Multiple sequence alignment - TraesCS6B01G051700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G051700 chr6B 100.000 5206 0 0 1 5206 30888723 30893928 0.000000e+00 9614
1 TraesCS6B01G051700 chr6B 96.930 4527 125 10 688 5206 31690714 31686194 0.000000e+00 7577
2 TraesCS6B01G051700 chr6B 79.442 3332 607 61 923 4216 693926992 693930283 0.000000e+00 2287
3 TraesCS6B01G051700 chr6B 82.525 1917 289 39 2357 4253 693937001 693938891 0.000000e+00 1642
4 TraesCS6B01G051700 chr6B 86.798 356 16 17 1 351 31691182 31690853 8.240000e-98 368
5 TraesCS6B01G051700 chr6B 95.238 126 5 1 472 597 31690840 31690716 1.140000e-46 198
6 TraesCS6B01G051700 chr6B 95.868 121 5 0 353 473 29260030 29260150 4.110000e-46 196
7 TraesCS6B01G051700 chr6B 95.041 121 6 0 346 466 455146399 455146519 1.910000e-44 191
8 TraesCS6B01G051700 chr6D 94.256 4091 212 18 803 4878 17500077 17504159 0.000000e+00 6231
9 TraesCS6B01G051700 chr6D 80.918 3354 585 47 925 4252 456424391 456427715 0.000000e+00 2597
10 TraesCS6B01G051700 chr6D 79.289 3317 629 44 955 4251 456408471 456411749 0.000000e+00 2266
11 TraesCS6B01G051700 chr6D 96.109 257 9 1 4950 5206 17504158 17504413 8.060000e-113 418
12 TraesCS6B01G051700 chr6A 92.794 3719 246 19 776 4479 18460914 18464625 0.000000e+00 5363
13 TraesCS6B01G051700 chr6A 81.086 3315 586 36 959 4252 603091680 603094974 0.000000e+00 2610
14 TraesCS6B01G051700 chr6A 80.626 3355 594 48 925 4252 603081507 603084832 0.000000e+00 2543
15 TraesCS6B01G051700 chr6A 83.250 2012 292 33 2259 4252 603101956 603103940 0.000000e+00 1807
16 TraesCS6B01G051700 chr6A 94.126 732 34 5 4476 5203 18464788 18465514 0.000000e+00 1105
17 TraesCS6B01G051700 chr6A 80.275 218 31 11 94 301 18460505 18460720 2.510000e-33 154
18 TraesCS6B01G051700 chr6A 87.500 112 8 5 632 738 610296739 610296629 1.970000e-24 124
19 TraesCS6B01G051700 chr7A 81.935 2563 411 41 1674 4202 725447750 725445206 0.000000e+00 2121
20 TraesCS6B01G051700 chr7A 93.976 83 4 1 604 685 677696241 677696323 1.970000e-24 124
21 TraesCS6B01G051700 chr7D 82.579 2342 362 37 1892 4202 629393875 629391549 0.000000e+00 2023
22 TraesCS6B01G051700 chr2D 92.568 148 9 1 600 745 498106108 498106255 1.470000e-50 211
23 TraesCS6B01G051700 chr3D 97.391 115 3 0 349 463 435646854 435646740 4.110000e-46 196
24 TraesCS6B01G051700 chr3D 87.591 137 10 4 610 741 305680116 305680250 9.030000e-33 152
25 TraesCS6B01G051700 chr3D 85.315 143 16 2 607 744 4485840 4485982 5.430000e-30 143
26 TraesCS6B01G051700 chr3D 84.507 142 16 3 610 745 93257363 93257504 9.090000e-28 135
27 TraesCS6B01G051700 chr2B 98.198 111 1 1 350 460 766568160 766568269 5.320000e-45 193
28 TraesCS6B01G051700 chr2B 80.986 142 22 4 610 746 25573823 25573682 1.980000e-19 108
29 TraesCS6B01G051700 chr4B 95.798 119 4 1 344 461 24769190 24769308 1.910000e-44 191
30 TraesCS6B01G051700 chr1B 96.522 115 4 0 346 460 359907232 359907346 1.910000e-44 191
31 TraesCS6B01G051700 chr1B 95.763 118 4 1 351 467 304517093 304517210 6.880000e-44 189
32 TraesCS6B01G051700 chr5B 94.355 124 6 1 342 464 228061828 228061951 6.880000e-44 189
33 TraesCS6B01G051700 chr7B 92.424 132 7 2 342 472 381903186 381903315 8.900000e-43 185
34 TraesCS6B01G051700 chr3B 83.217 143 19 4 610 752 364003778 364003915 5.470000e-25 126
35 TraesCS6B01G051700 chr3B 94.521 73 4 0 610 682 633539752 633539680 4.260000e-21 113
36 TraesCS6B01G051700 chr3B 95.312 64 3 0 682 745 584109026 584109089 9.220000e-18 102
37 TraesCS6B01G051700 chr3B 92.754 69 5 0 680 748 22833462 22833394 3.320000e-17 100
38 TraesCS6B01G051700 chr2A 92.958 71 4 1 680 749 239584406 239584476 9.220000e-18 102
39 TraesCS6B01G051700 chr2A 89.286 84 6 3 680 760 245942988 245942905 9.220000e-18 102


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G051700 chr6B 30888723 30893928 5205 False 9614.000000 9614 100.000000 1 5206 1 chr6B.!!$F2 5205
1 TraesCS6B01G051700 chr6B 31686194 31691182 4988 True 2714.333333 7577 92.988667 1 5206 3 chr6B.!!$R1 5205
2 TraesCS6B01G051700 chr6B 693926992 693930283 3291 False 2287.000000 2287 79.442000 923 4216 1 chr6B.!!$F4 3293
3 TraesCS6B01G051700 chr6B 693937001 693938891 1890 False 1642.000000 1642 82.525000 2357 4253 1 chr6B.!!$F5 1896
4 TraesCS6B01G051700 chr6D 17500077 17504413 4336 False 3324.500000 6231 95.182500 803 5206 2 chr6D.!!$F3 4403
5 TraesCS6B01G051700 chr6D 456424391 456427715 3324 False 2597.000000 2597 80.918000 925 4252 1 chr6D.!!$F2 3327
6 TraesCS6B01G051700 chr6D 456408471 456411749 3278 False 2266.000000 2266 79.289000 955 4251 1 chr6D.!!$F1 3296
7 TraesCS6B01G051700 chr6A 603091680 603094974 3294 False 2610.000000 2610 81.086000 959 4252 1 chr6A.!!$F2 3293
8 TraesCS6B01G051700 chr6A 603081507 603084832 3325 False 2543.000000 2543 80.626000 925 4252 1 chr6A.!!$F1 3327
9 TraesCS6B01G051700 chr6A 18460505 18465514 5009 False 2207.333333 5363 89.065000 94 5203 3 chr6A.!!$F4 5109
10 TraesCS6B01G051700 chr6A 603101956 603103940 1984 False 1807.000000 1807 83.250000 2259 4252 1 chr6A.!!$F3 1993
11 TraesCS6B01G051700 chr7A 725445206 725447750 2544 True 2121.000000 2121 81.935000 1674 4202 1 chr7A.!!$R1 2528
12 TraesCS6B01G051700 chr7D 629391549 629393875 2326 True 2023.000000 2023 82.579000 1892 4202 1 chr7D.!!$R1 2310

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
369 493 0.033796 ACATACTCCCTCCGTTCCGA 60.034 55.000 0.00 0.0 0.00 4.55 F
381 505 1.060122 CCGTTCCGAATTACTTGTCGC 59.940 52.381 0.00 0.0 35.93 5.19 F
451 575 1.060122 GCGACGAGTAATTTGGAACGG 59.940 52.381 0.00 0.0 0.00 4.44 F
1677 1815 1.228124 TGAAAACCACCTCGCAGGG 60.228 57.895 7.06 0.0 40.58 4.45 F
2290 2428 1.565759 CAGGGTTCATTCCATCCTCCA 59.434 52.381 0.00 0.0 0.00 3.86 F
3065 3206 2.088423 TGTGGTGCTTGTTTTCTTCGT 58.912 42.857 0.00 0.0 0.00 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2316 2454 0.322456 TGTTCCTCCATGCGGAAAGG 60.322 55.000 14.13 3.83 42.21 3.11 R
2397 2535 4.941263 TGACCTGTGAACTTATTGTATGCC 59.059 41.667 0.00 0.00 0.00 4.40 R
2504 2642 3.504906 CACTGTCAGACTGCCAATTTCAT 59.495 43.478 6.91 0.00 0.00 2.57 R
3325 3466 0.907704 TGGCGGATCCTACCAAGTGT 60.908 55.000 18.43 0.00 35.26 3.55 R
3472 3613 1.241165 CCTTGCAGTTGCTGTGATGA 58.759 50.000 5.62 0.00 42.66 2.92 R
4665 5003 0.871722 AAGCTTTGCGCGTCATACAA 59.128 45.000 8.43 0.00 45.59 2.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 0.320508 GCCTCGTCGAGTTTCCCTTT 60.321 55.000 20.37 0.00 0.00 3.11
46 47 1.711206 CCTCGTCGAGTTTCCCTTTC 58.289 55.000 20.37 0.00 0.00 2.62
50 51 1.439679 GTCGAGTTTCCCTTTCGCAT 58.560 50.000 0.00 0.00 34.52 4.73
51 52 1.804748 GTCGAGTTTCCCTTTCGCATT 59.195 47.619 0.00 0.00 34.52 3.56
131 136 8.085296 TGTGCAAACCAATACTTCGAAAATATT 58.915 29.630 0.00 4.03 0.00 1.28
193 198 1.333308 CGCATAACCATTGCCATCGAA 59.667 47.619 0.00 0.00 36.75 3.71
221 235 1.669115 CGGGCGGATCCTGCATAAG 60.669 63.158 23.67 11.70 33.73 1.73
232 246 1.747355 CCTGCATAAGGTGGAAAGCAG 59.253 52.381 0.00 0.00 46.55 4.24
233 247 2.877097 TGCATAAGGTGGAAAGCAGA 57.123 45.000 0.00 0.00 0.00 4.26
239 253 5.334414 GCATAAGGTGGAAAGCAGATTATCG 60.334 44.000 0.00 0.00 0.00 2.92
244 258 4.503991 GGTGGAAAGCAGATTATCGAGGAT 60.504 45.833 0.00 0.00 0.00 3.24
250 264 5.384063 AGCAGATTATCGAGGATACACAG 57.616 43.478 0.00 0.00 41.41 3.66
351 475 5.189659 AGCACAAGGATCGACTCTAATAC 57.810 43.478 0.00 0.00 0.00 1.89
353 477 5.303078 AGCACAAGGATCGACTCTAATACAT 59.697 40.000 0.00 0.00 0.00 2.29
355 479 6.583050 GCACAAGGATCGACTCTAATACATAC 59.417 42.308 0.00 0.00 0.00 2.39
357 481 8.018520 CACAAGGATCGACTCTAATACATACTC 58.981 40.741 0.00 0.00 0.00 2.59
358 482 7.175293 ACAAGGATCGACTCTAATACATACTCC 59.825 40.741 0.00 0.00 0.00 3.85
359 483 6.181908 AGGATCGACTCTAATACATACTCCC 58.818 44.000 0.00 0.00 0.00 4.30
360 484 6.012333 AGGATCGACTCTAATACATACTCCCT 60.012 42.308 0.00 0.00 0.00 4.20
361 485 6.316890 GGATCGACTCTAATACATACTCCCTC 59.683 46.154 0.00 0.00 0.00 4.30
362 486 5.558818 TCGACTCTAATACATACTCCCTCC 58.441 45.833 0.00 0.00 0.00 4.30
363 487 4.392445 CGACTCTAATACATACTCCCTCCG 59.608 50.000 0.00 0.00 0.00 4.63
364 488 5.315348 GACTCTAATACATACTCCCTCCGT 58.685 45.833 0.00 0.00 0.00 4.69
365 489 5.703310 ACTCTAATACATACTCCCTCCGTT 58.297 41.667 0.00 0.00 0.00 4.44
366 490 5.769162 ACTCTAATACATACTCCCTCCGTTC 59.231 44.000 0.00 0.00 0.00 3.95
367 491 5.075493 TCTAATACATACTCCCTCCGTTCC 58.925 45.833 0.00 0.00 0.00 3.62
368 492 1.683943 TACATACTCCCTCCGTTCCG 58.316 55.000 0.00 0.00 0.00 4.30
369 493 0.033796 ACATACTCCCTCCGTTCCGA 60.034 55.000 0.00 0.00 0.00 4.55
370 494 1.108776 CATACTCCCTCCGTTCCGAA 58.891 55.000 0.00 0.00 0.00 4.30
371 495 1.687123 CATACTCCCTCCGTTCCGAAT 59.313 52.381 0.00 0.00 0.00 3.34
372 496 1.856629 TACTCCCTCCGTTCCGAATT 58.143 50.000 0.00 0.00 0.00 2.17
373 497 1.856629 ACTCCCTCCGTTCCGAATTA 58.143 50.000 0.00 0.00 0.00 1.40
374 498 1.479730 ACTCCCTCCGTTCCGAATTAC 59.520 52.381 0.00 0.00 0.00 1.89
375 499 1.755380 CTCCCTCCGTTCCGAATTACT 59.245 52.381 0.00 0.00 0.00 2.24
376 500 2.167900 CTCCCTCCGTTCCGAATTACTT 59.832 50.000 0.00 0.00 0.00 2.24
377 501 2.093869 TCCCTCCGTTCCGAATTACTTG 60.094 50.000 0.00 0.00 0.00 3.16
378 502 2.354403 CCCTCCGTTCCGAATTACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
379 503 2.928116 CCTCCGTTCCGAATTACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
380 504 2.597305 CTCCGTTCCGAATTACTTGTCG 59.403 50.000 0.00 0.00 37.01 4.35
381 505 1.060122 CCGTTCCGAATTACTTGTCGC 59.940 52.381 0.00 0.00 35.93 5.19
382 506 1.722464 CGTTCCGAATTACTTGTCGCA 59.278 47.619 0.00 0.00 35.93 5.10
383 507 2.471749 CGTTCCGAATTACTTGTCGCAC 60.472 50.000 0.00 0.00 35.93 5.34
384 508 1.342555 TCCGAATTACTTGTCGCACG 58.657 50.000 0.00 0.00 35.93 5.34
385 509 1.065358 CCGAATTACTTGTCGCACGT 58.935 50.000 0.00 0.00 35.93 4.49
386 510 2.095314 TCCGAATTACTTGTCGCACGTA 60.095 45.455 0.00 0.00 35.93 3.57
387 511 2.855963 CCGAATTACTTGTCGCACGTAT 59.144 45.455 0.00 0.00 35.93 3.06
388 512 3.301579 CCGAATTACTTGTCGCACGTATG 60.302 47.826 0.00 0.00 35.93 2.39
389 513 3.301579 CGAATTACTTGTCGCACGTATGG 60.302 47.826 0.00 0.00 0.00 2.74
390 514 3.513680 ATTACTTGTCGCACGTATGGA 57.486 42.857 0.00 0.00 0.00 3.41
391 515 3.513680 TTACTTGTCGCACGTATGGAT 57.486 42.857 0.00 0.00 0.00 3.41
392 516 1.640428 ACTTGTCGCACGTATGGATG 58.360 50.000 0.00 0.00 0.00 3.51
393 517 1.067142 ACTTGTCGCACGTATGGATGT 60.067 47.619 0.00 0.00 0.00 3.06
394 518 2.164827 ACTTGTCGCACGTATGGATGTA 59.835 45.455 0.00 0.00 0.00 2.29
395 519 3.181479 ACTTGTCGCACGTATGGATGTAT 60.181 43.478 0.00 0.00 0.00 2.29
396 520 3.007979 TGTCGCACGTATGGATGTATC 57.992 47.619 0.00 0.00 0.00 2.24
397 521 2.621526 TGTCGCACGTATGGATGTATCT 59.378 45.455 0.00 0.00 0.00 1.98
398 522 3.816523 TGTCGCACGTATGGATGTATCTA 59.183 43.478 0.00 0.00 0.00 1.98
399 523 4.083484 TGTCGCACGTATGGATGTATCTAG 60.083 45.833 0.00 0.00 0.00 2.43
400 524 4.153655 GTCGCACGTATGGATGTATCTAGA 59.846 45.833 0.00 0.00 0.00 2.43
401 525 4.941873 TCGCACGTATGGATGTATCTAGAT 59.058 41.667 10.73 10.73 0.00 1.98
402 526 5.030936 CGCACGTATGGATGTATCTAGATG 58.969 45.833 15.79 0.00 0.00 2.90
403 527 5.392057 CGCACGTATGGATGTATCTAGATGT 60.392 44.000 15.79 1.25 30.36 3.06
404 528 6.183360 CGCACGTATGGATGTATCTAGATGTA 60.183 42.308 15.79 4.44 29.44 2.29
405 529 7.467403 CGCACGTATGGATGTATCTAGATGTAT 60.467 40.741 15.79 9.11 29.44 2.29
406 530 8.191446 GCACGTATGGATGTATCTAGATGTATT 58.809 37.037 15.79 0.00 29.44 1.89
434 558 8.450578 AATTTTAGATACATCCATTTCAGCGA 57.549 30.769 0.00 0.00 0.00 4.93
435 559 6.844696 TTTAGATACATCCATTTCAGCGAC 57.155 37.500 0.00 0.00 0.00 5.19
436 560 3.384668 AGATACATCCATTTCAGCGACG 58.615 45.455 0.00 0.00 0.00 5.12
437 561 2.951457 TACATCCATTTCAGCGACGA 57.049 45.000 0.00 0.00 0.00 4.20
438 562 1.645034 ACATCCATTTCAGCGACGAG 58.355 50.000 0.00 0.00 0.00 4.18
439 563 1.066858 ACATCCATTTCAGCGACGAGT 60.067 47.619 0.00 0.00 0.00 4.18
440 564 2.165641 ACATCCATTTCAGCGACGAGTA 59.834 45.455 0.00 0.00 0.00 2.59
441 565 3.186909 CATCCATTTCAGCGACGAGTAA 58.813 45.455 0.00 0.00 0.00 2.24
442 566 3.520290 TCCATTTCAGCGACGAGTAAT 57.480 42.857 0.00 0.00 0.00 1.89
443 567 3.857052 TCCATTTCAGCGACGAGTAATT 58.143 40.909 0.00 0.00 0.00 1.40
444 568 4.250464 TCCATTTCAGCGACGAGTAATTT 58.750 39.130 0.00 0.00 0.00 1.82
445 569 4.092821 TCCATTTCAGCGACGAGTAATTTG 59.907 41.667 0.00 0.00 0.00 2.32
446 570 4.334443 CATTTCAGCGACGAGTAATTTGG 58.666 43.478 0.00 0.00 0.00 3.28
447 571 3.306917 TTCAGCGACGAGTAATTTGGA 57.693 42.857 0.00 0.00 0.00 3.53
448 572 3.306917 TCAGCGACGAGTAATTTGGAA 57.693 42.857 0.00 0.00 0.00 3.53
449 573 2.991190 TCAGCGACGAGTAATTTGGAAC 59.009 45.455 0.00 0.00 0.00 3.62
450 574 1.990563 AGCGACGAGTAATTTGGAACG 59.009 47.619 0.00 0.00 0.00 3.95
451 575 1.060122 GCGACGAGTAATTTGGAACGG 59.940 52.381 0.00 0.00 0.00 4.44
452 576 2.598589 CGACGAGTAATTTGGAACGGA 58.401 47.619 0.00 0.00 0.00 4.69
453 577 2.597305 CGACGAGTAATTTGGAACGGAG 59.403 50.000 0.00 0.00 0.00 4.63
454 578 2.928116 GACGAGTAATTTGGAACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
455 579 2.277084 CGAGTAATTTGGAACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
456 580 2.093869 CGAGTAATTTGGAACGGAGGGA 60.094 50.000 0.00 0.00 0.00 4.20
457 581 3.532542 GAGTAATTTGGAACGGAGGGAG 58.467 50.000 0.00 0.00 0.00 4.30
458 582 2.910977 AGTAATTTGGAACGGAGGGAGT 59.089 45.455 0.00 0.00 0.00 3.85
459 583 4.098894 AGTAATTTGGAACGGAGGGAGTA 58.901 43.478 0.00 0.00 0.00 2.59
460 584 4.720273 AGTAATTTGGAACGGAGGGAGTAT 59.280 41.667 0.00 0.00 0.00 2.12
461 585 5.901276 AGTAATTTGGAACGGAGGGAGTATA 59.099 40.000 0.00 0.00 0.00 1.47
462 586 5.906772 AATTTGGAACGGAGGGAGTATAT 57.093 39.130 0.00 0.00 0.00 0.86
463 587 7.731688 AGTAATTTGGAACGGAGGGAGTATATA 59.268 37.037 0.00 0.00 0.00 0.86
464 588 5.796424 TTTGGAACGGAGGGAGTATATAC 57.204 43.478 4.60 4.60 0.00 1.47
465 589 4.458256 TGGAACGGAGGGAGTATATACA 57.542 45.455 15.18 0.00 0.00 2.29
468 592 5.069516 TGGAACGGAGGGAGTATATACAAAC 59.930 44.000 15.18 6.03 0.00 2.93
470 594 6.407299 GGAACGGAGGGAGTATATACAAACAA 60.407 42.308 15.18 0.00 0.00 2.83
474 598 8.877195 ACGGAGGGAGTATATACAAACAATTAT 58.123 33.333 15.18 0.00 0.00 1.28
488 612 7.312899 ACAAACAATTATGAATCGAGGGAAAC 58.687 34.615 0.00 0.00 0.00 2.78
496 620 3.813166 TGAATCGAGGGAAACAAGTGTTC 59.187 43.478 0.00 0.00 37.25 3.18
497 621 2.992124 TCGAGGGAAACAAGTGTTCA 57.008 45.000 0.00 0.00 37.25 3.18
498 622 3.269538 TCGAGGGAAACAAGTGTTCAA 57.730 42.857 0.00 0.00 37.25 2.69
598 722 2.603075 CCAGGGAAAGGGATTTCACA 57.397 50.000 5.82 0.00 36.83 3.58
599 723 2.450476 CCAGGGAAAGGGATTTCACAG 58.550 52.381 5.82 0.00 36.83 3.66
600 724 2.225117 CCAGGGAAAGGGATTTCACAGT 60.225 50.000 5.82 0.00 36.83 3.55
601 725 2.821969 CAGGGAAAGGGATTTCACAGTG 59.178 50.000 5.82 0.00 36.83 3.66
605 729 5.491078 AGGGAAAGGGATTTCACAGTGTATA 59.509 40.000 0.00 0.00 36.83 1.47
606 730 6.160459 AGGGAAAGGGATTTCACAGTGTATAT 59.840 38.462 0.00 0.00 36.83 0.86
607 731 7.349859 AGGGAAAGGGATTTCACAGTGTATATA 59.650 37.037 0.00 0.00 36.83 0.86
608 732 8.164070 GGGAAAGGGATTTCACAGTGTATATAT 58.836 37.037 0.00 0.00 34.59 0.86
609 733 9.574516 GGAAAGGGATTTCACAGTGTATATATT 57.425 33.333 0.00 0.00 32.77 1.28
614 738 9.654663 GGGATTTCACAGTGTATATATTACTCC 57.345 37.037 0.00 0.00 0.00 3.85
615 739 9.654663 GGATTTCACAGTGTATATATTACTCCC 57.345 37.037 0.00 0.00 0.00 4.30
618 742 8.418597 TTCACAGTGTATATATTACTCCCTCC 57.581 38.462 0.00 0.00 0.00 4.30
619 743 6.657966 TCACAGTGTATATATTACTCCCTCCG 59.342 42.308 0.00 0.00 0.00 4.63
620 744 6.433404 CACAGTGTATATATTACTCCCTCCGT 59.567 42.308 0.00 0.00 0.00 4.69
621 745 7.008941 ACAGTGTATATATTACTCCCTCCGTT 58.991 38.462 0.00 0.00 0.00 4.44
622 746 7.508296 ACAGTGTATATATTACTCCCTCCGTTT 59.492 37.037 0.00 0.00 0.00 3.60
623 747 8.027771 CAGTGTATATATTACTCCCTCCGTTTC 58.972 40.741 0.00 0.00 0.00 2.78
624 748 7.949006 AGTGTATATATTACTCCCTCCGTTTCT 59.051 37.037 0.00 0.00 0.00 2.52
625 749 9.236006 GTGTATATATTACTCCCTCCGTTTCTA 57.764 37.037 0.00 0.00 0.00 2.10
626 750 9.812347 TGTATATATTACTCCCTCCGTTTCTAA 57.188 33.333 0.00 0.00 0.00 2.10
631 755 6.855763 TTACTCCCTCCGTTTCTAAATACA 57.144 37.500 0.00 0.00 0.00 2.29
632 756 5.750352 ACTCCCTCCGTTTCTAAATACAA 57.250 39.130 0.00 0.00 0.00 2.41
633 757 5.731591 ACTCCCTCCGTTTCTAAATACAAG 58.268 41.667 0.00 0.00 0.00 3.16
634 758 5.247792 ACTCCCTCCGTTTCTAAATACAAGT 59.752 40.000 0.00 0.00 0.00 3.16
635 759 5.727434 TCCCTCCGTTTCTAAATACAAGTC 58.273 41.667 0.00 0.00 0.00 3.01
636 760 5.482878 TCCCTCCGTTTCTAAATACAAGTCT 59.517 40.000 0.00 0.00 0.00 3.24
637 761 6.013984 TCCCTCCGTTTCTAAATACAAGTCTT 60.014 38.462 0.00 0.00 0.00 3.01
638 762 6.653740 CCCTCCGTTTCTAAATACAAGTCTTT 59.346 38.462 0.00 0.00 0.00 2.52
639 763 7.174426 CCCTCCGTTTCTAAATACAAGTCTTTT 59.826 37.037 0.00 0.00 0.00 2.27
640 764 8.565416 CCTCCGTTTCTAAATACAAGTCTTTTT 58.435 33.333 0.00 0.00 0.00 1.94
686 810 9.151471 ACATACGGATGTATATAGACATTTTGC 57.849 33.333 12.79 1.96 44.77 3.68
687 811 9.371136 CATACGGATGTATATAGACATTTTGCT 57.629 33.333 13.94 0.00 40.18 3.91
688 812 7.891183 ACGGATGTATATAGACATTTTGCTC 57.109 36.000 13.94 1.71 40.18 4.26
689 813 6.874134 ACGGATGTATATAGACATTTTGCTCC 59.126 38.462 13.94 9.42 40.18 4.70
690 814 6.873605 CGGATGTATATAGACATTTTGCTCCA 59.126 38.462 13.94 0.00 40.18 3.86
691 815 7.550551 CGGATGTATATAGACATTTTGCTCCAT 59.449 37.037 13.94 0.00 40.18 3.41
692 816 9.890629 GGATGTATATAGACATTTTGCTCCATA 57.109 33.333 13.94 0.00 40.18 2.74
700 824 6.058183 AGACATTTTGCTCCATATGTAGTCC 58.942 40.000 1.24 0.00 31.76 3.85
707 831 6.933514 TGCTCCATATGTAGTCCATATTGA 57.066 37.500 1.24 0.00 42.87 2.57
742 866 9.907229 AAAAGACTTATATTTAGGAACAGAGGG 57.093 33.333 0.00 0.00 0.00 4.30
743 867 8.855804 AAGACTTATATTTAGGAACAGAGGGA 57.144 34.615 0.00 0.00 0.00 4.20
819 946 5.309323 TGCATTTGTTTAGCATACTGGAC 57.691 39.130 0.00 0.00 32.55 4.02
1103 1241 1.661341 GATACCTTGCTGGCACTCAG 58.339 55.000 0.00 0.00 46.03 3.35
1140 1278 2.821366 CAAGGTGCCCTAGCTGCG 60.821 66.667 0.00 0.00 40.80 5.18
1372 1510 4.508124 GGCTACAACATCTCAACTTATCCG 59.492 45.833 0.00 0.00 0.00 4.18
1386 1524 3.689649 ACTTATCCGGCAATTCACTTGAC 59.310 43.478 0.00 0.00 39.73 3.18
1444 1582 2.879002 TGAGAGCATCGATCTTGACC 57.121 50.000 0.00 0.00 42.67 4.02
1677 1815 1.228124 TGAAAACCACCTCGCAGGG 60.228 57.895 7.06 0.00 40.58 4.45
2244 2382 5.410924 GGAAGGCTAAATTTGCTACAAAGG 58.589 41.667 0.00 0.00 0.00 3.11
2290 2428 1.565759 CAGGGTTCATTCCATCCTCCA 59.434 52.381 0.00 0.00 0.00 3.86
2298 2436 3.468244 TCATTCCATCCTCCATTGGGAAT 59.532 43.478 2.09 0.00 46.42 3.01
2307 2445 2.549754 CTCCATTGGGAATATGACACGC 59.450 50.000 2.09 0.00 44.38 5.34
2316 2454 4.304939 GGAATATGACACGCCTACTAACC 58.695 47.826 0.00 0.00 0.00 2.85
2397 2535 5.277683 CCAGGAGATAACTGCAATCGATTTG 60.278 44.000 8.21 5.62 36.93 2.32
2504 2642 2.241176 ACTTTGTTGGTCCTCTTCCACA 59.759 45.455 0.00 0.00 34.45 4.17
2525 2663 3.213206 TGAAATTGGCAGTCTGACAGT 57.787 42.857 8.75 2.58 36.33 3.55
2629 2767 3.054361 ACTCATGTTGGACCATAACTCCC 60.054 47.826 0.00 0.00 0.00 4.30
3065 3206 2.088423 TGTGGTGCTTGTTTTCTTCGT 58.912 42.857 0.00 0.00 0.00 3.85
3696 3840 2.937994 CGGAGCAGCTGATTAATTCG 57.062 50.000 20.43 7.97 0.00 3.34
3778 3931 6.539649 TTCTAACATTACACTCTGCAACAC 57.460 37.500 0.00 0.00 0.00 3.32
3941 4100 1.334160 TGCTCAGAGACGGGTTAACA 58.666 50.000 8.10 0.00 0.00 2.41
4055 4214 1.236616 TGCAGGATGGAAGCAACACG 61.237 55.000 0.00 0.00 34.97 4.49
4516 4854 2.209838 CGGATACAAGTCGCATCTGT 57.790 50.000 0.00 0.00 0.00 3.41
4592 4930 4.858850 TGCATTTGAGTTGGGATGTATCT 58.141 39.130 0.00 0.00 0.00 1.98
4597 4935 3.724478 TGAGTTGGGATGTATCTGACCT 58.276 45.455 0.00 0.00 0.00 3.85
4819 5162 6.295249 TCACAACACCATCTCAAGTGAAATA 58.705 36.000 0.00 0.00 37.43 1.40
4892 5235 0.909623 AGATTAGGAACCCCACGTGG 59.090 55.000 28.26 28.26 33.88 4.94
4917 5260 7.819900 GGACTACCTGGCATATAATTAAGACAG 59.180 40.741 10.33 10.33 0.00 3.51
5117 5461 1.714794 AGCGGATGAACTTGTTCTCG 58.285 50.000 13.65 14.16 0.00 4.04
5198 5542 1.727335 GCAAGCACTTCCTTCGAGTAC 59.273 52.381 0.00 0.00 0.00 2.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 0.108804 GGAAACTCGACGAGGCATGA 60.109 55.000 27.39 0.00 33.35 3.07
45 46 3.078837 GTTCCCCTACAGAAAAATGCGA 58.921 45.455 0.00 0.00 0.00 5.10
46 47 3.081804 AGTTCCCCTACAGAAAAATGCG 58.918 45.455 0.00 0.00 0.00 4.73
50 51 6.546034 CAGAAGAAAGTTCCCCTACAGAAAAA 59.454 38.462 0.00 0.00 0.00 1.94
51 52 6.062095 CAGAAGAAAGTTCCCCTACAGAAAA 58.938 40.000 0.00 0.00 0.00 2.29
131 136 1.493772 GTAACTGTGCACACGCTACA 58.506 50.000 17.42 0.00 39.64 2.74
193 198 0.249911 GATCCGCCCGCTTCTGTATT 60.250 55.000 0.00 0.00 0.00 1.89
216 230 5.991606 TCGATAATCTGCTTTCCACCTTATG 59.008 40.000 0.00 0.00 0.00 1.90
217 231 6.174720 TCGATAATCTGCTTTCCACCTTAT 57.825 37.500 0.00 0.00 0.00 1.73
218 232 5.453339 CCTCGATAATCTGCTTTCCACCTTA 60.453 44.000 0.00 0.00 0.00 2.69
221 235 3.134458 CCTCGATAATCTGCTTTCCACC 58.866 50.000 0.00 0.00 0.00 4.61
222 236 4.060038 TCCTCGATAATCTGCTTTCCAC 57.940 45.455 0.00 0.00 0.00 4.02
225 239 6.216569 TGTGTATCCTCGATAATCTGCTTTC 58.783 40.000 0.00 0.00 0.00 2.62
230 244 5.713792 ACCTGTGTATCCTCGATAATCTG 57.286 43.478 0.00 0.00 0.00 2.90
232 246 6.085555 TGAACCTGTGTATCCTCGATAATC 57.914 41.667 0.00 0.00 0.00 1.75
233 247 5.598830 ACTGAACCTGTGTATCCTCGATAAT 59.401 40.000 0.00 0.00 0.00 1.28
239 253 8.638629 ACTATATACTGAACCTGTGTATCCTC 57.361 38.462 0.00 0.00 0.00 3.71
250 264 8.474710 TCCCTGTTCTAACTATATACTGAACC 57.525 38.462 0.00 0.00 34.63 3.62
325 445 2.564947 AGAGTCGATCCTTGTGCTTCTT 59.435 45.455 0.00 0.00 0.00 2.52
363 487 2.471749 CGTGCGACAAGTAATTCGGAAC 60.472 50.000 0.00 0.00 37.32 3.62
364 488 1.722464 CGTGCGACAAGTAATTCGGAA 59.278 47.619 0.00 0.00 37.32 4.30
365 489 1.336148 ACGTGCGACAAGTAATTCGGA 60.336 47.619 0.00 0.00 35.73 4.55
366 490 1.065358 ACGTGCGACAAGTAATTCGG 58.935 50.000 0.00 0.00 35.73 4.30
367 491 3.301579 CCATACGTGCGACAAGTAATTCG 60.302 47.826 0.00 0.00 32.82 3.34
368 492 3.861113 TCCATACGTGCGACAAGTAATTC 59.139 43.478 0.00 0.00 32.82 2.17
369 493 3.852286 TCCATACGTGCGACAAGTAATT 58.148 40.909 0.00 0.00 32.82 1.40
370 494 3.513680 TCCATACGTGCGACAAGTAAT 57.486 42.857 0.00 0.00 32.82 1.89
371 495 3.183754 CATCCATACGTGCGACAAGTAA 58.816 45.455 0.00 0.00 32.82 2.24
372 496 2.164827 ACATCCATACGTGCGACAAGTA 59.835 45.455 0.00 7.72 33.49 2.24
373 497 1.067142 ACATCCATACGTGCGACAAGT 60.067 47.619 0.00 0.00 0.00 3.16
374 498 1.640428 ACATCCATACGTGCGACAAG 58.360 50.000 0.00 0.00 0.00 3.16
375 499 2.943449 TACATCCATACGTGCGACAA 57.057 45.000 0.00 0.00 0.00 3.18
376 500 2.621526 AGATACATCCATACGTGCGACA 59.378 45.455 0.00 0.00 0.00 4.35
377 501 3.284323 AGATACATCCATACGTGCGAC 57.716 47.619 0.00 0.00 0.00 5.19
378 502 4.320870 TCTAGATACATCCATACGTGCGA 58.679 43.478 0.00 0.00 0.00 5.10
379 503 4.680171 TCTAGATACATCCATACGTGCG 57.320 45.455 0.00 0.00 0.00 5.34
380 504 5.955488 ACATCTAGATACATCCATACGTGC 58.045 41.667 4.54 0.00 0.00 5.34
408 532 9.554395 TCGCTGAAATGGATGTATCTAAAATTA 57.446 29.630 0.00 0.00 0.00 1.40
409 533 8.345565 GTCGCTGAAATGGATGTATCTAAAATT 58.654 33.333 0.00 0.00 0.00 1.82
410 534 7.307396 CGTCGCTGAAATGGATGTATCTAAAAT 60.307 37.037 0.00 0.00 0.00 1.82
411 535 6.019075 CGTCGCTGAAATGGATGTATCTAAAA 60.019 38.462 0.00 0.00 0.00 1.52
412 536 5.462068 CGTCGCTGAAATGGATGTATCTAAA 59.538 40.000 0.00 0.00 0.00 1.85
413 537 4.982295 CGTCGCTGAAATGGATGTATCTAA 59.018 41.667 0.00 0.00 0.00 2.10
414 538 4.277423 TCGTCGCTGAAATGGATGTATCTA 59.723 41.667 0.00 0.00 0.00 1.98
415 539 3.068165 TCGTCGCTGAAATGGATGTATCT 59.932 43.478 0.00 0.00 0.00 1.98
416 540 3.381045 TCGTCGCTGAAATGGATGTATC 58.619 45.455 0.00 0.00 0.00 2.24
417 541 3.181475 ACTCGTCGCTGAAATGGATGTAT 60.181 43.478 0.00 0.00 0.00 2.29
418 542 2.165641 ACTCGTCGCTGAAATGGATGTA 59.834 45.455 0.00 0.00 0.00 2.29
419 543 1.066858 ACTCGTCGCTGAAATGGATGT 60.067 47.619 0.00 0.00 0.00 3.06
420 544 1.645034 ACTCGTCGCTGAAATGGATG 58.355 50.000 0.00 0.00 0.00 3.51
421 545 3.520290 TTACTCGTCGCTGAAATGGAT 57.480 42.857 0.00 0.00 0.00 3.41
422 546 3.520290 ATTACTCGTCGCTGAAATGGA 57.480 42.857 0.00 0.00 0.00 3.41
423 547 4.334443 CAAATTACTCGTCGCTGAAATGG 58.666 43.478 0.00 0.00 0.00 3.16
424 548 4.092821 TCCAAATTACTCGTCGCTGAAATG 59.907 41.667 0.00 0.00 0.00 2.32
425 549 4.250464 TCCAAATTACTCGTCGCTGAAAT 58.750 39.130 0.00 0.00 0.00 2.17
426 550 3.655486 TCCAAATTACTCGTCGCTGAAA 58.345 40.909 0.00 0.00 0.00 2.69
427 551 3.306917 TCCAAATTACTCGTCGCTGAA 57.693 42.857 0.00 0.00 0.00 3.02
428 552 2.991190 GTTCCAAATTACTCGTCGCTGA 59.009 45.455 0.00 0.00 0.00 4.26
429 553 2.222508 CGTTCCAAATTACTCGTCGCTG 60.223 50.000 0.00 0.00 0.00 5.18
430 554 1.990563 CGTTCCAAATTACTCGTCGCT 59.009 47.619 0.00 0.00 0.00 4.93
431 555 1.060122 CCGTTCCAAATTACTCGTCGC 59.940 52.381 0.00 0.00 0.00 5.19
432 556 2.597305 CTCCGTTCCAAATTACTCGTCG 59.403 50.000 0.00 0.00 0.00 5.12
433 557 2.928116 CCTCCGTTCCAAATTACTCGTC 59.072 50.000 0.00 0.00 0.00 4.20
434 558 2.354403 CCCTCCGTTCCAAATTACTCGT 60.354 50.000 0.00 0.00 0.00 4.18
435 559 2.093869 TCCCTCCGTTCCAAATTACTCG 60.094 50.000 0.00 0.00 0.00 4.18
436 560 3.055312 ACTCCCTCCGTTCCAAATTACTC 60.055 47.826 0.00 0.00 0.00 2.59
437 561 2.910977 ACTCCCTCCGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
438 562 3.345508 ACTCCCTCCGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
439 563 7.510001 TGTATATACTCCCTCCGTTCCAAATTA 59.490 37.037 13.89 0.00 0.00 1.40
440 564 5.906772 ATATACTCCCTCCGTTCCAAATT 57.093 39.130 0.00 0.00 0.00 1.82
441 565 5.842328 TGTATATACTCCCTCCGTTCCAAAT 59.158 40.000 13.89 0.00 0.00 2.32
442 566 5.210430 TGTATATACTCCCTCCGTTCCAAA 58.790 41.667 13.89 0.00 0.00 3.28
443 567 4.806892 TGTATATACTCCCTCCGTTCCAA 58.193 43.478 13.89 0.00 0.00 3.53
444 568 4.458256 TGTATATACTCCCTCCGTTCCA 57.542 45.455 13.89 0.00 0.00 3.53
445 569 5.069516 TGTTTGTATATACTCCCTCCGTTCC 59.930 44.000 13.89 0.00 0.00 3.62
446 570 6.152932 TGTTTGTATATACTCCCTCCGTTC 57.847 41.667 13.89 0.00 0.00 3.95
447 571 6.549433 TTGTTTGTATATACTCCCTCCGTT 57.451 37.500 13.89 0.00 0.00 4.44
448 572 6.742559 ATTGTTTGTATATACTCCCTCCGT 57.257 37.500 13.89 0.00 0.00 4.69
449 573 9.151471 CATAATTGTTTGTATATACTCCCTCCG 57.849 37.037 13.89 0.00 0.00 4.63
460 584 9.839817 TTCCCTCGATTCATAATTGTTTGTATA 57.160 29.630 0.00 0.00 0.00 1.47
461 585 8.746052 TTCCCTCGATTCATAATTGTTTGTAT 57.254 30.769 0.00 0.00 0.00 2.29
462 586 8.455682 GTTTCCCTCGATTCATAATTGTTTGTA 58.544 33.333 0.00 0.00 0.00 2.41
463 587 7.040062 TGTTTCCCTCGATTCATAATTGTTTGT 60.040 33.333 0.00 0.00 0.00 2.83
464 588 7.312154 TGTTTCCCTCGATTCATAATTGTTTG 58.688 34.615 0.00 0.00 0.00 2.93
465 589 7.461182 TGTTTCCCTCGATTCATAATTGTTT 57.539 32.000 0.00 0.00 0.00 2.83
468 592 6.968904 CACTTGTTTCCCTCGATTCATAATTG 59.031 38.462 0.00 0.00 0.00 2.32
470 594 6.180472 ACACTTGTTTCCCTCGATTCATAAT 58.820 36.000 0.00 0.00 0.00 1.28
474 598 3.485463 ACACTTGTTTCCCTCGATTCA 57.515 42.857 0.00 0.00 0.00 2.57
498 622 7.667219 TGCTATTCTCCTTTCTGTGAGATTTTT 59.333 33.333 0.00 0.00 37.46 1.94
597 721 7.463961 AACGGAGGGAGTAATATATACACTG 57.536 40.000 4.96 0.00 0.00 3.66
598 722 7.949006 AGAAACGGAGGGAGTAATATATACACT 59.051 37.037 0.63 0.63 0.00 3.55
599 723 8.120140 AGAAACGGAGGGAGTAATATATACAC 57.880 38.462 0.00 0.00 0.00 2.90
600 724 9.812347 TTAGAAACGGAGGGAGTAATATATACA 57.188 33.333 0.00 0.00 0.00 2.29
605 729 9.151177 TGTATTTAGAAACGGAGGGAGTAATAT 57.849 33.333 0.00 0.00 0.00 1.28
606 730 8.537728 TGTATTTAGAAACGGAGGGAGTAATA 57.462 34.615 0.00 0.00 0.00 0.98
607 731 7.427989 TGTATTTAGAAACGGAGGGAGTAAT 57.572 36.000 0.00 0.00 0.00 1.89
608 732 6.855763 TGTATTTAGAAACGGAGGGAGTAA 57.144 37.500 0.00 0.00 0.00 2.24
609 733 6.438425 ACTTGTATTTAGAAACGGAGGGAGTA 59.562 38.462 0.00 0.00 0.00 2.59
610 734 5.247792 ACTTGTATTTAGAAACGGAGGGAGT 59.752 40.000 0.00 0.00 0.00 3.85
611 735 5.731591 ACTTGTATTTAGAAACGGAGGGAG 58.268 41.667 0.00 0.00 0.00 4.30
612 736 5.482878 AGACTTGTATTTAGAAACGGAGGGA 59.517 40.000 0.00 0.00 0.00 4.20
613 737 5.731591 AGACTTGTATTTAGAAACGGAGGG 58.268 41.667 0.00 0.00 0.00 4.30
614 738 7.668525 AAAGACTTGTATTTAGAAACGGAGG 57.331 36.000 0.00 0.00 0.00 4.30
661 785 9.371136 AGCAAAATGTCTATATACATCCGTATG 57.629 33.333 4.38 0.00 39.16 2.39
662 786 9.587772 GAGCAAAATGTCTATATACATCCGTAT 57.412 33.333 4.38 0.00 39.16 3.06
663 787 8.033038 GGAGCAAAATGTCTATATACATCCGTA 58.967 37.037 4.38 0.00 39.16 4.02
664 788 6.874134 GGAGCAAAATGTCTATATACATCCGT 59.126 38.462 4.38 0.00 39.16 4.69
665 789 6.873605 TGGAGCAAAATGTCTATATACATCCG 59.126 38.462 4.38 0.00 39.16 4.18
666 790 8.798859 ATGGAGCAAAATGTCTATATACATCC 57.201 34.615 4.38 2.67 39.16 3.51
673 797 9.929180 GACTACATATGGAGCAAAATGTCTATA 57.071 33.333 15.30 0.00 34.54 1.31
674 798 7.880195 GGACTACATATGGAGCAAAATGTCTAT 59.120 37.037 15.30 0.00 34.54 1.98
675 799 7.147567 TGGACTACATATGGAGCAAAATGTCTA 60.148 37.037 15.30 0.00 34.54 2.59
676 800 6.058183 GGACTACATATGGAGCAAAATGTCT 58.942 40.000 15.30 0.00 34.54 3.41
677 801 5.822519 TGGACTACATATGGAGCAAAATGTC 59.177 40.000 15.30 3.90 34.54 3.06
678 802 5.754782 TGGACTACATATGGAGCAAAATGT 58.245 37.500 15.30 0.00 36.56 2.71
679 803 6.889301 ATGGACTACATATGGAGCAAAATG 57.111 37.500 15.30 0.00 38.26 2.32
733 857 6.096282 GCTATCATATACTCCTCCCTCTGTTC 59.904 46.154 0.00 0.00 0.00 3.18
737 861 5.494341 TCTGCTATCATATACTCCTCCCTCT 59.506 44.000 0.00 0.00 0.00 3.69
741 865 7.327214 CCTTTTCTGCTATCATATACTCCTCC 58.673 42.308 0.00 0.00 0.00 4.30
742 866 6.816140 GCCTTTTCTGCTATCATATACTCCTC 59.184 42.308 0.00 0.00 0.00 3.71
743 867 6.500049 AGCCTTTTCTGCTATCATATACTCCT 59.500 38.462 0.00 0.00 37.28 3.69
819 946 3.976793 ATTTGTCCATATGAAGCAGCG 57.023 42.857 3.65 0.00 0.00 5.18
1103 1241 0.678048 CTGGTTGCTTAGACCTGCCC 60.678 60.000 0.00 0.00 38.04 5.36
1108 1246 1.168714 CCTTGCTGGTTGCTTAGACC 58.831 55.000 0.00 0.00 43.37 3.85
1140 1278 5.560953 GCAGAAATCAGTAGTTGTGTTCCAC 60.561 44.000 0.00 0.00 34.56 4.02
1257 1395 3.982576 AACGTGAGGTTTCCAATTGAC 57.017 42.857 7.12 0.00 34.41 3.18
1335 1473 2.261345 TGTAGCCGAAATAAACGACCG 58.739 47.619 0.00 0.00 0.00 4.79
1386 1524 5.139435 TCAGGTCAGAGTTTACATCACTG 57.861 43.478 0.00 0.00 0.00 3.66
1399 1537 1.762370 TGTGCAGTTCTTCAGGTCAGA 59.238 47.619 0.00 0.00 0.00 3.27
1444 1582 4.488126 TTTCTCCTGTGAGCAAATTTCG 57.512 40.909 0.00 0.00 38.58 3.46
1677 1815 2.998316 AGAAAGCTGCAGGGATAGTC 57.002 50.000 17.12 0.00 0.00 2.59
1828 1966 3.442977 GCATTCACAAGAGAAGCTGGAAT 59.557 43.478 0.00 0.00 0.00 3.01
2290 2428 3.391296 AGTAGGCGTGTCATATTCCCAAT 59.609 43.478 0.00 0.00 0.00 3.16
2298 2436 3.022557 AGGGTTAGTAGGCGTGTCATA 57.977 47.619 0.00 0.00 0.00 2.15
2307 2445 2.561569 CATGCGGAAAGGGTTAGTAGG 58.438 52.381 0.00 0.00 0.00 3.18
2316 2454 0.322456 TGTTCCTCCATGCGGAAAGG 60.322 55.000 14.13 3.83 42.21 3.11
2397 2535 4.941263 TGACCTGTGAACTTATTGTATGCC 59.059 41.667 0.00 0.00 0.00 4.40
2504 2642 3.504906 CACTGTCAGACTGCCAATTTCAT 59.495 43.478 6.91 0.00 0.00 2.57
2525 2663 4.645535 AGAGAGATACAAGTTTGCAAGCA 58.354 39.130 16.04 0.00 0.00 3.91
3065 3206 8.322906 TCGAGCTTTTGATTTCTTTCTTATCA 57.677 30.769 0.00 0.00 0.00 2.15
3325 3466 0.907704 TGGCGGATCCTACCAAGTGT 60.908 55.000 18.43 0.00 35.26 3.55
3472 3613 1.241165 CCTTGCAGTTGCTGTGATGA 58.759 50.000 5.62 0.00 42.66 2.92
3696 3840 5.062528 CCTCTTATTCCAATGGAGCTCTTC 58.937 45.833 14.64 0.00 31.21 2.87
4055 4214 1.805120 GCATTGCTGCCATGTTCCATC 60.805 52.381 14.27 0.00 42.88 3.51
4296 4466 5.062558 CCACTACAAAGCAAATTAAGCATGC 59.937 40.000 10.51 10.51 40.34 4.06
4563 4901 5.999205 TCCCAACTCAAATGCAATACAAT 57.001 34.783 0.00 0.00 0.00 2.71
4592 4930 1.691976 AGAACAACATCGGACAGGTCA 59.308 47.619 1.41 0.00 0.00 4.02
4597 4935 3.469008 AGTCAAGAACAACATCGGACA 57.531 42.857 0.00 0.00 33.63 4.02
4659 4997 1.503294 TGCGCGTCATACAACAGAAA 58.497 45.000 8.43 0.00 0.00 2.52
4665 5003 0.871722 AAGCTTTGCGCGTCATACAA 59.128 45.000 8.43 0.00 45.59 2.41
4892 5235 8.585881 TCTGTCTTAATTATATGCCAGGTAGTC 58.414 37.037 0.00 0.00 0.00 2.59
4917 5260 6.326375 CCGAATATGGTGCTTATAGTCTCTC 58.674 44.000 0.00 0.00 0.00 3.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.