Multiple sequence alignment - TraesCS6B01G051900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G051900 chr6B 100.000 3801 0 0 1 3801 31017501 31013701 0.000000e+00 7020.0
1 TraesCS6B01G051900 chr6B 91.961 2065 115 22 777 2802 31512836 31514888 0.000000e+00 2846.0
2 TraesCS6B01G051900 chr6B 85.172 870 92 26 2149 3012 31570227 31571065 0.000000e+00 857.0
3 TraesCS6B01G051900 chr6B 82.169 830 133 10 1043 1867 160899033 160899852 0.000000e+00 699.0
4 TraesCS6B01G051900 chr6B 86.783 401 49 2 1528 1925 31521713 31522112 9.690000e-121 444.0
5 TraesCS6B01G051900 chr6B 84.758 433 40 11 3158 3565 40518180 40518611 9.830000e-111 411.0
6 TraesCS6B01G051900 chrUn 90.620 1290 78 15 778 2036 95187829 95189106 0.000000e+00 1672.0
7 TraesCS6B01G051900 chrUn 87.955 880 71 19 2149 3025 95189107 95189954 0.000000e+00 1005.0
8 TraesCS6B01G051900 chr3D 91.721 773 50 6 1 771 123621431 123622191 0.000000e+00 1061.0
9 TraesCS6B01G051900 chr3D 89.345 779 42 12 1 771 541199807 541200552 0.000000e+00 941.0
10 TraesCS6B01G051900 chr3D 88.330 437 30 9 1 435 186622688 186623105 4.380000e-139 505.0
11 TraesCS6B01G051900 chr3D 91.150 339 19 4 433 770 186623320 186623648 2.080000e-122 449.0
12 TraesCS6B01G051900 chr3D 88.393 112 13 0 2036 2147 2403159 2403048 6.620000e-28 135.0
13 TraesCS6B01G051900 chr3D 87.395 119 14 1 2036 2154 613777594 613777477 6.620000e-28 135.0
14 TraesCS6B01G051900 chr3D 85.385 130 14 5 2029 2154 606952240 606952368 3.080000e-26 130.0
15 TraesCS6B01G051900 chr5A 92.759 580 30 10 197 771 104146415 104146987 0.000000e+00 828.0
16 TraesCS6B01G051900 chr5A 84.677 372 38 9 3034 3398 653053483 653053124 1.680000e-93 353.0
17 TraesCS6B01G051900 chr5A 93.289 149 8 2 3424 3571 653052896 653052749 6.390000e-53 219.0
18 TraesCS6B01G051900 chr7D 90.777 618 44 10 159 771 72121064 72121673 0.000000e+00 813.0
19 TraesCS6B01G051900 chr7D 86.423 383 37 7 3031 3398 51835813 51836195 4.570000e-109 405.0
20 TraesCS6B01G051900 chr7D 91.416 233 15 4 3571 3801 198051014 198050785 7.930000e-82 315.0
21 TraesCS6B01G051900 chr7D 82.240 366 54 9 3035 3398 29964536 29964892 4.770000e-79 305.0
22 TraesCS6B01G051900 chr7D 93.038 158 8 2 3572 3728 198032764 198032609 1.060000e-55 228.0
23 TraesCS6B01G051900 chr7D 82.456 114 18 2 22 134 27179606 27179718 8.690000e-17 99.0
24 TraesCS6B01G051900 chr6D 83.855 830 120 9 1043 1868 84647919 84648738 0.000000e+00 778.0
25 TraesCS6B01G051900 chr6D 83.472 841 122 10 1043 1876 85626648 85625818 0.000000e+00 767.0
26 TraesCS6B01G051900 chr4B 97.309 446 10 1 1 444 45786789 45786344 0.000000e+00 756.0
27 TraesCS6B01G051900 chr4B 92.308 338 13 6 440 772 45786001 45785672 5.750000e-128 468.0
28 TraesCS6B01G051900 chr4B 88.506 261 21 4 512 771 45787820 45788072 1.330000e-79 307.0
29 TraesCS6B01G051900 chr6A 82.288 813 129 9 1059 1867 101858323 101859124 0.000000e+00 689.0
30 TraesCS6B01G051900 chr6A 89.106 358 36 3 1 357 4920736 4921091 3.480000e-120 442.0
31 TraesCS6B01G051900 chr6A 91.860 172 9 3 359 529 4921292 4921459 6.350000e-58 235.0
32 TraesCS6B01G051900 chr6A 97.500 40 1 0 533 572 4921492 4921531 6.810000e-08 69.4
33 TraesCS6B01G051900 chr6A 91.489 47 4 0 1182 1228 11157592 11157638 8.810000e-07 65.8
34 TraesCS6B01G051900 chr6A 91.304 46 4 0 1182 1227 10371913 10371868 3.170000e-06 63.9
35 TraesCS6B01G051900 chr2B 85.790 563 55 11 3034 3571 334867817 334867255 1.180000e-159 573.0
36 TraesCS6B01G051900 chr2B 75.988 329 70 6 1184 1506 28349395 28349720 1.090000e-35 161.0
37 TraesCS6B01G051900 chr2B 72.000 325 75 13 1203 1519 15744106 15744422 8.750000e-12 82.4
38 TraesCS6B01G051900 chr2B 71.865 327 72 16 1203 1519 15681855 15682171 4.070000e-10 76.8
39 TraesCS6B01G051900 chr5D 85.340 573 49 9 3034 3571 329608071 329607499 9.220000e-156 560.0
40 TraesCS6B01G051900 chr5D 88.787 437 28 9 1 435 362935515 362935098 2.020000e-142 516.0
41 TraesCS6B01G051900 chr5D 87.798 336 23 5 436 770 362934880 362934562 9.970000e-101 377.0
42 TraesCS6B01G051900 chr5D 81.217 378 35 17 3028 3398 500609294 500609642 4.840000e-69 272.0
43 TraesCS6B01G051900 chr5D 91.724 145 12 0 3424 3568 500609880 500610024 6.440000e-48 202.0
44 TraesCS6B01G051900 chr5D 88.430 121 14 0 2027 2147 134475498 134475618 3.060000e-31 147.0
45 TraesCS6B01G051900 chr7A 86.267 517 49 10 3077 3571 124222511 124221995 3.340000e-150 542.0
46 TraesCS6B01G051900 chr1D 88.813 438 27 6 1 435 335406495 335406913 5.630000e-143 518.0
47 TraesCS6B01G051900 chr1D 85.752 379 39 8 3034 3398 493973918 493973541 1.660000e-103 387.0
48 TraesCS6B01G051900 chr1D 86.471 340 21 7 433 771 335407128 335407443 2.170000e-92 350.0
49 TraesCS6B01G051900 chr1D 88.123 261 19 6 512 771 335405467 335405218 2.220000e-77 300.0
50 TraesCS6B01G051900 chr3A 86.382 492 41 10 3024 3492 727490560 727491048 7.280000e-142 514.0
51 TraesCS6B01G051900 chr2D 94.372 231 12 1 3572 3801 315049273 315049503 1.680000e-93 353.0
52 TraesCS6B01G051900 chr2D 94.839 155 7 1 3576 3729 315062294 315062448 1.360000e-59 241.0
53 TraesCS6B01G051900 chr2D 86.957 115 15 0 2033 2147 122863401 122863515 3.080000e-26 130.0
54 TraesCS6B01G051900 chr1A 82.703 370 45 14 3035 3398 568068571 568068215 1.030000e-80 311.0
55 TraesCS6B01G051900 chr1A 89.076 119 10 3 2036 2153 184055033 184054917 1.100000e-30 145.0
56 TraesCS6B01G051900 chr4D 89.565 115 12 0 2033 2147 502404749 502404863 3.060000e-31 147.0
57 TraesCS6B01G051900 chr4D 83.951 81 11 2 39 118 498629629 498629550 4.070000e-10 76.8
58 TraesCS6B01G051900 chr1B 87.931 116 12 2 2033 2147 568973230 568973344 6.620000e-28 135.0
59 TraesCS6B01G051900 chr2A 84.375 96 15 0 39 134 348120465 348120560 1.120000e-15 95.3
60 TraesCS6B01G051900 chr4A 84.314 102 9 5 3679 3779 494547803 494547708 4.040000e-15 93.5
61 TraesCS6B01G051900 chr3B 80.000 115 23 0 23 137 73697832 73697718 6.770000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G051900 chr6B 31013701 31017501 3800 True 7020.0 7020 100.0000 1 3801 1 chr6B.!!$R1 3800
1 TraesCS6B01G051900 chr6B 31512836 31514888 2052 False 2846.0 2846 91.9610 777 2802 1 chr6B.!!$F1 2025
2 TraesCS6B01G051900 chr6B 31570227 31571065 838 False 857.0 857 85.1720 2149 3012 1 chr6B.!!$F3 863
3 TraesCS6B01G051900 chr6B 160899033 160899852 819 False 699.0 699 82.1690 1043 1867 1 chr6B.!!$F5 824
4 TraesCS6B01G051900 chrUn 95187829 95189954 2125 False 1338.5 1672 89.2875 778 3025 2 chrUn.!!$F1 2247
5 TraesCS6B01G051900 chr3D 123621431 123622191 760 False 1061.0 1061 91.7210 1 771 1 chr3D.!!$F1 770
6 TraesCS6B01G051900 chr3D 541199807 541200552 745 False 941.0 941 89.3450 1 771 1 chr3D.!!$F2 770
7 TraesCS6B01G051900 chr3D 186622688 186623648 960 False 477.0 505 89.7400 1 770 2 chr3D.!!$F4 769
8 TraesCS6B01G051900 chr5A 104146415 104146987 572 False 828.0 828 92.7590 197 771 1 chr5A.!!$F1 574
9 TraesCS6B01G051900 chr5A 653052749 653053483 734 True 286.0 353 88.9830 3034 3571 2 chr5A.!!$R1 537
10 TraesCS6B01G051900 chr7D 72121064 72121673 609 False 813.0 813 90.7770 159 771 1 chr7D.!!$F4 612
11 TraesCS6B01G051900 chr6D 84647919 84648738 819 False 778.0 778 83.8550 1043 1868 1 chr6D.!!$F1 825
12 TraesCS6B01G051900 chr6D 85625818 85626648 830 True 767.0 767 83.4720 1043 1876 1 chr6D.!!$R1 833
13 TraesCS6B01G051900 chr4B 45785672 45786789 1117 True 612.0 756 94.8085 1 772 2 chr4B.!!$R1 771
14 TraesCS6B01G051900 chr6A 101858323 101859124 801 False 689.0 689 82.2880 1059 1867 1 chr6A.!!$F2 808
15 TraesCS6B01G051900 chr6A 4920736 4921531 795 False 248.8 442 92.8220 1 572 3 chr6A.!!$F3 571
16 TraesCS6B01G051900 chr2B 334867255 334867817 562 True 573.0 573 85.7900 3034 3571 1 chr2B.!!$R1 537
17 TraesCS6B01G051900 chr5D 329607499 329608071 572 True 560.0 560 85.3400 3034 3571 1 chr5D.!!$R1 537
18 TraesCS6B01G051900 chr5D 362934562 362935515 953 True 446.5 516 88.2925 1 770 2 chr5D.!!$R2 769
19 TraesCS6B01G051900 chr5D 500609294 500610024 730 False 237.0 272 86.4705 3028 3568 2 chr5D.!!$F2 540
20 TraesCS6B01G051900 chr7A 124221995 124222511 516 True 542.0 542 86.2670 3077 3571 1 chr7A.!!$R1 494
21 TraesCS6B01G051900 chr1D 335406495 335407443 948 False 434.0 518 87.6420 1 771 2 chr1D.!!$F1 770

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
826 1641 0.531657 TTGTTGCATGGCACTATGGC 59.468 50.0 0.00 0.0 44.03 4.40 F
2147 3009 0.259647 TAATTCCGGACGGAGGGAGA 59.740 55.0 13.64 0.0 46.06 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2599 3466 0.105862 TCCCGGGACATATCCTTCGT 60.106 55.0 22.63 0.0 45.46 3.85 R
3621 4732 0.178068 ACATGGGCGTAGTGGTGATC 59.822 55.0 0.00 0.0 0.00 2.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
117 120 0.608035 GGTCCGATTTGCCAAGTCCA 60.608 55.000 0.00 0.00 0.00 4.02
223 230 8.741101 TTGTTTGAATCCTGAATTACGATTTG 57.259 30.769 0.00 0.00 0.00 2.32
491 1262 1.254026 CATGGGCTGGGCTATCAATG 58.746 55.000 0.00 0.00 0.00 2.82
694 1507 4.603535 GCAAGTGTGGGCCAGGGT 62.604 66.667 6.40 0.00 0.00 4.34
787 1600 4.094887 CAGATTCACCTTATCCAAACCACG 59.905 45.833 0.00 0.00 0.00 4.94
819 1634 3.510753 ACTGACATAATTGTTGCATGGCA 59.489 39.130 0.00 0.00 35.33 4.92
820 1635 3.847542 TGACATAATTGTTGCATGGCAC 58.152 40.909 0.00 0.00 38.71 5.01
821 1636 3.510753 TGACATAATTGTTGCATGGCACT 59.489 39.130 0.00 0.00 38.71 4.40
822 1637 4.704057 TGACATAATTGTTGCATGGCACTA 59.296 37.500 0.00 0.00 38.71 2.74
823 1638 5.360429 TGACATAATTGTTGCATGGCACTAT 59.640 36.000 0.00 0.00 38.71 2.12
824 1639 5.593968 ACATAATTGTTGCATGGCACTATG 58.406 37.500 0.00 1.10 38.71 2.23
825 1640 3.530265 AATTGTTGCATGGCACTATGG 57.470 42.857 0.00 0.00 38.71 2.74
826 1641 0.531657 TTGTTGCATGGCACTATGGC 59.468 50.000 0.00 0.00 44.03 4.40
881 1696 1.133790 GTCAAATTGCCTGGCTGCTAG 59.866 52.381 21.03 5.98 0.00 3.42
927 1748 6.741109 TCGTACGCATCTTCCTGAATTATTA 58.259 36.000 11.24 0.00 0.00 0.98
980 1819 2.598565 TCTCCACCAGCGAGCTATAAT 58.401 47.619 0.00 0.00 0.00 1.28
981 1820 2.965831 TCTCCACCAGCGAGCTATAATT 59.034 45.455 0.00 0.00 0.00 1.40
982 1821 3.005897 TCTCCACCAGCGAGCTATAATTC 59.994 47.826 0.00 0.00 0.00 2.17
1026 1872 2.988684 TTTGTCACCATGGCGGCC 60.989 61.111 13.04 13.32 39.03 6.13
1540 2390 3.532155 GTCGCGAGGAGGAGGCAT 61.532 66.667 10.24 0.00 0.00 4.40
1542 2392 3.842923 CGCGAGGAGGAGGCATGT 61.843 66.667 0.00 0.00 0.00 3.21
1890 2752 0.545646 AGCAAGAAGATGAGGAGGCC 59.454 55.000 0.00 0.00 0.00 5.19
1941 2803 4.268797 ACACGAGTACAGTCTCACTAGA 57.731 45.455 0.00 0.00 34.46 2.43
1956 2818 3.963374 TCACTAGACAGCATATCAAGGCT 59.037 43.478 0.00 0.00 45.36 4.58
1977 2839 5.816777 GGCTATTTTGGTGGTACGTAATACA 59.183 40.000 0.00 0.00 35.23 2.29
2041 2903 9.337714 TCCTAATGTTCATCATATATTCCCTCA 57.662 33.333 0.00 0.00 35.48 3.86
2045 2907 7.862274 TGTTCATCATATATTCCCTCAGTCT 57.138 36.000 0.00 0.00 0.00 3.24
2059 2921 4.223923 CCCTCAGTCTGGAAATACTTGTCT 59.776 45.833 0.00 0.00 0.00 3.41
2060 2922 5.422331 CCCTCAGTCTGGAAATACTTGTCTA 59.578 44.000 0.00 0.00 0.00 2.59
2061 2923 6.334202 CCTCAGTCTGGAAATACTTGTCTAC 58.666 44.000 0.00 0.00 0.00 2.59
2071 2933 8.664798 TGGAAATACTTGTCTACGAAATGAATG 58.335 33.333 0.00 0.00 0.00 2.67
2135 2997 5.411361 TCCATTTGTGAGACAAGTAATTCCG 59.589 40.000 0.00 0.00 39.53 4.30
2139 3001 2.921754 GTGAGACAAGTAATTCCGGACG 59.078 50.000 1.83 0.00 0.00 4.79
2140 3002 2.094390 TGAGACAAGTAATTCCGGACGG 60.094 50.000 1.83 3.96 0.00 4.79
2144 3006 0.828677 AAGTAATTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
2147 3009 0.259647 TAATTCCGGACGGAGGGAGA 59.740 55.000 13.64 0.00 46.06 3.71
2163 3028 6.095580 CGGAGGGAGATAATTAGATCGAATCA 59.904 42.308 1.22 0.00 0.00 2.57
2587 3454 1.531748 GGATTTCGGGATCCTGCCA 59.468 57.895 16.48 4.81 41.96 4.92
2599 3466 2.045045 CTGCCATTTGGAGCCGGA 60.045 61.111 5.05 0.00 37.39 5.14
2651 3518 0.387929 GGCGTCCGTGGAGATTATGA 59.612 55.000 0.00 0.00 0.00 2.15
2677 3544 3.578688 CAACCTTGCCTATTGCTTTGAC 58.421 45.455 0.00 0.00 42.00 3.18
2725 3592 6.100279 AGCATAAGGACCTTGATATGACAGAA 59.900 38.462 17.47 0.00 0.00 3.02
2802 3669 8.581057 ACACGAGATGTTAGTCATGAATAATC 57.419 34.615 17.73 12.40 38.98 1.75
2804 3671 9.254133 CACGAGATGTTAGTCATGAATAATCTT 57.746 33.333 17.73 10.07 36.83 2.40
2805 3672 9.823647 ACGAGATGTTAGTCATGAATAATCTTT 57.176 29.630 17.73 7.15 36.83 2.52
2817 3684 9.770097 TCATGAATAATCTTTGTCATAGTCTCC 57.230 33.333 0.00 0.00 0.00 3.71
2818 3685 9.551734 CATGAATAATCTTTGTCATAGTCTCCA 57.448 33.333 0.00 0.00 0.00 3.86
2820 3687 9.551734 TGAATAATCTTTGTCATAGTCTCCATG 57.448 33.333 0.00 0.00 0.00 3.66
2821 3688 9.553064 GAATAATCTTTGTCATAGTCTCCATGT 57.447 33.333 0.00 0.00 0.00 3.21
2823 3690 9.988815 ATAATCTTTGTCATAGTCTCCATGTAC 57.011 33.333 0.00 0.00 0.00 2.90
2824 3691 7.667575 ATCTTTGTCATAGTCTCCATGTACT 57.332 36.000 0.00 0.00 0.00 2.73
2825 3692 7.482169 TCTTTGTCATAGTCTCCATGTACTT 57.518 36.000 0.00 0.00 0.00 2.24
2826 3693 7.907389 TCTTTGTCATAGTCTCCATGTACTTT 58.093 34.615 0.00 0.00 0.00 2.66
2827 3694 8.375506 TCTTTGTCATAGTCTCCATGTACTTTT 58.624 33.333 0.00 0.00 0.00 2.27
2828 3695 8.918202 TTTGTCATAGTCTCCATGTACTTTTT 57.082 30.769 0.00 0.00 0.00 1.94
2853 3722 4.036262 TGGCGAATAATAGTTTCCATGCAC 59.964 41.667 0.00 0.00 0.00 4.57
2867 3736 5.031066 TCCATGCACTTGTAAGGGTATAC 57.969 43.478 0.00 0.00 32.75 1.47
2868 3737 4.719773 TCCATGCACTTGTAAGGGTATACT 59.280 41.667 2.25 0.00 32.75 2.12
2945 3821 1.812571 GCAGGTGTCACAAACTATGGG 59.187 52.381 5.12 0.00 0.00 4.00
2946 3822 1.812571 CAGGTGTCACAAACTATGGGC 59.187 52.381 5.12 0.00 30.09 5.36
2959 3835 5.763876 AACTATGGGCTTTCTCTAGTGTT 57.236 39.130 0.00 0.00 0.00 3.32
2961 3837 2.185004 TGGGCTTTCTCTAGTGTTGC 57.815 50.000 0.00 0.00 0.00 4.17
2963 3839 1.454201 GGCTTTCTCTAGTGTTGCCC 58.546 55.000 11.48 0.00 33.45 5.36
2966 3842 3.526534 GCTTTCTCTAGTGTTGCCCTAG 58.473 50.000 0.00 0.00 34.47 3.02
2976 3852 3.889538 AGTGTTGCCCTAGGAAGTTTTTC 59.110 43.478 11.48 0.00 0.00 2.29
3000 3876 3.499737 CGCTTTCGAAGGCGCCAT 61.500 61.111 35.92 19.26 44.64 4.40
3001 3877 2.100991 GCTTTCGAAGGCGCCATG 59.899 61.111 31.54 17.89 37.46 3.66
3025 3901 2.442236 ACATGGCCAACCTCTTATGG 57.558 50.000 10.96 0.00 39.80 2.74
3032 3908 3.303351 CCAACCTCTTATGGCCAGATT 57.697 47.619 13.05 0.00 0.00 2.40
3065 3941 7.844779 TCTTAAGAAGTTGATCCCCACTACTAT 59.155 37.037 1.68 0.00 0.00 2.12
3131 4007 2.151202 TCAGCGTTCAGTTCCCAATTC 58.849 47.619 0.00 0.00 0.00 2.17
3155 4031 0.588252 CGTCCACCTCAGCAAAGTTG 59.412 55.000 0.00 0.00 0.00 3.16
3271 4166 1.454479 CTCAATTCCCCGCATGGCT 60.454 57.895 0.00 0.00 0.00 4.75
3315 4210 6.946340 TCTCTTAATTGTAGGCAACAGATCA 58.054 36.000 0.00 0.00 39.87 2.92
3326 4221 3.308323 GGCAACAGATCATCTTCGTCTTC 59.692 47.826 0.00 0.00 0.00 2.87
3359 4254 6.040391 CCACCAAAAACTGATGGAAGAGTAAA 59.960 38.462 0.00 0.00 39.12 2.01
3360 4255 6.918022 CACCAAAAACTGATGGAAGAGTAAAC 59.082 38.462 0.00 0.00 39.12 2.01
3364 4259 7.745620 AAAACTGATGGAAGAGTAAACGATT 57.254 32.000 0.00 0.00 0.00 3.34
3376 4271 5.892119 AGAGTAAACGATTGACCTGATCCTA 59.108 40.000 0.00 0.00 0.00 2.94
3410 4380 0.690411 ATCTCCTAGCTGCTGCAGGT 60.690 55.000 33.22 33.22 44.66 4.00
3568 4679 7.161404 TGGATCCGTTAATTATCTTCATCCTG 58.839 38.462 7.39 0.00 0.00 3.86
3571 4682 6.591935 TCCGTTAATTATCTTCATCCTGCTT 58.408 36.000 0.00 0.00 0.00 3.91
3572 4683 6.483307 TCCGTTAATTATCTTCATCCTGCTTG 59.517 38.462 0.00 0.00 0.00 4.01
3573 4684 6.260936 CCGTTAATTATCTTCATCCTGCTTGT 59.739 38.462 0.00 0.00 0.00 3.16
3574 4685 7.201732 CCGTTAATTATCTTCATCCTGCTTGTT 60.202 37.037 0.00 0.00 0.00 2.83
3575 4686 8.826710 CGTTAATTATCTTCATCCTGCTTGTTA 58.173 33.333 0.00 0.00 0.00 2.41
3577 4688 7.814264 AATTATCTTCATCCTGCTTGTTAGG 57.186 36.000 0.00 0.00 36.63 2.69
3578 4689 2.991250 TCTTCATCCTGCTTGTTAGGC 58.009 47.619 0.00 0.00 35.23 3.93
3579 4690 1.667724 CTTCATCCTGCTTGTTAGGCG 59.332 52.381 0.00 0.00 35.23 5.52
3580 4691 0.901827 TCATCCTGCTTGTTAGGCGA 59.098 50.000 0.00 0.00 35.23 5.54
3581 4692 1.486310 TCATCCTGCTTGTTAGGCGAT 59.514 47.619 0.00 0.00 35.23 4.58
3582 4693 2.698274 TCATCCTGCTTGTTAGGCGATA 59.302 45.455 0.00 0.00 35.23 2.92
3583 4694 2.890808 TCCTGCTTGTTAGGCGATAG 57.109 50.000 0.00 0.00 35.23 2.08
3584 4695 2.384828 TCCTGCTTGTTAGGCGATAGA 58.615 47.619 0.00 0.00 35.23 1.98
3594 4705 2.979130 GGCGATAGACTTGGTCAGC 58.021 57.895 0.52 0.99 44.90 4.26
3595 4706 0.461961 GGCGATAGACTTGGTCAGCT 59.538 55.000 0.52 0.00 44.90 4.24
3596 4707 1.537135 GGCGATAGACTTGGTCAGCTC 60.537 57.143 0.52 0.00 44.90 4.09
3597 4708 1.135139 GCGATAGACTTGGTCAGCTCA 59.865 52.381 0.52 0.00 34.60 4.26
3598 4709 2.797792 GCGATAGACTTGGTCAGCTCAG 60.798 54.545 0.52 0.00 34.60 3.35
3599 4710 2.223688 CGATAGACTTGGTCAGCTCAGG 60.224 54.545 0.52 0.00 34.60 3.86
3600 4711 2.604912 TAGACTTGGTCAGCTCAGGA 57.395 50.000 0.52 0.00 34.60 3.86
3601 4712 1.265236 AGACTTGGTCAGCTCAGGAG 58.735 55.000 0.52 0.00 34.60 3.69
3623 4734 4.457496 CACGCTCCTGCCCACGAT 62.457 66.667 0.00 0.00 35.36 3.73
3624 4735 4.148825 ACGCTCCTGCCCACGATC 62.149 66.667 0.00 0.00 35.36 3.69
3625 4736 4.147449 CGCTCCTGCCCACGATCA 62.147 66.667 0.00 0.00 35.36 2.92
3626 4737 2.512515 GCTCCTGCCCACGATCAC 60.513 66.667 0.00 0.00 0.00 3.06
3627 4738 2.187946 CTCCTGCCCACGATCACC 59.812 66.667 0.00 0.00 0.00 4.02
3628 4739 2.606213 TCCTGCCCACGATCACCA 60.606 61.111 0.00 0.00 0.00 4.17
3629 4740 2.436646 CCTGCCCACGATCACCAC 60.437 66.667 0.00 0.00 0.00 4.16
3630 4741 2.665000 CTGCCCACGATCACCACT 59.335 61.111 0.00 0.00 0.00 4.00
3631 4742 1.613317 CCTGCCCACGATCACCACTA 61.613 60.000 0.00 0.00 0.00 2.74
3632 4743 0.460284 CTGCCCACGATCACCACTAC 60.460 60.000 0.00 0.00 0.00 2.73
3633 4744 1.518572 GCCCACGATCACCACTACG 60.519 63.158 0.00 0.00 0.00 3.51
3634 4745 1.518572 CCCACGATCACCACTACGC 60.519 63.158 0.00 0.00 0.00 4.42
3635 4746 1.518572 CCACGATCACCACTACGCC 60.519 63.158 0.00 0.00 0.00 5.68
3636 4747 1.518572 CACGATCACCACTACGCCC 60.519 63.158 0.00 0.00 0.00 6.13
3637 4748 1.980232 ACGATCACCACTACGCCCA 60.980 57.895 0.00 0.00 0.00 5.36
3638 4749 1.327690 ACGATCACCACTACGCCCAT 61.328 55.000 0.00 0.00 0.00 4.00
3639 4750 0.875908 CGATCACCACTACGCCCATG 60.876 60.000 0.00 0.00 0.00 3.66
3640 4751 0.178068 GATCACCACTACGCCCATGT 59.822 55.000 0.00 0.00 0.00 3.21
3641 4752 0.618458 ATCACCACTACGCCCATGTT 59.382 50.000 0.00 0.00 0.00 2.71
3642 4753 0.398696 TCACCACTACGCCCATGTTT 59.601 50.000 0.00 0.00 0.00 2.83
3643 4754 0.521291 CACCACTACGCCCATGTTTG 59.479 55.000 0.00 0.00 0.00 2.93
3644 4755 0.608035 ACCACTACGCCCATGTTTGG 60.608 55.000 0.00 0.00 43.23 3.28
3645 4756 0.322098 CCACTACGCCCATGTTTGGA 60.322 55.000 0.00 0.00 46.92 3.53
3646 4757 1.529226 CACTACGCCCATGTTTGGAA 58.471 50.000 0.00 0.00 46.92 3.53
3647 4758 1.199097 CACTACGCCCATGTTTGGAAC 59.801 52.381 0.00 0.00 46.92 3.62
3648 4759 0.808755 CTACGCCCATGTTTGGAACC 59.191 55.000 0.00 0.00 46.92 3.62
3649 4760 0.956410 TACGCCCATGTTTGGAACCG 60.956 55.000 0.00 0.00 46.92 4.44
3650 4761 2.969827 GCCCATGTTTGGAACCGG 59.030 61.111 0.00 0.00 46.92 5.28
3651 4762 2.969827 CCCATGTTTGGAACCGGC 59.030 61.111 0.00 0.00 46.92 6.13
3652 4763 1.606313 CCCATGTTTGGAACCGGCT 60.606 57.895 0.00 0.00 46.92 5.52
3653 4764 0.322997 CCCATGTTTGGAACCGGCTA 60.323 55.000 0.00 0.00 46.92 3.93
3654 4765 0.808755 CCATGTTTGGAACCGGCTAC 59.191 55.000 0.00 0.00 46.92 3.58
3655 4766 0.446222 CATGTTTGGAACCGGCTACG 59.554 55.000 0.00 0.00 40.55 3.51
3669 4780 1.905449 GCTACGGCCGCTATATGTAC 58.095 55.000 28.58 0.18 0.00 2.90
3670 4781 1.468736 GCTACGGCCGCTATATGTACC 60.469 57.143 28.58 0.00 0.00 3.34
3671 4782 1.133790 CTACGGCCGCTATATGTACCC 59.866 57.143 28.58 0.00 0.00 3.69
3672 4783 1.217244 CGGCCGCTATATGTACCCC 59.783 63.158 14.67 0.00 0.00 4.95
3673 4784 1.255667 CGGCCGCTATATGTACCCCT 61.256 60.000 14.67 0.00 0.00 4.79
3674 4785 0.535797 GGCCGCTATATGTACCCCTC 59.464 60.000 0.00 0.00 0.00 4.30
3675 4786 1.558233 GCCGCTATATGTACCCCTCT 58.442 55.000 0.00 0.00 0.00 3.69
3676 4787 1.477295 GCCGCTATATGTACCCCTCTC 59.523 57.143 0.00 0.00 0.00 3.20
3677 4788 2.884720 GCCGCTATATGTACCCCTCTCT 60.885 54.545 0.00 0.00 0.00 3.10
3678 4789 3.018149 CCGCTATATGTACCCCTCTCTC 58.982 54.545 0.00 0.00 0.00 3.20
3679 4790 3.308545 CCGCTATATGTACCCCTCTCTCT 60.309 52.174 0.00 0.00 0.00 3.10
3680 4791 3.942748 CGCTATATGTACCCCTCTCTCTC 59.057 52.174 0.00 0.00 0.00 3.20
3681 4792 4.323945 CGCTATATGTACCCCTCTCTCTCT 60.324 50.000 0.00 0.00 0.00 3.10
3682 4793 4.947388 GCTATATGTACCCCTCTCTCTCTG 59.053 50.000 0.00 0.00 0.00 3.35
3683 4794 5.515886 GCTATATGTACCCCTCTCTCTCTGT 60.516 48.000 0.00 0.00 0.00 3.41
3684 4795 6.296547 GCTATATGTACCCCTCTCTCTCTGTA 60.297 46.154 0.00 0.00 0.00 2.74
3685 4796 6.728366 ATATGTACCCCTCTCTCTCTGTAT 57.272 41.667 0.00 0.00 0.00 2.29
3686 4797 4.440826 TGTACCCCTCTCTCTCTGTATC 57.559 50.000 0.00 0.00 0.00 2.24
3687 4798 4.048600 TGTACCCCTCTCTCTCTGTATCT 58.951 47.826 0.00 0.00 0.00 1.98
3688 4799 3.876309 ACCCCTCTCTCTCTGTATCTC 57.124 52.381 0.00 0.00 0.00 2.75
3689 4800 3.127250 ACCCCTCTCTCTCTGTATCTCA 58.873 50.000 0.00 0.00 0.00 3.27
3690 4801 3.138283 ACCCCTCTCTCTCTGTATCTCAG 59.862 52.174 0.00 0.00 44.85 3.35
3702 4813 6.475596 TCTGTATCTCAGATCAAGCAATGA 57.524 37.500 0.00 0.00 46.77 2.57
3703 4814 6.514063 TCTGTATCTCAGATCAAGCAATGAG 58.486 40.000 0.00 0.00 46.77 2.90
3706 4817 4.813750 TCTCAGATCAAGCAATGAGACA 57.186 40.909 6.11 0.00 42.36 3.41
3707 4818 4.502016 TCTCAGATCAAGCAATGAGACAC 58.498 43.478 6.11 0.00 42.36 3.67
3708 4819 4.222366 TCTCAGATCAAGCAATGAGACACT 59.778 41.667 6.11 0.00 42.36 3.55
3709 4820 5.420104 TCTCAGATCAAGCAATGAGACACTA 59.580 40.000 6.11 0.00 42.36 2.74
3710 4821 5.658468 TCAGATCAAGCAATGAGACACTAG 58.342 41.667 0.00 0.00 42.53 2.57
3711 4822 5.420104 TCAGATCAAGCAATGAGACACTAGA 59.580 40.000 0.00 0.00 42.53 2.43
3712 4823 6.097981 TCAGATCAAGCAATGAGACACTAGAT 59.902 38.462 0.00 0.00 42.53 1.98
3713 4824 6.762187 CAGATCAAGCAATGAGACACTAGATT 59.238 38.462 0.00 0.00 42.53 2.40
3714 4825 7.924947 CAGATCAAGCAATGAGACACTAGATTA 59.075 37.037 0.00 0.00 42.53 1.75
3715 4826 7.925483 AGATCAAGCAATGAGACACTAGATTAC 59.075 37.037 0.00 0.00 42.53 1.89
3716 4827 7.175347 TCAAGCAATGAGACACTAGATTACT 57.825 36.000 0.00 0.00 33.04 2.24
3717 4828 7.615403 TCAAGCAATGAGACACTAGATTACTT 58.385 34.615 0.00 0.00 33.04 2.24
3718 4829 7.761704 TCAAGCAATGAGACACTAGATTACTTC 59.238 37.037 0.00 0.00 33.04 3.01
3719 4830 7.175347 AGCAATGAGACACTAGATTACTTCA 57.825 36.000 0.00 0.00 0.00 3.02
3720 4831 7.264221 AGCAATGAGACACTAGATTACTTCAG 58.736 38.462 0.00 0.00 0.00 3.02
3721 4832 7.038659 GCAATGAGACACTAGATTACTTCAGT 58.961 38.462 0.00 0.00 0.00 3.41
3722 4833 7.547370 GCAATGAGACACTAGATTACTTCAGTT 59.453 37.037 0.00 0.00 0.00 3.16
3723 4834 9.429359 CAATGAGACACTAGATTACTTCAGTTT 57.571 33.333 0.00 0.00 0.00 2.66
3726 4837 9.909644 TGAGACACTAGATTACTTCAGTTTTAC 57.090 33.333 0.00 0.00 0.00 2.01
3727 4838 9.909644 GAGACACTAGATTACTTCAGTTTTACA 57.090 33.333 0.00 0.00 0.00 2.41
3730 4841 9.436957 ACACTAGATTACTTCAGTTTTACATGG 57.563 33.333 0.00 0.00 0.00 3.66
3731 4842 9.436957 CACTAGATTACTTCAGTTTTACATGGT 57.563 33.333 0.00 0.00 0.00 3.55
3738 4849 7.907214 ACTTCAGTTTTACATGGTATCAGAC 57.093 36.000 0.00 0.00 0.00 3.51
3739 4850 7.450074 ACTTCAGTTTTACATGGTATCAGACA 58.550 34.615 0.00 0.00 0.00 3.41
3740 4851 8.103305 ACTTCAGTTTTACATGGTATCAGACAT 58.897 33.333 0.00 0.00 0.00 3.06
3741 4852 8.492673 TTCAGTTTTACATGGTATCAGACATC 57.507 34.615 0.00 0.00 0.00 3.06
3742 4853 6.756542 TCAGTTTTACATGGTATCAGACATCG 59.243 38.462 0.00 0.00 0.00 3.84
3743 4854 6.756542 CAGTTTTACATGGTATCAGACATCGA 59.243 38.462 0.00 0.00 0.00 3.59
3744 4855 7.439356 CAGTTTTACATGGTATCAGACATCGAT 59.561 37.037 0.00 0.00 0.00 3.59
3745 4856 7.653713 AGTTTTACATGGTATCAGACATCGATC 59.346 37.037 0.00 0.00 0.00 3.69
3746 4857 4.527509 ACATGGTATCAGACATCGATCC 57.472 45.455 0.00 0.00 0.00 3.36
3747 4858 3.259374 ACATGGTATCAGACATCGATCCC 59.741 47.826 0.00 0.00 0.00 3.85
3748 4859 3.244887 TGGTATCAGACATCGATCCCT 57.755 47.619 0.00 0.00 0.00 4.20
3749 4860 4.382386 TGGTATCAGACATCGATCCCTA 57.618 45.455 0.00 0.00 0.00 3.53
3750 4861 4.079970 TGGTATCAGACATCGATCCCTAC 58.920 47.826 0.00 0.00 0.00 3.18
3751 4862 3.444388 GGTATCAGACATCGATCCCTACC 59.556 52.174 0.00 0.00 0.00 3.18
3752 4863 3.534357 ATCAGACATCGATCCCTACCT 57.466 47.619 0.00 0.00 0.00 3.08
3753 4864 2.865079 TCAGACATCGATCCCTACCTC 58.135 52.381 0.00 0.00 0.00 3.85
3754 4865 1.889829 CAGACATCGATCCCTACCTCC 59.110 57.143 0.00 0.00 0.00 4.30
3755 4866 1.783979 AGACATCGATCCCTACCTCCT 59.216 52.381 0.00 0.00 0.00 3.69
3756 4867 2.178106 AGACATCGATCCCTACCTCCTT 59.822 50.000 0.00 0.00 0.00 3.36
3757 4868 2.966516 GACATCGATCCCTACCTCCTTT 59.033 50.000 0.00 0.00 0.00 3.11
3758 4869 2.966516 ACATCGATCCCTACCTCCTTTC 59.033 50.000 0.00 0.00 0.00 2.62
3759 4870 2.083628 TCGATCCCTACCTCCTTTCC 57.916 55.000 0.00 0.00 0.00 3.13
3760 4871 1.574339 TCGATCCCTACCTCCTTTCCT 59.426 52.381 0.00 0.00 0.00 3.36
3761 4872 1.964933 CGATCCCTACCTCCTTTCCTC 59.035 57.143 0.00 0.00 0.00 3.71
3762 4873 1.964933 GATCCCTACCTCCTTTCCTCG 59.035 57.143 0.00 0.00 0.00 4.63
3763 4874 0.686769 TCCCTACCTCCTTTCCTCGC 60.687 60.000 0.00 0.00 0.00 5.03
3764 4875 1.687297 CCCTACCTCCTTTCCTCGCC 61.687 65.000 0.00 0.00 0.00 5.54
3765 4876 0.976073 CCTACCTCCTTTCCTCGCCA 60.976 60.000 0.00 0.00 0.00 5.69
3766 4877 1.123928 CTACCTCCTTTCCTCGCCAT 58.876 55.000 0.00 0.00 0.00 4.40
3767 4878 0.830648 TACCTCCTTTCCTCGCCATG 59.169 55.000 0.00 0.00 0.00 3.66
3768 4879 0.909610 ACCTCCTTTCCTCGCCATGA 60.910 55.000 0.00 0.00 0.00 3.07
3769 4880 0.462759 CCTCCTTTCCTCGCCATGAC 60.463 60.000 0.00 0.00 0.00 3.06
3770 4881 0.462759 CTCCTTTCCTCGCCATGACC 60.463 60.000 0.00 0.00 0.00 4.02
3771 4882 1.198094 TCCTTTCCTCGCCATGACCA 61.198 55.000 0.00 0.00 0.00 4.02
3772 4883 0.322456 CCTTTCCTCGCCATGACCAA 60.322 55.000 0.00 0.00 0.00 3.67
3773 4884 0.804989 CTTTCCTCGCCATGACCAAC 59.195 55.000 0.00 0.00 0.00 3.77
3774 4885 0.608035 TTTCCTCGCCATGACCAACC 60.608 55.000 0.00 0.00 0.00 3.77
3775 4886 2.438434 CCTCGCCATGACCAACCC 60.438 66.667 0.00 0.00 0.00 4.11
3776 4887 2.438434 CTCGCCATGACCAACCCC 60.438 66.667 0.00 0.00 0.00 4.95
3777 4888 4.402528 TCGCCATGACCAACCCCG 62.403 66.667 0.00 0.00 0.00 5.73
3779 4890 4.360405 GCCATGACCAACCCCGGT 62.360 66.667 0.00 0.00 43.91 5.28
3799 4910 3.658422 GGAACCACCACCCCCTCC 61.658 72.222 0.00 0.00 38.79 4.30
3800 4911 2.531942 GAACCACCACCCCCTCCT 60.532 66.667 0.00 0.00 0.00 3.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
216 219 6.377327 AGAGACAATGTCAAAACAAATCGT 57.623 33.333 16.38 0.00 39.30 3.73
223 230 5.052370 GCAAAACGAGAGACAATGTCAAAAC 60.052 40.000 16.38 4.25 34.60 2.43
491 1262 3.487120 ACTCCCGTAATTAATGGCCTC 57.513 47.619 3.32 0.00 32.21 4.70
763 1576 5.253330 GTGGTTTGGATAAGGTGAATCTGA 58.747 41.667 0.00 0.00 0.00 3.27
764 1577 4.094887 CGTGGTTTGGATAAGGTGAATCTG 59.905 45.833 0.00 0.00 0.00 2.90
765 1578 4.261801 CGTGGTTTGGATAAGGTGAATCT 58.738 43.478 0.00 0.00 0.00 2.40
766 1579 3.181500 GCGTGGTTTGGATAAGGTGAATC 60.181 47.826 0.00 0.00 0.00 2.52
767 1580 2.752903 GCGTGGTTTGGATAAGGTGAAT 59.247 45.455 0.00 0.00 0.00 2.57
768 1581 2.156098 GCGTGGTTTGGATAAGGTGAA 58.844 47.619 0.00 0.00 0.00 3.18
769 1582 1.349688 AGCGTGGTTTGGATAAGGTGA 59.650 47.619 0.00 0.00 0.00 4.02
770 1583 1.737793 GAGCGTGGTTTGGATAAGGTG 59.262 52.381 0.00 0.00 0.00 4.00
771 1584 1.674817 CGAGCGTGGTTTGGATAAGGT 60.675 52.381 0.00 0.00 0.00 3.50
772 1585 1.006832 CGAGCGTGGTTTGGATAAGG 58.993 55.000 0.00 0.00 0.00 2.69
773 1586 1.659098 GACGAGCGTGGTTTGGATAAG 59.341 52.381 0.00 0.00 0.00 1.73
774 1587 1.001068 TGACGAGCGTGGTTTGGATAA 59.999 47.619 0.00 0.00 0.00 1.75
775 1588 0.604073 TGACGAGCGTGGTTTGGATA 59.396 50.000 0.00 0.00 0.00 2.59
787 1600 4.568359 ACAATTATGTCAGTGATGACGAGC 59.432 41.667 0.00 0.00 41.43 5.03
807 1621 0.531657 GCCATAGTGCCATGCAACAA 59.468 50.000 0.00 0.00 41.47 2.83
809 1623 0.101759 CTGCCATAGTGCCATGCAAC 59.898 55.000 0.00 0.00 41.47 4.17
819 1634 1.958288 AAGGTGACCTCTGCCATAGT 58.042 50.000 3.76 0.00 30.89 2.12
820 1635 3.900601 AGATAAGGTGACCTCTGCCATAG 59.099 47.826 3.76 0.00 30.89 2.23
821 1636 3.928754 AGATAAGGTGACCTCTGCCATA 58.071 45.455 3.76 0.00 30.89 2.74
822 1637 2.769209 AGATAAGGTGACCTCTGCCAT 58.231 47.619 3.76 0.00 30.89 4.40
823 1638 2.254152 AGATAAGGTGACCTCTGCCA 57.746 50.000 3.76 0.00 30.89 4.92
824 1639 4.965200 AATAGATAAGGTGACCTCTGCC 57.035 45.455 3.76 0.00 30.89 4.85
825 1640 7.604545 GGATAAAATAGATAAGGTGACCTCTGC 59.395 40.741 3.76 0.00 30.89 4.26
826 1641 8.651389 TGGATAAAATAGATAAGGTGACCTCTG 58.349 37.037 3.76 0.00 30.89 3.35
827 1642 8.798975 TGGATAAAATAGATAAGGTGACCTCT 57.201 34.615 3.76 0.01 30.89 3.69
828 1643 9.847224 TTTGGATAAAATAGATAAGGTGACCTC 57.153 33.333 3.76 0.00 30.89 3.85
881 1696 4.946478 AGAATCACTAGTGTATCTGGGC 57.054 45.455 21.99 5.24 0.00 5.36
883 1698 6.137794 ACGAAGAATCACTAGTGTATCTGG 57.862 41.667 24.08 21.17 31.04 3.86
884 1699 6.846786 CGTACGAAGAATCACTAGTGTATCTG 59.153 42.308 24.08 17.84 31.04 2.90
885 1700 6.511444 GCGTACGAAGAATCACTAGTGTATCT 60.511 42.308 21.65 20.99 0.00 1.98
886 1701 5.620417 GCGTACGAAGAATCACTAGTGTATC 59.380 44.000 21.65 19.32 0.00 2.24
887 1702 5.065602 TGCGTACGAAGAATCACTAGTGTAT 59.934 40.000 21.65 12.25 0.00 2.29
927 1748 7.738847 AGTGGAACCAATCATTCAAGAAAAAT 58.261 30.769 0.00 0.00 37.80 1.82
936 1757 2.359900 AGCGAGTGGAACCAATCATTC 58.640 47.619 18.80 8.85 40.57 2.67
937 1758 2.496899 AGCGAGTGGAACCAATCATT 57.503 45.000 18.80 5.64 40.57 2.57
938 1759 3.627395 TTAGCGAGTGGAACCAATCAT 57.373 42.857 18.80 10.48 40.57 2.45
941 1776 4.192317 GAGAATTAGCGAGTGGAACCAAT 58.808 43.478 0.00 0.00 37.80 3.16
980 1819 5.127845 TGCATGAACTGGTAAAAGTTTGGAA 59.872 36.000 0.00 0.00 40.48 3.53
981 1820 4.646945 TGCATGAACTGGTAAAAGTTTGGA 59.353 37.500 0.00 0.00 40.48 3.53
982 1821 4.744631 GTGCATGAACTGGTAAAAGTTTGG 59.255 41.667 0.00 0.00 40.48 3.28
1282 2128 2.664081 CCAGGTGGAGGAGCAGGAC 61.664 68.421 0.00 0.00 37.39 3.85
1413 2260 4.492160 GCGATGTCGGAGCCGTCA 62.492 66.667 10.94 10.94 40.74 4.35
1540 2390 0.994247 ATCTTGGCCATGACCAGACA 59.006 50.000 22.61 0.00 41.82 3.41
1542 2392 0.548031 GGATCTTGGCCATGACCAGA 59.452 55.000 22.61 14.72 41.82 3.86
1890 2752 0.728466 GGAGAACGTCCACGAAGTCG 60.728 60.000 6.03 0.00 46.10 4.18
1941 2803 5.068198 CACCAAAATAGCCTTGATATGCTGT 59.932 40.000 0.00 0.00 38.52 4.40
2039 2901 5.708697 TCGTAGACAAGTATTTCCAGACTGA 59.291 40.000 3.32 0.00 0.00 3.41
2041 2903 6.585695 TTCGTAGACAAGTATTTCCAGACT 57.414 37.500 0.00 0.00 34.32 3.24
2045 2907 8.664798 CATTCATTTCGTAGACAAGTATTTCCA 58.335 33.333 0.00 0.00 34.32 3.53
2102 2964 9.082313 ACTTGTCTCACAAATGGATAAAAAGAT 57.918 29.630 0.00 0.00 37.69 2.40
2117 2979 3.613193 CGTCCGGAATTACTTGTCTCACA 60.613 47.826 5.23 0.00 0.00 3.58
2118 2980 2.921754 CGTCCGGAATTACTTGTCTCAC 59.078 50.000 5.23 0.00 0.00 3.51
2121 2983 2.165845 CTCCGTCCGGAATTACTTGTCT 59.834 50.000 5.23 0.00 44.66 3.41
2123 2985 1.206371 CCTCCGTCCGGAATTACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
2135 2997 4.096682 CGATCTAATTATCTCCCTCCGTCC 59.903 50.000 0.00 0.00 0.00 4.79
2139 3001 7.411486 TGATTCGATCTAATTATCTCCCTCC 57.589 40.000 0.00 0.00 0.00 4.30
2140 3002 9.311916 CATTGATTCGATCTAATTATCTCCCTC 57.688 37.037 0.00 0.00 0.00 4.30
2163 3028 5.163622 GCTACAAACATGTCCTGCATACATT 60.164 40.000 11.13 1.76 35.39 2.71
2254 3121 1.535204 CGGCTTGGAGTTTGGCCATT 61.535 55.000 6.09 0.00 44.27 3.16
2380 3247 1.694169 GAGGAGGAGGGGCAATGGA 60.694 63.158 0.00 0.00 0.00 3.41
2457 3324 2.691526 GCCCACACATTGATGATGACAT 59.308 45.455 0.00 0.00 39.15 3.06
2587 3454 1.078426 CCTTCGTCCGGCTCCAAAT 60.078 57.895 0.00 0.00 0.00 2.32
2599 3466 0.105862 TCCCGGGACATATCCTTCGT 60.106 55.000 22.63 0.00 45.46 3.85
2692 3559 0.886490 GGTCCTTATGCTGCATCCGG 60.886 60.000 19.90 19.18 0.00 5.14
2725 3592 4.000988 GGTGTATCGTCATTCCAAACACT 58.999 43.478 0.00 0.00 36.77 3.55
2802 3669 8.553459 AAAAGTACATGGAGACTATGACAAAG 57.447 34.615 0.00 0.00 0.00 2.77
2826 3693 6.533367 GCATGGAAACTATTATTCGCCAAAAA 59.467 34.615 0.00 0.00 0.00 1.94
2827 3694 6.039616 GCATGGAAACTATTATTCGCCAAAA 58.960 36.000 0.00 0.00 0.00 2.44
2828 3695 5.126222 TGCATGGAAACTATTATTCGCCAAA 59.874 36.000 0.00 0.00 0.00 3.28
2829 3696 4.642437 TGCATGGAAACTATTATTCGCCAA 59.358 37.500 0.00 0.00 0.00 4.52
2830 3697 4.036262 GTGCATGGAAACTATTATTCGCCA 59.964 41.667 0.00 0.00 0.00 5.69
2831 3698 4.275936 AGTGCATGGAAACTATTATTCGCC 59.724 41.667 0.00 0.00 0.00 5.54
2832 3699 5.424121 AGTGCATGGAAACTATTATTCGC 57.576 39.130 0.00 0.00 0.00 4.70
2833 3700 6.785191 ACAAGTGCATGGAAACTATTATTCG 58.215 36.000 0.00 0.00 0.00 3.34
2834 3701 9.722056 CTTACAAGTGCATGGAAACTATTATTC 57.278 33.333 0.00 0.00 0.00 1.75
2835 3702 8.686334 CCTTACAAGTGCATGGAAACTATTATT 58.314 33.333 0.00 0.00 0.00 1.40
2836 3703 7.285401 CCCTTACAAGTGCATGGAAACTATTAT 59.715 37.037 0.00 0.00 0.00 1.28
2837 3704 6.601613 CCCTTACAAGTGCATGGAAACTATTA 59.398 38.462 0.00 0.00 0.00 0.98
2838 3705 5.418840 CCCTTACAAGTGCATGGAAACTATT 59.581 40.000 0.00 0.00 0.00 1.73
2899 3771 9.739276 CACCATACATCTAAATGTTATGGGTAT 57.261 33.333 19.53 0.00 43.74 2.73
2900 3772 7.663905 GCACCATACATCTAAATGTTATGGGTA 59.336 37.037 19.53 0.00 43.74 3.69
2901 3773 6.490040 GCACCATACATCTAAATGTTATGGGT 59.510 38.462 19.53 11.26 43.74 4.51
2902 3774 6.489700 TGCACCATACATCTAAATGTTATGGG 59.510 38.462 19.53 13.92 43.74 4.00
2909 3782 4.883585 ACACCTGCACCATACATCTAAATG 59.116 41.667 0.00 0.00 38.93 2.32
2945 3821 2.481289 AGGGCAACACTAGAGAAAGC 57.519 50.000 0.00 0.00 39.74 3.51
2946 3822 3.769844 TCCTAGGGCAACACTAGAGAAAG 59.230 47.826 9.46 0.00 38.82 2.62
2959 3835 3.227614 GTTGGAAAAACTTCCTAGGGCA 58.772 45.455 9.46 0.00 41.65 5.36
2961 3837 3.483421 ACGTTGGAAAAACTTCCTAGGG 58.517 45.455 9.46 0.00 41.65 3.53
2963 3839 3.363673 GCGACGTTGGAAAAACTTCCTAG 60.364 47.826 4.64 0.34 41.65 3.02
2966 3842 1.332686 AGCGACGTTGGAAAAACTTCC 59.667 47.619 4.64 0.00 41.48 3.46
2984 3860 2.100991 CATGGCGCCTTCGAAAGC 59.899 61.111 29.70 8.75 38.10 3.51
3000 3876 3.237268 AGAGGTTGGCCATGTTAAACA 57.763 42.857 6.09 0.00 37.19 2.83
3001 3877 5.394115 CCATAAGAGGTTGGCCATGTTAAAC 60.394 44.000 6.09 0.00 37.19 2.01
3012 3888 3.303351 AATCTGGCCATAAGAGGTTGG 57.697 47.619 5.51 0.00 36.03 3.77
3016 3892 6.774656 AGAATGTAAAATCTGGCCATAAGAGG 59.225 38.462 5.51 0.00 0.00 3.69
3017 3893 7.814264 AGAATGTAAAATCTGGCCATAAGAG 57.186 36.000 5.51 0.00 0.00 2.85
3025 3901 9.346725 CAACTTCTTAAGAATGTAAAATCTGGC 57.653 33.333 18.02 0.00 33.01 4.85
3031 3907 9.020731 GGGGATCAACTTCTTAAGAATGTAAAA 57.979 33.333 18.02 8.15 33.01 1.52
3032 3908 8.167392 TGGGGATCAACTTCTTAAGAATGTAAA 58.833 33.333 18.02 10.09 33.01 2.01
3065 3941 7.384660 GGACAATGTGCATGTTAAAAGAATTGA 59.615 33.333 0.00 0.00 0.00 2.57
3086 3962 1.814394 GCATGAAGCTGATGTGGACAA 59.186 47.619 0.00 0.00 41.15 3.18
3190 4082 8.294341 TCTTCTTTCGTATAATAAGCGATTGG 57.706 34.615 0.00 0.00 34.52 3.16
3271 4166 4.922206 AGAGGCATGAAATTAGTTGGTGA 58.078 39.130 0.00 0.00 0.00 4.02
3315 4210 5.363868 TGGTGGATAAGATGAAGACGAAGAT 59.636 40.000 0.00 0.00 0.00 2.40
3359 4254 5.422214 AAAAGTAGGATCAGGTCAATCGT 57.578 39.130 0.00 0.00 0.00 3.73
3360 4255 6.018669 GCTTAAAAGTAGGATCAGGTCAATCG 60.019 42.308 0.00 0.00 0.00 3.34
3364 4259 5.755409 TGCTTAAAAGTAGGATCAGGTCA 57.245 39.130 0.00 0.00 0.00 4.02
3376 4271 5.416013 GCTAGGAGATTGGTTGCTTAAAAGT 59.584 40.000 0.00 0.00 0.00 2.66
3505 4615 4.277515 TCAAGATCGAATGGGATCATCC 57.722 45.455 0.00 0.00 44.21 3.51
3545 4656 6.876257 AGCAGGATGAAGATAATTAACGGATC 59.124 38.462 0.00 0.00 39.69 3.36
3568 4679 2.866762 CCAAGTCTATCGCCTAACAAGC 59.133 50.000 0.00 0.00 0.00 4.01
3571 4682 3.093814 TGACCAAGTCTATCGCCTAACA 58.906 45.455 0.00 0.00 33.15 2.41
3572 4683 3.707793 CTGACCAAGTCTATCGCCTAAC 58.292 50.000 0.00 0.00 33.15 2.34
3573 4684 2.100916 GCTGACCAAGTCTATCGCCTAA 59.899 50.000 0.00 0.00 33.15 2.69
3574 4685 1.681793 GCTGACCAAGTCTATCGCCTA 59.318 52.381 0.00 0.00 33.15 3.93
3575 4686 0.461961 GCTGACCAAGTCTATCGCCT 59.538 55.000 0.00 0.00 33.15 5.52
3576 4687 0.461961 AGCTGACCAAGTCTATCGCC 59.538 55.000 0.00 0.00 33.15 5.54
3577 4688 1.135139 TGAGCTGACCAAGTCTATCGC 59.865 52.381 0.00 0.00 33.15 4.58
3578 4689 2.223688 CCTGAGCTGACCAAGTCTATCG 60.224 54.545 0.00 0.00 33.15 2.92
3579 4690 3.027412 TCCTGAGCTGACCAAGTCTATC 58.973 50.000 0.00 0.00 33.15 2.08
3580 4691 3.030291 CTCCTGAGCTGACCAAGTCTAT 58.970 50.000 0.00 0.00 33.15 1.98
3581 4692 2.451490 CTCCTGAGCTGACCAAGTCTA 58.549 52.381 0.00 0.00 33.15 2.59
3582 4693 1.265236 CTCCTGAGCTGACCAAGTCT 58.735 55.000 0.00 0.00 33.15 3.24
3583 4694 3.830679 CTCCTGAGCTGACCAAGTC 57.169 57.895 0.00 0.00 0.00 3.01
3606 4717 4.457496 ATCGTGGGCAGGAGCGTG 62.457 66.667 0.00 0.00 43.41 5.34
3607 4718 4.148825 GATCGTGGGCAGGAGCGT 62.149 66.667 0.00 0.00 43.41 5.07
3608 4719 4.147449 TGATCGTGGGCAGGAGCG 62.147 66.667 0.00 0.00 43.41 5.03
3609 4720 2.512515 GTGATCGTGGGCAGGAGC 60.513 66.667 0.00 0.00 41.10 4.70
3610 4721 2.187946 GGTGATCGTGGGCAGGAG 59.812 66.667 0.00 0.00 0.00 3.69
3611 4722 2.606213 TGGTGATCGTGGGCAGGA 60.606 61.111 0.00 0.00 0.00 3.86
3612 4723 1.613317 TAGTGGTGATCGTGGGCAGG 61.613 60.000 0.00 0.00 0.00 4.85
3613 4724 0.460284 GTAGTGGTGATCGTGGGCAG 60.460 60.000 0.00 0.00 0.00 4.85
3614 4725 1.594833 GTAGTGGTGATCGTGGGCA 59.405 57.895 0.00 0.00 0.00 5.36
3615 4726 1.518572 CGTAGTGGTGATCGTGGGC 60.519 63.158 0.00 0.00 0.00 5.36
3616 4727 1.518572 GCGTAGTGGTGATCGTGGG 60.519 63.158 0.00 0.00 0.00 4.61
3617 4728 1.518572 GGCGTAGTGGTGATCGTGG 60.519 63.158 0.00 0.00 0.00 4.94
3618 4729 1.518572 GGGCGTAGTGGTGATCGTG 60.519 63.158 0.00 0.00 0.00 4.35
3619 4730 1.327690 ATGGGCGTAGTGGTGATCGT 61.328 55.000 0.00 0.00 0.00 3.73
3620 4731 0.875908 CATGGGCGTAGTGGTGATCG 60.876 60.000 0.00 0.00 0.00 3.69
3621 4732 0.178068 ACATGGGCGTAGTGGTGATC 59.822 55.000 0.00 0.00 0.00 2.92
3622 4733 0.618458 AACATGGGCGTAGTGGTGAT 59.382 50.000 0.00 0.00 0.00 3.06
3623 4734 0.398696 AAACATGGGCGTAGTGGTGA 59.601 50.000 0.00 0.00 0.00 4.02
3624 4735 0.521291 CAAACATGGGCGTAGTGGTG 59.479 55.000 0.00 0.00 0.00 4.17
3625 4736 0.608035 CCAAACATGGGCGTAGTGGT 60.608 55.000 0.00 0.00 0.00 4.16
3626 4737 0.322098 TCCAAACATGGGCGTAGTGG 60.322 55.000 0.00 0.00 0.00 4.00
3627 4738 1.199097 GTTCCAAACATGGGCGTAGTG 59.801 52.381 0.00 0.00 0.00 2.74
3628 4739 1.530323 GTTCCAAACATGGGCGTAGT 58.470 50.000 0.00 0.00 0.00 2.73
3629 4740 0.808755 GGTTCCAAACATGGGCGTAG 59.191 55.000 0.00 0.00 0.00 3.51
3630 4741 0.956410 CGGTTCCAAACATGGGCGTA 60.956 55.000 0.00 0.00 0.00 4.42
3631 4742 2.265182 CGGTTCCAAACATGGGCGT 61.265 57.895 0.00 0.00 0.00 5.68
3632 4743 2.566010 CGGTTCCAAACATGGGCG 59.434 61.111 0.00 0.00 0.00 6.13
3633 4744 2.969827 CCGGTTCCAAACATGGGC 59.030 61.111 0.00 0.00 0.00 5.36
3634 4745 0.322997 TAGCCGGTTCCAAACATGGG 60.323 55.000 1.90 0.00 0.00 4.00
3635 4746 0.808755 GTAGCCGGTTCCAAACATGG 59.191 55.000 1.90 0.00 0.00 3.66
3636 4747 0.446222 CGTAGCCGGTTCCAAACATG 59.554 55.000 1.90 0.00 0.00 3.21
3637 4748 2.849081 CGTAGCCGGTTCCAAACAT 58.151 52.632 1.90 0.00 0.00 2.71
3638 4749 4.364817 CGTAGCCGGTTCCAAACA 57.635 55.556 1.90 0.00 0.00 2.83
3650 4761 1.468736 GGTACATATAGCGGCCGTAGC 60.469 57.143 28.70 14.78 38.76 3.58
3651 4762 1.133790 GGGTACATATAGCGGCCGTAG 59.866 57.143 28.70 12.57 0.00 3.51
3652 4763 1.176527 GGGTACATATAGCGGCCGTA 58.823 55.000 28.70 17.82 0.00 4.02
3653 4764 1.538687 GGGGTACATATAGCGGCCGT 61.539 60.000 28.70 16.08 0.00 5.68
3654 4765 1.217244 GGGGTACATATAGCGGCCG 59.783 63.158 24.05 24.05 0.00 6.13
3655 4766 0.535797 GAGGGGTACATATAGCGGCC 59.464 60.000 0.00 0.00 0.00 6.13
3656 4767 1.477295 GAGAGGGGTACATATAGCGGC 59.523 57.143 0.00 0.00 0.00 6.53
3657 4768 3.018149 GAGAGAGGGGTACATATAGCGG 58.982 54.545 0.00 0.00 0.00 5.52
3658 4769 3.942748 GAGAGAGAGGGGTACATATAGCG 59.057 52.174 0.00 0.00 0.00 4.26
3659 4770 4.947388 CAGAGAGAGAGGGGTACATATAGC 59.053 50.000 0.00 0.00 0.00 2.97
3660 4771 6.134535 ACAGAGAGAGAGGGGTACATATAG 57.865 45.833 0.00 0.00 0.00 1.31
3661 4772 7.685052 AGATACAGAGAGAGAGGGGTACATATA 59.315 40.741 0.00 0.00 0.00 0.86
3662 4773 6.507485 AGATACAGAGAGAGAGGGGTACATAT 59.493 42.308 0.00 0.00 0.00 1.78
3663 4774 5.852807 AGATACAGAGAGAGAGGGGTACATA 59.147 44.000 0.00 0.00 0.00 2.29
3664 4775 4.667858 AGATACAGAGAGAGAGGGGTACAT 59.332 45.833 0.00 0.00 0.00 2.29
3665 4776 4.048600 AGATACAGAGAGAGAGGGGTACA 58.951 47.826 0.00 0.00 0.00 2.90
3666 4777 4.103469 TGAGATACAGAGAGAGAGGGGTAC 59.897 50.000 0.00 0.00 0.00 3.34
3667 4778 4.308128 TGAGATACAGAGAGAGAGGGGTA 58.692 47.826 0.00 0.00 0.00 3.69
3668 4779 3.127250 TGAGATACAGAGAGAGAGGGGT 58.873 50.000 0.00 0.00 0.00 4.95
3669 4780 3.874383 TGAGATACAGAGAGAGAGGGG 57.126 52.381 0.00 0.00 0.00 4.79
3680 4791 6.421501 GTCTCATTGCTTGATCTGAGATACAG 59.578 42.308 11.84 0.00 44.18 2.74
3681 4792 6.127253 TGTCTCATTGCTTGATCTGAGATACA 60.127 38.462 11.84 5.87 44.18 2.29
3682 4793 6.200665 GTGTCTCATTGCTTGATCTGAGATAC 59.799 42.308 16.19 16.19 44.18 2.24
3683 4794 6.097981 AGTGTCTCATTGCTTGATCTGAGATA 59.902 38.462 11.84 7.73 44.18 1.98
3684 4795 5.104859 AGTGTCTCATTGCTTGATCTGAGAT 60.105 40.000 11.84 0.00 44.18 2.75
3685 4796 4.222366 AGTGTCTCATTGCTTGATCTGAGA 59.778 41.667 6.11 6.11 41.25 3.27
3686 4797 4.505808 AGTGTCTCATTGCTTGATCTGAG 58.494 43.478 0.00 0.00 37.14 3.35
3687 4798 4.548451 AGTGTCTCATTGCTTGATCTGA 57.452 40.909 0.00 0.00 32.72 3.27
3688 4799 5.658468 TCTAGTGTCTCATTGCTTGATCTG 58.342 41.667 0.00 0.00 32.72 2.90
3689 4800 5.929058 TCTAGTGTCTCATTGCTTGATCT 57.071 39.130 0.00 0.00 32.72 2.75
3690 4801 7.925483 AGTAATCTAGTGTCTCATTGCTTGATC 59.075 37.037 0.00 0.00 32.72 2.92
3691 4802 7.790027 AGTAATCTAGTGTCTCATTGCTTGAT 58.210 34.615 0.00 0.00 32.72 2.57
3692 4803 7.175347 AGTAATCTAGTGTCTCATTGCTTGA 57.825 36.000 0.00 0.00 0.00 3.02
3693 4804 7.547019 TGAAGTAATCTAGTGTCTCATTGCTTG 59.453 37.037 7.38 0.00 33.10 4.01
3694 4805 7.615403 TGAAGTAATCTAGTGTCTCATTGCTT 58.385 34.615 3.61 3.61 34.90 3.91
3695 4806 7.093552 ACTGAAGTAATCTAGTGTCTCATTGCT 60.094 37.037 0.00 0.00 0.00 3.91
3696 4807 7.038659 ACTGAAGTAATCTAGTGTCTCATTGC 58.961 38.462 0.00 0.00 0.00 3.56
3697 4808 8.994429 AACTGAAGTAATCTAGTGTCTCATTG 57.006 34.615 0.00 0.00 0.00 2.82
3700 4811 9.909644 GTAAAACTGAAGTAATCTAGTGTCTCA 57.090 33.333 0.00 0.00 0.00 3.27
3701 4812 9.909644 TGTAAAACTGAAGTAATCTAGTGTCTC 57.090 33.333 0.00 0.00 0.00 3.36
3704 4815 9.436957 CCATGTAAAACTGAAGTAATCTAGTGT 57.563 33.333 0.00 0.00 0.00 3.55
3705 4816 9.436957 ACCATGTAAAACTGAAGTAATCTAGTG 57.563 33.333 0.00 0.00 0.00 2.74
3712 4823 9.431887 GTCTGATACCATGTAAAACTGAAGTAA 57.568 33.333 0.00 0.00 0.00 2.24
3713 4824 8.590204 TGTCTGATACCATGTAAAACTGAAGTA 58.410 33.333 0.00 0.00 0.00 2.24
3714 4825 7.450074 TGTCTGATACCATGTAAAACTGAAGT 58.550 34.615 0.00 0.00 0.00 3.01
3715 4826 7.905604 TGTCTGATACCATGTAAAACTGAAG 57.094 36.000 0.00 0.00 0.00 3.02
3716 4827 7.277760 CGATGTCTGATACCATGTAAAACTGAA 59.722 37.037 0.00 0.00 0.00 3.02
3717 4828 6.756542 CGATGTCTGATACCATGTAAAACTGA 59.243 38.462 0.00 0.00 0.00 3.41
3718 4829 6.756542 TCGATGTCTGATACCATGTAAAACTG 59.243 38.462 0.00 0.00 0.00 3.16
3719 4830 6.873997 TCGATGTCTGATACCATGTAAAACT 58.126 36.000 0.00 0.00 0.00 2.66
3720 4831 7.095607 GGATCGATGTCTGATACCATGTAAAAC 60.096 40.741 0.54 0.00 0.00 2.43
3721 4832 6.929049 GGATCGATGTCTGATACCATGTAAAA 59.071 38.462 0.54 0.00 0.00 1.52
3722 4833 6.455647 GGATCGATGTCTGATACCATGTAAA 58.544 40.000 0.54 0.00 0.00 2.01
3723 4834 5.047306 GGGATCGATGTCTGATACCATGTAA 60.047 44.000 0.54 0.00 44.89 2.41
3724 4835 4.462834 GGGATCGATGTCTGATACCATGTA 59.537 45.833 0.54 0.00 44.89 2.29
3725 4836 3.259374 GGGATCGATGTCTGATACCATGT 59.741 47.826 0.54 0.00 44.89 3.21
3726 4837 3.854666 GGGATCGATGTCTGATACCATG 58.145 50.000 0.54 0.00 44.89 3.66
3729 4840 3.444388 GGTAGGGATCGATGTCTGATACC 59.556 52.174 0.54 3.06 45.74 2.73
3730 4841 4.337145 AGGTAGGGATCGATGTCTGATAC 58.663 47.826 0.54 0.00 0.00 2.24
3731 4842 4.567958 GGAGGTAGGGATCGATGTCTGATA 60.568 50.000 0.54 0.00 0.00 2.15
3732 4843 3.426615 GAGGTAGGGATCGATGTCTGAT 58.573 50.000 0.54 0.00 0.00 2.90
3733 4844 2.489255 GGAGGTAGGGATCGATGTCTGA 60.489 54.545 0.54 0.00 0.00 3.27
3734 4845 1.889829 GGAGGTAGGGATCGATGTCTG 59.110 57.143 0.54 0.00 0.00 3.51
3735 4846 1.783979 AGGAGGTAGGGATCGATGTCT 59.216 52.381 0.54 2.22 0.00 3.41
3736 4847 2.296073 AGGAGGTAGGGATCGATGTC 57.704 55.000 0.54 0.00 0.00 3.06
3737 4848 2.777459 AAGGAGGTAGGGATCGATGT 57.223 50.000 0.54 0.00 0.00 3.06
3738 4849 2.300437 GGAAAGGAGGTAGGGATCGATG 59.700 54.545 0.54 0.00 0.00 3.84
3739 4850 2.180308 AGGAAAGGAGGTAGGGATCGAT 59.820 50.000 0.00 0.00 0.00 3.59
3740 4851 1.574339 AGGAAAGGAGGTAGGGATCGA 59.426 52.381 0.00 0.00 0.00 3.59
3741 4852 1.964933 GAGGAAAGGAGGTAGGGATCG 59.035 57.143 0.00 0.00 0.00 3.69
3742 4853 1.964933 CGAGGAAAGGAGGTAGGGATC 59.035 57.143 0.00 0.00 0.00 3.36
3743 4854 2.035331 GCGAGGAAAGGAGGTAGGGAT 61.035 57.143 0.00 0.00 0.00 3.85
3744 4855 0.686769 GCGAGGAAAGGAGGTAGGGA 60.687 60.000 0.00 0.00 0.00 4.20
3745 4856 1.687297 GGCGAGGAAAGGAGGTAGGG 61.687 65.000 0.00 0.00 0.00 3.53
3746 4857 0.976073 TGGCGAGGAAAGGAGGTAGG 60.976 60.000 0.00 0.00 0.00 3.18
3747 4858 1.123928 ATGGCGAGGAAAGGAGGTAG 58.876 55.000 0.00 0.00 0.00 3.18
3748 4859 0.830648 CATGGCGAGGAAAGGAGGTA 59.169 55.000 0.00 0.00 0.00 3.08
3749 4860 0.909610 TCATGGCGAGGAAAGGAGGT 60.910 55.000 0.00 0.00 0.00 3.85
3750 4861 0.462759 GTCATGGCGAGGAAAGGAGG 60.463 60.000 0.00 0.00 0.00 4.30
3751 4862 0.462759 GGTCATGGCGAGGAAAGGAG 60.463 60.000 0.00 0.00 0.00 3.69
3752 4863 1.198094 TGGTCATGGCGAGGAAAGGA 61.198 55.000 0.00 0.00 0.00 3.36
3753 4864 0.322456 TTGGTCATGGCGAGGAAAGG 60.322 55.000 0.00 0.00 0.00 3.11
3754 4865 0.804989 GTTGGTCATGGCGAGGAAAG 59.195 55.000 0.00 0.00 0.00 2.62
3755 4866 0.608035 GGTTGGTCATGGCGAGGAAA 60.608 55.000 0.00 0.00 0.00 3.13
3756 4867 1.002624 GGTTGGTCATGGCGAGGAA 60.003 57.895 0.00 0.00 0.00 3.36
3757 4868 2.668632 GGTTGGTCATGGCGAGGA 59.331 61.111 0.00 0.00 0.00 3.71
3758 4869 2.438434 GGGTTGGTCATGGCGAGG 60.438 66.667 0.00 0.00 0.00 4.63
3759 4870 2.438434 GGGGTTGGTCATGGCGAG 60.438 66.667 0.00 0.00 0.00 5.03
3760 4871 4.402528 CGGGGTTGGTCATGGCGA 62.403 66.667 0.00 0.00 0.00 5.54
3762 4873 4.360405 ACCGGGGTTGGTCATGGC 62.360 66.667 6.32 0.00 37.91 4.40
3778 4889 4.340246 GGGGTGGTGGTTCCCGAC 62.340 72.222 0.00 0.00 44.27 4.79
3781 4892 3.658422 GAGGGGGTGGTGGTTCCC 61.658 72.222 0.00 0.00 42.73 3.97
3782 4893 3.658422 GGAGGGGGTGGTGGTTCC 61.658 72.222 0.00 0.00 0.00 3.62
3783 4894 2.531942 AGGAGGGGGTGGTGGTTC 60.532 66.667 0.00 0.00 0.00 3.62


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.