2829 5.230942 TCATTTGAAAACGTTGTTGTGGTT 58.769 33.333 0.00 0.00 0.00 3.67
2168 2830 4.810790 TCATTTGAAAACGTTGTTGTGGT 58.189 34.783 0.00 0.00 0.00 4.16
2169 2831 4.259770 GCTCATTTGAAAACGTTGTTGTGG 60.260 41.667 0.00 0.00 0.00 4.17
2170 2832 4.259770 GGCTCATTTGAAAACGTTGTTGTG 60.260 41.667 0.00 0.00 0.00 3.33
2171 2833 3.862845 GGCTCATTTGAAAACGTTGTTGT 59.137 39.130 0.00 0.00 0.00 3.32
2172 2834 4.111916 AGGCTCATTTGAAAACGTTGTTG 58.888 39.130 0.00 0.00 0.00 3.33
2173 2835 4.385358 AGGCTCATTTGAAAACGTTGTT 57.615 36.364 0.00 0.00 0.00 2.83
2174 2836 4.556699 GCTAGGCTCATTTGAAAACGTTGT 60.557 41.667 0.00 0.00 0.00 3.32
2175 2837 3.914364 GCTAGGCTCATTTGAAAACGTTG 59.086 43.478 0.00 0.00 0.00 4.10
2176 2838 3.821033 AGCTAGGCTCATTTGAAAACGTT 59.179 39.130 0.00 0.00 30.62 3.99
2177 2839 3.412386 AGCTAGGCTCATTTGAAAACGT 58.588 40.909 0.00 0.00 30.62 3.99
2190 2852 0.326264 CCAACCAGTTGAGCTAGGCT 59.674 55.000 12.06 0.00 42.93 4.58
2191 2853 0.678048 CCCAACCAGTTGAGCTAGGC 60.678 60.000 12.06 0.00 42.93 3.93
2192 2854 0.035056 CCCCAACCAGTTGAGCTAGG 60.035 60.000 12.06 4.24 42.93 3.02
2193 2855 0.035056 CCCCCAACCAGTTGAGCTAG 60.035 60.000 12.06 0.00 42.93 3.42
2194 2856 0.474854 TCCCCCAACCAGTTGAGCTA 60.475 55.000 12.06 0.00 42.93 3.32
2195 2857 1.774217 TCCCCCAACCAGTTGAGCT 60.774 57.895 12.06 0.00 42.93 4.09
2196 2858 1.303643 CTCCCCCAACCAGTTGAGC 60.304 63.158 12.06 0.00 42.93 4.26
2197 2859 0.250901 CACTCCCCCAACCAGTTGAG 60.251 60.000 12.06 4.06 42.93 3.02
2198 2860 1.715019 CCACTCCCCCAACCAGTTGA 61.715 60.000 12.06 0.00 42.93 3.18
2199 2861 1.228552 CCACTCCCCCAACCAGTTG 60.229 63.158 3.47 3.47 40.13 3.16
2200 2862 0.776080 ATCCACTCCCCCAACCAGTT 60.776 55.000 0.00 0.00 0.00 3.16
2201 2863 0.120377 TATCCACTCCCCCAACCAGT 59.880 55.000 0.00 0.00 0.00 4.00
2202 2864 1.522900 ATATCCACTCCCCCAACCAG 58.477 55.000 0.00 0.00 0.00 4.00
2203 2865 2.293924 TGTATATCCACTCCCCCAACCA 60.294 50.000 0.00 0.00 0.00 3.67
2204 2866 2.414612 TGTATATCCACTCCCCCAACC 58.585 52.381 0.00 0.00 0.00 3.77
2205 2867 4.204799 GTTTGTATATCCACTCCCCCAAC 58.795 47.826 0.00 0.00 0.00 3.77
2206 2868 3.203487 GGTTTGTATATCCACTCCCCCAA 59.797 47.826 0.00 0.00 0.00 4.12
2207 2869 2.781174 GGTTTGTATATCCACTCCCCCA 59.219 50.000 0.00 0.00 0.00 4.96
2208 2870 2.107726 GGGTTTGTATATCCACTCCCCC 59.892 54.545 0.00 0.00 0.00 5.40
2209 2871 2.781174 TGGGTTTGTATATCCACTCCCC 59.219 50.000 5.06 0.00 33.40 4.81
2210 2872 4.204799 GTTGGGTTTGTATATCCACTCCC 58.795 47.826 0.00 0.00 34.77 4.30
2211 2873 4.638865 GTGTTGGGTTTGTATATCCACTCC 59.361 45.833 0.00 0.00 0.00 3.85
2212 2874 4.638865 GGTGTTGGGTTTGTATATCCACTC 59.361 45.833 0.00 0.00 0.00 3.51
2213 2875 4.291249 AGGTGTTGGGTTTGTATATCCACT 59.709 41.667 0.00 0.00 0.00 4.00
2214 2876 4.595986 AGGTGTTGGGTTTGTATATCCAC 58.404 43.478 0.00 0.00 0.00 4.02
2215 2877 4.624364 CGAGGTGTTGGGTTTGTATATCCA 60.624 45.833 0.00 0.00 0.00 3.41
2216 2878 3.875134 CGAGGTGTTGGGTTTGTATATCC 59.125 47.826 0.00 0.00 0.00 2.59
2217 2879 3.875134 CCGAGGTGTTGGGTTTGTATATC 59.125 47.826 0.00 0.00 0.00 1.63
2218 2880 3.264964 ACCGAGGTGTTGGGTTTGTATAT 59.735 43.478 0.00 0.00 33.55 0.86
2219 2881 2.638855 ACCGAGGTGTTGGGTTTGTATA 59.361 45.455 0.00 0.00 33.55 1.47
2220 2882 1.422402 ACCGAGGTGTTGGGTTTGTAT 59.578 47.619 0.00 0.00 33.55 2.29
2221 2883 0.838608 ACCGAGGTGTTGGGTTTGTA 59.161 50.000 0.00 0.00 33.55 2.41
2222 2884 0.033894 AACCGAGGTGTTGGGTTTGT 60.034 50.000 0.00 0.00 44.52 2.83
2223 2885 0.666374 GAACCGAGGTGTTGGGTTTG 59.334 55.000 0.00 0.00 46.54 2.93
2224 2886 0.256464 TGAACCGAGGTGTTGGGTTT 59.744 50.000 0.00 0.00 46.54 3.27
2226 2888 0.256464 TTTGAACCGAGGTGTTGGGT 59.744 50.000 0.00 0.00 39.96 4.51
2227 2889 1.539827 GATTTGAACCGAGGTGTTGGG 59.460 52.381 0.00 0.00 0.00 4.12
2228 2890 1.539827 GGATTTGAACCGAGGTGTTGG 59.460 52.381 0.00 0.00 0.00 3.77
2229 2891 2.484264 GAGGATTTGAACCGAGGTGTTG 59.516 50.000 0.00 0.00 0.00 3.33
2230 2892 2.105821 TGAGGATTTGAACCGAGGTGTT 59.894 45.455 0.00 0.00 0.00 3.32
2231 2893 1.697432 TGAGGATTTGAACCGAGGTGT 59.303 47.619 0.00 0.00 0.00 4.16
2232 2894 2.076863 GTGAGGATTTGAACCGAGGTG 58.923 52.381 0.00 0.00 0.00 4.00
2233 2895 1.337823 CGTGAGGATTTGAACCGAGGT 60.338 52.381 0.00 0.00 0.00 3.85
2234 2896 1.359848 CGTGAGGATTTGAACCGAGG 58.640 55.000 0.00 0.00 0.00 4.63
2248 2910 1.134788 ACCTAAATTCGCCTCCGTGAG 60.135 52.381 0.00 0.00 35.54 3.51
2249 2911 0.899720 ACCTAAATTCGCCTCCGTGA 59.100 50.000 0.00 0.00 35.54 4.35
2250 2912 1.664151 GAACCTAAATTCGCCTCCGTG 59.336 52.381 0.00 0.00 35.54 4.94
2251 2913 1.406477 GGAACCTAAATTCGCCTCCGT 60.406 52.381 0.00 0.00 35.54 4.69
2252 2914 1.296727 GGAACCTAAATTCGCCTCCG 58.703 55.000 0.00 0.00 0.00 4.63
2253 2915 2.413310 TGGAACCTAAATTCGCCTCC 57.587 50.000 0.00 0.00 0.00 4.30
2254 2916 4.983671 AATTGGAACCTAAATTCGCCTC 57.016 40.909 0.00 0.00 0.00 4.70
2255 2917 7.342026 AGAATAAATTGGAACCTAAATTCGCCT 59.658 33.333 0.00 0.00 0.00 5.52
2256 2918 7.489160 AGAATAAATTGGAACCTAAATTCGCC 58.511 34.615 0.00 0.00 0.00 5.54
2257 2919 8.807581 CAAGAATAAATTGGAACCTAAATTCGC 58.192 33.333 0.00 0.00 0.00 4.70
2260 2922 9.875691 GCTCAAGAATAAATTGGAACCTAAATT 57.124 29.630 0.00 0.00 0.00 1.82
2261 2923 9.034800 TGCTCAAGAATAAATTGGAACCTAAAT 57.965 29.630 0.00 0.00 0.00 1.40
2262 2924 8.303876 GTGCTCAAGAATAAATTGGAACCTAAA 58.696 33.333 0.00 0.00 0.00 1.85
2263 2925 7.093945 GGTGCTCAAGAATAAATTGGAACCTAA 60.094 37.037 0.00 0.00 0.00 2.69
2264 2926 6.377146 GGTGCTCAAGAATAAATTGGAACCTA 59.623 38.462 0.00 0.00 0.00 3.08
2265 2927 5.185828 GGTGCTCAAGAATAAATTGGAACCT 59.814 40.000 0.00 0.00 0.00 3.50
2266 2928 5.047377 TGGTGCTCAAGAATAAATTGGAACC 60.047 40.000 0.00 0.00 0.00 3.62
2267 2929 6.024552 TGGTGCTCAAGAATAAATTGGAAC 57.975 37.500 0.00 0.00 0.00 3.62
2268 2930 5.185635 CCTGGTGCTCAAGAATAAATTGGAA 59.814 40.000 0.00 0.00 0.00 3.53
2269 2931 4.706476 CCTGGTGCTCAAGAATAAATTGGA 59.294 41.667 0.00 0.00 0.00 3.53
2270 2932 4.678840 GCCTGGTGCTCAAGAATAAATTGG 60.679 45.833 0.00 0.00 36.87 3.16
2271 2933 4.427312 GCCTGGTGCTCAAGAATAAATTG 58.573 43.478 0.00 0.00 36.87 2.32
2272 2934 4.725790 GCCTGGTGCTCAAGAATAAATT 57.274 40.909 0.00 0.00 36.87 1.82
2285 2947 4.608948 AATATGAGTACTAGCCTGGTGC 57.391 45.455 0.00 0.00 41.71 5.01
2286 2948 8.958119 TTTTAAATATGAGTACTAGCCTGGTG 57.042 34.615 0.00 0.00 0.00 4.17
2287 2949 8.211629 CCTTTTAAATATGAGTACTAGCCTGGT 58.788 37.037 0.00 0.00 0.00 4.00
2288 2950 8.211629 ACCTTTTAAATATGAGTACTAGCCTGG 58.788 37.037 0.00 0.00 0.00 4.45
2289 2951 9.262358 GACCTTTTAAATATGAGTACTAGCCTG 57.738 37.037 0.00 0.00 0.00 4.85
2290 2952 8.142551 CGACCTTTTAAATATGAGTACTAGCCT 58.857 37.037 0.00 0.00 0.00 4.58
2291 2953 7.924947 ACGACCTTTTAAATATGAGTACTAGCC 59.075 37.037 0.00 0.00 0.00 3.93
2292 2954 8.868635 ACGACCTTTTAAATATGAGTACTAGC 57.131 34.615 0.00 0.00 0.00 3.42
2295 2957 9.257651 GCATACGACCTTTTAAATATGAGTACT 57.742 33.333 0.00 0.00 0.00 2.73
2296 2958 9.037737 TGCATACGACCTTTTAAATATGAGTAC 57.962 33.333 7.95 0.00 0.00 2.73
2297 2959 9.772973 ATGCATACGACCTTTTAAATATGAGTA 57.227 29.630 0.00 3.32 0.00 2.59
2298 2960 8.677148 ATGCATACGACCTTTTAAATATGAGT 57.323 30.769 0.00 1.54 0.00 3.41
2299 2961 8.230486 GGATGCATACGACCTTTTAAATATGAG 58.770 37.037 0.00 0.00 0.00 2.90
2300 2962 7.095397 CGGATGCATACGACCTTTTAAATATGA 60.095 37.037 27.53 0.00 35.77 2.15
2301 2963 7.015289 CGGATGCATACGACCTTTTAAATATG 58.985 38.462 27.53 0.00 35.77 1.78
2302 2964 6.708949 ACGGATGCATACGACCTTTTAAATAT 59.291 34.615 36.90 7.39 37.61 1.28
2303 2965 6.050432 ACGGATGCATACGACCTTTTAAATA 58.950 36.000 36.90 0.00 37.61 1.40
2304 2966 4.879545 ACGGATGCATACGACCTTTTAAAT 59.120 37.500 36.90 8.18 37.61 1.40
2305 2967 4.255301 ACGGATGCATACGACCTTTTAAA 58.745 39.130 36.90 0.00 37.61 1.52
2306 2968 3.864243 ACGGATGCATACGACCTTTTAA 58.136 40.909 36.90 0.00 37.61 1.52
2307 2969 3.530265 ACGGATGCATACGACCTTTTA 57.470 42.857 36.90 0.00 37.61 1.52
2308 2970 2.396590 ACGGATGCATACGACCTTTT 57.603 45.000 36.90 11.42 37.61 2.27
2309 2971 2.429610 ACTACGGATGCATACGACCTTT 59.570 45.455 36.90 17.13 37.61 3.11
2310 2972 2.029623 ACTACGGATGCATACGACCTT 58.970 47.619 36.90 17.52 37.61 3.50
2311 2973 1.688772 ACTACGGATGCATACGACCT 58.311 50.000 36.90 17.91 37.61 3.85
2312 2974 2.124903 CAACTACGGATGCATACGACC 58.875 52.381 36.90 15.13 37.61 4.79
2313 2975 2.124903 CCAACTACGGATGCATACGAC 58.875 52.381 36.90 6.43 37.61 4.34
2314 2976 1.752498 ACCAACTACGGATGCATACGA 59.248 47.619 36.90 19.11 37.61 3.43
2315 2977 1.858458 CACCAACTACGGATGCATACG 59.142 52.381 29.46 29.46 40.74 3.06
2316 2978 1.597663 GCACCAACTACGGATGCATAC 59.402 52.381 0.00 0.00 36.30 2.39
2317 2979 1.208293 TGCACCAACTACGGATGCATA 59.792 47.619 0.00 0.00 41.18 3.14
2318 2980 0.035534 TGCACCAACTACGGATGCAT 60.036 50.000 0.00 0.00 41.18 3.96
2319 2981 0.673333 CTGCACCAACTACGGATGCA 60.673 55.000 0.00 0.00 43.70 3.96
2320 2982 0.391130 TCTGCACCAACTACGGATGC 60.391 55.000 0.00 0.00 36.81 3.91
2321 2983 1.645034 CTCTGCACCAACTACGGATG 58.355 55.000 0.00 0.00 0.00 3.51
2322 2984 0.537188 CCTCTGCACCAACTACGGAT 59.463 55.000 0.00 0.00 0.00 4.18
2323 2985 1.972198 CCTCTGCACCAACTACGGA 59.028 57.895 0.00 0.00 0.00 4.69
2324 2986 1.741770 GCCTCTGCACCAACTACGG 60.742 63.158 0.00 0.00 37.47 4.02
2325 2987 1.741770 GGCCTCTGCACCAACTACG 60.742 63.158 0.00 0.00 40.13 3.51
2326 2988 1.741770 CGGCCTCTGCACCAACTAC 60.742 63.158 0.00 0.00 40.13 2.73
2327 2989 2.662596 CGGCCTCTGCACCAACTA 59.337 61.111 0.00 0.00 40.13 2.24
2328 2990 4.335647 CCGGCCTCTGCACCAACT 62.336 66.667 0.00 0.00 40.13 3.16
2329 2991 4.643387 ACCGGCCTCTGCACCAAC 62.643 66.667 0.00 0.00 40.13 3.77
2330 2992 4.641645 CACCGGCCTCTGCACCAA 62.642 66.667 0.00 0.00 40.13 3.67
2332 2994 4.329545 TTCACCGGCCTCTGCACC 62.330 66.667 0.00 0.00 40.13 5.01
2333 2995 2.743928 CTTCACCGGCCTCTGCAC 60.744 66.667 0.00 0.00 40.13 4.57
2334 2996 3.241530 ACTTCACCGGCCTCTGCA 61.242 61.111 0.00 0.00 40.13 4.41
2335 2997 2.731691 TTCACTTCACCGGCCTCTGC 62.732 60.000 0.00 0.00 0.00 4.26
2336 2998 0.250295 TTTCACTTCACCGGCCTCTG 60.250 55.000 0.00 0.00 0.00 3.35
2337 2999 0.693049 ATTTCACTTCACCGGCCTCT 59.307 50.000 0.00 0.00 0.00 3.69
2338 3000 1.468914 GAATTTCACTTCACCGGCCTC 59.531 52.381 0.00 0.00 0.00 4.70
2339 3001 1.073923 AGAATTTCACTTCACCGGCCT 59.926 47.619 0.00 0.00 0.00 5.19
2340 3002 1.468914 GAGAATTTCACTTCACCGGCC 59.531 52.381 0.00 0.00 0.00 6.13
2341 3003 1.468914 GGAGAATTTCACTTCACCGGC 59.531 52.381 0.00 0.00 0.00 6.13
2342 3004 2.084546 GGGAGAATTTCACTTCACCGG 58.915 52.381 0.00 0.00 36.92 5.28
2343 3005 2.084546 GGGGAGAATTTCACTTCACCG 58.915 52.381 0.00 0.00 36.92 4.94
2344 3006 2.225017 TGGGGGAGAATTTCACTTCACC 60.225 50.000 0.00 0.00 36.98 4.02
2345 3007 3.154827 TGGGGGAGAATTTCACTTCAC 57.845 47.619 0.00 0.00 0.00 3.18
2346 3008 3.893753 TTGGGGGAGAATTTCACTTCA 57.106 42.857 0.00 0.00 0.00 3.02
2347 3009 5.745312 AAATTGGGGGAGAATTTCACTTC 57.255 39.130 0.00 0.00 28.86 3.01
2348 3010 6.298361 CAAAAATTGGGGGAGAATTTCACTT 58.702 36.000 0.00 0.00 32.94 3.16
2349 3011 5.745770 GCAAAAATTGGGGGAGAATTTCACT 60.746 40.000 0.00 0.00 32.94 3.41
2350 3012 4.455533 GCAAAAATTGGGGGAGAATTTCAC 59.544 41.667 0.00 0.00 32.94 3.18
2351 3013 4.650734 GCAAAAATTGGGGGAGAATTTCA 58.349 39.130 0.00 0.00 32.94 2.69
2352 3014 3.684305 CGCAAAAATTGGGGGAGAATTTC 59.316 43.478 0.00 0.00 39.66 2.17
2353 3015 3.072330 ACGCAAAAATTGGGGGAGAATTT 59.928 39.130 11.16 0.00 46.69 1.82
2354 3016 2.637382 ACGCAAAAATTGGGGGAGAATT 59.363 40.909 11.16 0.00 46.69 2.17
2355 3017 2.233676 GACGCAAAAATTGGGGGAGAAT 59.766 45.455 11.16 0.00 46.69 2.40
2356 3018 1.616374 GACGCAAAAATTGGGGGAGAA 59.384 47.619 11.16 0.00 46.69 2.87
2357 3019 1.253100 GACGCAAAAATTGGGGGAGA 58.747 50.000 11.16 0.00 46.69 3.71
2358 3020 0.246360 GGACGCAAAAATTGGGGGAG 59.754 55.000 11.16 0.00 46.69 4.30
2359 3021 0.178947 AGGACGCAAAAATTGGGGGA 60.179 50.000 11.16 0.00 46.69 4.81
2360 3022 0.246360 GAGGACGCAAAAATTGGGGG 59.754 55.000 11.16 0.00 46.69 5.40
2361 3023 0.246360 GGAGGACGCAAAAATTGGGG 59.754 55.000 11.16 0.00 46.69 4.96
2363 3025 1.885887 TGAGGAGGACGCAAAAATTGG 59.114 47.619 0.00 0.00 0.00 3.16
2364 3026 2.351738 GGTGAGGAGGACGCAAAAATTG 60.352 50.000 0.00 0.00 0.00 2.32
2365 3027 1.886542 GGTGAGGAGGACGCAAAAATT 59.113 47.619 0.00 0.00 0.00 1.82
2366 3028 1.534729 GGTGAGGAGGACGCAAAAAT 58.465 50.000 0.00 0.00 0.00 1.82
2367 3029 0.536460 GGGTGAGGAGGACGCAAAAA 60.536 55.000 0.00 0.00 0.00 1.94
2368 3030 1.072505 GGGTGAGGAGGACGCAAAA 59.927 57.895 0.00 0.00 0.00 2.44
2369 3031 2.747686 GGGTGAGGAGGACGCAAA 59.252 61.111 0.00 0.00 0.00 3.68
2370 3032 3.319198 GGGGTGAGGAGGACGCAA 61.319 66.667 0.00 0.00 0.00 4.85
2387 3049 4.817909 AAGGGTAGAGGGGGCGGG 62.818 72.222 0.00 0.00 0.00 6.13
2388 3050 3.162154 GAAGGGTAGAGGGGGCGG 61.162 72.222 0.00 0.00 0.00 6.13
2389 3051 3.162154 GGAAGGGTAGAGGGGGCG 61.162 72.222 0.00 0.00 0.00 6.13
2390 3052 1.766864 GAGGAAGGGTAGAGGGGGC 60.767 68.421 0.00 0.00 0.00 5.80
2391 3053 1.457831 CGAGGAAGGGTAGAGGGGG 60.458 68.421 0.00 0.00 0.00 5.40
2392 3054 2.134933 GCGAGGAAGGGTAGAGGGG 61.135 68.421 0.00 0.00 0.00 4.79
2393 3055 2.134933 GGCGAGGAAGGGTAGAGGG 61.135 68.421 0.00 0.00 0.00 4.30
2394 3056 2.491022 CGGCGAGGAAGGGTAGAGG 61.491 68.421 0.00 0.00 0.00 3.69
2395 3057 3.121019 CGGCGAGGAAGGGTAGAG 58.879 66.667 0.00 0.00 0.00 2.43
2396 3058 3.145551 GCGGCGAGGAAGGGTAGA 61.146 66.667 12.98 0.00 0.00 2.59
2397 3059 4.222847 GGCGGCGAGGAAGGGTAG 62.223 72.222 12.98 0.00 0.00 3.18
2416 3078 2.584608 CCCGGTGGCTAACTCAGG 59.415 66.667 0.00 0.00 0.00 3.86
2448 3110 3.136123 CCGCTGCCACCATCCTTG 61.136 66.667 0.00 0.00 0.00 3.61
2449 3111 4.431131 CCCGCTGCCACCATCCTT 62.431 66.667 0.00 0.00 0.00 3.36
2472 3134 2.670934 CGCAGAAGCAGGGCAACT 60.671 61.111 0.00 0.00 42.27 3.16
2473 3135 1.234615 TAACGCAGAAGCAGGGCAAC 61.235 55.000 0.00 0.00 42.27 4.17
2474 3136 0.536233 TTAACGCAGAAGCAGGGCAA 60.536 50.000 0.00 0.00 42.27 4.52
2475 3137 1.072332 TTAACGCAGAAGCAGGGCA 59.928 52.632 0.00 0.00 42.27 5.36
2476 3138 1.502190 GTTAACGCAGAAGCAGGGC 59.498 57.895 0.00 0.00 42.27 5.19
2477 3139 1.305930 GGGTTAACGCAGAAGCAGGG 61.306 60.000 17.07 0.00 42.27 4.45
2478 3140 1.305930 GGGGTTAACGCAGAAGCAGG 61.306 60.000 22.45 0.00 42.27 4.85
2479 3141 1.635663 CGGGGTTAACGCAGAAGCAG 61.636 60.000 22.45 3.02 42.27 4.24
2480 3142 1.669760 CGGGGTTAACGCAGAAGCA 60.670 57.895 22.45 0.00 42.27 3.91
2481 3143 2.396157 CCGGGGTTAACGCAGAAGC 61.396 63.158 22.45 5.55 37.42 3.86
2482 3144 0.107848 ATCCGGGGTTAACGCAGAAG 60.108 55.000 22.45 11.11 0.00 2.85
2483 3145 0.108041 GATCCGGGGTTAACGCAGAA 60.108 55.000 22.45 4.54 0.00 3.02
2484 3146 0.974010 AGATCCGGGGTTAACGCAGA 60.974 55.000 22.45 18.05 0.00 4.26
2485 3147 0.810031 CAGATCCGGGGTTAACGCAG 60.810 60.000 22.45 18.44 0.00 5.18
2486 3148 1.219664 CAGATCCGGGGTTAACGCA 59.780 57.895 22.45 4.45 0.00 5.24
2487 3149 1.523032 CCAGATCCGGGGTTAACGC 60.523 63.158 13.96 13.96 0.00 4.84
2488 3150 0.104304 CTCCAGATCCGGGGTTAACG 59.896 60.000 0.00 0.00 0.00 3.18
2489 3151 1.134491 CACTCCAGATCCGGGGTTAAC 60.134 57.143 0.00 0.00 37.82 2.01
2490 3152 1.200519 CACTCCAGATCCGGGGTTAA 58.799 55.000 0.00 0.00 37.82 2.01
2491 3153 0.689745 CCACTCCAGATCCGGGGTTA 60.690 60.000 0.00 0.00 37.82 2.85
2492 3154 1.995626 CCACTCCAGATCCGGGGTT 60.996 63.158 0.00 0.00 37.82 4.11
2493 3155 2.365635 CCACTCCAGATCCGGGGT 60.366 66.667 0.00 0.00 41.98 4.95
2494 3156 3.866582 GCCACTCCAGATCCGGGG 61.867 72.222 0.00 0.00 0.00 5.73
2495 3157 4.227134 CGCCACTCCAGATCCGGG 62.227 72.222 0.00 0.00 0.00 5.73
2496 3158 4.227134 CCGCCACTCCAGATCCGG 62.227 72.222 0.00 0.00 0.00 5.14
2497 3159 4.899239 GCCGCCACTCCAGATCCG 62.899 72.222 0.00 0.00 0.00 4.18
2498 3160 3.453070 GAGCCGCCACTCCAGATCC 62.453 68.421 0.00 0.00 0.00 3.36
2499 3161 2.107953 GAGCCGCCACTCCAGATC 59.892 66.667 0.00 0.00 0.00 2.75
2509 3171 3.830192 CTTGCCAATGGAGCCGCC 61.830 66.667 2.05 0.00 37.10 6.13
2510 3172 3.830192 CCTTGCCAATGGAGCCGC 61.830 66.667 2.05 0.00 0.00 6.53
2511 3173 3.830192 GCCTTGCCAATGGAGCCG 61.830 66.667 2.05 0.00 0.00 5.52
2512 3174 2.681064 TGCCTTGCCAATGGAGCC 60.681 61.111 2.05 0.00 0.00 4.70
2513 3175 2.575461 GTGCCTTGCCAATGGAGC 59.425 61.111 2.05 0.00 0.00 4.70
2514 3176 1.926511 GACGTGCCTTGCCAATGGAG 61.927 60.000 2.05 0.00 0.00 3.86
2515 3177 1.971167 GACGTGCCTTGCCAATGGA 60.971 57.895 2.05 0.00 0.00 3.41
2516 3178 2.568090 GACGTGCCTTGCCAATGG 59.432 61.111 0.00 0.00 0.00 3.16
2517 3179 2.568090 GGACGTGCCTTGCCAATG 59.432 61.111 0.00 0.00 0.00 2.82
2518 3180 3.055719 CGGACGTGCCTTGCCAAT 61.056 61.111 0.00 0.00 0.00 3.16
2519 3181 4.243008 TCGGACGTGCCTTGCCAA 62.243 61.111 0.00 0.00 0.00 4.52
2520 3182 4.980805 GTCGGACGTGCCTTGCCA 62.981 66.667 0.00 0.00 0.00 4.92
2521 3183 3.291101 TAGTCGGACGTGCCTTGCC 62.291 63.158 0.00 0.00 0.00 4.52
2522 3184 1.805945 CTAGTCGGACGTGCCTTGC 60.806 63.158 0.00 0.00 0.00 4.01
2523 3185 1.805945 GCTAGTCGGACGTGCCTTG 60.806 63.158 14.40 0.00 0.00 3.61
2524 3186 2.214181 CTGCTAGTCGGACGTGCCTT 62.214 60.000 19.77 0.00 0.00 4.35
2525 3187 2.675423 TGCTAGTCGGACGTGCCT 60.675 61.111 19.77 0.00 0.00 4.75
2526 3188 2.202623 CTGCTAGTCGGACGTGCC 60.203 66.667 19.77 0.00 0.00 5.01
2527 3189 1.514443 GACTGCTAGTCGGACGTGC 60.514 63.158 17.17 17.17 35.28 5.34
2528 3190 4.767633 GACTGCTAGTCGGACGTG 57.232 61.111 0.00 0.97 35.28 4.49
2535 3197 1.884926 GCCCGCATGACTGCTAGTC 60.885 63.158 0.00 8.75 46.65 2.59
2536 3198 2.187946 GCCCGCATGACTGCTAGT 59.812 61.111 0.00 0.00 46.65 2.57
2537 3199 1.886313 CTGCCCGCATGACTGCTAG 60.886 63.158 0.00 0.00 46.65 3.42
2538 3200 2.187685 CTGCCCGCATGACTGCTA 59.812 61.111 0.00 0.00 46.65 3.49
2539 3201 4.025858 ACTGCCCGCATGACTGCT 62.026 61.111 0.00 0.00 46.65 4.24
2540 3202 3.807538 CACTGCCCGCATGACTGC 61.808 66.667 0.00 0.00 45.31 4.40
2541 3203 2.881539 ATCCACTGCCCGCATGACTG 62.882 60.000 0.00 0.00 0.00 3.51
2542 3204 2.599645 GATCCACTGCCCGCATGACT 62.600 60.000 0.00 0.00 0.00 3.41
2543 3205 2.124570 ATCCACTGCCCGCATGAC 60.125 61.111 0.00 0.00 0.00 3.06
2544 3206 2.190313 GATCCACTGCCCGCATGA 59.810 61.111 0.00 0.00 0.00 3.07
2545 3207 2.184830 CAGATCCACTGCCCGCATG 61.185 63.158 0.00 0.00 39.86 4.06
2546 3208 2.191375 CAGATCCACTGCCCGCAT 59.809 61.111 0.00 0.00 39.86 4.73
2547 3209 4.100084 CCAGATCCACTGCCCGCA 62.100 66.667 0.00 0.00 44.52 5.69
2548 3210 4.101448 ACCAGATCCACTGCCCGC 62.101 66.667 0.00 0.00 44.52 6.13
2549 3211 2.124983 CACCAGATCCACTGCCCG 60.125 66.667 0.00 0.00 44.52 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.