Multiple sequence alignment - TraesCS6B01G053300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G053300 chr6B 100.000 2513 0 0 1 2513 33010592 33013104 0.000000e+00 4641.0
1 TraesCS6B01G053300 chr6B 91.105 787 45 15 754 1530 32998461 32997690 0.000000e+00 1042.0
2 TraesCS6B01G053300 chr6B 85.957 883 76 22 747 1595 33042597 33041729 0.000000e+00 900.0
3 TraesCS6B01G053300 chr6B 87.879 66 4 3 2376 2437 678346691 678346626 9.640000e-10 75.0
4 TraesCS6B01G053300 chr6D 91.319 1221 83 9 385 1589 18940125 18941338 0.000000e+00 1646.0
5 TraesCS6B01G053300 chr6D 91.730 786 44 12 754 1530 18937569 18936796 0.000000e+00 1072.0
6 TraesCS6B01G053300 chr6D 83.231 817 73 27 1584 2377 18957813 18958588 0.000000e+00 691.0
7 TraesCS6B01G053300 chr6D 88.803 259 22 3 1861 2113 450573976 450573719 6.750000e-81 311.0
8 TraesCS6B01G053300 chr6D 85.609 271 28 5 2110 2369 450573687 450573417 8.860000e-70 274.0
9 TraesCS6B01G053300 chr6D 90.303 165 13 2 2201 2363 18960533 18960696 1.960000e-51 213.0
10 TraesCS6B01G053300 chr6D 98.182 55 1 0 2030 2084 18959137 18959191 2.060000e-16 97.1
11 TraesCS6B01G053300 chr6D 90.909 66 3 2 2377 2439 144029128 144029063 4.450000e-13 86.1
12 TraesCS6B01G053300 chr6A 90.723 1121 72 12 923 2018 19167404 19168517 0.000000e+00 1465.0
13 TraesCS6B01G053300 chr6A 88.719 851 54 22 754 1593 19162341 19161522 0.000000e+00 1002.0
14 TraesCS6B01G053300 chr6A 84.455 862 80 31 755 1588 19175091 19174256 0.000000e+00 800.0
15 TraesCS6B01G053300 chr6A 82.000 650 83 20 256 892 19166372 19167000 2.860000e-144 521.0
16 TraesCS6B01G053300 chr7B 86.180 521 55 12 1001 1513 596606416 596606927 4.730000e-152 547.0
17 TraesCS6B01G053300 chr7B 94.706 340 18 0 1173 1512 67808249 67808588 1.710000e-146 529.0
18 TraesCS6B01G053300 chr7B 90.000 80 8 0 385 464 742924821 742924900 1.230000e-18 104.0
19 TraesCS6B01G053300 chr7D 95.000 340 17 0 1173 1512 108085665 108086004 3.680000e-148 534.0
20 TraesCS6B01G053300 chr7D 82.470 251 38 2 1858 2102 574012276 574012526 5.440000e-52 215.0
21 TraesCS6B01G053300 chr4A 85.150 532 55 16 1001 1513 692079299 692079825 7.960000e-145 523.0
22 TraesCS6B01G053300 chr4A 90.000 80 8 0 385 464 633750356 633750435 1.230000e-18 104.0
23 TraesCS6B01G053300 chr4A 96.078 51 1 1 2376 2425 3273856 3273806 5.760000e-12 82.4
24 TraesCS6B01G053300 chr4A 91.228 57 3 2 2371 2425 716970855 716970911 2.680000e-10 76.8
25 TraesCS6B01G053300 chr2A 88.672 256 23 2 1861 2110 779310312 779310567 8.730000e-80 307.0
26 TraesCS6B01G053300 chr2A 81.560 282 40 6 2108 2377 779310600 779310881 3.250000e-54 222.0
27 TraesCS6B01G053300 chr7A 88.031 259 24 3 1861 2113 734642444 734642187 1.460000e-77 300.0
28 TraesCS6B01G053300 chr7A 82.624 282 37 6 2108 2377 734642157 734641876 3.230000e-59 239.0
29 TraesCS6B01G053300 chr3D 84.314 255 34 2 1861 2109 94533983 94533729 6.940000e-61 244.0
30 TraesCS6B01G053300 chr1A 82.979 282 36 6 2108 2377 96431908 96432189 6.940000e-61 244.0
31 TraesCS6B01G053300 chr2B 88.136 118 6 4 2376 2485 765310205 765310322 1.570000e-27 134.0
32 TraesCS6B01G053300 chr2B 85.321 109 8 4 2378 2479 152700748 152700855 3.420000e-19 106.0
33 TraesCS6B01G053300 chr2D 81.301 123 15 3 2378 2492 73143474 73143596 2.660000e-15 93.5
34 TraesCS6B01G053300 chr5A 91.803 61 2 3 2376 2435 611830412 611830470 5.760000e-12 82.4
35 TraesCS6B01G053300 chr3B 90.000 60 3 3 2377 2435 783451570 783451627 9.640000e-10 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G053300 chr6B 33010592 33013104 2512 False 4641.0 4641 100.0000 1 2513 1 chr6B.!!$F1 2512
1 TraesCS6B01G053300 chr6B 32997690 32998461 771 True 1042.0 1042 91.1050 754 1530 1 chr6B.!!$R1 776
2 TraesCS6B01G053300 chr6B 33041729 33042597 868 True 900.0 900 85.9570 747 1595 1 chr6B.!!$R2 848
3 TraesCS6B01G053300 chr6D 18940125 18941338 1213 False 1646.0 1646 91.3190 385 1589 1 chr6D.!!$F1 1204
4 TraesCS6B01G053300 chr6D 18936796 18937569 773 True 1072.0 1072 91.7300 754 1530 1 chr6D.!!$R1 776
5 TraesCS6B01G053300 chr6D 18957813 18960696 2883 False 333.7 691 90.5720 1584 2377 3 chr6D.!!$F2 793
6 TraesCS6B01G053300 chr6D 450573417 450573976 559 True 292.5 311 87.2060 1861 2369 2 chr6D.!!$R3 508
7 TraesCS6B01G053300 chr6A 19161522 19162341 819 True 1002.0 1002 88.7190 754 1593 1 chr6A.!!$R1 839
8 TraesCS6B01G053300 chr6A 19166372 19168517 2145 False 993.0 1465 86.3615 256 2018 2 chr6A.!!$F1 1762
9 TraesCS6B01G053300 chr6A 19174256 19175091 835 True 800.0 800 84.4550 755 1588 1 chr6A.!!$R2 833
10 TraesCS6B01G053300 chr7B 596606416 596606927 511 False 547.0 547 86.1800 1001 1513 1 chr7B.!!$F2 512
11 TraesCS6B01G053300 chr4A 692079299 692079825 526 False 523.0 523 85.1500 1001 1513 1 chr4A.!!$F2 512
12 TraesCS6B01G053300 chr2A 779310312 779310881 569 False 264.5 307 85.1160 1861 2377 2 chr2A.!!$F1 516
13 TraesCS6B01G053300 chr7A 734641876 734642444 568 True 269.5 300 85.3275 1861 2377 2 chr7A.!!$R1 516

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
47 48 0.037512 CATCCTCTGGCTATCGCTGG 60.038 60.0 0.0 0.0 36.09 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1853 2352 1.338973 AGTCGAACACAAGGCGTAAGA 59.661 47.619 0.0 0.0 43.02 2.1 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 8.822805 ACCTTTGTAGATGTAGTTTAGATTGGA 58.177 33.333 0.00 0.00 0.00 3.53
28 29 9.099454 CCTTTGTAGATGTAGTTTAGATTGGAC 57.901 37.037 0.00 0.00 0.00 4.02
29 30 9.653287 CTTTGTAGATGTAGTTTAGATTGGACA 57.347 33.333 0.00 0.00 0.00 4.02
31 32 9.817809 TTGTAGATGTAGTTTAGATTGGACATC 57.182 33.333 4.96 4.96 42.16 3.06
32 33 8.421784 TGTAGATGTAGTTTAGATTGGACATCC 58.578 37.037 8.73 0.00 42.60 3.51
33 34 7.682787 AGATGTAGTTTAGATTGGACATCCT 57.317 36.000 8.73 0.00 42.60 3.24
34 35 7.731054 AGATGTAGTTTAGATTGGACATCCTC 58.269 38.462 8.73 0.00 42.60 3.71
35 36 7.566879 AGATGTAGTTTAGATTGGACATCCTCT 59.433 37.037 8.73 0.00 42.60 3.69
36 37 6.878317 TGTAGTTTAGATTGGACATCCTCTG 58.122 40.000 0.00 0.00 36.82 3.35
37 38 5.365021 AGTTTAGATTGGACATCCTCTGG 57.635 43.478 0.00 0.00 36.82 3.86
38 39 3.845781 TTAGATTGGACATCCTCTGGC 57.154 47.619 0.00 0.00 36.82 4.85
39 40 1.890552 AGATTGGACATCCTCTGGCT 58.109 50.000 0.00 0.00 36.82 4.75
40 41 3.051940 AGATTGGACATCCTCTGGCTA 57.948 47.619 0.00 0.00 36.82 3.93
41 42 3.596101 AGATTGGACATCCTCTGGCTAT 58.404 45.455 0.00 0.00 36.82 2.97
42 43 3.582208 AGATTGGACATCCTCTGGCTATC 59.418 47.826 0.00 0.00 36.82 2.08
43 44 1.332195 TGGACATCCTCTGGCTATCG 58.668 55.000 0.00 0.00 36.82 2.92
44 45 0.037790 GGACATCCTCTGGCTATCGC 60.038 60.000 0.00 0.00 31.35 4.58
45 46 0.965439 GACATCCTCTGGCTATCGCT 59.035 55.000 0.00 0.00 36.09 4.93
46 47 0.678395 ACATCCTCTGGCTATCGCTG 59.322 55.000 0.00 0.00 36.09 5.18
47 48 0.037512 CATCCTCTGGCTATCGCTGG 60.038 60.000 0.00 0.00 36.09 4.85
48 49 1.825281 ATCCTCTGGCTATCGCTGGC 61.825 60.000 0.00 0.00 36.09 4.85
49 50 2.506061 CCTCTGGCTATCGCTGGCT 61.506 63.158 0.00 0.00 36.09 4.75
50 51 1.181741 CCTCTGGCTATCGCTGGCTA 61.182 60.000 0.00 0.00 36.09 3.93
51 52 0.676184 CTCTGGCTATCGCTGGCTAA 59.324 55.000 0.00 0.00 36.09 3.09
52 53 0.389391 TCTGGCTATCGCTGGCTAAC 59.611 55.000 0.00 0.00 36.09 2.34
53 54 0.104855 CTGGCTATCGCTGGCTAACA 59.895 55.000 0.00 0.00 36.09 2.41
54 55 0.758734 TGGCTATCGCTGGCTAACAT 59.241 50.000 0.00 0.00 36.09 2.71
55 56 1.140852 TGGCTATCGCTGGCTAACATT 59.859 47.619 0.00 0.00 36.09 2.71
56 57 1.532868 GGCTATCGCTGGCTAACATTG 59.467 52.381 0.00 0.00 36.09 2.82
57 58 2.213499 GCTATCGCTGGCTAACATTGT 58.787 47.619 0.00 0.00 0.00 2.71
58 59 3.390135 GCTATCGCTGGCTAACATTGTA 58.610 45.455 0.00 0.00 0.00 2.41
59 60 3.184581 GCTATCGCTGGCTAACATTGTAC 59.815 47.826 0.00 0.00 0.00 2.90
60 61 2.018542 TCGCTGGCTAACATTGTACC 57.981 50.000 0.00 0.00 0.00 3.34
61 62 1.276705 TCGCTGGCTAACATTGTACCA 59.723 47.619 6.11 6.11 0.00 3.25
62 63 2.093181 TCGCTGGCTAACATTGTACCAT 60.093 45.455 6.59 0.00 0.00 3.55
63 64 3.133183 TCGCTGGCTAACATTGTACCATA 59.867 43.478 6.59 0.00 0.00 2.74
64 65 3.874543 CGCTGGCTAACATTGTACCATAA 59.125 43.478 6.59 0.00 0.00 1.90
65 66 4.260620 CGCTGGCTAACATTGTACCATAAC 60.261 45.833 6.59 1.22 0.00 1.89
66 67 4.260620 GCTGGCTAACATTGTACCATAACG 60.261 45.833 6.59 0.00 0.00 3.18
67 68 4.193090 TGGCTAACATTGTACCATAACGG 58.807 43.478 2.83 0.00 42.50 4.44
68 69 4.081031 TGGCTAACATTGTACCATAACGGA 60.081 41.667 2.83 0.00 38.63 4.69
69 70 5.061179 GGCTAACATTGTACCATAACGGAT 58.939 41.667 0.00 0.00 38.63 4.18
70 71 5.178809 GGCTAACATTGTACCATAACGGATC 59.821 44.000 0.00 0.00 38.63 3.36
71 72 5.756347 GCTAACATTGTACCATAACGGATCA 59.244 40.000 0.00 0.00 38.63 2.92
72 73 6.292703 GCTAACATTGTACCATAACGGATCAC 60.293 42.308 0.00 0.00 38.63 3.06
73 74 5.092554 ACATTGTACCATAACGGATCACA 57.907 39.130 0.00 0.00 38.63 3.58
74 75 5.680619 ACATTGTACCATAACGGATCACAT 58.319 37.500 0.00 0.00 38.63 3.21
75 76 5.527214 ACATTGTACCATAACGGATCACATG 59.473 40.000 0.00 0.00 38.63 3.21
76 77 5.346181 TTGTACCATAACGGATCACATGA 57.654 39.130 0.00 0.00 38.63 3.07
77 78 5.545063 TGTACCATAACGGATCACATGAT 57.455 39.130 0.00 0.00 38.63 2.45
78 79 5.924356 TGTACCATAACGGATCACATGATT 58.076 37.500 0.00 0.00 38.63 2.57
79 80 5.989168 TGTACCATAACGGATCACATGATTC 59.011 40.000 0.00 0.00 38.63 2.52
80 81 4.389374 ACCATAACGGATCACATGATTCC 58.611 43.478 0.00 1.34 38.63 3.01
81 82 3.753272 CCATAACGGATCACATGATTCCC 59.247 47.826 0.00 0.00 36.56 3.97
82 83 4.388485 CATAACGGATCACATGATTCCCA 58.612 43.478 0.00 0.00 34.37 4.37
83 84 3.582998 AACGGATCACATGATTCCCAT 57.417 42.857 0.00 0.00 34.37 4.00
84 85 3.582998 ACGGATCACATGATTCCCATT 57.417 42.857 0.00 0.00 34.37 3.16
85 86 3.216800 ACGGATCACATGATTCCCATTG 58.783 45.455 0.00 0.00 34.37 2.82
86 87 2.030540 CGGATCACATGATTCCCATTGC 60.031 50.000 0.00 0.00 34.37 3.56
87 88 2.030540 GGATCACATGATTCCCATTGCG 60.031 50.000 0.00 0.00 34.37 4.85
88 89 2.416680 TCACATGATTCCCATTGCGA 57.583 45.000 0.00 0.00 31.94 5.10
89 90 2.934887 TCACATGATTCCCATTGCGAT 58.065 42.857 0.00 0.00 31.94 4.58
90 91 2.619646 TCACATGATTCCCATTGCGATG 59.380 45.455 6.99 6.99 31.94 3.84
91 92 2.619646 CACATGATTCCCATTGCGATGA 59.380 45.455 15.98 0.00 35.16 2.92
92 93 3.067040 CACATGATTCCCATTGCGATGAA 59.933 43.478 15.98 2.99 35.16 2.57
93 94 3.067180 ACATGATTCCCATTGCGATGAAC 59.933 43.478 15.98 2.82 35.16 3.18
94 95 1.670295 TGATTCCCATTGCGATGAACG 59.330 47.619 15.98 2.66 45.66 3.95
95 96 1.939934 GATTCCCATTGCGATGAACGA 59.060 47.619 15.98 5.01 45.77 3.85
96 97 1.083489 TTCCCATTGCGATGAACGAC 58.917 50.000 15.98 0.00 45.77 4.34
97 98 0.249120 TCCCATTGCGATGAACGACT 59.751 50.000 15.98 0.00 45.77 4.18
98 99 0.652592 CCCATTGCGATGAACGACTC 59.347 55.000 15.98 0.00 45.77 3.36
99 100 1.645034 CCATTGCGATGAACGACTCT 58.355 50.000 15.98 0.00 45.77 3.24
100 101 1.590238 CCATTGCGATGAACGACTCTC 59.410 52.381 15.98 0.00 45.77 3.20
101 102 2.534298 CATTGCGATGAACGACTCTCT 58.466 47.619 8.37 0.00 45.77 3.10
102 103 2.724977 TTGCGATGAACGACTCTCTT 57.275 45.000 0.00 0.00 45.77 2.85
103 104 1.982612 TGCGATGAACGACTCTCTTG 58.017 50.000 0.00 0.00 45.77 3.02
104 105 1.269723 TGCGATGAACGACTCTCTTGT 59.730 47.619 0.00 0.00 45.77 3.16
105 106 1.651138 GCGATGAACGACTCTCTTGTG 59.349 52.381 0.00 0.00 45.77 3.33
106 107 2.668556 GCGATGAACGACTCTCTTGTGA 60.669 50.000 0.00 0.00 45.77 3.58
107 108 3.565516 CGATGAACGACTCTCTTGTGAA 58.434 45.455 0.00 0.00 45.77 3.18
108 109 4.169508 CGATGAACGACTCTCTTGTGAAT 58.830 43.478 0.00 0.00 45.77 2.57
109 110 4.264145 CGATGAACGACTCTCTTGTGAATC 59.736 45.833 0.00 0.00 45.77 2.52
110 111 4.584327 TGAACGACTCTCTTGTGAATCA 57.416 40.909 0.00 0.00 0.00 2.57
111 112 4.550422 TGAACGACTCTCTTGTGAATCAG 58.450 43.478 0.00 0.00 0.00 2.90
112 113 2.953020 ACGACTCTCTTGTGAATCAGC 58.047 47.619 0.00 0.00 0.00 4.26
113 114 2.297315 ACGACTCTCTTGTGAATCAGCA 59.703 45.455 0.00 0.00 0.00 4.41
114 115 3.056250 ACGACTCTCTTGTGAATCAGCAT 60.056 43.478 0.00 0.00 0.00 3.79
115 116 3.306434 CGACTCTCTTGTGAATCAGCATG 59.694 47.826 0.00 0.00 37.54 4.06
128 129 3.490439 TCAGCATGACTCTTGGTTGAA 57.510 42.857 0.00 0.00 42.56 2.69
129 130 4.025040 TCAGCATGACTCTTGGTTGAAT 57.975 40.909 0.00 0.00 42.56 2.57
130 131 4.005650 TCAGCATGACTCTTGGTTGAATC 58.994 43.478 0.00 0.00 42.56 2.52
131 132 3.754850 CAGCATGACTCTTGGTTGAATCA 59.245 43.478 0.00 0.00 39.69 2.57
132 133 3.755378 AGCATGACTCTTGGTTGAATCAC 59.245 43.478 0.00 0.00 0.00 3.06
133 134 3.503363 GCATGACTCTTGGTTGAATCACA 59.497 43.478 0.00 0.00 0.00 3.58
134 135 4.022935 GCATGACTCTTGGTTGAATCACAA 60.023 41.667 0.00 0.00 36.02 3.33
146 147 5.766150 TTGAATCACAACTACCAGTTTGG 57.234 39.130 0.00 0.00 36.03 3.28
147 148 5.197451 TTGAATCACAACTACCAGTTTGGT 58.803 37.500 5.98 5.98 42.88 3.67
148 149 5.654650 TTGAATCACAACTACCAGTTTGGTT 59.345 36.000 6.00 0.00 39.71 3.67
149 150 6.405286 TTGAATCACAACTACCAGTTTGGTTG 60.405 38.462 6.00 7.08 46.39 3.77
150 151 9.704849 TTGAATCACAACTACCAGTTTGGTTGC 62.705 40.741 6.00 0.00 45.17 4.17
158 159 3.473923 CCAGTTTGGTTGCCTGAATTT 57.526 42.857 0.00 0.00 31.35 1.82
159 160 4.599047 CCAGTTTGGTTGCCTGAATTTA 57.401 40.909 0.00 0.00 31.35 1.40
160 161 4.306600 CCAGTTTGGTTGCCTGAATTTAC 58.693 43.478 0.00 0.00 31.35 2.01
161 162 4.202202 CCAGTTTGGTTGCCTGAATTTACA 60.202 41.667 0.00 0.00 31.35 2.41
162 163 4.984161 CAGTTTGGTTGCCTGAATTTACAG 59.016 41.667 0.00 0.00 37.61 2.74
163 164 3.658757 TTGGTTGCCTGAATTTACAGC 57.341 42.857 0.00 0.00 36.67 4.40
164 165 2.875296 TGGTTGCCTGAATTTACAGCT 58.125 42.857 0.00 0.00 36.67 4.24
165 166 3.230134 TGGTTGCCTGAATTTACAGCTT 58.770 40.909 0.00 0.00 36.67 3.74
166 167 3.640967 TGGTTGCCTGAATTTACAGCTTT 59.359 39.130 0.00 0.00 36.67 3.51
167 168 4.237724 GGTTGCCTGAATTTACAGCTTTC 58.762 43.478 0.00 0.00 36.67 2.62
168 169 4.261994 GGTTGCCTGAATTTACAGCTTTCA 60.262 41.667 0.00 0.00 36.67 2.69
169 170 5.288804 GTTGCCTGAATTTACAGCTTTCAA 58.711 37.500 0.00 0.00 36.67 2.69
170 171 4.870363 TGCCTGAATTTACAGCTTTCAAC 58.130 39.130 0.00 0.00 36.67 3.18
171 172 4.340666 TGCCTGAATTTACAGCTTTCAACA 59.659 37.500 0.00 0.00 36.67 3.33
172 173 5.010922 TGCCTGAATTTACAGCTTTCAACAT 59.989 36.000 0.00 0.00 36.67 2.71
173 174 5.928264 GCCTGAATTTACAGCTTTCAACATT 59.072 36.000 0.00 0.00 36.67 2.71
174 175 6.424812 GCCTGAATTTACAGCTTTCAACATTT 59.575 34.615 0.00 0.00 36.67 2.32
175 176 7.041848 GCCTGAATTTACAGCTTTCAACATTTT 60.042 33.333 0.00 0.00 36.67 1.82
176 177 8.829612 CCTGAATTTACAGCTTTCAACATTTTT 58.170 29.630 0.00 0.00 36.67 1.94
195 196 5.873179 TTTTTCCTAGCGAAATCGATGTT 57.127 34.783 7.06 0.00 40.18 2.71
196 197 4.857871 TTTCCTAGCGAAATCGATGTTG 57.142 40.909 7.06 0.00 43.02 3.33
197 198 2.201732 TCCTAGCGAAATCGATGTTGC 58.798 47.619 18.76 18.76 43.02 4.17
198 199 1.071239 CCTAGCGAAATCGATGTTGCG 60.071 52.381 19.96 8.36 43.02 4.85
199 200 0.927537 TAGCGAAATCGATGTTGCGG 59.072 50.000 19.96 0.00 43.02 5.69
200 201 1.019278 AGCGAAATCGATGTTGCGGT 61.019 50.000 19.96 9.82 43.02 5.68
201 202 0.648441 GCGAAATCGATGTTGCGGTA 59.352 50.000 12.10 0.00 43.02 4.02
202 203 1.061421 GCGAAATCGATGTTGCGGTAA 59.939 47.619 12.10 0.00 43.02 2.85
203 204 2.845764 GCGAAATCGATGTTGCGGTAAG 60.846 50.000 12.10 0.00 43.02 2.34
204 205 2.347452 CGAAATCGATGTTGCGGTAAGT 59.653 45.455 0.00 0.00 43.02 2.24
205 206 3.548668 CGAAATCGATGTTGCGGTAAGTA 59.451 43.478 0.00 0.00 43.02 2.24
206 207 4.031991 CGAAATCGATGTTGCGGTAAGTAA 59.968 41.667 0.00 0.00 43.02 2.24
207 208 5.444877 CGAAATCGATGTTGCGGTAAGTAAA 60.445 40.000 0.00 0.00 43.02 2.01
208 209 5.464965 AATCGATGTTGCGGTAAGTAAAG 57.535 39.130 0.00 0.00 0.00 1.85
209 210 4.177165 TCGATGTTGCGGTAAGTAAAGA 57.823 40.909 0.00 0.00 0.00 2.52
210 211 4.751060 TCGATGTTGCGGTAAGTAAAGAT 58.249 39.130 0.00 0.00 0.00 2.40
211 212 4.565166 TCGATGTTGCGGTAAGTAAAGATG 59.435 41.667 0.00 0.00 0.00 2.90
212 213 4.565166 CGATGTTGCGGTAAGTAAAGATGA 59.435 41.667 0.00 0.00 0.00 2.92
213 214 5.062934 CGATGTTGCGGTAAGTAAAGATGAA 59.937 40.000 0.00 0.00 0.00 2.57
214 215 6.401688 CGATGTTGCGGTAAGTAAAGATGAAA 60.402 38.462 0.00 0.00 0.00 2.69
215 216 6.811253 TGTTGCGGTAAGTAAAGATGAAAT 57.189 33.333 0.00 0.00 0.00 2.17
216 217 6.837992 TGTTGCGGTAAGTAAAGATGAAATC 58.162 36.000 0.00 0.00 46.04 2.17
232 233 5.272283 TGAAATCGACCTTACATCCTACC 57.728 43.478 0.00 0.00 0.00 3.18
233 234 4.960469 TGAAATCGACCTTACATCCTACCT 59.040 41.667 0.00 0.00 0.00 3.08
234 235 6.131264 TGAAATCGACCTTACATCCTACCTA 58.869 40.000 0.00 0.00 0.00 3.08
235 236 6.608405 TGAAATCGACCTTACATCCTACCTAA 59.392 38.462 0.00 0.00 0.00 2.69
236 237 6.651975 AATCGACCTTACATCCTACCTAAG 57.348 41.667 0.00 0.00 0.00 2.18
237 238 5.378230 TCGACCTTACATCCTACCTAAGA 57.622 43.478 0.00 0.00 0.00 2.10
238 239 5.128919 TCGACCTTACATCCTACCTAAGAC 58.871 45.833 0.00 0.00 0.00 3.01
239 240 4.277921 CGACCTTACATCCTACCTAAGACC 59.722 50.000 0.00 0.00 0.00 3.85
240 241 4.554683 ACCTTACATCCTACCTAAGACCC 58.445 47.826 0.00 0.00 0.00 4.46
241 242 4.015918 ACCTTACATCCTACCTAAGACCCA 60.016 45.833 0.00 0.00 0.00 4.51
242 243 4.966805 CCTTACATCCTACCTAAGACCCAA 59.033 45.833 0.00 0.00 0.00 4.12
243 244 5.163332 CCTTACATCCTACCTAAGACCCAAC 60.163 48.000 0.00 0.00 0.00 3.77
244 245 3.798515 ACATCCTACCTAAGACCCAACA 58.201 45.455 0.00 0.00 0.00 3.33
245 246 3.775316 ACATCCTACCTAAGACCCAACAG 59.225 47.826 0.00 0.00 0.00 3.16
246 247 3.555117 TCCTACCTAAGACCCAACAGT 57.445 47.619 0.00 0.00 0.00 3.55
247 248 3.170717 TCCTACCTAAGACCCAACAGTG 58.829 50.000 0.00 0.00 0.00 3.66
248 249 2.236395 CCTACCTAAGACCCAACAGTGG 59.764 54.545 0.00 0.00 45.53 4.00
249 250 1.815757 ACCTAAGACCCAACAGTGGT 58.184 50.000 0.00 0.00 44.30 4.16
250 251 1.420138 ACCTAAGACCCAACAGTGGTG 59.580 52.381 0.00 0.00 44.30 4.17
251 252 1.271379 CCTAAGACCCAACAGTGGTGG 60.271 57.143 21.16 21.16 44.30 4.61
252 253 1.420138 CTAAGACCCAACAGTGGTGGT 59.580 52.381 25.57 13.74 44.30 4.16
253 254 0.106719 AAGACCCAACAGTGGTGGTG 60.107 55.000 25.57 18.49 44.30 4.17
263 264 0.771127 AGTGGTGGTGGTTGTATGCT 59.229 50.000 0.00 0.00 0.00 3.79
271 272 1.396996 GTGGTTGTATGCTGCTTACCG 59.603 52.381 19.22 0.00 0.00 4.02
290 291 0.099436 GCCATTCGAGCCAATGACAC 59.901 55.000 0.00 0.00 36.03 3.67
293 294 1.061131 CATTCGAGCCAATGACACGTC 59.939 52.381 0.00 0.00 36.03 4.34
298 299 1.137404 GCCAATGACACGTCCATGC 59.863 57.895 1.20 0.00 0.00 4.06
300 301 1.425031 CAATGACACGTCCATGCCG 59.575 57.895 1.20 1.94 0.00 5.69
301 302 1.018752 CAATGACACGTCCATGCCGA 61.019 55.000 9.61 0.00 0.00 5.54
321 322 1.613630 GGCAGAGAGGAAGGGGACA 60.614 63.158 0.00 0.00 0.00 4.02
323 324 0.251634 GCAGAGAGGAAGGGGACAAG 59.748 60.000 0.00 0.00 0.00 3.16
337 338 4.315588 CAAGCAGCTCTTGGAGGG 57.684 61.111 14.53 0.00 46.50 4.30
338 339 1.378250 CAAGCAGCTCTTGGAGGGG 60.378 63.158 14.53 0.00 46.50 4.79
339 340 1.539869 AAGCAGCTCTTGGAGGGGA 60.540 57.895 0.00 0.00 32.79 4.81
340 341 1.560866 AAGCAGCTCTTGGAGGGGAG 61.561 60.000 0.00 0.00 32.79 4.30
341 342 1.992277 GCAGCTCTTGGAGGGGAGA 60.992 63.158 0.00 0.00 0.00 3.71
342 343 1.557269 GCAGCTCTTGGAGGGGAGAA 61.557 60.000 0.00 0.00 0.00 2.87
343 344 0.540923 CAGCTCTTGGAGGGGAGAAG 59.459 60.000 0.00 0.00 0.00 2.85
344 345 1.223211 GCTCTTGGAGGGGAGAAGC 59.777 63.158 0.00 0.00 0.00 3.86
345 346 1.557269 GCTCTTGGAGGGGAGAAGCA 61.557 60.000 0.00 0.00 0.00 3.91
346 347 0.540923 CTCTTGGAGGGGAGAAGCAG 59.459 60.000 0.00 0.00 0.00 4.24
348 349 1.151810 TTGGAGGGGAGAAGCAGGT 60.152 57.895 0.00 0.00 0.00 4.00
350 351 2.371259 GGAGGGGAGAAGCAGGTCC 61.371 68.421 0.00 0.00 0.00 4.46
351 352 1.306568 GAGGGGAGAAGCAGGTCCT 60.307 63.158 0.00 0.00 32.90 3.85
352 353 1.614824 AGGGGAGAAGCAGGTCCTG 60.615 63.158 15.15 15.15 32.90 3.86
353 354 2.674220 GGGGAGAAGCAGGTCCTGG 61.674 68.421 20.72 2.60 32.90 4.45
354 355 1.920835 GGGAGAAGCAGGTCCTGGT 60.921 63.158 18.12 18.12 44.48 4.00
355 356 1.298014 GGAGAAGCAGGTCCTGGTG 59.702 63.158 24.04 0.00 41.59 4.17
356 357 1.376553 GAGAAGCAGGTCCTGGTGC 60.377 63.158 24.04 22.02 41.59 5.01
357 358 2.360475 GAAGCAGGTCCTGGTGCC 60.360 66.667 24.04 14.87 41.59 5.01
358 359 3.177884 AAGCAGGTCCTGGTGCCA 61.178 61.111 24.04 0.00 41.59 4.92
360 361 3.640407 GCAGGTCCTGGTGCCAGA 61.640 66.667 20.72 3.40 46.30 3.86
361 362 2.667418 CAGGTCCTGGTGCCAGAG 59.333 66.667 19.04 9.56 46.30 3.35
362 363 1.915266 CAGGTCCTGGTGCCAGAGA 60.915 63.158 19.04 11.56 46.30 3.10
363 364 1.081833 AGGTCCTGGTGCCAGAGAT 59.918 57.895 19.04 0.32 46.30 2.75
365 366 0.329596 GGTCCTGGTGCCAGAGATTT 59.670 55.000 19.04 0.00 46.30 2.17
366 367 1.559682 GGTCCTGGTGCCAGAGATTTA 59.440 52.381 19.04 0.00 46.30 1.40
367 368 2.026262 GGTCCTGGTGCCAGAGATTTAA 60.026 50.000 19.04 0.00 46.30 1.52
368 369 3.274288 GTCCTGGTGCCAGAGATTTAAG 58.726 50.000 19.04 0.71 46.30 1.85
369 370 2.019984 CCTGGTGCCAGAGATTTAAGC 58.980 52.381 19.04 0.00 46.30 3.09
370 371 2.019984 CTGGTGCCAGAGATTTAAGCC 58.980 52.381 12.66 0.00 46.30 4.35
371 372 1.354031 TGGTGCCAGAGATTTAAGCCA 59.646 47.619 0.00 0.00 0.00 4.75
373 374 2.164422 GGTGCCAGAGATTTAAGCCAAC 59.836 50.000 0.00 0.00 0.00 3.77
374 375 2.083774 TGCCAGAGATTTAAGCCAACG 58.916 47.619 0.00 0.00 0.00 4.10
375 376 2.084546 GCCAGAGATTTAAGCCAACGT 58.915 47.619 0.00 0.00 0.00 3.99
376 377 2.096013 GCCAGAGATTTAAGCCAACGTC 59.904 50.000 0.00 0.00 0.00 4.34
377 378 2.348666 CCAGAGATTTAAGCCAACGTCG 59.651 50.000 0.00 0.00 0.00 5.12
378 379 2.000447 AGAGATTTAAGCCAACGTCGC 59.000 47.619 0.00 0.00 0.00 5.19
381 382 0.606944 ATTTAAGCCAACGTCGCCCA 60.607 50.000 4.10 0.00 0.00 5.36
402 403 5.163519 CCCACTGGCAATAATCACTAAAAGG 60.164 44.000 0.00 0.00 0.00 3.11
405 406 7.198390 CACTGGCAATAATCACTAAAAGGATG 58.802 38.462 0.00 0.00 0.00 3.51
458 459 3.802948 TCGGAGCCAGAGAAAGATAAC 57.197 47.619 0.00 0.00 0.00 1.89
469 470 6.459066 CAGAGAAAGATAACACTCCTCAACA 58.541 40.000 0.00 0.00 0.00 3.33
474 475 3.324846 AGATAACACTCCTCAACAGCACA 59.675 43.478 0.00 0.00 0.00 4.57
487 488 2.427410 GCACAAGCGAGCAAACGG 60.427 61.111 0.00 0.00 0.00 4.44
488 489 3.022287 CACAAGCGAGCAAACGGT 58.978 55.556 0.00 0.00 45.67 4.83
491 493 3.660111 AAGCGAGCAAACGGTGGC 61.660 61.111 0.00 0.00 43.02 5.01
513 515 1.148157 AGACTCGATTTCGCGCCATG 61.148 55.000 0.00 0.00 39.60 3.66
528 530 0.861185 CCATGCGACACCGACATATG 59.139 55.000 0.00 0.00 38.22 1.78
536 538 3.001070 CGACACCGACATATGTTTTCTCG 60.001 47.826 10.30 8.29 38.22 4.04
537 539 3.921677 ACACCGACATATGTTTTCTCGT 58.078 40.909 10.30 0.68 0.00 4.18
576 579 2.241176 CCCCCATACAATGTGGTGTACT 59.759 50.000 0.00 0.00 36.83 2.73
603 606 6.128634 CGTTCCTCTTTTACGCTTGACTAAAT 60.129 38.462 0.00 0.00 0.00 1.40
604 607 7.570691 CGTTCCTCTTTTACGCTTGACTAAATT 60.571 37.037 0.00 0.00 0.00 1.82
612 615 7.485418 TTACGCTTGACTAAATTTGACTTGA 57.515 32.000 0.00 0.00 0.00 3.02
648 653 6.786103 CGATTCAAACTTTTCTAACGAGTGAC 59.214 38.462 0.00 0.00 0.00 3.67
677 687 7.011202 TGTGCTTTAAAGTTCATACGTGTACAA 59.989 33.333 16.38 0.00 0.00 2.41
745 756 1.281867 CACCAAACAGGCCCTATGAGA 59.718 52.381 0.00 0.00 43.14 3.27
909 939 5.456619 CCACCCCTCATCTATAAATTGCTGA 60.457 44.000 0.00 0.00 0.00 4.26
952 1347 0.600255 CCAGCCGTTCGAGTTCAACT 60.600 55.000 0.00 0.00 0.00 3.16
953 1348 0.784778 CAGCCGTTCGAGTTCAACTC 59.215 55.000 7.56 7.56 41.71 3.01
1121 1560 0.618458 TTCTTCCCCTGTTCCCATCG 59.382 55.000 0.00 0.00 0.00 3.84
1482 1958 1.000396 GCCCAAGGACATCCAGCTT 60.000 57.895 0.00 0.00 38.89 3.74
1540 2017 6.183361 CCTGGATCGGAGATCCTATACTATCT 60.183 46.154 24.32 0.00 45.12 1.98
1576 2057 6.697455 TGTAAGATAGCTAGTTGATTCGCTTG 59.303 38.462 0.00 0.00 34.14 4.01
1658 2139 8.981724 TTCGCTGTAAATATCATATGTAGTCC 57.018 34.615 1.90 0.00 0.00 3.85
1689 2170 8.642020 CAAATAAGTGTATGCTGCTTTTTCTTC 58.358 33.333 0.00 0.00 0.00 2.87
1701 2182 6.144563 GCTGCTTTTTCTTCTGGTTATGTTTC 59.855 38.462 0.00 0.00 0.00 2.78
1707 2188 9.801873 TTTTTCTTCTGGTTATGTTTCTGAAAG 57.198 29.630 2.48 0.00 0.00 2.62
1739 2220 8.720562 CAATATTGGCGTATCATTATCTGTTCA 58.279 33.333 7.62 0.00 0.00 3.18
1755 2236 5.237815 TCTGTTCAGAGCAATCACGTAATT 58.762 37.500 0.00 0.00 0.00 1.40
1780 2261 2.357952 GCCTTCTGTTCTTTCAACCGTT 59.642 45.455 0.00 0.00 0.00 4.44
1806 2305 3.118408 GGAGCTACACATTGACCATGGTA 60.118 47.826 19.80 2.89 37.17 3.25
1834 2333 4.341806 TGGTGATCATGCCAAAATGGATAC 59.658 41.667 0.00 0.00 40.96 2.24
1854 2353 8.371770 GGATACATTCCATGAGTTCTTAGTTC 57.628 38.462 0.00 0.00 44.74 3.01
1855 2354 8.207545 GGATACATTCCATGAGTTCTTAGTTCT 58.792 37.037 0.00 0.00 44.74 3.01
1856 2355 9.606631 GATACATTCCATGAGTTCTTAGTTCTT 57.393 33.333 0.00 0.00 0.00 2.52
1868 2367 4.952460 TCTTAGTTCTTACGCCTTGTGTT 58.048 39.130 0.00 0.00 0.00 3.32
1872 2371 1.774639 TCTTACGCCTTGTGTTCGAC 58.225 50.000 0.00 0.00 0.00 4.20
1897 2396 1.670791 ACGCCTTTTCTTTGACGGAA 58.329 45.000 0.00 0.00 0.00 4.30
1914 2413 3.177605 GGAACGTCAATGTTGTTACCG 57.822 47.619 0.00 0.00 30.75 4.02
2022 2525 1.270550 CCAAAACCAGAGTGATGTGCC 59.729 52.381 0.00 0.00 0.00 5.01
2080 2586 1.922447 ACATCATCCCCACTTTAGGCA 59.078 47.619 0.00 0.00 0.00 4.75
2103 2609 6.183360 GCATCAAATCATCTTCACATTCAGGA 60.183 38.462 0.00 0.00 0.00 3.86
2105 2611 7.387119 TCAAATCATCTTCACATTCAGGAAG 57.613 36.000 0.00 0.00 41.42 3.46
2133 2674 8.186178 AGCACTTTCACGTATGAATAAGTAAG 57.814 34.615 0.00 0.00 44.36 2.34
2178 2721 5.769662 TGAAACCAATTGACTTGCATAGAGT 59.230 36.000 7.12 0.00 33.20 3.24
2233 2778 2.102578 TCCTCGTTCATCTGCATCTGA 58.897 47.619 0.00 0.00 0.00 3.27
2326 2877 6.656693 AGGACACACAATTTGAGAGAAATAGG 59.343 38.462 2.79 0.00 0.00 2.57
2338 2892 5.072329 TGAGAGAAATAGGACCCATGGATTC 59.928 44.000 15.22 9.13 0.00 2.52
2339 2893 4.040952 AGAGAAATAGGACCCATGGATTCG 59.959 45.833 15.22 0.00 0.00 3.34
2345 2899 4.603535 CCCATGGATTCGGCCCCC 62.604 72.222 15.22 0.00 0.00 5.40
2370 2924 1.338020 CAACTGAAAGACCTGGCCAAC 59.662 52.381 7.01 0.96 37.43 3.77
2377 2931 0.110486 AGACCTGGCCAACGTCATTT 59.890 50.000 26.49 10.10 0.00 2.32
2378 2932 0.958822 GACCTGGCCAACGTCATTTT 59.041 50.000 22.12 0.00 0.00 1.82
2379 2933 1.339929 GACCTGGCCAACGTCATTTTT 59.660 47.619 22.12 0.00 0.00 1.94
2398 2952 4.939509 TTTTTACGTGAATAGCAGGAGC 57.060 40.909 0.00 0.00 42.56 4.70
2424 2978 6.247229 TGCCTTTGCATTATAGTAGGAAGA 57.753 37.500 0.00 0.00 44.23 2.87
2425 2979 6.658849 TGCCTTTGCATTATAGTAGGAAGAA 58.341 36.000 0.00 0.00 44.23 2.52
2427 2981 7.283127 TGCCTTTGCATTATAGTAGGAAGAAAG 59.717 37.037 0.00 0.00 44.23 2.62
2428 2982 7.499232 GCCTTTGCATTATAGTAGGAAGAAAGA 59.501 37.037 0.00 0.00 37.47 2.52
2429 2983 9.050601 CCTTTGCATTATAGTAGGAAGAAAGAG 57.949 37.037 0.00 0.00 0.00 2.85
2431 2985 7.676683 TGCATTATAGTAGGAAGAAAGAGGT 57.323 36.000 0.00 0.00 0.00 3.85
2433 2987 8.639761 TGCATTATAGTAGGAAGAAAGAGGTAC 58.360 37.037 0.00 0.00 0.00 3.34
2434 2988 8.639761 GCATTATAGTAGGAAGAAAGAGGTACA 58.360 37.037 0.00 0.00 0.00 2.90
2438 2992 6.593268 AGTAGGAAGAAAGAGGTACAGAAC 57.407 41.667 0.00 0.00 0.00 3.01
2465 3504 2.571653 AGGGAAGATCCGTGTTCAATCA 59.428 45.455 0.00 0.00 37.43 2.57
2466 3505 2.678336 GGGAAGATCCGTGTTCAATCAC 59.322 50.000 0.00 0.00 37.43 3.06
2470 3509 4.478206 AGATCCGTGTTCAATCACTCAT 57.522 40.909 0.00 0.00 36.33 2.90
2477 3516 5.006068 CCGTGTTCAATCACTCATACATCAG 59.994 44.000 0.00 0.00 36.33 2.90
2478 3517 5.578336 CGTGTTCAATCACTCATACATCAGT 59.422 40.000 0.00 0.00 36.33 3.41
2479 3518 6.454715 CGTGTTCAATCACTCATACATCAGTG 60.455 42.308 0.00 0.00 41.32 3.66
2480 3519 5.876460 TGTTCAATCACTCATACATCAGTGG 59.124 40.000 0.00 0.00 40.49 4.00
2481 3520 5.027293 TCAATCACTCATACATCAGTGGG 57.973 43.478 0.00 0.00 40.49 4.61
2483 3522 4.952071 ATCACTCATACATCAGTGGGAG 57.048 45.455 0.00 0.00 40.49 4.30
2484 3523 3.033909 TCACTCATACATCAGTGGGAGG 58.966 50.000 0.00 0.00 40.49 4.30
2487 3526 3.452627 ACTCATACATCAGTGGGAGGTTC 59.547 47.826 0.00 0.00 41.51 3.62
2488 3527 3.449918 TCATACATCAGTGGGAGGTTCA 58.550 45.455 0.00 0.00 41.51 3.18
2489 3528 3.843619 TCATACATCAGTGGGAGGTTCAA 59.156 43.478 0.00 0.00 41.51 2.69
2490 3529 4.474651 TCATACATCAGTGGGAGGTTCAAT 59.525 41.667 0.00 0.00 41.51 2.57
2491 3530 3.356529 ACATCAGTGGGAGGTTCAATC 57.643 47.619 0.00 0.00 37.17 2.67
2492 3531 2.644299 ACATCAGTGGGAGGTTCAATCA 59.356 45.455 0.00 0.00 37.17 2.57
2494 3533 2.338809 TCAGTGGGAGGTTCAATCACT 58.661 47.619 0.00 0.00 38.99 3.41
2495 3534 2.303022 TCAGTGGGAGGTTCAATCACTC 59.697 50.000 0.00 0.00 36.66 3.51
2496 3535 2.038952 CAGTGGGAGGTTCAATCACTCA 59.961 50.000 0.00 0.00 36.66 3.41
2497 3536 2.915604 AGTGGGAGGTTCAATCACTCAT 59.084 45.455 0.00 0.00 34.00 2.90
2498 3537 4.080919 CAGTGGGAGGTTCAATCACTCATA 60.081 45.833 0.00 0.00 36.66 2.15
2500 3539 4.080863 GTGGGAGGTTCAATCACTCATACT 60.081 45.833 0.00 0.00 32.98 2.12
2501 3540 5.128827 GTGGGAGGTTCAATCACTCATACTA 59.871 44.000 0.00 0.00 32.98 1.82
2502 3541 5.128827 TGGGAGGTTCAATCACTCATACTAC 59.871 44.000 0.00 0.00 32.98 2.73
2503 3542 5.282510 GGAGGTTCAATCACTCATACTACG 58.717 45.833 0.00 0.00 32.98 3.51
2504 3543 5.067413 GGAGGTTCAATCACTCATACTACGA 59.933 44.000 0.00 0.00 32.98 3.43
2505 3544 6.239064 GGAGGTTCAATCACTCATACTACGAT 60.239 42.308 0.00 0.00 32.98 3.73
2506 3545 6.507900 AGGTTCAATCACTCATACTACGATG 58.492 40.000 0.00 0.00 0.00 3.84
2507 3546 5.175856 GGTTCAATCACTCATACTACGATGC 59.824 44.000 0.00 0.00 0.00 3.91
2508 3547 5.514274 TCAATCACTCATACTACGATGCA 57.486 39.130 0.00 0.00 0.00 3.96
2509 3548 6.089249 TCAATCACTCATACTACGATGCAT 57.911 37.500 0.00 0.00 0.00 3.96
2510 3549 5.922544 TCAATCACTCATACTACGATGCATG 59.077 40.000 2.46 0.00 0.00 4.06
2512 3551 5.514274 TCACTCATACTACGATGCATGAA 57.486 39.130 2.46 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 8.822805 TCCAATCTAAACTACATCTACAAAGGT 58.177 33.333 0.00 0.00 0.00 3.50
2 3 9.099454 GTCCAATCTAAACTACATCTACAAAGG 57.901 37.037 0.00 0.00 0.00 3.11
3 4 9.653287 TGTCCAATCTAAACTACATCTACAAAG 57.347 33.333 0.00 0.00 0.00 2.77
5 6 9.817809 GATGTCCAATCTAAACTACATCTACAA 57.182 33.333 0.00 0.00 39.88 2.41
6 7 8.421784 GGATGTCCAATCTAAACTACATCTACA 58.578 37.037 11.68 0.00 41.72 2.74
7 8 8.643324 AGGATGTCCAATCTAAACTACATCTAC 58.357 37.037 11.68 0.00 41.72 2.59
8 9 8.783660 AGGATGTCCAATCTAAACTACATCTA 57.216 34.615 11.68 0.00 41.72 1.98
9 10 7.566879 AGAGGATGTCCAATCTAAACTACATCT 59.433 37.037 11.68 0.00 41.72 2.90
10 11 7.655328 CAGAGGATGTCCAATCTAAACTACATC 59.345 40.741 1.30 0.00 41.44 3.06
11 12 7.419518 CCAGAGGATGTCCAATCTAAACTACAT 60.420 40.741 1.30 0.00 38.89 2.29
12 13 6.127054 CCAGAGGATGTCCAATCTAAACTACA 60.127 42.308 1.30 0.00 38.89 2.74
13 14 6.284459 CCAGAGGATGTCCAATCTAAACTAC 58.716 44.000 1.30 0.00 38.89 2.73
14 15 5.163301 GCCAGAGGATGTCCAATCTAAACTA 60.163 44.000 1.30 0.00 38.89 2.24
15 16 4.384647 GCCAGAGGATGTCCAATCTAAACT 60.385 45.833 1.30 0.00 38.89 2.66
16 17 3.879892 GCCAGAGGATGTCCAATCTAAAC 59.120 47.826 1.30 0.00 38.89 2.01
17 18 3.782523 AGCCAGAGGATGTCCAATCTAAA 59.217 43.478 1.30 0.00 38.89 1.85
18 19 3.387962 AGCCAGAGGATGTCCAATCTAA 58.612 45.455 1.30 0.00 38.89 2.10
19 20 3.051940 AGCCAGAGGATGTCCAATCTA 57.948 47.619 1.30 0.00 38.89 1.98
20 21 1.890552 AGCCAGAGGATGTCCAATCT 58.109 50.000 1.30 0.00 38.89 2.40
21 22 3.616076 CGATAGCCAGAGGATGTCCAATC 60.616 52.174 1.30 0.00 38.89 2.67
22 23 2.301296 CGATAGCCAGAGGATGTCCAAT 59.699 50.000 1.30 0.00 38.89 3.16
23 24 1.688735 CGATAGCCAGAGGATGTCCAA 59.311 52.381 1.30 0.00 38.89 3.53
24 25 1.332195 CGATAGCCAGAGGATGTCCA 58.668 55.000 1.30 0.00 38.89 4.02
38 39 3.741344 GGTACAATGTTAGCCAGCGATAG 59.259 47.826 0.00 0.00 0.00 2.08
39 40 3.133183 TGGTACAATGTTAGCCAGCGATA 59.867 43.478 0.00 0.00 31.92 2.92
40 41 2.093181 TGGTACAATGTTAGCCAGCGAT 60.093 45.455 0.00 0.00 31.92 4.58
41 42 1.276705 TGGTACAATGTTAGCCAGCGA 59.723 47.619 0.00 0.00 31.92 4.93
42 43 1.732941 TGGTACAATGTTAGCCAGCG 58.267 50.000 0.00 0.00 31.92 5.18
52 53 7.041167 AATCATGTGATCCGTTATGGTACAATG 60.041 37.037 0.00 1.35 36.04 2.82
53 54 6.998074 AATCATGTGATCCGTTATGGTACAAT 59.002 34.615 0.00 0.00 36.04 2.71
54 55 6.353323 AATCATGTGATCCGTTATGGTACAA 58.647 36.000 0.00 0.00 36.04 2.41
55 56 5.924356 AATCATGTGATCCGTTATGGTACA 58.076 37.500 0.00 0.00 36.73 2.90
56 57 5.408604 GGAATCATGTGATCCGTTATGGTAC 59.591 44.000 0.00 0.00 39.52 3.34
57 58 5.512404 GGGAATCATGTGATCCGTTATGGTA 60.512 44.000 0.00 0.00 39.52 3.25
58 59 4.389374 GGAATCATGTGATCCGTTATGGT 58.611 43.478 0.00 0.00 39.52 3.55
59 60 3.753272 GGGAATCATGTGATCCGTTATGG 59.247 47.826 0.00 0.00 40.09 2.74
60 61 4.388485 TGGGAATCATGTGATCCGTTATG 58.612 43.478 0.00 0.00 32.75 1.90
61 62 4.705110 TGGGAATCATGTGATCCGTTAT 57.295 40.909 0.00 0.00 32.75 1.89
62 63 4.705110 ATGGGAATCATGTGATCCGTTA 57.295 40.909 0.00 0.00 34.22 3.18
63 64 3.582998 ATGGGAATCATGTGATCCGTT 57.417 42.857 0.00 0.00 34.22 4.44
64 65 3.216800 CAATGGGAATCATGTGATCCGT 58.783 45.455 0.00 0.00 35.99 4.69
65 66 2.030540 GCAATGGGAATCATGTGATCCG 60.031 50.000 0.00 0.00 35.99 4.18
66 67 2.030540 CGCAATGGGAATCATGTGATCC 60.031 50.000 0.00 0.00 35.99 3.36
67 68 2.880268 TCGCAATGGGAATCATGTGATC 59.120 45.455 0.00 0.00 35.99 2.92
68 69 2.934887 TCGCAATGGGAATCATGTGAT 58.065 42.857 0.00 0.00 35.99 3.06
69 70 2.416680 TCGCAATGGGAATCATGTGA 57.583 45.000 0.00 0.00 35.99 3.58
70 71 2.619646 TCATCGCAATGGGAATCATGTG 59.380 45.455 3.62 0.00 35.99 3.21
71 72 2.934887 TCATCGCAATGGGAATCATGT 58.065 42.857 3.62 0.00 35.99 3.21
72 73 3.635331 GTTCATCGCAATGGGAATCATG 58.365 45.455 3.62 0.00 35.99 3.07
73 74 2.291465 CGTTCATCGCAATGGGAATCAT 59.709 45.455 3.62 0.00 37.79 2.45
74 75 1.670295 CGTTCATCGCAATGGGAATCA 59.330 47.619 3.62 0.00 33.42 2.57
75 76 1.939934 TCGTTCATCGCAATGGGAATC 59.060 47.619 3.62 0.00 39.67 2.52
76 77 1.670811 GTCGTTCATCGCAATGGGAAT 59.329 47.619 3.62 0.00 39.67 3.01
77 78 1.083489 GTCGTTCATCGCAATGGGAA 58.917 50.000 3.62 0.00 39.67 3.97
78 79 0.249120 AGTCGTTCATCGCAATGGGA 59.751 50.000 1.63 1.63 39.67 4.37
79 80 0.652592 GAGTCGTTCATCGCAATGGG 59.347 55.000 0.00 0.00 39.67 4.00
80 81 1.590238 GAGAGTCGTTCATCGCAATGG 59.410 52.381 0.00 0.00 39.67 3.16
81 82 2.534298 AGAGAGTCGTTCATCGCAATG 58.466 47.619 0.00 0.00 39.67 2.82
82 83 2.926200 CAAGAGAGTCGTTCATCGCAAT 59.074 45.455 0.00 0.00 39.67 3.56
83 84 2.288213 ACAAGAGAGTCGTTCATCGCAA 60.288 45.455 0.00 0.00 39.67 4.85
84 85 1.269723 ACAAGAGAGTCGTTCATCGCA 59.730 47.619 0.00 0.00 39.67 5.10
85 86 1.651138 CACAAGAGAGTCGTTCATCGC 59.349 52.381 0.00 0.00 39.67 4.58
86 87 3.203161 TCACAAGAGAGTCGTTCATCG 57.797 47.619 0.00 0.00 41.41 3.84
87 88 5.164233 TGATTCACAAGAGAGTCGTTCATC 58.836 41.667 0.00 0.00 0.00 2.92
88 89 5.139435 TGATTCACAAGAGAGTCGTTCAT 57.861 39.130 0.00 0.00 0.00 2.57
89 90 4.550422 CTGATTCACAAGAGAGTCGTTCA 58.450 43.478 0.00 0.00 0.00 3.18
90 91 3.366422 GCTGATTCACAAGAGAGTCGTTC 59.634 47.826 0.00 0.00 0.00 3.95
91 92 3.243873 TGCTGATTCACAAGAGAGTCGTT 60.244 43.478 0.00 0.00 0.00 3.85
92 93 2.297315 TGCTGATTCACAAGAGAGTCGT 59.703 45.455 0.00 0.00 0.00 4.34
93 94 2.951726 TGCTGATTCACAAGAGAGTCG 58.048 47.619 0.00 0.00 0.00 4.18
94 95 4.329528 GTCATGCTGATTCACAAGAGAGTC 59.670 45.833 0.00 0.00 0.00 3.36
95 96 4.020396 AGTCATGCTGATTCACAAGAGAGT 60.020 41.667 0.00 0.00 0.00 3.24
96 97 4.505808 AGTCATGCTGATTCACAAGAGAG 58.494 43.478 0.00 0.00 0.00 3.20
97 98 4.222366 AGAGTCATGCTGATTCACAAGAGA 59.778 41.667 9.93 0.00 35.82 3.10
98 99 4.505808 AGAGTCATGCTGATTCACAAGAG 58.494 43.478 9.93 0.00 35.82 2.85
99 100 4.548451 AGAGTCATGCTGATTCACAAGA 57.452 40.909 9.93 0.00 35.82 3.02
100 101 4.142665 CCAAGAGTCATGCTGATTCACAAG 60.143 45.833 9.93 0.00 35.82 3.16
101 102 3.754850 CCAAGAGTCATGCTGATTCACAA 59.245 43.478 9.93 0.00 35.82 3.33
102 103 3.244665 ACCAAGAGTCATGCTGATTCACA 60.245 43.478 9.93 0.00 35.82 3.58
103 104 3.341823 ACCAAGAGTCATGCTGATTCAC 58.658 45.455 9.93 0.00 35.82 3.18
104 105 3.708403 ACCAAGAGTCATGCTGATTCA 57.292 42.857 9.93 0.00 35.82 2.57
105 106 4.005650 TCAACCAAGAGTCATGCTGATTC 58.994 43.478 0.00 2.01 33.86 2.52
106 107 4.025040 TCAACCAAGAGTCATGCTGATT 57.975 40.909 0.00 0.00 0.00 2.57
107 108 3.708403 TCAACCAAGAGTCATGCTGAT 57.292 42.857 0.00 0.00 0.00 2.90
108 109 3.490439 TTCAACCAAGAGTCATGCTGA 57.510 42.857 0.00 0.00 0.00 4.26
109 110 3.754850 TGATTCAACCAAGAGTCATGCTG 59.245 43.478 0.00 0.00 30.52 4.41
110 111 3.755378 GTGATTCAACCAAGAGTCATGCT 59.245 43.478 0.00 0.00 36.77 3.79
111 112 3.503363 TGTGATTCAACCAAGAGTCATGC 59.497 43.478 0.00 0.00 36.77 4.06
112 113 5.694231 TTGTGATTCAACCAAGAGTCATG 57.306 39.130 0.00 0.00 36.77 3.07
120 121 9.240303 CCAAACTGGTAGTTGTGATTCAACCAA 62.240 40.741 8.19 0.00 43.61 3.67
121 122 7.854204 CCAAACTGGTAGTTGTGATTCAACCA 61.854 42.308 6.91 6.91 43.61 3.67
122 123 5.507315 CCAAACTGGTAGTTGTGATTCAACC 60.507 44.000 7.03 0.00 43.61 3.77
123 124 5.519722 CCAAACTGGTAGTTGTGATTCAAC 58.480 41.667 2.97 2.97 43.28 3.18
124 125 5.766150 CCAAACTGGTAGTTGTGATTCAA 57.234 39.130 0.00 0.00 38.66 2.69
138 139 3.473923 AAATTCAGGCAACCAAACTGG 57.526 42.857 0.00 0.00 45.02 4.00
139 140 4.942852 TGTAAATTCAGGCAACCAAACTG 58.057 39.130 0.00 0.00 37.17 3.16
140 141 4.501400 GCTGTAAATTCAGGCAACCAAACT 60.501 41.667 0.00 0.00 36.12 2.66
141 142 3.740832 GCTGTAAATTCAGGCAACCAAAC 59.259 43.478 0.00 0.00 36.12 2.93
142 143 3.640967 AGCTGTAAATTCAGGCAACCAAA 59.359 39.130 0.00 0.00 36.12 3.28
143 144 3.230134 AGCTGTAAATTCAGGCAACCAA 58.770 40.909 0.00 0.00 36.12 3.67
144 145 2.875296 AGCTGTAAATTCAGGCAACCA 58.125 42.857 0.00 0.00 36.12 3.67
145 146 3.942130 AAGCTGTAAATTCAGGCAACC 57.058 42.857 0.00 0.00 36.12 3.77
146 147 4.870363 TGAAAGCTGTAAATTCAGGCAAC 58.130 39.130 0.00 0.00 36.12 4.17
147 148 5.163468 TGTTGAAAGCTGTAAATTCAGGCAA 60.163 36.000 0.00 0.00 34.80 4.52
148 149 4.340666 TGTTGAAAGCTGTAAATTCAGGCA 59.659 37.500 0.00 0.00 34.80 4.75
149 150 4.870363 TGTTGAAAGCTGTAAATTCAGGC 58.130 39.130 0.00 0.00 34.80 4.85
150 151 7.951530 AAATGTTGAAAGCTGTAAATTCAGG 57.048 32.000 0.00 0.00 34.80 3.86
176 177 2.607635 GCAACATCGATTTCGCTAGGAA 59.392 45.455 0.00 0.00 39.60 3.36
177 178 2.201732 GCAACATCGATTTCGCTAGGA 58.798 47.619 0.00 0.00 39.60 2.94
178 179 1.071239 CGCAACATCGATTTCGCTAGG 60.071 52.381 0.00 0.00 39.60 3.02
179 180 1.071239 CCGCAACATCGATTTCGCTAG 60.071 52.381 0.00 0.00 39.60 3.42
180 181 0.927537 CCGCAACATCGATTTCGCTA 59.072 50.000 0.00 0.00 39.60 4.26
181 182 1.019278 ACCGCAACATCGATTTCGCT 61.019 50.000 0.00 0.00 39.60 4.93
182 183 0.648441 TACCGCAACATCGATTTCGC 59.352 50.000 0.00 0.00 39.60 4.70
183 184 2.347452 ACTTACCGCAACATCGATTTCG 59.653 45.455 0.00 0.00 41.45 3.46
184 185 5.459110 TTACTTACCGCAACATCGATTTC 57.541 39.130 0.00 0.00 0.00 2.17
185 186 5.640357 TCTTTACTTACCGCAACATCGATTT 59.360 36.000 0.00 0.00 0.00 2.17
186 187 5.172934 TCTTTACTTACCGCAACATCGATT 58.827 37.500 0.00 0.00 0.00 3.34
187 188 4.751060 TCTTTACTTACCGCAACATCGAT 58.249 39.130 0.00 0.00 0.00 3.59
188 189 4.177165 TCTTTACTTACCGCAACATCGA 57.823 40.909 0.00 0.00 0.00 3.59
189 190 4.565166 TCATCTTTACTTACCGCAACATCG 59.435 41.667 0.00 0.00 0.00 3.84
190 191 6.417191 TTCATCTTTACTTACCGCAACATC 57.583 37.500 0.00 0.00 0.00 3.06
191 192 6.811253 TTTCATCTTTACTTACCGCAACAT 57.189 33.333 0.00 0.00 0.00 2.71
192 193 6.401688 CGATTTCATCTTTACTTACCGCAACA 60.402 38.462 0.00 0.00 0.00 3.33
193 194 5.957796 CGATTTCATCTTTACTTACCGCAAC 59.042 40.000 0.00 0.00 0.00 4.17
194 195 5.870433 TCGATTTCATCTTTACTTACCGCAA 59.130 36.000 0.00 0.00 0.00 4.85
195 196 5.290158 GTCGATTTCATCTTTACTTACCGCA 59.710 40.000 0.00 0.00 0.00 5.69
196 197 5.276726 GGTCGATTTCATCTTTACTTACCGC 60.277 44.000 0.00 0.00 0.00 5.68
197 198 6.040878 AGGTCGATTTCATCTTTACTTACCG 58.959 40.000 0.00 0.00 0.00 4.02
198 199 7.845066 AAGGTCGATTTCATCTTTACTTACC 57.155 36.000 0.00 0.00 0.00 2.85
199 200 9.362539 TGTAAGGTCGATTTCATCTTTACTTAC 57.637 33.333 0.00 0.00 0.00 2.34
201 202 9.099454 GATGTAAGGTCGATTTCATCTTTACTT 57.901 33.333 9.75 2.85 35.36 2.24
202 203 7.711339 GGATGTAAGGTCGATTTCATCTTTACT 59.289 37.037 14.27 0.00 37.23 2.24
203 204 7.711339 AGGATGTAAGGTCGATTTCATCTTTAC 59.289 37.037 14.27 7.19 37.23 2.01
204 205 7.792032 AGGATGTAAGGTCGATTTCATCTTTA 58.208 34.615 14.27 0.00 37.23 1.85
205 206 6.653989 AGGATGTAAGGTCGATTTCATCTTT 58.346 36.000 14.27 5.07 37.23 2.52
206 207 6.240549 AGGATGTAAGGTCGATTTCATCTT 57.759 37.500 14.27 7.41 37.23 2.40
207 208 5.878406 AGGATGTAAGGTCGATTTCATCT 57.122 39.130 14.27 3.23 37.23 2.90
208 209 5.927115 GGTAGGATGTAAGGTCGATTTCATC 59.073 44.000 8.90 8.90 36.67 2.92
209 210 5.602978 AGGTAGGATGTAAGGTCGATTTCAT 59.397 40.000 0.00 0.00 0.00 2.57
210 211 4.960469 AGGTAGGATGTAAGGTCGATTTCA 59.040 41.667 0.00 0.00 0.00 2.69
211 212 5.532664 AGGTAGGATGTAAGGTCGATTTC 57.467 43.478 0.00 0.00 0.00 2.17
212 213 6.837568 TCTTAGGTAGGATGTAAGGTCGATTT 59.162 38.462 0.00 0.00 0.00 2.17
213 214 6.264970 GTCTTAGGTAGGATGTAAGGTCGATT 59.735 42.308 0.00 0.00 0.00 3.34
214 215 5.769162 GTCTTAGGTAGGATGTAAGGTCGAT 59.231 44.000 0.00 0.00 0.00 3.59
215 216 5.128919 GTCTTAGGTAGGATGTAAGGTCGA 58.871 45.833 0.00 0.00 0.00 4.20
216 217 4.277921 GGTCTTAGGTAGGATGTAAGGTCG 59.722 50.000 0.00 0.00 0.00 4.79
217 218 4.588106 GGGTCTTAGGTAGGATGTAAGGTC 59.412 50.000 0.00 0.00 0.00 3.85
218 219 4.015918 TGGGTCTTAGGTAGGATGTAAGGT 60.016 45.833 0.00 0.00 0.00 3.50
219 220 4.553678 TGGGTCTTAGGTAGGATGTAAGG 58.446 47.826 0.00 0.00 0.00 2.69
220 221 5.424252 TGTTGGGTCTTAGGTAGGATGTAAG 59.576 44.000 0.00 0.00 0.00 2.34
221 222 5.343715 TGTTGGGTCTTAGGTAGGATGTAA 58.656 41.667 0.00 0.00 0.00 2.41
222 223 4.950361 TGTTGGGTCTTAGGTAGGATGTA 58.050 43.478 0.00 0.00 0.00 2.29
223 224 3.775316 CTGTTGGGTCTTAGGTAGGATGT 59.225 47.826 0.00 0.00 0.00 3.06
224 225 3.775316 ACTGTTGGGTCTTAGGTAGGATG 59.225 47.826 0.00 0.00 0.00 3.51
225 226 3.775316 CACTGTTGGGTCTTAGGTAGGAT 59.225 47.826 0.00 0.00 0.00 3.24
226 227 3.170717 CACTGTTGGGTCTTAGGTAGGA 58.829 50.000 0.00 0.00 0.00 2.94
227 228 2.236395 CCACTGTTGGGTCTTAGGTAGG 59.764 54.545 0.00 0.00 39.57 3.18
228 229 3.611766 CCACTGTTGGGTCTTAGGTAG 57.388 52.381 0.00 0.00 39.57 3.18
240 241 2.045561 TACAACCACCACCACTGTTG 57.954 50.000 0.00 0.00 42.80 3.33
241 242 2.582052 CATACAACCACCACCACTGTT 58.418 47.619 0.00 0.00 0.00 3.16
242 243 1.817740 GCATACAACCACCACCACTGT 60.818 52.381 0.00 0.00 0.00 3.55
243 244 0.881118 GCATACAACCACCACCACTG 59.119 55.000 0.00 0.00 0.00 3.66
244 245 0.771127 AGCATACAACCACCACCACT 59.229 50.000 0.00 0.00 0.00 4.00
245 246 0.881118 CAGCATACAACCACCACCAC 59.119 55.000 0.00 0.00 0.00 4.16
246 247 0.893270 GCAGCATACAACCACCACCA 60.893 55.000 0.00 0.00 0.00 4.17
247 248 0.609131 AGCAGCATACAACCACCACC 60.609 55.000 0.00 0.00 0.00 4.61
248 249 1.247567 AAGCAGCATACAACCACCAC 58.752 50.000 0.00 0.00 0.00 4.16
249 250 2.432444 GTAAGCAGCATACAACCACCA 58.568 47.619 2.83 0.00 0.00 4.17
250 251 1.743394 GGTAAGCAGCATACAACCACC 59.257 52.381 9.90 0.00 0.00 4.61
251 252 1.396996 CGGTAAGCAGCATACAACCAC 59.603 52.381 9.90 0.00 0.00 4.16
252 253 1.732941 CGGTAAGCAGCATACAACCA 58.267 50.000 9.90 0.00 0.00 3.67
271 272 0.099436 GTGTCATTGGCTCGAATGGC 59.901 55.000 2.85 2.85 38.25 4.40
298 299 1.519719 CCTTCCTCTCTGCCTTCGG 59.480 63.158 0.00 0.00 0.00 4.30
300 301 0.618968 TCCCCTTCCTCTCTGCCTTC 60.619 60.000 0.00 0.00 0.00 3.46
301 302 0.912006 GTCCCCTTCCTCTCTGCCTT 60.912 60.000 0.00 0.00 0.00 4.35
304 305 0.251634 CTTGTCCCCTTCCTCTCTGC 59.748 60.000 0.00 0.00 0.00 4.26
305 306 0.251634 GCTTGTCCCCTTCCTCTCTG 59.748 60.000 0.00 0.00 0.00 3.35
321 322 1.539869 TCCCCTCCAAGAGCTGCTT 60.540 57.895 2.53 0.00 37.29 3.91
323 324 1.557269 TTCTCCCCTCCAAGAGCTGC 61.557 60.000 0.00 0.00 0.00 5.25
332 333 2.371259 GGACCTGCTTCTCCCCTCC 61.371 68.421 0.00 0.00 0.00 4.30
333 334 1.306568 AGGACCTGCTTCTCCCCTC 60.307 63.158 0.00 0.00 0.00 4.30
336 337 1.920835 ACCAGGACCTGCTTCTCCC 60.921 63.158 16.72 0.00 0.00 4.30
337 338 1.298014 CACCAGGACCTGCTTCTCC 59.702 63.158 16.72 0.00 0.00 3.71
338 339 1.376553 GCACCAGGACCTGCTTCTC 60.377 63.158 16.72 0.00 0.00 2.87
339 340 2.753029 GCACCAGGACCTGCTTCT 59.247 61.111 16.72 0.00 0.00 2.85
340 341 2.360475 GGCACCAGGACCTGCTTC 60.360 66.667 16.72 6.29 33.63 3.86
341 342 3.177884 TGGCACCAGGACCTGCTT 61.178 61.111 16.72 1.74 33.63 3.91
342 343 3.644606 CTGGCACCAGGACCTGCT 61.645 66.667 16.72 0.00 40.17 4.24
343 344 3.618780 CTCTGGCACCAGGACCTGC 62.619 68.421 16.72 5.77 43.75 4.85
344 345 1.270414 ATCTCTGGCACCAGGACCTG 61.270 60.000 15.15 15.15 43.75 4.00
345 346 0.548682 AATCTCTGGCACCAGGACCT 60.549 55.000 16.52 0.00 43.75 3.85
346 347 0.329596 AAATCTCTGGCACCAGGACC 59.670 55.000 16.52 0.00 43.75 4.46
348 349 2.356125 GCTTAAATCTCTGGCACCAGGA 60.356 50.000 16.52 12.52 43.75 3.86
350 351 2.019984 GGCTTAAATCTCTGGCACCAG 58.980 52.381 10.60 10.60 44.86 4.00
351 352 1.354031 TGGCTTAAATCTCTGGCACCA 59.646 47.619 0.00 0.00 0.00 4.17
352 353 2.128771 TGGCTTAAATCTCTGGCACC 57.871 50.000 0.00 0.00 0.00 5.01
353 354 2.159517 CGTTGGCTTAAATCTCTGGCAC 60.160 50.000 0.00 0.00 34.78 5.01
354 355 2.083774 CGTTGGCTTAAATCTCTGGCA 58.916 47.619 0.00 0.00 0.00 4.92
355 356 2.084546 ACGTTGGCTTAAATCTCTGGC 58.915 47.619 0.00 0.00 0.00 4.85
356 357 2.348666 CGACGTTGGCTTAAATCTCTGG 59.651 50.000 0.00 0.00 0.00 3.86
357 358 2.222819 GCGACGTTGGCTTAAATCTCTG 60.223 50.000 4.64 0.00 0.00 3.35
358 359 2.000447 GCGACGTTGGCTTAAATCTCT 59.000 47.619 4.64 0.00 0.00 3.10
360 361 1.084289 GGCGACGTTGGCTTAAATCT 58.916 50.000 21.49 0.00 0.00 2.40
361 362 0.098200 GGGCGACGTTGGCTTAAATC 59.902 55.000 26.64 7.25 34.31 2.17
362 363 0.606944 TGGGCGACGTTGGCTTAAAT 60.607 50.000 26.64 0.00 34.31 1.40
363 364 1.227883 TGGGCGACGTTGGCTTAAA 60.228 52.632 26.64 9.42 34.31 1.52
365 366 2.357760 GTGGGCGACGTTGGCTTA 60.358 61.111 26.64 14.67 34.31 3.09
366 367 4.250305 AGTGGGCGACGTTGGCTT 62.250 61.111 26.64 11.66 34.31 4.35
367 368 4.988598 CAGTGGGCGACGTTGGCT 62.989 66.667 26.64 6.54 34.31 4.75
378 379 5.163519 CCTTTTAGTGATTATTGCCAGTGGG 60.164 44.000 12.15 0.00 37.18 4.61
381 382 7.067494 GTCATCCTTTTAGTGATTATTGCCAGT 59.933 37.037 0.00 0.00 0.00 4.00
392 393 1.626321 TGCGGGTCATCCTTTTAGTGA 59.374 47.619 0.00 0.00 0.00 3.41
395 396 2.691409 TCTGCGGGTCATCCTTTTAG 57.309 50.000 0.00 0.00 0.00 1.85
402 403 5.560966 TTAAATTTCTTCTGCGGGTCATC 57.439 39.130 0.00 0.00 0.00 2.92
405 406 4.588278 CGATTAAATTTCTTCTGCGGGTC 58.412 43.478 0.00 0.00 0.00 4.46
458 459 0.590195 GCTTGTGCTGTTGAGGAGTG 59.410 55.000 0.00 0.00 36.03 3.51
469 470 2.633657 CGTTTGCTCGCTTGTGCT 59.366 55.556 0.00 0.00 36.97 4.40
474 475 3.660111 GCCACCGTTTGCTCGCTT 61.660 61.111 0.00 0.00 0.00 4.68
485 486 0.108615 AAATCGAGTCTCAGCCACCG 60.109 55.000 0.00 0.00 0.00 4.94
487 488 1.272781 CGAAATCGAGTCTCAGCCAC 58.727 55.000 0.00 0.00 43.02 5.01
488 489 0.458543 GCGAAATCGAGTCTCAGCCA 60.459 55.000 7.06 0.00 43.02 4.75
491 493 1.475441 GGCGCGAAATCGAGTCTCAG 61.475 60.000 12.10 0.00 40.50 3.35
513 515 2.671396 AGAAAACATATGTCGGTGTCGC 59.329 45.455 9.23 0.00 36.13 5.19
528 530 5.296813 ACATTAAGATGGCACGAGAAAAC 57.703 39.130 0.00 0.00 37.60 2.43
536 538 1.940613 GGGTCGACATTAAGATGGCAC 59.059 52.381 18.91 0.00 41.69 5.01
537 539 1.134220 GGGGTCGACATTAAGATGGCA 60.134 52.381 18.91 0.00 41.69 4.92
566 569 2.313317 AGAGGAACGAAGTACACCACA 58.687 47.619 0.00 0.00 45.00 4.17
576 579 3.492011 GTCAAGCGTAAAAGAGGAACGAA 59.508 43.478 0.00 0.00 38.89 3.85
603 606 4.873817 TCGGTCGTTTCTATCAAGTCAAA 58.126 39.130 0.00 0.00 0.00 2.69
604 607 4.508461 TCGGTCGTTTCTATCAAGTCAA 57.492 40.909 0.00 0.00 0.00 3.18
612 615 6.796705 AAAGTTTGAATCGGTCGTTTCTAT 57.203 33.333 13.12 0.00 0.00 1.98
648 653 4.081761 CGTATGAACTTTAAAGCACAGCG 58.918 43.478 15.24 16.76 0.00 5.18
677 687 0.753262 CCTATACGAAGTGCTGGCCT 59.247 55.000 3.32 0.00 45.73 5.19
952 1347 1.304052 CTGCGGGATTTGTTGGGGA 60.304 57.895 0.00 0.00 0.00 4.81
953 1348 3.005540 GCTGCGGGATTTGTTGGGG 62.006 63.158 0.00 0.00 0.00 4.96
1121 1560 3.363378 CGATCATCAGCGAAATAGCAACC 60.363 47.826 0.00 0.00 40.15 3.77
1242 1718 3.222855 CGGATCTCCCTCAGCGCT 61.223 66.667 2.64 2.64 0.00 5.92
1514 1990 1.859302 ATAGGATCTCCGATCCAGGC 58.141 55.000 21.32 0.00 40.61 4.85
1540 2017 3.055385 AGCTATCTTACAACGAAGGGCAA 60.055 43.478 0.00 0.00 0.00 4.52
1576 2057 7.483307 TGGTATATAACACGTCTAGAAACCAC 58.517 38.462 0.00 0.00 0.00 4.16
1658 2139 7.642071 AAGCAGCATACACTTATTTGTTTTG 57.358 32.000 0.00 0.00 0.00 2.44
1674 2155 5.244626 ACATAACCAGAAGAAAAAGCAGCAT 59.755 36.000 0.00 0.00 0.00 3.79
1689 2170 6.145535 GCAGTTCTTTCAGAAACATAACCAG 58.854 40.000 0.00 0.00 35.75 4.00
1701 2182 4.100529 CGCCAATATTGCAGTTCTTTCAG 58.899 43.478 10.11 0.00 0.00 3.02
1707 2188 4.811555 TGATACGCCAATATTGCAGTTC 57.188 40.909 10.11 11.22 0.00 3.01
1714 2195 8.846943 TGAACAGATAATGATACGCCAATATT 57.153 30.769 0.00 0.00 0.00 1.28
1715 2196 8.314021 TCTGAACAGATAATGATACGCCAATAT 58.686 33.333 0.00 0.00 31.41 1.28
1755 2236 4.215399 CGGTTGAAAGAACAGAAGGCAATA 59.785 41.667 0.00 0.00 0.00 1.90
1780 2261 2.105649 TGGTCAATGTGTAGCTCCAACA 59.894 45.455 0.00 0.00 0.00 3.33
1786 2267 4.142609 CTACCATGGTCAATGTGTAGCT 57.857 45.455 23.76 0.00 35.31 3.32
1788 2269 3.872696 TGCTACCATGGTCAATGTGTAG 58.127 45.455 23.76 11.79 40.00 2.74
1789 2270 3.990959 TGCTACCATGGTCAATGTGTA 57.009 42.857 23.76 0.00 34.11 2.90
1806 2305 1.855295 TTGGCATGATCACCATTGCT 58.145 45.000 16.39 0.00 35.42 3.91
1834 2333 7.464710 GCGTAAGAACTAAGAACTCATGGAATG 60.465 40.741 0.00 0.00 44.36 2.67
1850 2349 2.132762 CGAACACAAGGCGTAAGAACT 58.867 47.619 0.00 0.00 43.02 3.01
1851 2350 2.097056 GTCGAACACAAGGCGTAAGAAC 60.097 50.000 0.00 0.00 43.02 3.01
1852 2351 2.129607 GTCGAACACAAGGCGTAAGAA 58.870 47.619 0.00 0.00 43.02 2.52
1853 2352 1.338973 AGTCGAACACAAGGCGTAAGA 59.661 47.619 0.00 0.00 43.02 2.10
1854 2353 1.779569 AGTCGAACACAAGGCGTAAG 58.220 50.000 0.00 0.00 43.44 2.34
1855 2354 2.129607 GAAGTCGAACACAAGGCGTAA 58.870 47.619 0.00 0.00 0.00 3.18
1856 2355 1.338973 AGAAGTCGAACACAAGGCGTA 59.661 47.619 0.00 0.00 0.00 4.42
1868 2367 3.655276 AGAAAAGGCGTAAGAAGTCGA 57.345 42.857 0.00 0.00 43.02 4.20
1872 2371 4.455124 CGTCAAAGAAAAGGCGTAAGAAG 58.545 43.478 0.00 0.00 43.02 2.85
1897 2396 4.094590 TGAAAACGGTAACAACATTGACGT 59.905 37.500 0.00 0.00 32.79 4.34
1957 2456 8.409358 AAGTTAGAAAATGAGGTAGTTTGCAT 57.591 30.769 0.00 0.00 0.00 3.96
1968 2468 7.630242 TGGGCAATAGAAGTTAGAAAATGAG 57.370 36.000 0.00 0.00 0.00 2.90
2022 2525 4.567159 GCCGTGGAGTTCTACAAATCTTAG 59.433 45.833 0.00 0.00 0.00 2.18
2080 2586 7.832685 TCTTCCTGAATGTGAAGATGATTTGAT 59.167 33.333 0.00 0.00 41.42 2.57
2103 2609 6.560253 ATTCATACGTGAAAGTGCTTTCTT 57.440 33.333 20.88 10.85 46.67 2.52
2105 2611 7.519002 ACTTATTCATACGTGAAAGTGCTTTC 58.481 34.615 15.52 15.52 46.67 2.62
2122 2663 5.924254 CGGGCGTATTCATCTTACTTATTCA 59.076 40.000 0.00 0.00 0.00 2.57
2123 2664 5.924825 ACGGGCGTATTCATCTTACTTATTC 59.075 40.000 0.00 0.00 0.00 1.75
2170 2713 2.704572 AGCAAGTGTTCCACTCTATGC 58.295 47.619 10.17 10.17 44.62 3.14
2173 2716 4.689612 AGAAAGCAAGTGTTCCACTCTA 57.310 40.909 0.00 0.00 44.62 2.43
2178 2721 4.280677 CCCATAAAGAAAGCAAGTGTTCCA 59.719 41.667 0.00 0.00 0.00 3.53
2233 2778 6.263842 CAGCAATGGGATCTACAAATATGTGT 59.736 38.462 3.51 3.51 40.84 3.72
2326 2877 2.203351 GGGCCGAATCCATGGGTC 60.203 66.667 13.02 9.05 0.00 4.46
2345 2899 0.588252 CAGGTCTTTCAGTTGGCGTG 59.412 55.000 0.00 0.00 0.00 5.34
2377 2931 4.939509 GCTCCTGCTATTCACGTAAAAA 57.060 40.909 0.00 0.00 36.03 1.94
2392 2946 3.588336 GCAAAGGCAGAGCTCCTG 58.412 61.111 10.93 9.35 45.67 3.86
2402 2956 7.499232 TCTTTCTTCCTACTATAATGCAAAGGC 59.501 37.037 0.00 0.00 41.68 4.35
2404 2958 9.050601 CCTCTTTCTTCCTACTATAATGCAAAG 57.949 37.037 0.00 0.00 0.00 2.77
2405 2959 8.548877 ACCTCTTTCTTCCTACTATAATGCAAA 58.451 33.333 0.00 0.00 0.00 3.68
2407 2961 7.676683 ACCTCTTTCTTCCTACTATAATGCA 57.323 36.000 0.00 0.00 0.00 3.96
2408 2962 8.639761 TGTACCTCTTTCTTCCTACTATAATGC 58.360 37.037 0.00 0.00 0.00 3.56
2411 2965 9.986157 TTCTGTACCTCTTTCTTCCTACTATAA 57.014 33.333 0.00 0.00 0.00 0.98
2412 2966 9.406113 GTTCTGTACCTCTTTCTTCCTACTATA 57.594 37.037 0.00 0.00 0.00 1.31
2414 2968 6.662663 GGTTCTGTACCTCTTTCTTCCTACTA 59.337 42.308 0.00 0.00 44.10 1.82
2416 2970 5.337410 GGGTTCTGTACCTCTTTCTTCCTAC 60.337 48.000 3.39 0.00 46.86 3.18
2418 2972 3.583526 GGGTTCTGTACCTCTTTCTTCCT 59.416 47.826 3.39 0.00 46.86 3.36
2419 2973 3.326880 TGGGTTCTGTACCTCTTTCTTCC 59.673 47.826 3.39 0.00 46.86 3.46
2420 2974 4.618920 TGGGTTCTGTACCTCTTTCTTC 57.381 45.455 3.39 0.00 46.86 2.87
2421 2975 4.597507 TGATGGGTTCTGTACCTCTTTCTT 59.402 41.667 3.39 0.00 46.86 2.52
2423 2977 4.508662 CTGATGGGTTCTGTACCTCTTTC 58.491 47.826 3.39 0.00 46.86 2.62
2424 2978 3.264450 CCTGATGGGTTCTGTACCTCTTT 59.736 47.826 3.39 0.00 46.86 2.52
2425 2979 2.840651 CCTGATGGGTTCTGTACCTCTT 59.159 50.000 3.39 0.00 46.86 2.85
2427 2981 2.990066 CCTGATGGGTTCTGTACCTC 57.010 55.000 3.39 0.00 46.86 3.85
2439 2993 0.833287 ACACGGATCTTCCCTGATGG 59.167 55.000 0.00 0.00 31.13 3.51
2440 2994 2.093500 TGAACACGGATCTTCCCTGATG 60.093 50.000 0.00 0.00 31.13 3.07
2441 2995 2.187958 TGAACACGGATCTTCCCTGAT 58.812 47.619 0.00 0.00 31.13 2.90
2443 2997 2.472695 TTGAACACGGATCTTCCCTG 57.527 50.000 0.00 0.00 31.13 4.45
2444 2998 2.571653 TGATTGAACACGGATCTTCCCT 59.428 45.455 0.00 0.00 31.13 4.20
2445 2999 2.678336 GTGATTGAACACGGATCTTCCC 59.322 50.000 0.00 0.00 31.13 3.97
2446 3000 3.600388 AGTGATTGAACACGGATCTTCC 58.400 45.455 0.00 0.00 44.35 3.46
2448 3002 4.271696 TGAGTGATTGAACACGGATCTT 57.728 40.909 0.00 0.00 44.35 2.40
2449 3003 3.961480 TGAGTGATTGAACACGGATCT 57.039 42.857 0.00 0.00 44.35 2.75
2450 3004 5.109210 TGTATGAGTGATTGAACACGGATC 58.891 41.667 0.00 0.00 44.35 3.36
2451 3005 5.084818 TGTATGAGTGATTGAACACGGAT 57.915 39.130 0.00 0.00 44.35 4.18
2453 3007 4.869861 TGATGTATGAGTGATTGAACACGG 59.130 41.667 0.00 0.00 44.35 4.94
2454 3008 5.578336 ACTGATGTATGAGTGATTGAACACG 59.422 40.000 0.00 0.00 44.35 4.49
2456 3010 5.876460 CCACTGATGTATGAGTGATTGAACA 59.124 40.000 12.16 0.00 43.42 3.18
2457 3011 5.295292 CCCACTGATGTATGAGTGATTGAAC 59.705 44.000 12.16 0.00 43.42 3.18
2465 3504 3.121929 ACCTCCCACTGATGTATGAGT 57.878 47.619 0.00 0.00 0.00 3.41
2466 3505 3.452264 TGAACCTCCCACTGATGTATGAG 59.548 47.826 0.00 0.00 0.00 2.90
2470 3509 3.843619 TGATTGAACCTCCCACTGATGTA 59.156 43.478 0.00 0.00 0.00 2.29
2477 3516 2.859165 TGAGTGATTGAACCTCCCAC 57.141 50.000 0.00 0.00 0.00 4.61
2478 3517 4.104086 AGTATGAGTGATTGAACCTCCCA 58.896 43.478 0.00 0.00 0.00 4.37
2479 3518 4.762289 AGTATGAGTGATTGAACCTCCC 57.238 45.455 0.00 0.00 0.00 4.30
2480 3519 5.067413 TCGTAGTATGAGTGATTGAACCTCC 59.933 44.000 0.00 0.00 0.00 4.30
2481 3520 6.132791 TCGTAGTATGAGTGATTGAACCTC 57.867 41.667 0.00 0.00 0.00 3.85
2483 3522 5.175856 GCATCGTAGTATGAGTGATTGAACC 59.824 44.000 0.00 0.00 0.00 3.62
2484 3523 5.748630 TGCATCGTAGTATGAGTGATTGAAC 59.251 40.000 0.00 0.00 0.00 3.18
2487 3526 5.922544 TCATGCATCGTAGTATGAGTGATTG 59.077 40.000 0.00 0.00 36.02 2.67
2488 3527 6.089249 TCATGCATCGTAGTATGAGTGATT 57.911 37.500 0.00 0.00 36.02 2.57
2489 3528 5.712152 TCATGCATCGTAGTATGAGTGAT 57.288 39.130 0.00 0.00 36.02 3.06
2490 3529 5.514274 TTCATGCATCGTAGTATGAGTGA 57.486 39.130 0.00 0.00 40.77 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.