Multiple sequence alignment - TraesCS6B01G053500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G053500 chr6B 100.000 2046 0 0 1 2046 33043408 33041363 0.000000e+00 3779
1 TraesCS6B01G053500 chr6B 85.973 884 74 23 812 1680 33011338 33012186 0.000000e+00 900
2 TraesCS6B01G053500 chr6B 84.684 901 87 23 806 1693 32998477 32997615 0.000000e+00 852
3 TraesCS6B01G053500 chr6B 100.000 374 0 0 2339 2712 33041070 33040697 0.000000e+00 691
4 TraesCS6B01G053500 chr6A 88.266 1730 137 31 1 1697 19175927 19174231 0.000000e+00 2010
5 TraesCS6B01G053500 chr6A 84.694 882 79 24 820 1693 19162340 19161507 0.000000e+00 830
6 TraesCS6B01G053500 chr6A 87.124 699 54 14 999 1680 19167404 19168083 0.000000e+00 760
7 TraesCS6B01G053500 chr6A 92.737 179 11 2 1745 1922 19174229 19174052 9.630000e-65 257
8 TraesCS6B01G053500 chr6D 85.779 879 88 25 820 1693 18937568 18936722 0.000000e+00 896
9 TraesCS6B01G053500 chr6D 84.424 886 84 25 810 1673 18940484 18941337 0.000000e+00 822
10 TraesCS6B01G053500 chr6D 83.010 206 25 8 2512 2712 18999192 18998992 7.720000e-41 178
11 TraesCS6B01G053500 chr7D 94.118 340 20 0 1264 1603 108085665 108086004 4.000000e-143 518
12 TraesCS6B01G053500 chr7A 94.065 337 20 0 1264 1600 113371104 113371440 1.860000e-141 512


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G053500 chr6B 33040697 33043408 2711 True 2235.0 3779 100.0000 1 2712 2 chr6B.!!$R2 2711
1 TraesCS6B01G053500 chr6B 33011338 33012186 848 False 900.0 900 85.9730 812 1680 1 chr6B.!!$F1 868
2 TraesCS6B01G053500 chr6B 32997615 32998477 862 True 852.0 852 84.6840 806 1693 1 chr6B.!!$R1 887
3 TraesCS6B01G053500 chr6A 19174052 19175927 1875 True 1133.5 2010 90.5015 1 1922 2 chr6A.!!$R2 1921
4 TraesCS6B01G053500 chr6A 19161507 19162340 833 True 830.0 830 84.6940 820 1693 1 chr6A.!!$R1 873
5 TraesCS6B01G053500 chr6A 19167404 19168083 679 False 760.0 760 87.1240 999 1680 1 chr6A.!!$F1 681
6 TraesCS6B01G053500 chr6D 18936722 18937568 846 True 896.0 896 85.7790 820 1693 1 chr6D.!!$R1 873
7 TraesCS6B01G053500 chr6D 18940484 18941337 853 False 822.0 822 84.4240 810 1673 1 chr6D.!!$F1 863

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
679 685 0.033228 CCATCACAAAGCGCCCAAAA 59.967 50.0 2.29 0.0 0.0 2.44 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2501 2604 0.033405 TGGCTAAGGGAGTAGCTCGT 60.033 55.0 0.0 0.0 44.94 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 72 6.657836 CAAAAGATCTTGAATTTGCCATCC 57.342 37.500 9.17 0.00 0.00 3.51
71 73 6.403878 CAAAAGATCTTGAATTTGCCATCCT 58.596 36.000 9.17 0.00 0.00 3.24
72 74 7.549839 CAAAAGATCTTGAATTTGCCATCCTA 58.450 34.615 9.17 0.00 0.00 2.94
73 75 7.909485 AAAGATCTTGAATTTGCCATCCTAT 57.091 32.000 9.17 0.00 0.00 2.57
74 76 9.425248 AAAAGATCTTGAATTTGCCATCCTATA 57.575 29.630 9.17 0.00 0.00 1.31
75 77 9.425248 AAAGATCTTGAATTTGCCATCCTATAA 57.575 29.630 9.17 0.00 0.00 0.98
102 105 6.051717 AGGAAACGATCTCTAATTCATGGTG 58.948 40.000 0.00 0.00 0.00 4.17
106 109 7.921786 AACGATCTCTAATTCATGGTGAAAA 57.078 32.000 0.00 0.00 40.12 2.29
118 121 7.778470 TTCATGGTGAAAATGTACAAAAACC 57.222 32.000 0.00 4.73 32.71 3.27
123 126 8.202745 TGGTGAAAATGTACAAAAACCATTTC 57.797 30.769 0.00 3.76 37.71 2.17
191 196 9.890629 AATTCACATAACATAGTACAGTGACAT 57.109 29.630 0.00 0.00 34.64 3.06
199 204 5.586243 ACATAGTACAGTGACATGGCAATTC 59.414 40.000 0.58 0.00 0.00 2.17
201 206 5.420725 AGTACAGTGACATGGCAATTCTA 57.579 39.130 0.58 0.00 0.00 2.10
204 209 6.886459 AGTACAGTGACATGGCAATTCTATTT 59.114 34.615 0.58 0.00 0.00 1.40
205 210 5.957798 ACAGTGACATGGCAATTCTATTTG 58.042 37.500 0.58 0.00 0.00 2.32
206 211 5.477984 ACAGTGACATGGCAATTCTATTTGT 59.522 36.000 0.58 0.00 0.00 2.83
210 215 8.752187 AGTGACATGGCAATTCTATTTGTAAAT 58.248 29.630 0.58 0.00 0.00 1.40
218 223 8.379902 GGCAATTCTATTTGTAAATTTTCCACG 58.620 33.333 0.00 0.00 0.00 4.94
232 237 6.949578 ATTTTCCACGAAACAAATGCATAG 57.050 33.333 0.00 0.00 30.83 2.23
280 285 2.001812 CTATGTGAGCACAACGAGCT 57.998 50.000 7.46 0.00 45.41 4.09
281 286 1.657594 CTATGTGAGCACAACGAGCTG 59.342 52.381 7.46 0.00 45.41 4.24
282 287 0.033920 ATGTGAGCACAACGAGCTGA 59.966 50.000 7.46 0.00 45.41 4.26
283 288 0.875908 TGTGAGCACAACGAGCTGAC 60.876 55.000 0.00 0.00 44.82 3.51
284 289 1.300931 TGAGCACAACGAGCTGACC 60.301 57.895 0.00 0.00 43.58 4.02
285 290 1.300931 GAGCACAACGAGCTGACCA 60.301 57.895 0.00 0.00 43.58 4.02
286 291 0.880278 GAGCACAACGAGCTGACCAA 60.880 55.000 0.00 0.00 43.58 3.67
287 292 0.463654 AGCACAACGAGCTGACCAAA 60.464 50.000 0.00 0.00 41.61 3.28
297 302 1.882623 AGCTGACCAAAACTTGCTAGC 59.117 47.619 8.10 8.10 32.90 3.42
301 306 4.797275 GCTGACCAAAACTTGCTAGCAAAT 60.797 41.667 28.95 18.84 35.33 2.32
332 337 4.441356 GGGCACAACAAAGTTGATTTCAGA 60.441 41.667 15.99 0.00 0.00 3.27
346 351 7.330946 AGTTGATTTCAGACATTCATGCATTTG 59.669 33.333 0.00 0.00 0.00 2.32
350 355 7.789273 TTTCAGACATTCATGCATTTGTTTT 57.211 28.000 0.00 0.00 0.00 2.43
400 405 2.499289 ACATGGGCACAACAAAGTTGAA 59.501 40.909 15.99 0.00 0.00 2.69
407 412 4.741676 GGCACAACAAAGTTGAATTCAGAG 59.258 41.667 15.99 1.29 0.00 3.35
415 420 6.318648 ACAAAGTTGAATTCAGAGCTGTACAA 59.681 34.615 8.41 0.00 0.00 2.41
416 421 6.551385 AAGTTGAATTCAGAGCTGTACAAG 57.449 37.500 8.41 0.00 0.00 3.16
417 422 4.999950 AGTTGAATTCAGAGCTGTACAAGG 59.000 41.667 8.41 0.00 0.00 3.61
418 423 4.623932 TGAATTCAGAGCTGTACAAGGT 57.376 40.909 3.38 0.00 40.07 3.50
419 424 5.738619 TGAATTCAGAGCTGTACAAGGTA 57.261 39.130 3.38 0.00 36.52 3.08
420 425 5.724328 TGAATTCAGAGCTGTACAAGGTAG 58.276 41.667 3.38 0.00 36.52 3.18
421 426 3.594603 TTCAGAGCTGTACAAGGTAGC 57.405 47.619 0.00 0.00 36.52 3.58
432 438 0.376152 CAAGGTAGCGCTGCAATGAG 59.624 55.000 26.86 7.93 0.00 2.90
433 439 1.372087 AAGGTAGCGCTGCAATGAGC 61.372 55.000 26.86 12.19 45.96 4.26
463 469 4.508551 AGATACATGGGCACATCAAAGA 57.491 40.909 0.00 0.00 34.35 2.52
471 477 3.833650 TGGGCACATCAAAGATGAATTGT 59.166 39.130 13.46 0.00 39.49 2.71
496 502 4.202050 GCAAATGTAGTGCTAGGGAATTGG 60.202 45.833 0.00 0.00 39.00 3.16
507 513 5.244402 TGCTAGGGAATTGGAATATTGCATG 59.756 40.000 10.71 0.00 0.00 4.06
511 517 7.383156 AGGGAATTGGAATATTGCATGATTT 57.617 32.000 10.71 3.09 0.00 2.17
528 534 4.825422 TGATTTAGAAGTGACAGAGCAGG 58.175 43.478 0.00 0.00 0.00 4.85
529 535 3.685139 TTTAGAAGTGACAGAGCAGGG 57.315 47.619 0.00 0.00 0.00 4.45
544 550 0.883814 CAGGGATGAGAATGAGCGCC 60.884 60.000 2.29 0.00 0.00 6.53
546 552 0.681733 GGGATGAGAATGAGCGCCTA 59.318 55.000 2.29 0.00 0.00 3.93
549 555 0.394565 ATGAGAATGAGCGCCTACCC 59.605 55.000 2.29 0.00 0.00 3.69
562 568 1.339727 GCCTACCCGTTTCCACTTGAT 60.340 52.381 0.00 0.00 0.00 2.57
574 580 3.942829 TCCACTTGATGACATGAAGGAC 58.057 45.455 17.42 0.00 30.91 3.85
592 598 2.752903 GGACACCACAACACTTGAAAGT 59.247 45.455 0.00 0.00 40.60 2.66
600 606 3.201266 ACAACACTTGAAAGTCACCCCTA 59.799 43.478 0.00 0.00 37.08 3.53
601 607 3.771577 ACACTTGAAAGTCACCCCTAG 57.228 47.619 0.00 0.00 37.08 3.02
614 620 0.407918 CCCCTAGCCCCAAGACAAAA 59.592 55.000 0.00 0.00 0.00 2.44
615 621 1.616994 CCCCTAGCCCCAAGACAAAAG 60.617 57.143 0.00 0.00 0.00 2.27
616 622 1.616994 CCCTAGCCCCAAGACAAAAGG 60.617 57.143 0.00 0.00 0.00 3.11
659 665 2.029844 GCTTTCGCGCTCCAGAAGT 61.030 57.895 5.56 0.00 0.00 3.01
679 685 0.033228 CCATCACAAAGCGCCCAAAA 59.967 50.000 2.29 0.00 0.00 2.44
681 687 0.033366 ATCACAAAGCGCCCAAAACC 59.967 50.000 2.29 0.00 0.00 3.27
682 688 1.142748 CACAAAGCGCCCAAAACCA 59.857 52.632 2.29 0.00 0.00 3.67
683 689 1.142965 ACAAAGCGCCCAAAACCAC 59.857 52.632 2.29 0.00 0.00 4.16
684 690 1.142748 CAAAGCGCCCAAAACCACA 59.857 52.632 2.29 0.00 0.00 4.17
685 691 0.875474 CAAAGCGCCCAAAACCACAG 60.875 55.000 2.29 0.00 0.00 3.66
686 692 2.642996 AAAGCGCCCAAAACCACAGC 62.643 55.000 2.29 0.00 0.00 4.40
688 694 3.591835 CGCCCAAAACCACAGCGT 61.592 61.111 0.00 0.00 41.78 5.07
690 696 3.039134 CCCAAAACCACAGCGTCC 58.961 61.111 0.00 0.00 0.00 4.79
691 697 1.826054 CCCAAAACCACAGCGTCCA 60.826 57.895 0.00 0.00 0.00 4.02
692 698 1.358759 CCAAAACCACAGCGTCCAC 59.641 57.895 0.00 0.00 0.00 4.02
693 699 1.010125 CAAAACCACAGCGTCCACG 60.010 57.895 0.00 0.00 43.27 4.94
733 759 2.557059 ATTCGTGCTGCGTGATCCGA 62.557 55.000 7.64 0.00 42.13 4.55
734 760 3.545481 CGTGCTGCGTGATCCGAC 61.545 66.667 7.64 0.98 39.56 4.79
737 763 2.278857 GCTGCGTGATCCGACGAT 60.279 61.111 9.56 0.00 42.10 3.73
741 767 2.667448 GCTGCGTGATCCGACGATTATA 60.667 50.000 9.56 0.00 42.10 0.98
747 773 5.283247 GCGTGATCCGACGATTATAAAGTAG 59.717 44.000 9.56 0.00 42.10 2.57
749 775 6.854892 CGTGATCCGACGATTATAAAGTAGTT 59.145 38.462 0.00 0.00 42.10 2.24
765 795 0.315869 AGTTCGCTGCAAAAACGTCG 60.316 50.000 0.00 0.00 0.00 5.12
766 796 1.652930 TTCGCTGCAAAAACGTCGC 60.653 52.632 0.00 0.00 0.00 5.19
791 822 5.984323 TGTGACGTCAGCTAGATAGTAGTAG 59.016 44.000 20.73 0.00 0.00 2.57
793 824 7.144661 GTGACGTCAGCTAGATAGTAGTAGTA 58.855 42.308 20.73 0.00 0.00 1.82
794 825 7.814107 GTGACGTCAGCTAGATAGTAGTAGTAT 59.186 40.741 20.73 0.00 0.00 2.12
795 826 8.366401 TGACGTCAGCTAGATAGTAGTAGTATT 58.634 37.037 15.76 0.00 0.00 1.89
796 827 9.206870 GACGTCAGCTAGATAGTAGTAGTATTT 57.793 37.037 11.55 0.00 0.00 1.40
797 828 9.558396 ACGTCAGCTAGATAGTAGTAGTATTTT 57.442 33.333 0.00 0.00 0.00 1.82
847 881 3.132289 AGGTCATCGATCCGTACATTGTT 59.868 43.478 0.00 0.00 0.00 2.83
863 898 0.888736 TGTTGCTCCCACACCAATCG 60.889 55.000 0.00 0.00 0.00 3.34
906 942 0.750546 GGGCAATCCCGAAACCCTAC 60.751 60.000 0.00 0.00 43.94 3.18
1018 1056 4.636435 CCCACGTCCCAGCCGTTT 62.636 66.667 0.00 0.00 36.17 3.60
1054 1098 2.738521 GCAGCGCAAGTCGAGGAA 60.739 61.111 11.47 0.00 41.67 3.36
1183 1239 1.754226 CCCTTCTCTCCTTCTTCTCCG 59.246 57.143 0.00 0.00 0.00 4.63
1189 1269 0.173708 CTCCTTCTTCTCCGGTTCCG 59.826 60.000 0.00 4.08 0.00 4.30
1190 1270 0.251474 TCCTTCTTCTCCGGTTCCGA 60.251 55.000 13.08 0.00 0.00 4.55
1191 1271 0.824759 CCTTCTTCTCCGGTTCCGAT 59.175 55.000 13.08 0.00 0.00 4.18
1192 1272 1.202428 CCTTCTTCTCCGGTTCCGATC 60.202 57.143 13.08 0.00 0.00 3.69
1193 1273 1.476891 CTTCTTCTCCGGTTCCGATCA 59.523 52.381 13.08 0.00 0.00 2.92
1194 1274 1.103803 TCTTCTCCGGTTCCGATCAG 58.896 55.000 13.08 5.78 0.00 2.90
1195 1275 0.818296 CTTCTCCGGTTCCGATCAGT 59.182 55.000 13.08 0.00 0.00 3.41
1196 1276 1.204941 CTTCTCCGGTTCCGATCAGTT 59.795 52.381 13.08 0.00 0.00 3.16
1197 1277 0.530744 TCTCCGGTTCCGATCAGTTG 59.469 55.000 13.08 0.00 0.00 3.16
1198 1278 1.079405 TCCGGTTCCGATCAGTTGC 60.079 57.895 13.08 0.00 0.00 4.17
1199 1279 1.079127 CCGGTTCCGATCAGTTGCT 60.079 57.895 13.08 0.00 0.00 3.91
1200 1280 1.361668 CCGGTTCCGATCAGTTGCTG 61.362 60.000 13.08 0.00 0.00 4.41
1201 1281 0.670546 CGGTTCCGATCAGTTGCTGT 60.671 55.000 5.19 0.00 32.61 4.40
1202 1282 1.523758 GGTTCCGATCAGTTGCTGTT 58.476 50.000 0.00 0.00 32.61 3.16
1203 1283 1.880027 GGTTCCGATCAGTTGCTGTTT 59.120 47.619 0.00 0.00 32.61 2.83
1204 1284 2.095718 GGTTCCGATCAGTTGCTGTTTC 60.096 50.000 0.00 0.00 32.61 2.78
1205 1285 1.428448 TCCGATCAGTTGCTGTTTCG 58.572 50.000 13.14 13.14 37.66 3.46
1206 1286 0.179215 CCGATCAGTTGCTGTTTCGC 60.179 55.000 14.03 0.00 37.11 4.70
1207 1287 0.792640 CGATCAGTTGCTGTTTCGCT 59.207 50.000 0.00 0.00 34.10 4.93
1208 1288 1.201855 CGATCAGTTGCTGTTTCGCTC 60.202 52.381 0.00 0.00 34.10 5.03
1209 1289 2.072298 GATCAGTTGCTGTTTCGCTCT 58.928 47.619 0.00 0.00 32.61 4.09
1210 1290 1.953559 TCAGTTGCTGTTTCGCTCTT 58.046 45.000 0.00 0.00 32.61 2.85
1211 1291 1.867233 TCAGTTGCTGTTTCGCTCTTC 59.133 47.619 0.00 0.00 32.61 2.87
1212 1292 1.069636 CAGTTGCTGTTTCGCTCTTCC 60.070 52.381 0.00 0.00 0.00 3.46
1241 1321 3.011818 TGCTGTTTCGCTGATGATCAAT 58.988 40.909 0.00 0.00 0.00 2.57
1246 1326 4.142838 TGTTTCGCTGATGATCAATGTGTC 60.143 41.667 0.00 0.00 0.00 3.67
1441 1526 1.344763 CAGGACTTCAAGACGGACCTT 59.655 52.381 0.00 0.00 0.00 3.50
1682 1785 7.519970 CGCTTCTGGTTTTTAGATGTGTTACTT 60.520 37.037 0.00 0.00 0.00 2.24
1695 1798 8.357796 AGATGTGTTACTTGATCGTGATAATG 57.642 34.615 0.00 0.00 0.00 1.90
1696 1799 8.197439 AGATGTGTTACTTGATCGTGATAATGA 58.803 33.333 0.00 0.00 0.00 2.57
1698 1801 8.185003 TGTGTTACTTGATCGTGATAATGAAG 57.815 34.615 0.00 0.00 0.00 3.02
1699 1802 7.277760 TGTGTTACTTGATCGTGATAATGAAGG 59.722 37.037 0.00 0.00 0.00 3.46
1700 1803 7.491372 GTGTTACTTGATCGTGATAATGAAGGA 59.509 37.037 0.00 0.00 0.00 3.36
1703 1806 7.488187 ACTTGATCGTGATAATGAAGGATTG 57.512 36.000 0.00 0.00 0.00 2.67
1704 1807 7.050377 ACTTGATCGTGATAATGAAGGATTGT 58.950 34.615 0.00 0.00 0.00 2.71
1705 1808 6.849588 TGATCGTGATAATGAAGGATTGTG 57.150 37.500 0.00 0.00 0.00 3.33
1706 1809 6.581712 TGATCGTGATAATGAAGGATTGTGA 58.418 36.000 0.00 0.00 0.00 3.58
1707 1810 7.047271 TGATCGTGATAATGAAGGATTGTGAA 58.953 34.615 0.00 0.00 0.00 3.18
1708 1811 7.552330 TGATCGTGATAATGAAGGATTGTGAAA 59.448 33.333 0.00 0.00 0.00 2.69
1709 1812 7.864108 TCGTGATAATGAAGGATTGTGAAAT 57.136 32.000 0.00 0.00 0.00 2.17
1710 1813 8.956533 TCGTGATAATGAAGGATTGTGAAATA 57.043 30.769 0.00 0.00 0.00 1.40
1711 1814 9.559732 TCGTGATAATGAAGGATTGTGAAATAT 57.440 29.630 0.00 0.00 0.00 1.28
1737 1840 8.709386 ATAGTATCGTGATAATGAAGGATTGC 57.291 34.615 0.40 0.00 0.00 3.56
1738 1841 6.763355 AGTATCGTGATAATGAAGGATTGCT 58.237 36.000 0.00 0.00 0.00 3.91
1739 1842 7.220030 AGTATCGTGATAATGAAGGATTGCTT 58.780 34.615 0.00 0.00 0.00 3.91
1740 1843 5.991328 TCGTGATAATGAAGGATTGCTTC 57.009 39.130 10.69 10.69 0.00 3.86
1741 1844 5.674525 TCGTGATAATGAAGGATTGCTTCT 58.325 37.500 17.37 2.74 0.00 2.85
1742 1845 6.816136 TCGTGATAATGAAGGATTGCTTCTA 58.184 36.000 17.37 4.75 0.00 2.10
1743 1846 6.925718 TCGTGATAATGAAGGATTGCTTCTAG 59.074 38.462 17.37 0.00 0.00 2.43
1744 1847 6.703607 CGTGATAATGAAGGATTGCTTCTAGT 59.296 38.462 17.37 7.30 0.00 2.57
1745 1848 7.225538 CGTGATAATGAAGGATTGCTTCTAGTT 59.774 37.037 17.37 12.07 0.00 2.24
1746 1849 8.897752 GTGATAATGAAGGATTGCTTCTAGTTT 58.102 33.333 17.37 9.29 0.00 2.66
1747 1850 9.466497 TGATAATGAAGGATTGCTTCTAGTTTT 57.534 29.630 17.37 6.68 0.00 2.43
1781 1884 7.787725 AAAAAGATCTGGTCCGTTATCATAC 57.212 36.000 0.00 0.00 0.00 2.39
1788 1891 7.918536 TCTGGTCCGTTATCATACTAGTATC 57.081 40.000 12.62 0.79 0.00 2.24
1791 1894 7.879070 TGGTCCGTTATCATACTAGTATCAAC 58.121 38.462 12.62 14.40 0.00 3.18
1792 1895 7.722728 TGGTCCGTTATCATACTAGTATCAACT 59.277 37.037 12.62 1.15 39.91 3.16
1837 1940 5.412286 GTGAAACAAATGCTTTATTGGCCAT 59.588 36.000 6.09 0.00 36.32 4.40
1870 1973 6.486253 TCAGTACTGAGCAATTGTGAAATC 57.514 37.500 21.74 0.00 34.14 2.17
1896 1999 4.791974 CTTTCTGTTCTTTGATGCTGTCC 58.208 43.478 0.00 0.00 0.00 4.02
1899 2002 3.817084 TCTGTTCTTTGATGCTGTCCTTG 59.183 43.478 0.00 0.00 0.00 3.61
1907 2010 2.627699 TGATGCTGTCCTTGGTTTTTCC 59.372 45.455 0.00 0.00 0.00 3.13
1908 2011 1.408969 TGCTGTCCTTGGTTTTTCCC 58.591 50.000 0.00 0.00 34.77 3.97
1922 2025 5.104318 TGGTTTTTCCCCTTTGCTTTGTAAT 60.104 36.000 0.00 0.00 34.77 1.89
1923 2026 5.825679 GGTTTTTCCCCTTTGCTTTGTAATT 59.174 36.000 0.00 0.00 0.00 1.40
1924 2027 6.320164 GGTTTTTCCCCTTTGCTTTGTAATTT 59.680 34.615 0.00 0.00 0.00 1.82
1925 2028 6.934048 TTTTCCCCTTTGCTTTGTAATTTG 57.066 33.333 0.00 0.00 0.00 2.32
1926 2029 5.622346 TTCCCCTTTGCTTTGTAATTTGT 57.378 34.783 0.00 0.00 0.00 2.83
1927 2030 6.732896 TTCCCCTTTGCTTTGTAATTTGTA 57.267 33.333 0.00 0.00 0.00 2.41
1928 2031 6.732896 TCCCCTTTGCTTTGTAATTTGTAA 57.267 33.333 0.00 0.00 0.00 2.41
1929 2032 7.309770 TCCCCTTTGCTTTGTAATTTGTAAT 57.690 32.000 0.00 0.00 0.00 1.89
1930 2033 7.740805 TCCCCTTTGCTTTGTAATTTGTAATT 58.259 30.769 0.00 0.00 0.00 1.40
1931 2034 7.659390 TCCCCTTTGCTTTGTAATTTGTAATTG 59.341 33.333 0.00 0.00 0.00 2.32
1932 2035 7.443879 CCCCTTTGCTTTGTAATTTGTAATTGT 59.556 33.333 0.00 0.00 0.00 2.71
1933 2036 8.495148 CCCTTTGCTTTGTAATTTGTAATTGTC 58.505 33.333 0.00 0.00 0.00 3.18
1934 2037 9.039870 CCTTTGCTTTGTAATTTGTAATTGTCA 57.960 29.630 0.00 0.00 0.00 3.58
1935 2038 9.848172 CTTTGCTTTGTAATTTGTAATTGTCAC 57.152 29.630 0.00 0.00 0.00 3.67
1936 2039 8.932945 TTGCTTTGTAATTTGTAATTGTCACA 57.067 26.923 0.00 0.00 0.00 3.58
1937 2040 8.932945 TGCTTTGTAATTTGTAATTGTCACAA 57.067 26.923 0.00 0.00 34.18 3.33
1938 2041 9.539825 TGCTTTGTAATTTGTAATTGTCACAAT 57.460 25.926 0.00 0.00 35.89 2.71
1946 2049 9.859427 AATTTGTAATTGTCACAATATCACTGG 57.141 29.630 2.67 0.00 35.89 4.00
1947 2050 7.389803 TTGTAATTGTCACAATATCACTGGG 57.610 36.000 2.67 0.00 31.11 4.45
1948 2051 6.480763 TGTAATTGTCACAATATCACTGGGT 58.519 36.000 2.67 0.00 0.00 4.51
1949 2052 5.902613 AATTGTCACAATATCACTGGGTG 57.097 39.130 2.67 0.00 34.45 4.61
1950 2053 2.710377 TGTCACAATATCACTGGGTGC 58.290 47.619 0.00 0.00 32.98 5.01
1951 2054 2.305635 TGTCACAATATCACTGGGTGCT 59.694 45.455 0.00 0.00 32.98 4.40
1952 2055 2.679837 GTCACAATATCACTGGGTGCTG 59.320 50.000 0.00 0.00 32.98 4.41
1953 2056 2.305635 TCACAATATCACTGGGTGCTGT 59.694 45.455 0.00 0.00 32.98 4.40
1954 2057 2.679837 CACAATATCACTGGGTGCTGTC 59.320 50.000 0.00 0.00 32.98 3.51
1955 2058 2.573462 ACAATATCACTGGGTGCTGTCT 59.427 45.455 0.00 0.00 32.98 3.41
1956 2059 2.941064 CAATATCACTGGGTGCTGTCTG 59.059 50.000 0.00 0.00 32.98 3.51
1957 2060 0.904649 TATCACTGGGTGCTGTCTGG 59.095 55.000 0.00 0.00 32.98 3.86
1958 2061 1.130054 ATCACTGGGTGCTGTCTGGT 61.130 55.000 0.00 0.00 32.98 4.00
1959 2062 1.302033 CACTGGGTGCTGTCTGGTC 60.302 63.158 0.00 0.00 0.00 4.02
1960 2063 1.766059 ACTGGGTGCTGTCTGGTCA 60.766 57.895 0.00 0.00 0.00 4.02
1961 2064 1.344953 ACTGGGTGCTGTCTGGTCAA 61.345 55.000 0.00 0.00 0.00 3.18
1962 2065 0.037303 CTGGGTGCTGTCTGGTCAAT 59.963 55.000 0.00 0.00 0.00 2.57
1963 2066 0.250858 TGGGTGCTGTCTGGTCAATG 60.251 55.000 0.00 0.00 0.00 2.82
1964 2067 0.036732 GGGTGCTGTCTGGTCAATGA 59.963 55.000 0.00 0.00 0.00 2.57
1965 2068 1.545428 GGGTGCTGTCTGGTCAATGAA 60.545 52.381 0.00 0.00 0.00 2.57
1966 2069 1.808945 GGTGCTGTCTGGTCAATGAAG 59.191 52.381 0.00 0.00 0.00 3.02
1967 2070 1.808945 GTGCTGTCTGGTCAATGAAGG 59.191 52.381 0.00 0.00 0.00 3.46
1968 2071 1.699083 TGCTGTCTGGTCAATGAAGGA 59.301 47.619 0.00 0.00 0.00 3.36
1969 2072 2.306805 TGCTGTCTGGTCAATGAAGGAT 59.693 45.455 0.00 0.00 0.00 3.24
1970 2073 3.245016 TGCTGTCTGGTCAATGAAGGATT 60.245 43.478 0.00 0.00 0.00 3.01
1971 2074 3.760684 GCTGTCTGGTCAATGAAGGATTT 59.239 43.478 0.00 0.00 0.00 2.17
1972 2075 4.380233 GCTGTCTGGTCAATGAAGGATTTG 60.380 45.833 0.00 0.00 0.00 2.32
1973 2076 4.728772 TGTCTGGTCAATGAAGGATTTGT 58.271 39.130 0.00 0.00 0.00 2.83
1974 2077 4.761739 TGTCTGGTCAATGAAGGATTTGTC 59.238 41.667 0.00 0.00 0.00 3.18
1975 2078 4.002982 TCTGGTCAATGAAGGATTTGTCG 58.997 43.478 0.00 0.00 0.00 4.35
1976 2079 3.081061 TGGTCAATGAAGGATTTGTCGG 58.919 45.455 0.00 0.00 0.00 4.79
1977 2080 2.423538 GGTCAATGAAGGATTTGTCGGG 59.576 50.000 0.00 0.00 0.00 5.14
1978 2081 2.423538 GTCAATGAAGGATTTGTCGGGG 59.576 50.000 0.00 0.00 0.00 5.73
1979 2082 1.134946 CAATGAAGGATTTGTCGGGGC 59.865 52.381 0.00 0.00 0.00 5.80
1980 2083 0.331278 ATGAAGGATTTGTCGGGGCA 59.669 50.000 0.00 0.00 0.00 5.36
1981 2084 0.331278 TGAAGGATTTGTCGGGGCAT 59.669 50.000 0.00 0.00 0.00 4.40
1982 2085 1.025041 GAAGGATTTGTCGGGGCATC 58.975 55.000 0.00 0.00 0.00 3.91
1983 2086 0.748005 AAGGATTTGTCGGGGCATCG 60.748 55.000 0.00 0.00 0.00 3.84
1984 2087 2.186826 GGATTTGTCGGGGCATCGG 61.187 63.158 0.00 0.00 0.00 4.18
1985 2088 1.153249 GATTTGTCGGGGCATCGGA 60.153 57.895 0.00 0.00 0.00 4.55
1986 2089 1.153168 ATTTGTCGGGGCATCGGAG 60.153 57.895 0.00 0.00 0.00 4.63
1987 2090 2.608970 ATTTGTCGGGGCATCGGAGG 62.609 60.000 0.00 0.00 0.00 4.30
1988 2091 4.770362 TGTCGGGGCATCGGAGGA 62.770 66.667 0.00 0.00 0.00 3.71
1989 2092 3.234730 GTCGGGGCATCGGAGGAT 61.235 66.667 0.00 0.00 0.00 3.24
1990 2093 2.445845 TCGGGGCATCGGAGGATT 60.446 61.111 0.00 0.00 0.00 3.01
1991 2094 2.070039 TCGGGGCATCGGAGGATTT 61.070 57.895 0.00 0.00 0.00 2.17
1992 2095 1.152963 CGGGGCATCGGAGGATTTT 60.153 57.895 0.00 0.00 0.00 1.82
1993 2096 0.107831 CGGGGCATCGGAGGATTTTA 59.892 55.000 0.00 0.00 0.00 1.52
1994 2097 1.878102 CGGGGCATCGGAGGATTTTAG 60.878 57.143 0.00 0.00 0.00 1.85
1995 2098 1.545651 GGGGCATCGGAGGATTTTAGG 60.546 57.143 0.00 0.00 0.00 2.69
1996 2099 1.545651 GGGCATCGGAGGATTTTAGGG 60.546 57.143 0.00 0.00 0.00 3.53
1997 2100 1.143073 GGCATCGGAGGATTTTAGGGT 59.857 52.381 0.00 0.00 0.00 4.34
1998 2101 2.222027 GCATCGGAGGATTTTAGGGTG 58.778 52.381 0.00 0.00 0.00 4.61
1999 2102 2.421529 GCATCGGAGGATTTTAGGGTGT 60.422 50.000 0.00 0.00 0.00 4.16
2000 2103 3.181458 GCATCGGAGGATTTTAGGGTGTA 60.181 47.826 0.00 0.00 0.00 2.90
2001 2104 4.685030 GCATCGGAGGATTTTAGGGTGTAA 60.685 45.833 0.00 0.00 0.00 2.41
2002 2105 4.476628 TCGGAGGATTTTAGGGTGTAAC 57.523 45.455 0.00 0.00 0.00 2.50
2003 2106 3.839490 TCGGAGGATTTTAGGGTGTAACA 59.161 43.478 0.00 0.00 39.98 2.41
2004 2107 3.937079 CGGAGGATTTTAGGGTGTAACAC 59.063 47.826 0.00 0.00 44.26 3.32
2008 2111 5.557866 AGGATTTTAGGGTGTAACACACTC 58.442 41.667 14.05 10.49 45.98 3.51
2018 2121 5.478233 GTGTAACACACTCACAATTGTGA 57.522 39.130 33.20 33.20 45.53 3.58
2019 2122 5.008613 GGTGTAACACACTCACAATTGTGAT 59.991 40.000 34.93 23.60 46.76 3.06
2020 2123 6.203915 GGTGTAACACACTCACAATTGTGATA 59.796 38.462 34.93 22.68 46.76 2.15
2021 2124 7.254966 GGTGTAACACACTCACAATTGTGATAA 60.255 37.037 34.93 17.89 46.76 1.75
2022 2125 8.289618 GTGTAACACACTCACAATTGTGATAAT 58.710 33.333 34.93 22.87 45.53 1.28
2034 2137 8.125978 ACAATTGTGATAATGTGAATTCCACT 57.874 30.769 11.07 0.00 45.86 4.00
2035 2138 8.587608 ACAATTGTGATAATGTGAATTCCACTT 58.412 29.630 11.07 0.00 45.86 3.16
2036 2139 9.426837 CAATTGTGATAATGTGAATTCCACTTT 57.573 29.630 2.27 8.26 45.86 2.66
2037 2140 8.991243 ATTGTGATAATGTGAATTCCACTTTG 57.009 30.769 2.27 0.00 45.86 2.77
2038 2141 7.523293 TGTGATAATGTGAATTCCACTTTGT 57.477 32.000 2.27 4.73 45.86 2.83
2039 2142 7.950512 TGTGATAATGTGAATTCCACTTTGTT 58.049 30.769 2.27 0.00 45.86 2.83
2040 2143 9.072375 TGTGATAATGTGAATTCCACTTTGTTA 57.928 29.630 2.27 0.06 45.86 2.41
2041 2144 9.906660 GTGATAATGTGAATTCCACTTTGTTAA 57.093 29.630 2.27 0.00 45.86 2.01
2044 2147 7.656707 AATGTGAATTCCACTTTGTTAATGC 57.343 32.000 2.27 0.00 45.86 3.56
2045 2148 5.537188 TGTGAATTCCACTTTGTTAATGCC 58.463 37.500 2.27 0.00 45.86 4.40
2393 2496 6.740411 TTGGCTCAATTTGAATTATTTGGC 57.260 33.333 0.01 0.51 0.00 4.52
2394 2497 4.869297 TGGCTCAATTTGAATTATTTGGCG 59.131 37.500 0.01 0.00 0.00 5.69
2395 2498 4.260334 GGCTCAATTTGAATTATTTGGCGC 60.260 41.667 0.00 0.00 0.00 6.53
2396 2499 4.329528 GCTCAATTTGAATTATTTGGCGCA 59.670 37.500 10.83 0.00 0.00 6.09
2397 2500 5.501252 GCTCAATTTGAATTATTTGGCGCAG 60.501 40.000 10.83 0.00 0.00 5.18
2410 2513 3.883462 CGCAGCCCAACGTAATGA 58.117 55.556 0.00 0.00 0.00 2.57
2411 2514 2.167161 CGCAGCCCAACGTAATGAA 58.833 52.632 0.00 0.00 0.00 2.57
2412 2515 0.096976 CGCAGCCCAACGTAATGAAG 59.903 55.000 0.00 0.00 0.00 3.02
2413 2516 0.451783 GCAGCCCAACGTAATGAAGG 59.548 55.000 0.00 0.00 0.00 3.46
2414 2517 1.821216 CAGCCCAACGTAATGAAGGT 58.179 50.000 0.00 0.00 0.00 3.50
2415 2518 2.159382 CAGCCCAACGTAATGAAGGTT 58.841 47.619 0.00 0.00 36.64 3.50
2416 2519 2.161609 CAGCCCAACGTAATGAAGGTTC 59.838 50.000 0.00 0.00 34.00 3.62
2417 2520 1.471287 GCCCAACGTAATGAAGGTTCC 59.529 52.381 0.00 0.00 34.00 3.62
2418 2521 2.878526 GCCCAACGTAATGAAGGTTCCT 60.879 50.000 0.00 0.00 34.00 3.36
2419 2522 3.620472 GCCCAACGTAATGAAGGTTCCTA 60.620 47.826 0.00 0.00 34.00 2.94
2420 2523 4.777463 CCCAACGTAATGAAGGTTCCTAT 58.223 43.478 0.00 0.00 34.00 2.57
2421 2524 5.190677 CCCAACGTAATGAAGGTTCCTATT 58.809 41.667 0.00 0.00 34.00 1.73
2422 2525 6.350906 CCCAACGTAATGAAGGTTCCTATTA 58.649 40.000 0.00 0.00 34.00 0.98
2423 2526 6.996282 CCCAACGTAATGAAGGTTCCTATTAT 59.004 38.462 0.00 0.00 34.00 1.28
2424 2527 7.041372 CCCAACGTAATGAAGGTTCCTATTATG 60.041 40.741 0.00 9.98 34.00 1.90
2425 2528 7.041372 CCAACGTAATGAAGGTTCCTATTATGG 60.041 40.741 13.59 7.63 34.00 2.74
2426 2529 7.133133 ACGTAATGAAGGTTCCTATTATGGT 57.867 36.000 13.59 6.77 0.00 3.55
2427 2530 7.571025 ACGTAATGAAGGTTCCTATTATGGTT 58.429 34.615 13.59 0.00 0.00 3.67
2428 2531 7.497909 ACGTAATGAAGGTTCCTATTATGGTTG 59.502 37.037 13.59 2.07 0.00 3.77
2429 2532 7.041372 CGTAATGAAGGTTCCTATTATGGTTGG 60.041 40.741 0.00 0.00 0.00 3.77
2430 2533 6.590656 ATGAAGGTTCCTATTATGGTTGGA 57.409 37.500 0.00 0.00 0.00 3.53
2431 2534 6.395780 TGAAGGTTCCTATTATGGTTGGAA 57.604 37.500 0.00 0.00 36.37 3.53
2432 2535 6.795590 TGAAGGTTCCTATTATGGTTGGAAA 58.204 36.000 0.00 0.00 39.85 3.13
2433 2536 7.242359 TGAAGGTTCCTATTATGGTTGGAAAA 58.758 34.615 0.00 0.00 39.85 2.29
2434 2537 7.730784 TGAAGGTTCCTATTATGGTTGGAAAAA 59.269 33.333 0.00 0.00 39.85 1.94
2435 2538 7.476540 AGGTTCCTATTATGGTTGGAAAAAC 57.523 36.000 0.00 0.00 39.85 2.43
2436 2539 6.439375 AGGTTCCTATTATGGTTGGAAAAACC 59.561 38.462 0.15 0.15 39.85 3.27
2446 2549 2.992124 TGGAAAAACCACGAGACTCA 57.008 45.000 2.82 0.00 44.64 3.41
2447 2550 3.269538 TGGAAAAACCACGAGACTCAA 57.730 42.857 2.82 0.00 44.64 3.02
2448 2551 2.940410 TGGAAAAACCACGAGACTCAAC 59.060 45.455 2.82 0.00 44.64 3.18
2449 2552 3.203716 GGAAAAACCACGAGACTCAACT 58.796 45.455 2.82 0.00 38.79 3.16
2450 2553 3.247886 GGAAAAACCACGAGACTCAACTC 59.752 47.826 2.82 0.00 38.79 3.01
2451 2554 2.528041 AAACCACGAGACTCAACTCC 57.472 50.000 2.82 0.00 33.83 3.85
2452 2555 0.680061 AACCACGAGACTCAACTCCC 59.320 55.000 2.82 0.00 33.83 4.30
2453 2556 0.178958 ACCACGAGACTCAACTCCCT 60.179 55.000 2.82 0.00 33.83 4.20
2454 2557 1.075050 ACCACGAGACTCAACTCCCTA 59.925 52.381 2.82 0.00 33.83 3.53
2455 2558 2.168496 CCACGAGACTCAACTCCCTAA 58.832 52.381 2.82 0.00 33.83 2.69
2456 2559 2.094649 CCACGAGACTCAACTCCCTAAC 60.095 54.545 2.82 0.00 33.83 2.34
2457 2560 2.094649 CACGAGACTCAACTCCCTAACC 60.095 54.545 2.82 0.00 33.83 2.85
2458 2561 1.477295 CGAGACTCAACTCCCTAACCC 59.523 57.143 2.82 0.00 33.83 4.11
2459 2562 2.822697 GAGACTCAACTCCCTAACCCT 58.177 52.381 0.00 0.00 0.00 4.34
2460 2563 3.624205 CGAGACTCAACTCCCTAACCCTA 60.624 52.174 2.82 0.00 33.83 3.53
2461 2564 4.351127 GAGACTCAACTCCCTAACCCTAA 58.649 47.826 0.00 0.00 0.00 2.69
2462 2565 4.759953 AGACTCAACTCCCTAACCCTAAA 58.240 43.478 0.00 0.00 0.00 1.85
2463 2566 4.531339 AGACTCAACTCCCTAACCCTAAAC 59.469 45.833 0.00 0.00 0.00 2.01
2464 2567 4.500452 ACTCAACTCCCTAACCCTAAACT 58.500 43.478 0.00 0.00 0.00 2.66
2465 2568 4.912133 ACTCAACTCCCTAACCCTAAACTT 59.088 41.667 0.00 0.00 0.00 2.66
2466 2569 6.086775 ACTCAACTCCCTAACCCTAAACTTA 58.913 40.000 0.00 0.00 0.00 2.24
2467 2570 6.734281 ACTCAACTCCCTAACCCTAAACTTAT 59.266 38.462 0.00 0.00 0.00 1.73
2468 2571 7.092979 ACTCAACTCCCTAACCCTAAACTTATC 60.093 40.741 0.00 0.00 0.00 1.75
2469 2572 6.731919 TCAACTCCCTAACCCTAAACTTATCA 59.268 38.462 0.00 0.00 0.00 2.15
2470 2573 7.404980 TCAACTCCCTAACCCTAAACTTATCAT 59.595 37.037 0.00 0.00 0.00 2.45
2471 2574 7.766736 ACTCCCTAACCCTAAACTTATCATT 57.233 36.000 0.00 0.00 0.00 2.57
2472 2575 8.171337 ACTCCCTAACCCTAAACTTATCATTT 57.829 34.615 0.00 0.00 0.00 2.32
2473 2576 8.272889 ACTCCCTAACCCTAAACTTATCATTTC 58.727 37.037 0.00 0.00 0.00 2.17
2474 2577 7.580007 TCCCTAACCCTAAACTTATCATTTCC 58.420 38.462 0.00 0.00 0.00 3.13
2475 2578 7.407918 TCCCTAACCCTAAACTTATCATTTCCT 59.592 37.037 0.00 0.00 0.00 3.36
2476 2579 7.720074 CCCTAACCCTAAACTTATCATTTCCTC 59.280 40.741 0.00 0.00 0.00 3.71
2477 2580 8.495260 CCTAACCCTAAACTTATCATTTCCTCT 58.505 37.037 0.00 0.00 0.00 3.69
2481 2584 9.853177 ACCCTAAACTTATCATTTCCTCTAATG 57.147 33.333 0.00 0.00 36.95 1.90
2482 2585 8.787852 CCCTAAACTTATCATTTCCTCTAATGC 58.212 37.037 0.00 0.00 35.86 3.56
2483 2586 8.499162 CCTAAACTTATCATTTCCTCTAATGCG 58.501 37.037 0.00 0.00 35.86 4.73
2484 2587 5.931441 ACTTATCATTTCCTCTAATGCGC 57.069 39.130 0.00 0.00 35.86 6.09
2485 2588 5.368145 ACTTATCATTTCCTCTAATGCGCA 58.632 37.500 14.96 14.96 35.86 6.09
2486 2589 5.822519 ACTTATCATTTCCTCTAATGCGCAA 59.177 36.000 17.11 0.00 35.86 4.85
2487 2590 6.488006 ACTTATCATTTCCTCTAATGCGCAAT 59.512 34.615 17.11 9.36 35.86 3.56
2488 2591 4.556942 TCATTTCCTCTAATGCGCAATG 57.443 40.909 17.11 10.59 35.86 2.82
2489 2592 3.316029 TCATTTCCTCTAATGCGCAATGG 59.684 43.478 17.11 8.79 35.86 3.16
2490 2593 1.679139 TTCCTCTAATGCGCAATGGG 58.321 50.000 17.11 12.83 0.00 4.00
2491 2594 0.819259 TCCTCTAATGCGCAATGGGC 60.819 55.000 17.11 15.68 41.94 5.36
2497 2600 4.340019 TGCGCAATGGGCACAACG 62.340 61.111 21.10 0.00 46.09 4.10
2499 2602 4.340019 CGCAATGGGCACAACGCA 62.340 61.111 12.82 0.00 46.44 5.24
2500 2603 2.431260 GCAATGGGCACAACGCAG 60.431 61.111 8.01 0.00 45.48 5.18
2501 2604 2.918345 GCAATGGGCACAACGCAGA 61.918 57.895 8.01 0.00 45.48 4.26
2502 2605 1.081242 CAATGGGCACAACGCAGAC 60.081 57.895 0.00 0.00 45.48 3.51
2503 2606 2.616330 AATGGGCACAACGCAGACG 61.616 57.895 0.00 0.00 45.48 4.18
2504 2607 3.529341 ATGGGCACAACGCAGACGA 62.529 57.895 0.00 0.00 45.48 4.20
2505 2608 3.414700 GGGCACAACGCAGACGAG 61.415 66.667 0.00 0.00 45.17 4.18
2506 2609 4.077188 GGCACAACGCAGACGAGC 62.077 66.667 0.00 0.00 45.17 5.03
2507 2610 3.038417 GCACAACGCAGACGAGCT 61.038 61.111 0.00 0.00 43.93 4.09
2508 2611 1.733041 GCACAACGCAGACGAGCTA 60.733 57.895 0.00 0.00 43.93 3.32
2509 2612 1.945776 GCACAACGCAGACGAGCTAC 61.946 60.000 0.00 0.00 43.93 3.58
2510 2613 0.387367 CACAACGCAGACGAGCTACT 60.387 55.000 0.00 0.00 43.93 2.57
2511 2614 0.109689 ACAACGCAGACGAGCTACTC 60.110 55.000 0.00 0.00 43.93 2.59
2512 2615 0.798771 CAACGCAGACGAGCTACTCC 60.799 60.000 0.00 0.00 43.93 3.85
2513 2616 1.935327 AACGCAGACGAGCTACTCCC 61.935 60.000 0.00 0.00 43.93 4.30
2514 2617 2.115911 CGCAGACGAGCTACTCCCT 61.116 63.158 0.00 0.00 43.93 4.20
2515 2618 1.658686 CGCAGACGAGCTACTCCCTT 61.659 60.000 0.00 0.00 43.93 3.95
2516 2619 1.390565 GCAGACGAGCTACTCCCTTA 58.609 55.000 0.00 0.00 0.00 2.69
2517 2620 1.335496 GCAGACGAGCTACTCCCTTAG 59.665 57.143 0.00 0.00 0.00 2.18
2518 2621 1.335496 CAGACGAGCTACTCCCTTAGC 59.665 57.143 0.00 0.00 44.27 3.09
2519 2622 0.669619 GACGAGCTACTCCCTTAGCC 59.330 60.000 0.00 0.00 44.93 3.93
2520 2623 0.033405 ACGAGCTACTCCCTTAGCCA 60.033 55.000 0.00 0.00 44.93 4.75
2521 2624 1.333177 CGAGCTACTCCCTTAGCCAT 58.667 55.000 0.00 0.00 44.93 4.40
2522 2625 2.158505 ACGAGCTACTCCCTTAGCCATA 60.159 50.000 0.00 0.00 44.93 2.74
2523 2626 2.229302 CGAGCTACTCCCTTAGCCATAC 59.771 54.545 0.00 0.00 44.93 2.39
2524 2627 3.231818 GAGCTACTCCCTTAGCCATACA 58.768 50.000 0.00 0.00 44.93 2.29
2525 2628 3.641906 GAGCTACTCCCTTAGCCATACAA 59.358 47.826 0.00 0.00 44.93 2.41
2526 2629 4.235372 AGCTACTCCCTTAGCCATACAAT 58.765 43.478 0.00 0.00 44.93 2.71
2527 2630 4.040952 AGCTACTCCCTTAGCCATACAATG 59.959 45.833 0.00 0.00 44.93 2.82
2544 2647 2.925578 ATGGTCATTGAATGCGTGTG 57.074 45.000 0.00 0.00 0.00 3.82
2545 2648 1.889545 TGGTCATTGAATGCGTGTGA 58.110 45.000 0.00 0.00 0.00 3.58
2546 2649 2.435422 TGGTCATTGAATGCGTGTGAT 58.565 42.857 0.00 0.00 0.00 3.06
2547 2650 2.162008 TGGTCATTGAATGCGTGTGATG 59.838 45.455 0.00 0.00 0.00 3.07
2548 2651 2.179589 GTCATTGAATGCGTGTGATGC 58.820 47.619 0.00 0.00 0.00 3.91
2549 2652 1.811359 TCATTGAATGCGTGTGATGCA 59.189 42.857 0.00 0.00 45.17 3.96
2550 2653 2.228343 TCATTGAATGCGTGTGATGCAA 59.772 40.909 0.00 0.00 44.15 4.08
2551 2654 2.789491 TTGAATGCGTGTGATGCAAA 57.211 40.000 0.00 0.00 44.15 3.68
2552 2655 3.300852 TTGAATGCGTGTGATGCAAAT 57.699 38.095 0.00 0.00 44.15 2.32
2553 2656 3.300852 TGAATGCGTGTGATGCAAATT 57.699 38.095 0.00 0.00 44.15 1.82
2554 2657 3.244156 TGAATGCGTGTGATGCAAATTC 58.756 40.909 0.00 0.00 44.15 2.17
2555 2658 3.244156 GAATGCGTGTGATGCAAATTCA 58.756 40.909 0.00 0.00 44.15 2.57
2556 2659 2.334971 TGCGTGTGATGCAAATTCAG 57.665 45.000 0.00 0.00 37.15 3.02
2557 2660 1.068402 TGCGTGTGATGCAAATTCAGG 60.068 47.619 0.00 0.00 37.15 3.86
2558 2661 1.733389 GCGTGTGATGCAAATTCAGGG 60.733 52.381 0.00 0.00 0.00 4.45
2559 2662 1.135315 CGTGTGATGCAAATTCAGGGG 60.135 52.381 0.00 0.00 0.00 4.79
2560 2663 0.896923 TGTGATGCAAATTCAGGGGC 59.103 50.000 0.00 0.00 0.00 5.80
2561 2664 0.176449 GTGATGCAAATTCAGGGGCC 59.824 55.000 0.00 0.00 0.00 5.80
2562 2665 0.041535 TGATGCAAATTCAGGGGCCT 59.958 50.000 0.84 0.00 0.00 5.19
2563 2666 1.287442 TGATGCAAATTCAGGGGCCTA 59.713 47.619 0.84 0.00 0.00 3.93
2564 2667 2.292126 TGATGCAAATTCAGGGGCCTAA 60.292 45.455 0.84 0.00 0.00 2.69
2565 2668 2.548464 TGCAAATTCAGGGGCCTAAT 57.452 45.000 0.84 0.00 0.00 1.73
2566 2669 2.387757 TGCAAATTCAGGGGCCTAATC 58.612 47.619 0.84 0.00 0.00 1.75
2567 2670 1.688735 GCAAATTCAGGGGCCTAATCC 59.311 52.381 0.84 0.00 0.00 3.01
2568 2671 2.954539 GCAAATTCAGGGGCCTAATCCA 60.955 50.000 0.84 0.00 0.00 3.41
2569 2672 2.695147 CAAATTCAGGGGCCTAATCCAC 59.305 50.000 0.84 0.00 0.00 4.02
2570 2673 1.912862 ATTCAGGGGCCTAATCCACT 58.087 50.000 0.84 0.00 41.52 4.00
2571 2674 1.681229 TTCAGGGGCCTAATCCACTT 58.319 50.000 0.84 0.00 37.92 3.16
2572 2675 1.681229 TCAGGGGCCTAATCCACTTT 58.319 50.000 0.84 0.00 37.92 2.66
2573 2676 1.564348 TCAGGGGCCTAATCCACTTTC 59.436 52.381 0.84 0.00 37.92 2.62
2574 2677 0.546598 AGGGGCCTAATCCACTTTCG 59.453 55.000 0.84 0.00 36.13 3.46
2575 2678 0.255033 GGGGCCTAATCCACTTTCGT 59.745 55.000 0.84 0.00 0.00 3.85
2576 2679 1.379527 GGGCCTAATCCACTTTCGTG 58.620 55.000 0.84 0.00 40.89 4.35
2577 2680 1.065709 GGGCCTAATCCACTTTCGTGA 60.066 52.381 0.84 0.00 43.97 4.35
2578 2681 2.421529 GGGCCTAATCCACTTTCGTGAT 60.422 50.000 0.84 0.00 43.97 3.06
2579 2682 2.872858 GGCCTAATCCACTTTCGTGATC 59.127 50.000 0.00 0.00 43.97 2.92
2580 2683 2.872858 GCCTAATCCACTTTCGTGATCC 59.127 50.000 0.00 0.00 43.97 3.36
2581 2684 3.432326 GCCTAATCCACTTTCGTGATCCT 60.432 47.826 0.00 0.00 43.97 3.24
2582 2685 4.202223 GCCTAATCCACTTTCGTGATCCTA 60.202 45.833 0.00 0.00 43.97 2.94
2583 2686 5.511545 GCCTAATCCACTTTCGTGATCCTAT 60.512 44.000 0.00 0.00 43.97 2.57
2584 2687 6.525629 CCTAATCCACTTTCGTGATCCTATT 58.474 40.000 0.00 0.00 43.97 1.73
2585 2688 6.992715 CCTAATCCACTTTCGTGATCCTATTT 59.007 38.462 0.00 0.00 43.97 1.40
2586 2689 7.499232 CCTAATCCACTTTCGTGATCCTATTTT 59.501 37.037 0.00 0.00 43.97 1.82
2587 2690 9.542462 CTAATCCACTTTCGTGATCCTATTTTA 57.458 33.333 0.00 0.00 43.97 1.52
2588 2691 8.438676 AATCCACTTTCGTGATCCTATTTTAG 57.561 34.615 0.00 0.00 43.97 1.85
2589 2692 6.346096 TCCACTTTCGTGATCCTATTTTAGG 58.654 40.000 0.00 0.00 44.46 2.69
2590 2693 6.155565 TCCACTTTCGTGATCCTATTTTAGGA 59.844 38.462 5.77 5.77 46.98 2.94
2636 2739 6.664428 TTTGAGAAATTAACTTGGGAAGGG 57.336 37.500 0.00 0.00 0.00 3.95
2637 2740 4.086457 TGAGAAATTAACTTGGGAAGGGC 58.914 43.478 0.00 0.00 0.00 5.19
2638 2741 4.086457 GAGAAATTAACTTGGGAAGGGCA 58.914 43.478 0.00 0.00 0.00 5.36
2639 2742 4.687976 AGAAATTAACTTGGGAAGGGCAT 58.312 39.130 0.00 0.00 0.00 4.40
2640 2743 4.467438 AGAAATTAACTTGGGAAGGGCATG 59.533 41.667 0.00 0.00 0.00 4.06
2641 2744 3.756082 ATTAACTTGGGAAGGGCATGA 57.244 42.857 0.00 0.00 0.00 3.07
2642 2745 3.756082 TTAACTTGGGAAGGGCATGAT 57.244 42.857 0.00 0.00 0.00 2.45
2643 2746 2.629017 AACTTGGGAAGGGCATGATT 57.371 45.000 0.00 0.00 0.00 2.57
2644 2747 2.629017 ACTTGGGAAGGGCATGATTT 57.371 45.000 0.00 0.00 0.00 2.17
2645 2748 2.906568 ACTTGGGAAGGGCATGATTTT 58.093 42.857 0.00 0.00 0.00 1.82
2646 2749 2.568509 ACTTGGGAAGGGCATGATTTTG 59.431 45.455 0.00 0.00 0.00 2.44
2647 2750 0.903942 TGGGAAGGGCATGATTTTGC 59.096 50.000 0.00 0.00 42.01 3.68
2648 2751 0.179103 GGGAAGGGCATGATTTTGCG 60.179 55.000 0.00 0.00 43.71 4.85
2649 2752 0.532115 GGAAGGGCATGATTTTGCGT 59.468 50.000 0.00 0.00 43.71 5.24
2650 2753 1.632422 GAAGGGCATGATTTTGCGTG 58.368 50.000 0.00 0.00 43.71 5.34
2659 2762 5.794650 CATGATTTTGCGTGCATATACAC 57.205 39.130 0.00 0.00 37.19 2.90
2660 2763 4.954092 TGATTTTGCGTGCATATACACA 57.046 36.364 6.87 0.00 40.73 3.72
2661 2764 4.907579 TGATTTTGCGTGCATATACACAG 58.092 39.130 6.87 1.12 40.73 3.66
2662 2765 4.394610 TGATTTTGCGTGCATATACACAGT 59.605 37.500 6.87 0.00 40.73 3.55
2663 2766 4.757799 TTTTGCGTGCATATACACAGTT 57.242 36.364 6.87 0.00 40.73 3.16
2664 2767 5.864628 TTTTGCGTGCATATACACAGTTA 57.135 34.783 6.87 0.00 40.73 2.24
2665 2768 6.429791 TTTTGCGTGCATATACACAGTTAT 57.570 33.333 6.87 0.00 40.73 1.89
2666 2769 5.402464 TTGCGTGCATATACACAGTTATG 57.598 39.130 6.87 0.00 40.73 1.90
2667 2770 4.438148 TGCGTGCATATACACAGTTATGT 58.562 39.130 6.87 0.00 40.73 2.29
2668 2771 5.593010 TGCGTGCATATACACAGTTATGTA 58.407 37.500 6.87 0.00 40.73 2.29
2669 2772 6.043411 TGCGTGCATATACACAGTTATGTAA 58.957 36.000 6.87 0.00 40.73 2.41
2670 2773 6.019398 TGCGTGCATATACACAGTTATGTAAC 60.019 38.462 6.87 0.00 40.73 2.50
2671 2774 6.563381 GCGTGCATATACACAGTTATGTAACC 60.563 42.308 6.87 0.00 40.73 2.85
2672 2775 6.477360 CGTGCATATACACAGTTATGTAACCA 59.523 38.462 6.87 0.00 40.73 3.67
2673 2776 7.170828 CGTGCATATACACAGTTATGTAACCAT 59.829 37.037 6.87 0.00 40.73 3.55
2674 2777 8.495949 GTGCATATACACAGTTATGTAACCATC 58.504 37.037 0.93 0.00 38.53 3.51
2675 2778 8.428852 TGCATATACACAGTTATGTAACCATCT 58.571 33.333 0.00 0.00 38.53 2.90
2676 2779 9.923143 GCATATACACAGTTATGTAACCATCTA 57.077 33.333 0.00 0.00 38.53 1.98
2681 2784 8.818622 ACACAGTTATGTAACCATCTAGTAGA 57.181 34.615 1.45 1.45 37.65 2.59
2682 2785 9.422681 ACACAGTTATGTAACCATCTAGTAGAT 57.577 33.333 6.86 6.86 37.65 1.98
2683 2786 9.684448 CACAGTTATGTAACCATCTAGTAGATG 57.316 37.037 26.93 26.93 43.75 2.90
2684 2787 8.361139 ACAGTTATGTAACCATCTAGTAGATGC 58.639 37.037 28.03 17.63 43.28 3.91
2697 2800 7.857734 TCTAGTAGATGCATCTATGAGTAGC 57.142 40.000 33.20 20.69 41.09 3.58
2698 2801 7.398024 TCTAGTAGATGCATCTATGAGTAGCA 58.602 38.462 33.20 17.92 41.09 3.49
2700 2803 9.336171 CTAGTAGATGCATCTATGAGTAGCATA 57.664 37.037 33.20 10.99 45.08 3.14
2701 2804 8.586879 AGTAGATGCATCTATGAGTAGCATAA 57.413 34.615 33.20 10.79 45.08 1.90
2702 2805 9.029368 AGTAGATGCATCTATGAGTAGCATAAA 57.971 33.333 33.20 10.37 45.08 1.40
2703 2806 9.645059 GTAGATGCATCTATGAGTAGCATAAAA 57.355 33.333 33.20 9.75 45.08 1.52
2707 2810 8.777865 TGCATCTATGAGTAGCATAAAATACC 57.222 34.615 0.00 0.00 38.92 2.73
2708 2811 8.597167 TGCATCTATGAGTAGCATAAAATACCT 58.403 33.333 0.00 0.00 38.92 3.08
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 5.649395 TCAAGATCTTTTGCCATGAACTAGG 59.351 40.000 4.86 0.00 0.00 3.02
74 76 8.462016 CCATGAATTAGAGATCGTTTCCTTTTT 58.538 33.333 0.00 0.00 0.00 1.94
75 77 7.611855 ACCATGAATTAGAGATCGTTTCCTTTT 59.388 33.333 0.00 0.00 0.00 2.27
173 176 5.669164 TGCCATGTCACTGTACTATGTTA 57.331 39.130 0.00 0.00 0.00 2.41
185 190 8.931385 ATTTACAAATAGAATTGCCATGTCAC 57.069 30.769 0.00 0.00 33.52 3.67
191 196 9.213799 GTGGAAAATTTACAAATAGAATTGCCA 57.786 29.630 0.00 0.00 33.52 4.92
201 206 9.928236 CATTTGTTTCGTGGAAAATTTACAAAT 57.072 25.926 14.35 14.35 37.92 2.32
204 209 6.535150 TGCATTTGTTTCGTGGAAAATTTACA 59.465 30.769 0.00 0.00 33.14 2.41
205 210 6.938542 TGCATTTGTTTCGTGGAAAATTTAC 58.061 32.000 0.00 0.00 33.14 2.01
206 211 7.721286 ATGCATTTGTTTCGTGGAAAATTTA 57.279 28.000 0.00 0.00 33.14 1.40
210 215 5.837437 ACTATGCATTTGTTTCGTGGAAAA 58.163 33.333 3.54 0.00 33.14 2.29
265 270 1.560860 GGTCAGCTCGTTGTGCTCAC 61.561 60.000 0.00 0.00 38.92 3.51
279 284 3.988379 TTGCTAGCAAGTTTTGGTCAG 57.012 42.857 26.06 0.00 42.20 3.51
280 285 4.935352 ATTTGCTAGCAAGTTTTGGTCA 57.065 36.364 27.82 12.20 42.20 4.02
281 286 7.281991 CATAATTTGCTAGCAAGTTTTGGTC 57.718 36.000 34.09 0.00 42.20 4.02
307 312 2.888834 ATCAACTTTGTTGTGCCCAC 57.111 45.000 9.78 0.00 0.00 4.61
346 351 5.359716 TCATGCAATTTGCCATTCAAAAC 57.640 34.783 18.27 0.00 46.60 2.43
350 355 4.833390 TGAATCATGCAATTTGCCATTCA 58.167 34.783 23.34 23.34 44.23 2.57
376 381 3.726291 ACTTTGTTGTGCCCATGTTAC 57.274 42.857 0.00 0.00 0.00 2.50
378 383 2.499289 TCAACTTTGTTGTGCCCATGTT 59.501 40.909 9.78 0.00 0.00 2.71
400 405 3.429547 CGCTACCTTGTACAGCTCTGAAT 60.430 47.826 3.60 0.00 33.03 2.57
407 412 1.696832 GCAGCGCTACCTTGTACAGC 61.697 60.000 10.99 0.35 0.00 4.40
415 420 1.817099 GCTCATTGCAGCGCTACCT 60.817 57.895 10.99 0.00 42.31 3.08
416 421 2.711924 GCTCATTGCAGCGCTACC 59.288 61.111 10.99 4.69 42.31 3.18
432 438 4.035675 GTGCCCATGTATCTTTCTAACTGC 59.964 45.833 0.00 0.00 0.00 4.40
433 439 5.185454 TGTGCCCATGTATCTTTCTAACTG 58.815 41.667 0.00 0.00 0.00 3.16
437 443 5.628797 TGATGTGCCCATGTATCTTTCTA 57.371 39.130 0.00 0.00 0.00 2.10
463 469 4.221262 AGCACTACATTTGCCACAATTCAT 59.779 37.500 0.00 0.00 41.18 2.57
471 477 1.912731 TCCCTAGCACTACATTTGCCA 59.087 47.619 0.00 0.00 41.18 4.92
496 502 9.661187 CTGTCACTTCTAAATCATGCAATATTC 57.339 33.333 0.00 0.00 0.00 1.75
507 513 4.081420 TCCCTGCTCTGTCACTTCTAAATC 60.081 45.833 0.00 0.00 0.00 2.17
511 517 2.604912 TCCCTGCTCTGTCACTTCTA 57.395 50.000 0.00 0.00 0.00 2.10
528 534 1.606737 GGTAGGCGCTCATTCTCATCC 60.607 57.143 7.64 0.00 0.00 3.51
529 535 1.606737 GGGTAGGCGCTCATTCTCATC 60.607 57.143 7.64 0.00 0.00 2.92
544 550 3.000727 GTCATCAAGTGGAAACGGGTAG 58.999 50.000 0.00 0.00 0.00 3.18
546 552 1.142060 TGTCATCAAGTGGAAACGGGT 59.858 47.619 0.00 0.00 0.00 5.28
549 555 4.378770 CCTTCATGTCATCAAGTGGAAACG 60.379 45.833 0.00 0.00 0.00 3.60
562 568 2.092699 TGTTGTGGTGTCCTTCATGTCA 60.093 45.455 0.00 0.00 0.00 3.58
574 580 3.427503 GGTGACTTTCAAGTGTTGTGGTG 60.428 47.826 0.00 0.00 39.88 4.17
592 598 1.615424 GTCTTGGGGCTAGGGGTGA 60.615 63.158 0.00 0.00 0.00 4.02
600 606 0.178961 GGTCCTTTTGTCTTGGGGCT 60.179 55.000 0.00 0.00 0.00 5.19
601 607 1.524008 CGGTCCTTTTGTCTTGGGGC 61.524 60.000 0.00 0.00 0.00 5.80
644 650 1.888436 ATGGACTTCTGGAGCGCGAA 61.888 55.000 12.10 0.00 0.00 4.70
650 656 2.746362 GCTTTGTGATGGACTTCTGGAG 59.254 50.000 0.00 0.00 0.00 3.86
657 663 1.675641 GGGCGCTTTGTGATGGACT 60.676 57.895 7.64 0.00 0.00 3.85
659 665 0.825425 TTTGGGCGCTTTGTGATGGA 60.825 50.000 7.64 0.00 0.00 3.41
679 685 4.602259 CACCGTGGACGCTGTGGT 62.602 66.667 0.00 0.00 38.18 4.16
681 687 2.279851 TTCACCGTGGACGCTGTG 60.280 61.111 0.00 1.66 38.18 3.66
682 688 2.279918 GTTCACCGTGGACGCTGT 60.280 61.111 0.00 0.00 38.18 4.40
683 689 3.403057 CGTTCACCGTGGACGCTG 61.403 66.667 19.05 0.00 38.18 5.18
684 690 2.814183 GATCGTTCACCGTGGACGCT 62.814 60.000 24.87 17.20 36.77 5.07
685 691 2.431942 ATCGTTCACCGTGGACGC 60.432 61.111 24.87 0.82 36.77 5.19
686 692 0.388134 AAGATCGTTCACCGTGGACG 60.388 55.000 23.92 23.92 37.94 4.79
687 693 1.068474 CAAGATCGTTCACCGTGGAC 58.932 55.000 0.00 0.00 37.94 4.02
688 694 0.669318 GCAAGATCGTTCACCGTGGA 60.669 55.000 0.00 0.00 37.94 4.02
690 696 0.716108 GAGCAAGATCGTTCACCGTG 59.284 55.000 0.00 0.00 37.94 4.94
691 697 0.389948 GGAGCAAGATCGTTCACCGT 60.390 55.000 0.00 0.00 37.94 4.83
692 698 0.389817 TGGAGCAAGATCGTTCACCG 60.390 55.000 0.00 0.00 38.13 4.94
693 699 1.734465 CTTGGAGCAAGATCGTTCACC 59.266 52.381 0.00 0.00 43.42 4.02
703 709 1.129998 CAGCACGAATCTTGGAGCAAG 59.870 52.381 0.00 0.00 42.25 4.01
704 710 1.159285 CAGCACGAATCTTGGAGCAA 58.841 50.000 0.00 0.00 0.00 3.91
705 711 1.300971 GCAGCACGAATCTTGGAGCA 61.301 55.000 0.00 0.00 0.00 4.26
706 712 1.427020 GCAGCACGAATCTTGGAGC 59.573 57.895 0.00 0.00 0.00 4.70
718 744 3.545481 CGTCGGATCACGCAGCAC 61.545 66.667 0.00 0.00 43.86 4.40
733 759 5.345702 TGCAGCGAACTACTTTATAATCGT 58.654 37.500 5.96 0.87 33.18 3.73
734 760 5.883328 TGCAGCGAACTACTTTATAATCG 57.117 39.130 0.00 0.61 0.00 3.34
737 763 6.793203 CGTTTTTGCAGCGAACTACTTTATAA 59.207 34.615 0.00 0.00 0.00 0.98
741 767 3.181504 ACGTTTTTGCAGCGAACTACTTT 60.182 39.130 0.00 0.00 0.00 2.66
747 773 1.851984 GCGACGTTTTTGCAGCGAAC 61.852 55.000 0.00 0.00 34.24 3.95
749 775 2.052590 GCGACGTTTTTGCAGCGA 60.053 55.556 8.57 0.00 34.24 4.93
766 796 4.812091 ACTACTATCTAGCTGACGTCACAG 59.188 45.833 15.76 12.02 40.43 3.66
791 822 3.061697 CGGGCACTTGTCTACGAAAATAC 59.938 47.826 0.00 0.00 0.00 1.89
793 824 2.073816 CGGGCACTTGTCTACGAAAAT 58.926 47.619 0.00 0.00 0.00 1.82
794 825 1.068895 TCGGGCACTTGTCTACGAAAA 59.931 47.619 0.00 0.00 0.00 2.29
795 826 0.675083 TCGGGCACTTGTCTACGAAA 59.325 50.000 0.00 0.00 0.00 3.46
796 827 0.892755 ATCGGGCACTTGTCTACGAA 59.107 50.000 0.00 0.00 33.86 3.85
797 828 0.454600 GATCGGGCACTTGTCTACGA 59.545 55.000 0.00 0.00 34.70 3.43
847 881 2.350895 CCGATTGGTGTGGGAGCA 59.649 61.111 0.00 0.00 0.00 4.26
906 942 2.674084 GCGACCGTTCGGGGAAAAG 61.674 63.158 15.66 1.80 45.98 2.27
934 971 2.357881 GGGGAAACGTGACCGACC 60.358 66.667 0.00 0.00 37.88 4.79
1018 1056 0.322456 CGGGATTTGCTGGGAACTCA 60.322 55.000 0.00 0.00 0.00 3.41
1054 1098 3.379452 CCATCTCTCCTTGGTAGGTTCT 58.621 50.000 0.00 0.00 42.60 3.01
1060 1104 1.823295 GCGCCATCTCTCCTTGGTA 59.177 57.895 0.00 0.00 35.34 3.25
1183 1239 1.523758 AACAGCAACTGATCGGAACC 58.476 50.000 9.00 0.00 35.18 3.62
1189 1269 2.072298 AGAGCGAAACAGCAACTGATC 58.928 47.619 0.78 0.00 40.15 2.92
1190 1270 2.175878 AGAGCGAAACAGCAACTGAT 57.824 45.000 0.78 0.00 40.15 2.90
1191 1271 1.867233 GAAGAGCGAAACAGCAACTGA 59.133 47.619 0.78 0.00 40.15 3.41
1192 1272 1.069636 GGAAGAGCGAAACAGCAACTG 60.070 52.381 0.00 0.00 40.15 3.16
1193 1273 1.230324 GGAAGAGCGAAACAGCAACT 58.770 50.000 0.00 0.00 40.15 3.16
1194 1274 0.110644 CGGAAGAGCGAAACAGCAAC 60.111 55.000 0.00 0.00 40.15 4.17
1195 1275 0.249699 TCGGAAGAGCGAAACAGCAA 60.250 50.000 0.00 0.00 40.15 3.91
1196 1276 1.365999 TCGGAAGAGCGAAACAGCA 59.634 52.632 0.00 0.00 40.15 4.41
1197 1277 4.261888 TCGGAAGAGCGAAACAGC 57.738 55.556 0.00 0.00 34.84 4.40
1208 1288 2.159787 CGAAACAGCAACAGATCGGAAG 60.160 50.000 0.00 0.00 0.00 3.46
1209 1289 1.798223 CGAAACAGCAACAGATCGGAA 59.202 47.619 0.00 0.00 0.00 4.30
1210 1290 1.428448 CGAAACAGCAACAGATCGGA 58.572 50.000 0.00 0.00 0.00 4.55
1211 1291 0.179215 GCGAAACAGCAACAGATCGG 60.179 55.000 0.00 0.00 37.05 4.18
1212 1292 0.792640 AGCGAAACAGCAACAGATCG 59.207 50.000 0.00 0.00 40.15 3.69
1241 1321 1.757682 AAAGGAAACGGCAAGACACA 58.242 45.000 0.00 0.00 0.00 3.72
1246 1326 1.602920 GCCTGAAAAGGAAACGGCAAG 60.603 52.381 0.00 0.00 37.48 4.01
1294 1379 1.002011 GTGGGGCTTCTTCACTCCC 60.002 63.158 0.00 0.00 38.03 4.30
1297 1382 2.750350 CGGTGGGGCTTCTTCACT 59.250 61.111 0.00 0.00 0.00 3.41
1621 1713 1.169661 TTGCGACAAAGGGCACGATT 61.170 50.000 0.00 0.00 39.20 3.34
1682 1785 6.581712 TCACAATCCTTCATTATCACGATCA 58.418 36.000 0.00 0.00 0.00 2.92
1711 1814 9.803315 GCAATCCTTCATTATCACGATACTATA 57.197 33.333 0.00 0.00 0.00 1.31
1712 1815 8.535335 AGCAATCCTTCATTATCACGATACTAT 58.465 33.333 0.00 0.00 0.00 2.12
1713 1816 7.896811 AGCAATCCTTCATTATCACGATACTA 58.103 34.615 0.00 0.00 0.00 1.82
1714 1817 6.763355 AGCAATCCTTCATTATCACGATACT 58.237 36.000 0.00 0.00 0.00 2.12
1715 1818 7.426929 AAGCAATCCTTCATTATCACGATAC 57.573 36.000 0.00 0.00 0.00 2.24
1837 1940 9.276590 CAATTGCTCAGTACTGATATCCATAAA 57.723 33.333 25.35 11.27 39.13 1.40
1870 1973 2.975851 GCATCAAAGAACAGAAAGCACG 59.024 45.455 0.00 0.00 0.00 5.34
1896 1999 3.558931 AAGCAAAGGGGAAAAACCAAG 57.441 42.857 0.00 0.00 41.20 3.61
1899 2002 3.275617 ACAAAGCAAAGGGGAAAAACC 57.724 42.857 0.00 0.00 38.08 3.27
1907 2010 8.376889 ACAATTACAAATTACAAAGCAAAGGG 57.623 30.769 0.00 0.00 0.00 3.95
1908 2011 9.039870 TGACAATTACAAATTACAAAGCAAAGG 57.960 29.630 0.00 0.00 0.00 3.11
1922 2025 7.450014 ACCCAGTGATATTGTGACAATTACAAA 59.550 33.333 16.75 0.00 40.95 2.83
1923 2026 6.945435 ACCCAGTGATATTGTGACAATTACAA 59.055 34.615 16.75 0.00 41.72 2.41
1924 2027 6.374053 CACCCAGTGATATTGTGACAATTACA 59.626 38.462 16.75 13.35 35.23 2.41
1925 2028 6.677920 GCACCCAGTGATATTGTGACAATTAC 60.678 42.308 16.75 12.75 35.23 1.89
1926 2029 5.356751 GCACCCAGTGATATTGTGACAATTA 59.643 40.000 16.75 3.29 35.23 1.40
1927 2030 4.158394 GCACCCAGTGATATTGTGACAATT 59.842 41.667 16.75 4.53 35.23 2.32
1928 2031 3.696051 GCACCCAGTGATATTGTGACAAT 59.304 43.478 15.80 15.80 35.23 2.71
1929 2032 3.081061 GCACCCAGTGATATTGTGACAA 58.919 45.455 0.00 0.00 35.23 3.18
1930 2033 2.305635 AGCACCCAGTGATATTGTGACA 59.694 45.455 0.00 0.00 35.23 3.58
1931 2034 2.679837 CAGCACCCAGTGATATTGTGAC 59.320 50.000 0.00 0.00 35.23 3.67
1932 2035 2.305635 ACAGCACCCAGTGATATTGTGA 59.694 45.455 0.00 0.00 35.23 3.58
1933 2036 2.679837 GACAGCACCCAGTGATATTGTG 59.320 50.000 0.00 0.00 35.23 3.33
1934 2037 2.573462 AGACAGCACCCAGTGATATTGT 59.427 45.455 0.00 0.00 35.23 2.71
1935 2038 2.941064 CAGACAGCACCCAGTGATATTG 59.059 50.000 0.00 0.00 35.23 1.90
1936 2039 2.092753 CCAGACAGCACCCAGTGATATT 60.093 50.000 0.00 0.00 35.23 1.28
1937 2040 1.487976 CCAGACAGCACCCAGTGATAT 59.512 52.381 0.00 0.00 35.23 1.63
1938 2041 0.904649 CCAGACAGCACCCAGTGATA 59.095 55.000 0.00 0.00 35.23 2.15
1939 2042 1.130054 ACCAGACAGCACCCAGTGAT 61.130 55.000 0.00 0.00 35.23 3.06
1940 2043 1.758440 GACCAGACAGCACCCAGTGA 61.758 60.000 0.00 0.00 35.23 3.41
1941 2044 1.302033 GACCAGACAGCACCCAGTG 60.302 63.158 0.00 0.00 36.51 3.66
1942 2045 1.344953 TTGACCAGACAGCACCCAGT 61.345 55.000 0.00 0.00 0.00 4.00
1943 2046 0.037303 ATTGACCAGACAGCACCCAG 59.963 55.000 0.00 0.00 0.00 4.45
1944 2047 0.250858 CATTGACCAGACAGCACCCA 60.251 55.000 0.00 0.00 0.00 4.51
1945 2048 0.036732 TCATTGACCAGACAGCACCC 59.963 55.000 0.00 0.00 0.00 4.61
1946 2049 1.808945 CTTCATTGACCAGACAGCACC 59.191 52.381 0.00 0.00 0.00 5.01
1947 2050 1.808945 CCTTCATTGACCAGACAGCAC 59.191 52.381 0.00 0.00 0.00 4.40
1948 2051 1.699083 TCCTTCATTGACCAGACAGCA 59.301 47.619 0.00 0.00 0.00 4.41
1949 2052 2.479566 TCCTTCATTGACCAGACAGC 57.520 50.000 0.00 0.00 0.00 4.40
1950 2053 4.763793 ACAAATCCTTCATTGACCAGACAG 59.236 41.667 0.00 0.00 0.00 3.51
1951 2054 4.728772 ACAAATCCTTCATTGACCAGACA 58.271 39.130 0.00 0.00 0.00 3.41
1952 2055 4.142816 CGACAAATCCTTCATTGACCAGAC 60.143 45.833 0.00 0.00 0.00 3.51
1953 2056 4.002982 CGACAAATCCTTCATTGACCAGA 58.997 43.478 0.00 0.00 0.00 3.86
1954 2057 3.127548 CCGACAAATCCTTCATTGACCAG 59.872 47.826 0.00 0.00 0.00 4.00
1955 2058 3.081061 CCGACAAATCCTTCATTGACCA 58.919 45.455 0.00 0.00 0.00 4.02
1956 2059 2.423538 CCCGACAAATCCTTCATTGACC 59.576 50.000 0.00 0.00 0.00 4.02
1957 2060 2.423538 CCCCGACAAATCCTTCATTGAC 59.576 50.000 0.00 0.00 0.00 3.18
1958 2061 2.722094 CCCCGACAAATCCTTCATTGA 58.278 47.619 0.00 0.00 0.00 2.57
1959 2062 1.134946 GCCCCGACAAATCCTTCATTG 59.865 52.381 0.00 0.00 0.00 2.82
1960 2063 1.272425 TGCCCCGACAAATCCTTCATT 60.272 47.619 0.00 0.00 0.00 2.57
1961 2064 0.331278 TGCCCCGACAAATCCTTCAT 59.669 50.000 0.00 0.00 0.00 2.57
1962 2065 0.331278 ATGCCCCGACAAATCCTTCA 59.669 50.000 0.00 0.00 0.00 3.02
1963 2066 1.025041 GATGCCCCGACAAATCCTTC 58.975 55.000 0.00 0.00 0.00 3.46
1964 2067 0.748005 CGATGCCCCGACAAATCCTT 60.748 55.000 0.00 0.00 0.00 3.36
1965 2068 1.153168 CGATGCCCCGACAAATCCT 60.153 57.895 0.00 0.00 0.00 3.24
1966 2069 2.186826 CCGATGCCCCGACAAATCC 61.187 63.158 0.00 0.00 0.00 3.01
1967 2070 1.153249 TCCGATGCCCCGACAAATC 60.153 57.895 0.00 0.00 0.00 2.17
1968 2071 1.153168 CTCCGATGCCCCGACAAAT 60.153 57.895 0.00 0.00 0.00 2.32
1969 2072 2.267642 CTCCGATGCCCCGACAAA 59.732 61.111 0.00 0.00 0.00 2.83
1970 2073 3.781307 CCTCCGATGCCCCGACAA 61.781 66.667 0.00 0.00 0.00 3.18
1971 2074 4.770362 TCCTCCGATGCCCCGACA 62.770 66.667 0.00 0.00 0.00 4.35
1972 2075 2.325393 AAATCCTCCGATGCCCCGAC 62.325 60.000 0.00 0.00 0.00 4.79
1973 2076 1.632018 AAAATCCTCCGATGCCCCGA 61.632 55.000 0.00 0.00 0.00 5.14
1974 2077 0.107831 TAAAATCCTCCGATGCCCCG 59.892 55.000 0.00 0.00 0.00 5.73
1975 2078 1.545651 CCTAAAATCCTCCGATGCCCC 60.546 57.143 0.00 0.00 0.00 5.80
1976 2079 1.545651 CCCTAAAATCCTCCGATGCCC 60.546 57.143 0.00 0.00 0.00 5.36
1977 2080 1.143073 ACCCTAAAATCCTCCGATGCC 59.857 52.381 0.00 0.00 0.00 4.40
1978 2081 2.222027 CACCCTAAAATCCTCCGATGC 58.778 52.381 0.00 0.00 0.00 3.91
1979 2082 3.560636 ACACCCTAAAATCCTCCGATG 57.439 47.619 0.00 0.00 0.00 3.84
1980 2083 4.472108 TGTTACACCCTAAAATCCTCCGAT 59.528 41.667 0.00 0.00 0.00 4.18
1981 2084 3.839490 TGTTACACCCTAAAATCCTCCGA 59.161 43.478 0.00 0.00 0.00 4.55
1982 2085 3.937079 GTGTTACACCCTAAAATCCTCCG 59.063 47.826 3.79 0.00 0.00 4.63
1983 2086 4.698780 GTGTGTTACACCCTAAAATCCTCC 59.301 45.833 13.29 0.00 43.05 4.30
1984 2087 5.874895 GTGTGTTACACCCTAAAATCCTC 57.125 43.478 13.29 0.00 43.05 3.71
2008 2111 8.176814 GTGGAATTCACATTATCACAATTGTG 57.823 34.615 29.01 29.01 45.39 3.33
2367 2470 8.891720 GCCAAATAATTCAAATTGAGCCAAATA 58.108 29.630 0.00 0.00 0.00 1.40
2368 2471 7.414319 CGCCAAATAATTCAAATTGAGCCAAAT 60.414 33.333 0.00 0.00 0.00 2.32
2369 2472 6.128336 CGCCAAATAATTCAAATTGAGCCAAA 60.128 34.615 0.00 0.00 0.00 3.28
2370 2473 5.350914 CGCCAAATAATTCAAATTGAGCCAA 59.649 36.000 0.00 0.00 0.00 4.52
2371 2474 4.869297 CGCCAAATAATTCAAATTGAGCCA 59.131 37.500 0.00 0.00 0.00 4.75
2372 2475 4.260334 GCGCCAAATAATTCAAATTGAGCC 60.260 41.667 0.00 0.00 0.00 4.70
2373 2476 4.329528 TGCGCCAAATAATTCAAATTGAGC 59.670 37.500 4.18 0.00 0.00 4.26
2374 2477 5.501252 GCTGCGCCAAATAATTCAAATTGAG 60.501 40.000 4.18 0.00 0.00 3.02
2375 2478 4.329528 GCTGCGCCAAATAATTCAAATTGA 59.670 37.500 4.18 0.00 0.00 2.57
2376 2479 4.580528 GCTGCGCCAAATAATTCAAATTG 58.419 39.130 4.18 0.00 0.00 2.32
2377 2480 4.863152 GCTGCGCCAAATAATTCAAATT 57.137 36.364 4.18 0.00 0.00 1.82
2392 2495 1.917782 TTCATTACGTTGGGCTGCGC 61.918 55.000 10.06 10.06 0.00 6.09
2393 2496 0.096976 CTTCATTACGTTGGGCTGCG 59.903 55.000 0.00 0.00 0.00 5.18
2394 2497 0.451783 CCTTCATTACGTTGGGCTGC 59.548 55.000 0.00 0.00 0.00 5.25
2395 2498 1.821216 ACCTTCATTACGTTGGGCTG 58.179 50.000 0.00 0.00 0.00 4.85
2396 2499 2.433436 GAACCTTCATTACGTTGGGCT 58.567 47.619 0.00 0.00 0.00 5.19
2397 2500 1.471287 GGAACCTTCATTACGTTGGGC 59.529 52.381 0.00 0.00 0.00 5.36
2398 2501 3.067684 AGGAACCTTCATTACGTTGGG 57.932 47.619 0.00 0.00 0.00 4.12
2399 2502 7.041372 CCATAATAGGAACCTTCATTACGTTGG 60.041 40.741 0.00 0.72 0.00 3.77
2400 2503 7.497909 ACCATAATAGGAACCTTCATTACGTTG 59.502 37.037 0.00 0.00 0.00 4.10
2401 2504 7.571025 ACCATAATAGGAACCTTCATTACGTT 58.429 34.615 0.00 0.00 0.00 3.99
2402 2505 7.133133 ACCATAATAGGAACCTTCATTACGT 57.867 36.000 0.00 0.00 0.00 3.57
2403 2506 7.041372 CCAACCATAATAGGAACCTTCATTACG 60.041 40.741 0.00 0.00 0.00 3.18
2404 2507 7.996644 TCCAACCATAATAGGAACCTTCATTAC 59.003 37.037 0.00 0.00 0.00 1.89
2405 2508 8.108378 TCCAACCATAATAGGAACCTTCATTA 57.892 34.615 0.00 0.00 0.00 1.90
2406 2509 6.980577 TCCAACCATAATAGGAACCTTCATT 58.019 36.000 0.00 0.00 0.00 2.57
2407 2510 6.590656 TCCAACCATAATAGGAACCTTCAT 57.409 37.500 0.00 0.00 0.00 2.57
2408 2511 6.395780 TTCCAACCATAATAGGAACCTTCA 57.604 37.500 0.00 0.00 35.35 3.02
2409 2512 7.712204 TTTTCCAACCATAATAGGAACCTTC 57.288 36.000 0.00 0.00 39.69 3.46
2410 2513 7.038587 GGTTTTTCCAACCATAATAGGAACCTT 60.039 37.037 0.00 0.00 39.69 3.50
2411 2514 6.439375 GGTTTTTCCAACCATAATAGGAACCT 59.561 38.462 0.00 0.00 39.69 3.50
2412 2515 6.211785 TGGTTTTTCCAACCATAATAGGAACC 59.788 38.462 2.17 0.00 44.74 3.62
2413 2516 7.234661 TGGTTTTTCCAACCATAATAGGAAC 57.765 36.000 2.17 0.00 44.74 3.62
2427 2530 2.940410 GTTGAGTCTCGTGGTTTTTCCA 59.060 45.455 0.00 0.00 45.01 3.53
2428 2531 3.203716 AGTTGAGTCTCGTGGTTTTTCC 58.796 45.455 0.00 0.00 0.00 3.13
2429 2532 3.247886 GGAGTTGAGTCTCGTGGTTTTTC 59.752 47.826 0.00 0.00 35.52 2.29
2430 2533 3.203716 GGAGTTGAGTCTCGTGGTTTTT 58.796 45.455 0.00 0.00 35.52 1.94
2431 2534 2.484947 GGGAGTTGAGTCTCGTGGTTTT 60.485 50.000 0.00 0.00 35.52 2.43
2432 2535 1.070289 GGGAGTTGAGTCTCGTGGTTT 59.930 52.381 0.00 0.00 35.52 3.27
2433 2536 0.680061 GGGAGTTGAGTCTCGTGGTT 59.320 55.000 0.00 0.00 35.52 3.67
2434 2537 0.178958 AGGGAGTTGAGTCTCGTGGT 60.179 55.000 0.00 0.00 35.52 4.16
2435 2538 1.835494 TAGGGAGTTGAGTCTCGTGG 58.165 55.000 0.00 0.00 35.52 4.94
2436 2539 2.094649 GGTTAGGGAGTTGAGTCTCGTG 60.095 54.545 0.00 0.00 35.52 4.35
2437 2540 2.169330 GGTTAGGGAGTTGAGTCTCGT 58.831 52.381 0.00 0.00 35.52 4.18
2438 2541 1.477295 GGGTTAGGGAGTTGAGTCTCG 59.523 57.143 0.00 0.00 35.52 4.04
2439 2542 2.822697 AGGGTTAGGGAGTTGAGTCTC 58.177 52.381 0.00 0.00 0.00 3.36
2440 2543 4.415224 TTAGGGTTAGGGAGTTGAGTCT 57.585 45.455 0.00 0.00 0.00 3.24
2441 2544 4.531339 AGTTTAGGGTTAGGGAGTTGAGTC 59.469 45.833 0.00 0.00 0.00 3.36
2442 2545 4.500452 AGTTTAGGGTTAGGGAGTTGAGT 58.500 43.478 0.00 0.00 0.00 3.41
2443 2546 5.500546 AAGTTTAGGGTTAGGGAGTTGAG 57.499 43.478 0.00 0.00 0.00 3.02
2444 2547 6.731919 TGATAAGTTTAGGGTTAGGGAGTTGA 59.268 38.462 0.00 0.00 0.00 3.18
2445 2548 6.954232 TGATAAGTTTAGGGTTAGGGAGTTG 58.046 40.000 0.00 0.00 0.00 3.16
2446 2549 7.766736 ATGATAAGTTTAGGGTTAGGGAGTT 57.233 36.000 0.00 0.00 0.00 3.01
2447 2550 7.766736 AATGATAAGTTTAGGGTTAGGGAGT 57.233 36.000 0.00 0.00 0.00 3.85
2448 2551 7.720074 GGAAATGATAAGTTTAGGGTTAGGGAG 59.280 40.741 0.00 0.00 0.00 4.30
2449 2552 7.407918 AGGAAATGATAAGTTTAGGGTTAGGGA 59.592 37.037 0.00 0.00 0.00 4.20
2450 2553 7.583625 AGGAAATGATAAGTTTAGGGTTAGGG 58.416 38.462 0.00 0.00 0.00 3.53
2451 2554 8.495260 AGAGGAAATGATAAGTTTAGGGTTAGG 58.505 37.037 0.00 0.00 0.00 2.69
2455 2558 9.853177 CATTAGAGGAAATGATAAGTTTAGGGT 57.147 33.333 0.00 0.00 38.84 4.34
2456 2559 8.787852 GCATTAGAGGAAATGATAAGTTTAGGG 58.212 37.037 0.91 0.00 38.84 3.53
2457 2560 8.499162 CGCATTAGAGGAAATGATAAGTTTAGG 58.501 37.037 0.91 0.00 38.84 2.69
2458 2561 8.012241 GCGCATTAGAGGAAATGATAAGTTTAG 58.988 37.037 0.30 0.00 38.84 1.85
2459 2562 7.497579 TGCGCATTAGAGGAAATGATAAGTTTA 59.502 33.333 5.66 0.00 38.84 2.01
2460 2563 6.318648 TGCGCATTAGAGGAAATGATAAGTTT 59.681 34.615 5.66 0.00 38.84 2.66
2461 2564 5.822519 TGCGCATTAGAGGAAATGATAAGTT 59.177 36.000 5.66 0.00 38.84 2.66
2462 2565 5.368145 TGCGCATTAGAGGAAATGATAAGT 58.632 37.500 5.66 0.00 38.84 2.24
2463 2566 5.929697 TGCGCATTAGAGGAAATGATAAG 57.070 39.130 5.66 0.00 38.84 1.73
2464 2567 6.294120 CCATTGCGCATTAGAGGAAATGATAA 60.294 38.462 12.75 0.00 38.84 1.75
2465 2568 5.181811 CCATTGCGCATTAGAGGAAATGATA 59.818 40.000 12.75 0.00 38.84 2.15
2466 2569 4.022589 CCATTGCGCATTAGAGGAAATGAT 60.023 41.667 12.75 0.00 38.84 2.45
2467 2570 3.316029 CCATTGCGCATTAGAGGAAATGA 59.684 43.478 12.75 0.00 38.84 2.57
2468 2571 3.551454 CCCATTGCGCATTAGAGGAAATG 60.551 47.826 12.75 8.54 39.41 2.32
2469 2572 2.624838 CCCATTGCGCATTAGAGGAAAT 59.375 45.455 12.75 0.00 0.00 2.17
2470 2573 2.023673 CCCATTGCGCATTAGAGGAAA 58.976 47.619 12.75 0.00 0.00 3.13
2471 2574 1.679139 CCCATTGCGCATTAGAGGAA 58.321 50.000 12.75 0.00 0.00 3.36
2472 2575 0.819259 GCCCATTGCGCATTAGAGGA 60.819 55.000 12.75 0.00 0.00 3.71
2473 2576 1.102809 TGCCCATTGCGCATTAGAGG 61.103 55.000 12.75 9.57 45.60 3.69
2474 2577 2.407268 TGCCCATTGCGCATTAGAG 58.593 52.632 12.75 0.04 45.60 2.43
2475 2578 4.653893 TGCCCATTGCGCATTAGA 57.346 50.000 12.75 0.00 45.60 2.10
2482 2585 4.340019 TGCGTTGTGCCCATTGCG 62.340 61.111 0.00 0.00 45.60 4.85
2483 2586 2.431260 CTGCGTTGTGCCCATTGC 60.431 61.111 0.00 0.00 45.60 3.56
2484 2587 1.081242 GTCTGCGTTGTGCCCATTG 60.081 57.895 0.00 0.00 45.60 2.82
2485 2588 2.616330 CGTCTGCGTTGTGCCCATT 61.616 57.895 0.00 0.00 45.60 3.16
2486 2589 3.049674 CGTCTGCGTTGTGCCCAT 61.050 61.111 0.00 0.00 45.60 4.00
2487 2590 4.228567 TCGTCTGCGTTGTGCCCA 62.229 61.111 0.00 0.00 45.60 5.36
2488 2591 3.414700 CTCGTCTGCGTTGTGCCC 61.415 66.667 0.00 0.00 45.60 5.36
2489 2592 4.077188 GCTCGTCTGCGTTGTGCC 62.077 66.667 0.00 0.00 45.60 5.01
2490 2593 1.733041 TAGCTCGTCTGCGTTGTGC 60.733 57.895 0.00 0.00 46.70 4.57
2491 2594 0.387367 AGTAGCTCGTCTGCGTTGTG 60.387 55.000 0.00 0.00 39.49 3.33
2492 2595 0.109689 GAGTAGCTCGTCTGCGTTGT 60.110 55.000 0.00 0.00 39.49 3.32
2493 2596 0.798771 GGAGTAGCTCGTCTGCGTTG 60.799 60.000 0.00 0.00 39.49 4.10
2494 2597 1.507174 GGAGTAGCTCGTCTGCGTT 59.493 57.895 0.00 0.00 39.49 4.84
2495 2598 2.408241 GGGAGTAGCTCGTCTGCGT 61.408 63.158 0.00 0.00 39.49 5.24
2496 2599 1.658686 AAGGGAGTAGCTCGTCTGCG 61.659 60.000 0.00 0.00 38.13 5.18
2497 2600 1.335496 CTAAGGGAGTAGCTCGTCTGC 59.665 57.143 0.00 0.00 0.00 4.26
2498 2601 1.335496 GCTAAGGGAGTAGCTCGTCTG 59.665 57.143 0.00 0.00 42.73 3.51
2499 2602 1.682740 GCTAAGGGAGTAGCTCGTCT 58.317 55.000 0.00 0.00 42.73 4.18
2500 2603 0.669619 GGCTAAGGGAGTAGCTCGTC 59.330 60.000 0.00 0.00 44.94 4.20
2501 2604 0.033405 TGGCTAAGGGAGTAGCTCGT 60.033 55.000 0.00 0.00 44.94 4.18
2502 2605 1.333177 ATGGCTAAGGGAGTAGCTCG 58.667 55.000 0.00 0.00 44.94 5.03
2503 2606 3.231818 TGTATGGCTAAGGGAGTAGCTC 58.768 50.000 0.00 0.00 44.94 4.09
2504 2607 3.330126 TGTATGGCTAAGGGAGTAGCT 57.670 47.619 4.37 0.00 44.94 3.32
2505 2608 4.319177 CATTGTATGGCTAAGGGAGTAGC 58.681 47.826 0.00 0.00 44.87 3.58
2506 2609 4.899502 CCATTGTATGGCTAAGGGAGTAG 58.100 47.826 0.00 0.00 44.70 2.57
2507 2610 4.974645 CCATTGTATGGCTAAGGGAGTA 57.025 45.455 0.00 0.00 44.70 2.59
2508 2611 3.864789 CCATTGTATGGCTAAGGGAGT 57.135 47.619 0.00 0.00 44.70 3.85
2520 2623 4.398988 ACACGCATTCAATGACCATTGTAT 59.601 37.500 18.76 13.59 46.15 2.29
2521 2624 3.755905 ACACGCATTCAATGACCATTGTA 59.244 39.130 18.76 12.12 46.15 2.41
2522 2625 2.557924 ACACGCATTCAATGACCATTGT 59.442 40.909 18.76 2.21 46.15 2.71
2524 2627 2.819019 TCACACGCATTCAATGACCATT 59.181 40.909 0.00 0.00 0.00 3.16
2525 2628 2.435422 TCACACGCATTCAATGACCAT 58.565 42.857 0.00 0.00 0.00 3.55
2526 2629 1.889545 TCACACGCATTCAATGACCA 58.110 45.000 0.00 0.00 0.00 4.02
2527 2630 2.789208 CATCACACGCATTCAATGACC 58.211 47.619 0.00 0.00 0.00 4.02
2528 2631 2.179589 GCATCACACGCATTCAATGAC 58.820 47.619 0.00 0.00 0.00 3.06
2529 2632 1.811359 TGCATCACACGCATTCAATGA 59.189 42.857 0.00 0.00 33.55 2.57
2530 2633 2.265647 TGCATCACACGCATTCAATG 57.734 45.000 0.00 0.00 33.55 2.82
2531 2634 3.300852 TTTGCATCACACGCATTCAAT 57.699 38.095 0.00 0.00 39.58 2.57
2532 2635 2.789491 TTTGCATCACACGCATTCAA 57.211 40.000 0.00 0.00 39.58 2.69
2533 2636 3.244156 GAATTTGCATCACACGCATTCA 58.756 40.909 0.00 0.00 39.58 2.57
2534 2637 3.244156 TGAATTTGCATCACACGCATTC 58.756 40.909 0.00 0.00 39.58 2.67
2535 2638 3.247442 CTGAATTTGCATCACACGCATT 58.753 40.909 0.00 0.00 39.58 3.56
2536 2639 2.416296 CCTGAATTTGCATCACACGCAT 60.416 45.455 0.00 0.00 39.58 4.73
2537 2640 1.068402 CCTGAATTTGCATCACACGCA 60.068 47.619 0.00 0.00 37.68 5.24
2538 2641 1.621107 CCTGAATTTGCATCACACGC 58.379 50.000 0.00 0.00 0.00 5.34
2539 2642 1.135315 CCCCTGAATTTGCATCACACG 60.135 52.381 0.00 0.00 0.00 4.49
2540 2643 1.404583 GCCCCTGAATTTGCATCACAC 60.405 52.381 0.00 0.00 0.00 3.82
2541 2644 0.896923 GCCCCTGAATTTGCATCACA 59.103 50.000 0.00 0.00 0.00 3.58
2542 2645 0.176449 GGCCCCTGAATTTGCATCAC 59.824 55.000 0.00 0.00 0.00 3.06
2543 2646 0.041535 AGGCCCCTGAATTTGCATCA 59.958 50.000 0.00 0.00 0.00 3.07
2544 2647 2.071778 TAGGCCCCTGAATTTGCATC 57.928 50.000 0.00 0.00 0.00 3.91
2545 2648 2.548464 TTAGGCCCCTGAATTTGCAT 57.452 45.000 0.00 0.00 0.00 3.96
2546 2649 2.387757 GATTAGGCCCCTGAATTTGCA 58.612 47.619 0.00 0.00 0.00 4.08
2547 2650 1.688735 GGATTAGGCCCCTGAATTTGC 59.311 52.381 0.00 0.00 0.00 3.68
2548 2651 2.695147 GTGGATTAGGCCCCTGAATTTG 59.305 50.000 0.00 0.00 0.00 2.32
2549 2652 2.587307 AGTGGATTAGGCCCCTGAATTT 59.413 45.455 0.00 0.00 0.00 1.82
2550 2653 2.217776 AGTGGATTAGGCCCCTGAATT 58.782 47.619 0.00 0.00 0.00 2.17
2551 2654 1.912862 AGTGGATTAGGCCCCTGAAT 58.087 50.000 0.00 0.00 0.00 2.57
2552 2655 1.681229 AAGTGGATTAGGCCCCTGAA 58.319 50.000 0.00 0.00 0.00 3.02
2553 2656 1.564348 GAAAGTGGATTAGGCCCCTGA 59.436 52.381 0.00 0.00 0.00 3.86
2554 2657 1.747206 CGAAAGTGGATTAGGCCCCTG 60.747 57.143 0.00 0.00 0.00 4.45
2555 2658 0.546598 CGAAAGTGGATTAGGCCCCT 59.453 55.000 0.00 0.00 0.00 4.79
2556 2659 0.255033 ACGAAAGTGGATTAGGCCCC 59.745 55.000 0.00 0.00 46.97 5.80
2557 2660 3.875865 ACGAAAGTGGATTAGGCCC 57.124 52.632 0.00 0.00 46.97 5.80
2610 2713 8.811994 CCCTTCCCAAGTTAATTTCTCAAATTA 58.188 33.333 0.00 0.00 41.16 1.40
2611 2714 7.679783 CCCTTCCCAAGTTAATTTCTCAAATT 58.320 34.615 0.23 0.23 43.19 1.82
2612 2715 6.295859 GCCCTTCCCAAGTTAATTTCTCAAAT 60.296 38.462 0.00 0.00 0.00 2.32
2613 2716 5.011635 GCCCTTCCCAAGTTAATTTCTCAAA 59.988 40.000 0.00 0.00 0.00 2.69
2614 2717 4.526650 GCCCTTCCCAAGTTAATTTCTCAA 59.473 41.667 0.00 0.00 0.00 3.02
2615 2718 4.086457 GCCCTTCCCAAGTTAATTTCTCA 58.914 43.478 0.00 0.00 0.00 3.27
2616 2719 4.086457 TGCCCTTCCCAAGTTAATTTCTC 58.914 43.478 0.00 0.00 0.00 2.87
2617 2720 4.126520 TGCCCTTCCCAAGTTAATTTCT 57.873 40.909 0.00 0.00 0.00 2.52
2618 2721 4.466015 TCATGCCCTTCCCAAGTTAATTTC 59.534 41.667 0.00 0.00 0.00 2.17
2619 2722 4.424842 TCATGCCCTTCCCAAGTTAATTT 58.575 39.130 0.00 0.00 0.00 1.82
2620 2723 4.059773 TCATGCCCTTCCCAAGTTAATT 57.940 40.909 0.00 0.00 0.00 1.40
2621 2724 3.756082 TCATGCCCTTCCCAAGTTAAT 57.244 42.857 0.00 0.00 0.00 1.40
2622 2725 3.756082 ATCATGCCCTTCCCAAGTTAA 57.244 42.857 0.00 0.00 0.00 2.01
2623 2726 3.756082 AATCATGCCCTTCCCAAGTTA 57.244 42.857 0.00 0.00 0.00 2.24
2624 2727 2.629017 AATCATGCCCTTCCCAAGTT 57.371 45.000 0.00 0.00 0.00 2.66
2625 2728 2.568509 CAAAATCATGCCCTTCCCAAGT 59.431 45.455 0.00 0.00 0.00 3.16
2626 2729 2.678769 GCAAAATCATGCCCTTCCCAAG 60.679 50.000 0.00 0.00 40.49 3.61
2627 2730 1.278699 GCAAAATCATGCCCTTCCCAA 59.721 47.619 0.00 0.00 40.49 4.12
2628 2731 0.903942 GCAAAATCATGCCCTTCCCA 59.096 50.000 0.00 0.00 40.49 4.37
2629 2732 0.179103 CGCAAAATCATGCCCTTCCC 60.179 55.000 0.00 0.00 43.47 3.97
2630 2733 0.532115 ACGCAAAATCATGCCCTTCC 59.468 50.000 0.00 0.00 43.47 3.46
2631 2734 1.632422 CACGCAAAATCATGCCCTTC 58.368 50.000 0.00 0.00 43.47 3.46
2632 2735 0.390209 GCACGCAAAATCATGCCCTT 60.390 50.000 0.00 0.00 43.47 3.95
2633 2736 1.216178 GCACGCAAAATCATGCCCT 59.784 52.632 0.00 0.00 43.47 5.19
2634 2737 0.460635 ATGCACGCAAAATCATGCCC 60.461 50.000 0.00 0.00 43.47 5.36
2635 2738 2.206815 TATGCACGCAAAATCATGCC 57.793 45.000 0.00 0.00 43.47 4.40
2636 2739 4.146961 GTGTATATGCACGCAAAATCATGC 59.853 41.667 8.24 0.00 42.94 4.06
2637 2740 5.272397 TGTGTATATGCACGCAAAATCATG 58.728 37.500 17.57 0.00 41.94 3.07
2638 2741 5.066375 ACTGTGTATATGCACGCAAAATCAT 59.934 36.000 17.57 0.00 41.94 2.45
2639 2742 4.394610 ACTGTGTATATGCACGCAAAATCA 59.605 37.500 17.57 0.00 41.94 2.57
2640 2743 4.908736 ACTGTGTATATGCACGCAAAATC 58.091 39.130 17.57 0.00 41.94 2.17
2641 2744 4.963276 ACTGTGTATATGCACGCAAAAT 57.037 36.364 17.57 0.00 41.94 1.82
2642 2745 4.757799 AACTGTGTATATGCACGCAAAA 57.242 36.364 17.57 0.76 41.94 2.44
2643 2746 5.352846 ACATAACTGTGTATATGCACGCAAA 59.647 36.000 17.57 5.60 41.94 3.68
2644 2747 4.873259 ACATAACTGTGTATATGCACGCAA 59.127 37.500 17.57 5.28 41.94 4.85
2645 2748 4.438148 ACATAACTGTGTATATGCACGCA 58.562 39.130 17.57 5.69 41.94 5.24
2646 2749 6.352526 GTTACATAACTGTGTATATGCACGC 58.647 40.000 17.57 1.14 41.94 5.34
2647 2750 6.477360 TGGTTACATAACTGTGTATATGCACG 59.523 38.462 17.57 14.40 36.29 5.34
2648 2751 7.780008 TGGTTACATAACTGTGTATATGCAC 57.220 36.000 16.19 16.19 36.79 4.57
2649 2752 8.428852 AGATGGTTACATAACTGTGTATATGCA 58.571 33.333 0.00 0.00 37.47 3.96
2650 2753 8.833231 AGATGGTTACATAACTGTGTATATGC 57.167 34.615 2.00 0.00 37.47 3.14
2655 2758 9.910267 TCTACTAGATGGTTACATAACTGTGTA 57.090 33.333 0.00 0.00 37.47 2.90
2656 2759 8.818622 TCTACTAGATGGTTACATAACTGTGT 57.181 34.615 0.00 0.00 37.47 3.72
2657 2760 9.684448 CATCTACTAGATGGTTACATAACTGTG 57.316 37.037 15.84 0.00 46.34 3.66
2672 2775 8.052141 TGCTACTCATAGATGCATCTACTAGAT 58.948 37.037 33.41 24.68 41.77 1.98
2673 2776 7.398024 TGCTACTCATAGATGCATCTACTAGA 58.602 38.462 33.41 28.44 41.77 2.43
2674 2777 7.622893 TGCTACTCATAGATGCATCTACTAG 57.377 40.000 33.31 30.76 41.77 2.57
2675 2778 9.686683 TTATGCTACTCATAGATGCATCTACTA 57.313 33.333 33.31 23.52 41.77 1.82
2676 2779 8.586879 TTATGCTACTCATAGATGCATCTACT 57.413 34.615 33.31 21.02 41.77 2.57
2677 2780 9.645059 TTTTATGCTACTCATAGATGCATCTAC 57.355 33.333 33.31 20.78 41.77 2.59
2681 2784 9.388506 GGTATTTTATGCTACTCATAGATGCAT 57.611 33.333 0.00 0.00 44.93 3.96
2682 2785 8.597167 AGGTATTTTATGCTACTCATAGATGCA 58.403 33.333 0.00 0.00 38.75 3.96


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.