Multiple sequence alignment - TraesCS6B01G051600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G051600 chr6B 100.000 5028 0 0 1 5028 30715123 30720150 0.000000e+00 9286.0
1 TraesCS6B01G051600 chr6B 97.616 5033 78 9 1 5028 30858998 30863993 0.000000e+00 8591.0
2 TraesCS6B01G051600 chr6B 97.262 5041 91 10 1 5028 30794160 30799166 0.000000e+00 8501.0
3 TraesCS6B01G051600 chr6B 94.066 2595 118 18 1198 3762 31717039 31714451 0.000000e+00 3906.0
4 TraesCS6B01G051600 chr6B 92.456 1405 72 22 1727 3105 30874992 30876388 0.000000e+00 1977.0
5 TraesCS6B01G051600 chr6B 92.020 1416 77 13 1716 3105 30811661 30813066 0.000000e+00 1956.0
6 TraesCS6B01G051600 chr6B 97.456 1140 29 0 3889 5028 30814322 30815461 0.000000e+00 1945.0
7 TraesCS6B01G051600 chr6B 92.017 1403 76 13 1729 3105 30733015 30734407 0.000000e+00 1938.0
8 TraesCS6B01G051600 chr6B 97.288 1143 28 1 3889 5028 30735662 30736804 0.000000e+00 1936.0
9 TraesCS6B01G051600 chr6B 94.314 1231 63 5 3802 5028 31396162 31397389 0.000000e+00 1879.0
10 TraesCS6B01G051600 chr6B 91.797 1341 77 13 1737 3052 30644732 30646064 0.000000e+00 1836.0
11 TraesCS6B01G051600 chr6B 93.290 1237 56 3 3802 5028 31713962 31712743 0.000000e+00 1799.0
12 TraesCS6B01G051600 chr6B 92.770 1231 68 12 3802 5028 31361862 31363075 0.000000e+00 1760.0
13 TraesCS6B01G051600 chr6B 93.238 1183 67 9 2014 3190 31318640 31319815 0.000000e+00 1729.0
14 TraesCS6B01G051600 chr6B 92.984 1183 69 10 2014 3190 31332450 31333624 0.000000e+00 1712.0
15 TraesCS6B01G051600 chr6B 97.992 946 16 1 3802 4744 30877755 30878700 0.000000e+00 1639.0
16 TraesCS6B01G051600 chr6B 97.683 561 10 1 3889 4446 30654563 30655123 0.000000e+00 961.0
17 TraesCS6B01G051600 chr6B 97.683 561 10 1 3889 4446 30656384 30656944 0.000000e+00 961.0
18 TraesCS6B01G051600 chr6B 95.222 607 24 4 3200 3804 30734661 30735264 0.000000e+00 955.0
19 TraesCS6B01G051600 chr6B 95.222 607 24 4 3200 3804 30813321 30813924 0.000000e+00 955.0
20 TraesCS6B01G051600 chr6B 97.107 553 16 0 4476 5028 30648237 30648789 0.000000e+00 933.0
21 TraesCS6B01G051600 chr6B 94.399 607 29 4 3200 3804 30876643 30877246 0.000000e+00 928.0
22 TraesCS6B01G051600 chr6B 95.360 431 19 1 3373 3802 31358931 31359361 0.000000e+00 684.0
23 TraesCS6B01G051600 chr6B 92.781 471 30 2 242 708 620186651 620187121 0.000000e+00 678.0
24 TraesCS6B01G051600 chr6B 90.365 384 23 8 1198 1572 30873272 30873650 4.520000e-135 492.0
25 TraesCS6B01G051600 chr6B 90.365 384 22 8 1198 1572 30643183 30643560 1.630000e-134 490.0
26 TraesCS6B01G051600 chr6B 90.104 384 24 8 1198 1572 30731180 30731558 2.100000e-133 486.0
27 TraesCS6B01G051600 chr6B 90.104 384 23 9 1198 1572 30810125 30810502 7.570000e-133 484.0
28 TraesCS6B01G051600 chr6B 96.970 264 7 1 3540 3802 31393400 31393663 4.620000e-120 442.0
29 TraesCS6B01G051600 chr6B 97.959 245 5 0 1 245 30684265 30684509 4.650000e-115 425.0
30 TraesCS6B01G051600 chr6B 97.551 245 6 0 1 245 30670864 30671108 2.160000e-113 420.0
31 TraesCS6B01G051600 chr6B 94.757 267 9 4 3540 3804 30651813 30652076 1.300000e-110 411.0
32 TraesCS6B01G051600 chr6B 99.119 227 2 0 4802 5028 30878734 30878960 4.690000e-110 409.0
33 TraesCS6B01G051600 chr6B 96.386 249 8 1 1 249 623605951 623606198 4.690000e-110 409.0
34 TraesCS6B01G051600 chr6B 85.075 402 40 12 702 1086 31278294 31278692 4.720000e-105 392.0
35 TraesCS6B01G051600 chr6B 87.768 327 35 4 1700 2023 31331023 31331347 1.320000e-100 377.0
36 TraesCS6B01G051600 chr6B 91.139 237 16 4 1198 1434 31278966 31279197 2.920000e-82 316.0
37 TraesCS6B01G051600 chr6B 89.474 247 23 3 1429 1672 31330719 31330965 4.890000e-80 309.0
38 TraesCS6B01G051600 chr6B 96.067 178 7 0 3198 3375 31319868 31320045 1.770000e-74 291.0
39 TraesCS6B01G051600 chr6B 94.944 178 8 1 3198 3375 31333677 31333853 1.380000e-70 278.0
40 TraesCS6B01G051600 chr6B 82.222 315 37 10 702 1002 30638721 30639030 2.320000e-63 254.0
41 TraesCS6B01G051600 chr6B 92.571 175 13 0 3371 3545 31344239 31344413 8.360000e-63 252.0
42 TraesCS6B01G051600 chr6B 92.571 175 13 0 3371 3545 31372839 31373013 8.360000e-63 252.0
43 TraesCS6B01G051600 chr6B 80.952 315 41 9 702 1002 30805425 30805734 1.090000e-56 231.0
44 TraesCS6B01G051600 chr6B 84.772 197 30 0 977 1173 31717398 31717202 1.100000e-46 198.0
45 TraesCS6B01G051600 chr6B 81.124 249 39 6 849 1090 30872799 30873046 5.140000e-45 193.0
46 TraesCS6B01G051600 chr6B 88.889 117 8 3 3104 3215 30734520 30734636 6.790000e-29 139.0
47 TraesCS6B01G051600 chr6B 88.889 117 8 3 3104 3215 30813180 30813296 6.790000e-29 139.0
48 TraesCS6B01G051600 chr6B 88.889 117 8 3 3104 3215 30876502 30876618 6.790000e-29 139.0
49 TraesCS6B01G051600 chr6B 93.103 87 6 0 1562 1648 30644553 30644639 1.470000e-25 128.0
50 TraesCS6B01G051600 chr2B 94.612 464 19 3 245 702 41662957 41662494 0.000000e+00 713.0
51 TraesCS6B01G051600 chr2B 92.405 474 32 2 242 711 801188857 801189330 0.000000e+00 673.0
52 TraesCS6B01G051600 chr4B 94.384 463 22 4 242 702 244718716 244719176 0.000000e+00 708.0
53 TraesCS6B01G051600 chr4B 92.405 474 31 4 245 715 132554615 132554144 0.000000e+00 671.0
54 TraesCS6B01G051600 chr4B 97.189 249 6 1 1 249 416967246 416966999 2.160000e-113 420.0
55 TraesCS6B01G051600 chr5B 93.362 467 29 2 245 709 346309909 346309443 0.000000e+00 689.0
56 TraesCS6B01G051600 chr5B 97.967 246 5 0 1 246 554037830 554038075 1.290000e-115 427.0
57 TraesCS6B01G051600 chr1D 92.553 470 33 2 242 709 364113375 364113844 0.000000e+00 673.0
58 TraesCS6B01G051600 chr6A 80.402 796 83 24 3037 3804 18438416 18439166 5.730000e-149 538.0
59 TraesCS6B01G051600 chr6A 81.404 527 73 13 3802 4309 18439670 18440190 1.690000e-109 407.0
60 TraesCS6B01G051600 chr6A 78.767 438 77 11 4323 4758 18441491 18441914 3.830000e-71 279.0
61 TraesCS6B01G051600 chr6A 81.016 374 50 14 780 1143 18359883 18360245 1.380000e-70 278.0
62 TraesCS6B01G051600 chr6D 83.333 564 50 21 2296 2851 17490492 17491019 9.790000e-132 481.0
63 TraesCS6B01G051600 chr6D 89.205 352 34 4 1198 1547 17486105 17486454 2.150000e-118 436.0
64 TraesCS6B01G051600 chr6D 87.805 328 20 9 3496 3804 17821433 17821759 2.860000e-97 366.0
65 TraesCS6B01G051600 chr6D 82.258 434 58 11 3828 4259 17485956 17486372 1.720000e-94 357.0
66 TraesCS6B01G051600 chr6D 80.942 467 56 14 702 1155 17485478 17485924 6.240000e-89 339.0
67 TraesCS6B01G051600 chr6D 79.317 527 76 16 1778 2283 17486799 17487313 6.240000e-89 339.0
68 TraesCS6B01G051600 chr6D 83.562 365 48 10 3802 4157 17491904 17492265 1.040000e-86 331.0
69 TraesCS6B01G051600 chr6D 90.968 155 9 3 3650 3804 17491246 17491395 2.370000e-48 204.0
70 TraesCS6B01G051600 chr6D 93.204 103 7 0 702 804 17482729 17482831 8.720000e-33 152.0
71 TraesCS6B01G051600 chr7B 97.143 245 7 0 1 245 184008199 184008443 1.010000e-111 414.0
72 TraesCS6B01G051600 chr3B 94.656 262 12 2 1 261 372777091 372776831 6.060000e-109 405.0
73 TraesCS6B01G051600 chr3D 90.845 142 13 0 3892 4033 306073587 306073446 1.850000e-44 191.0
74 TraesCS6B01G051600 chr3D 90.566 53 5 0 1198 1250 306073502 306073450 2.510000e-08 71.3
75 TraesCS6B01G051600 chr5D 94.118 34 2 0 4452 4485 514031037 514031004 9.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G051600 chr6B 30715123 30720150 5027 False 9286.000000 9286 100.000000 1 5028 1 chr6B.!!$F4 5027
1 TraesCS6B01G051600 chr6B 30858998 30863993 4995 False 8591.000000 8591 97.616000 1 5028 1 chr6B.!!$F7 5027
2 TraesCS6B01G051600 chr6B 30794160 30799166 5006 False 8501.000000 8501 97.262000 1 5028 1 chr6B.!!$F5 5027
3 TraesCS6B01G051600 chr6B 31712743 31717398 4655 True 1967.666667 3906 90.709333 977 5028 3 chr6B.!!$R1 4051
4 TraesCS6B01G051600 chr6B 31358931 31363075 4144 False 1222.000000 1760 94.065000 3373 5028 2 chr6B.!!$F19 1655
5 TraesCS6B01G051600 chr6B 31393400 31397389 3989 False 1160.500000 1879 95.642000 3540 5028 2 chr6B.!!$F20 1488
6 TraesCS6B01G051600 chr6B 30810125 30815461 5336 False 1095.800000 1956 92.738200 1198 5028 5 chr6B.!!$F14 3830
7 TraesCS6B01G051600 chr6B 30731180 30736804 5624 False 1090.800000 1938 92.704000 1198 5028 5 chr6B.!!$F13 3830
8 TraesCS6B01G051600 chr6B 31318640 31320045 1405 False 1010.000000 1729 94.652500 2014 3375 2 chr6B.!!$F17 1361
9 TraesCS6B01G051600 chr6B 30872799 30878960 6161 False 825.285714 1977 92.049143 849 5028 7 chr6B.!!$F15 4179
10 TraesCS6B01G051600 chr6B 30643183 30656944 13761 False 817.142857 1836 94.642143 1198 5028 7 chr6B.!!$F12 3830
11 TraesCS6B01G051600 chr6B 31330719 31333853 3134 False 669.000000 1712 91.292500 1429 3375 4 chr6B.!!$F18 1946
12 TraesCS6B01G051600 chr6B 31278294 31279197 903 False 354.000000 392 88.107000 702 1434 2 chr6B.!!$F16 732
13 TraesCS6B01G051600 chr6A 18438416 18441914 3498 False 408.000000 538 80.191000 3037 4758 3 chr6A.!!$F2 1721
14 TraesCS6B01G051600 chr6D 17482729 17492265 9536 False 329.875000 481 85.348625 702 4259 8 chr6D.!!$F2 3557

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
831 3587 0.114364 TCTACCCACTCAGACTGGCA 59.886 55.000 1.81 0.0 0.0 4.92 F
1723 6927 0.250684 TGTTGCGGCATCCTTGAGAA 60.251 50.000 2.28 0.0 0.0 2.87 F
2507 12186 1.453928 GCATGGGGGAGTAGTTGGC 60.454 63.158 0.00 0.0 0.0 4.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2411 12083 0.109532 TTGTCTGGACATGCCCGAAA 59.890 50.000 4.19 0.0 41.52 3.46 R
3336 21761 1.300931 CCGAATGTCCCGCGATGAT 60.301 57.895 8.23 0.0 0.00 2.45 R
4182 27844 1.072159 ACAAGAGTGGTGCTGAGGC 59.928 57.895 0.00 0.0 39.26 4.70 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
74 75 7.310664 CCTTCCGCTGTTATCGTTATTAGATA 58.689 38.462 0.00 0.00 0.00 1.98
169 170 8.968969 ACTCTGTTATAAATCCTTCGAGTACTT 58.031 33.333 0.00 0.00 0.00 2.24
274 275 2.924757 TTTTTGCATGAACCATGGCA 57.075 40.000 13.04 2.49 41.64 4.92
275 276 2.924757 TTTTGCATGAACCATGGCAA 57.075 40.000 13.04 6.16 41.64 4.52
276 277 3.420300 TTTTGCATGAACCATGGCAAT 57.580 38.095 13.04 0.00 41.64 3.56
277 278 3.420300 TTTGCATGAACCATGGCAATT 57.580 38.095 13.04 0.00 41.64 2.32
278 279 3.420300 TTGCATGAACCATGGCAATTT 57.580 38.095 13.04 0.00 41.64 1.82
279 280 3.420300 TGCATGAACCATGGCAATTTT 57.580 38.095 13.04 0.00 41.64 1.82
280 281 4.548451 TGCATGAACCATGGCAATTTTA 57.452 36.364 13.04 0.00 41.64 1.52
281 282 4.903054 TGCATGAACCATGGCAATTTTAA 58.097 34.783 13.04 0.00 41.64 1.52
282 283 4.936411 TGCATGAACCATGGCAATTTTAAG 59.064 37.500 13.04 0.00 41.64 1.85
283 284 4.937015 GCATGAACCATGGCAATTTTAAGT 59.063 37.500 13.04 0.00 41.64 2.24
284 285 5.163834 GCATGAACCATGGCAATTTTAAGTG 60.164 40.000 13.04 0.00 41.64 3.16
638 639 1.399440 GCGGTGACATGTCGTAGTCTA 59.601 52.381 20.54 0.00 35.81 2.59
831 3587 0.114364 TCTACCCACTCAGACTGGCA 59.886 55.000 1.81 0.00 0.00 4.92
878 3634 3.202906 AGTTGGCGTCGCAACATATAAT 58.797 40.909 24.32 8.60 34.04 1.28
966 3742 3.548214 GCAACTCATACTCTATCGCGTGA 60.548 47.826 5.77 0.00 0.00 4.35
1032 3808 0.907704 AGGTGGCCAAGTGGATACGA 60.908 55.000 7.24 0.00 42.51 3.43
1593 6620 4.785453 GGCCTTCCTCCACCAGCG 62.785 72.222 0.00 0.00 0.00 5.18
1649 6756 0.256752 CAAGATCCCCTCATGGTGCA 59.743 55.000 0.00 0.00 0.00 4.57
1723 6927 0.250684 TGTTGCGGCATCCTTGAGAA 60.251 50.000 2.28 0.00 0.00 2.87
2415 12088 2.202298 GACGTGGCGGCAATTTCG 60.202 61.111 15.50 16.04 33.63 3.46
2507 12186 1.453928 GCATGGGGGAGTAGTTGGC 60.454 63.158 0.00 0.00 0.00 4.52
2706 12386 7.798071 TCCTTTGTATCGGTATTCCAAGTATT 58.202 34.615 0.00 0.00 0.00 1.89
3067 12750 7.114754 ACTATATCCATTGATCATTTGCCGAT 58.885 34.615 0.00 0.57 32.18 4.18
3336 21761 8.645730 TGTTATAAAAAGTATATGCCGAACGA 57.354 30.769 0.00 0.00 0.00 3.85
3423 22446 1.691976 TGGCGTCTTCTTTCTTCAGGA 59.308 47.619 0.00 0.00 0.00 3.86
3521 22562 0.605319 GTGACAATTGCCGAGTCCCA 60.605 55.000 5.05 0.00 0.00 4.37
3522 22563 0.109532 TGACAATTGCCGAGTCCCAA 59.890 50.000 5.05 0.00 0.00 4.12
4182 27844 9.627123 TGATTCAATCCCTAAAGTAGTAAATGG 57.373 33.333 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 2.705658 AGTGAGTCCATCAACTCCAACA 59.294 45.455 1.88 0.00 44.17 3.33
169 170 3.621268 GGATTAGTAATGCTGACACGCAA 59.379 43.478 7.11 0.00 44.06 4.85
261 262 5.163834 GCACTTAAAATTGCCATGGTTCATG 60.164 40.000 14.67 1.22 41.10 3.07
262 263 4.937015 GCACTTAAAATTGCCATGGTTCAT 59.063 37.500 14.67 0.00 32.21 2.57
263 264 4.202295 TGCACTTAAAATTGCCATGGTTCA 60.202 37.500 14.67 0.00 38.00 3.18
264 265 4.314121 TGCACTTAAAATTGCCATGGTTC 58.686 39.130 14.67 0.00 38.00 3.62
265 266 4.348863 TGCACTTAAAATTGCCATGGTT 57.651 36.364 14.67 1.29 38.00 3.67
266 267 4.255301 CATGCACTTAAAATTGCCATGGT 58.745 39.130 14.67 0.00 38.00 3.55
267 268 4.255301 ACATGCACTTAAAATTGCCATGG 58.745 39.130 7.63 7.63 38.00 3.66
268 269 6.757478 TGATACATGCACTTAAAATTGCCATG 59.243 34.615 0.00 8.43 38.00 3.66
269 270 6.876155 TGATACATGCACTTAAAATTGCCAT 58.124 32.000 0.00 0.00 38.00 4.40
270 271 6.278172 TGATACATGCACTTAAAATTGCCA 57.722 33.333 0.00 0.00 38.00 4.92
271 272 6.201425 CCATGATACATGCACTTAAAATTGCC 59.799 38.462 0.00 0.00 38.00 4.52
272 273 6.292488 GCCATGATACATGCACTTAAAATTGC 60.292 38.462 0.00 0.00 39.33 3.56
273 274 6.757478 TGCCATGATACATGCACTTAAAATTG 59.243 34.615 0.00 0.00 0.00 2.32
274 275 6.876155 TGCCATGATACATGCACTTAAAATT 58.124 32.000 0.00 0.00 0.00 1.82
275 276 6.468333 TGCCATGATACATGCACTTAAAAT 57.532 33.333 0.00 0.00 0.00 1.82
276 277 5.911378 TGCCATGATACATGCACTTAAAA 57.089 34.783 0.00 0.00 0.00 1.52
277 278 5.911378 TTGCCATGATACATGCACTTAAA 57.089 34.783 0.00 0.00 32.63 1.52
278 279 6.468333 AATTGCCATGATACATGCACTTAA 57.532 33.333 0.00 0.00 32.63 1.85
279 280 6.468333 AAATTGCCATGATACATGCACTTA 57.532 33.333 0.00 0.00 32.63 2.24
280 281 5.347620 AAATTGCCATGATACATGCACTT 57.652 34.783 0.00 6.23 32.63 3.16
281 282 5.347620 AAAATTGCCATGATACATGCACT 57.652 34.783 0.00 1.37 32.63 4.40
282 283 6.275335 ACTAAAATTGCCATGATACATGCAC 58.725 36.000 0.00 2.20 32.63 4.57
283 284 6.468333 ACTAAAATTGCCATGATACATGCA 57.532 33.333 0.00 0.00 0.00 3.96
284 285 7.775397 AAACTAAAATTGCCATGATACATGC 57.225 32.000 0.00 3.56 0.00 4.06
638 639 4.304110 CGACCACACGCCTTATAACATAT 58.696 43.478 0.00 0.00 0.00 1.78
831 3587 2.261052 GCACGAGCTGACTCTGCT 59.739 61.111 10.01 10.01 40.71 4.24
878 3634 3.385384 CCTCGTCTGGCCTGAGCA 61.385 66.667 13.36 1.41 42.56 4.26
966 3742 3.589988 AGCTGATTGAACGAACGATCTT 58.410 40.909 0.14 0.00 33.29 2.40
1032 3808 0.892755 TCCTCGACATGGTACGCTTT 59.107 50.000 0.00 0.00 0.00 3.51
1207 4160 1.950828 CGCATGAGGAAGAAGCAGAT 58.049 50.000 0.00 0.00 0.00 2.90
1488 4453 9.435688 TTCTGATCGAATAAGATTCACTCAAAA 57.564 29.630 0.00 0.00 0.00 2.44
1489 4454 9.605275 ATTCTGATCGAATAAGATTCACTCAAA 57.395 29.630 9.94 1.62 40.51 2.69
1593 6620 2.969238 CTGGACGATGATGCGGGC 60.969 66.667 0.00 0.00 35.12 6.13
1723 6927 1.006832 CGGCATCGAGAAATCCGTTT 58.993 50.000 0.00 0.00 39.00 3.60
1952 7338 3.070302 GCTCTCGAATATGAGGAAAGGGT 59.930 47.826 2.06 0.00 36.61 4.34
2031 8534 1.731613 GACACGTCACATTCCGCGA 60.732 57.895 8.23 0.00 0.00 5.87
2409 12081 1.271871 TGTCTGGACATGCCCGAAATT 60.272 47.619 0.00 0.00 36.21 1.82
2411 12083 0.109532 TTGTCTGGACATGCCCGAAA 59.890 50.000 4.19 0.00 41.52 3.46
2415 12088 1.678970 GGGTTGTCTGGACATGCCC 60.679 63.158 19.93 19.93 44.01 5.36
3067 12750 2.422597 CCATGTTTCCGAGTGCTACAA 58.577 47.619 0.00 0.00 0.00 2.41
3224 16477 2.979814 TGATCCCAGGTATTGTCACG 57.020 50.000 0.00 0.00 0.00 4.35
3336 21761 1.300931 CCGAATGTCCCGCGATGAT 60.301 57.895 8.23 0.00 0.00 2.45
3521 22562 6.590677 GCTTAGTACAACTCTCGGAAAAGATT 59.409 38.462 0.00 0.00 0.00 2.40
3522 22563 6.100668 GCTTAGTACAACTCTCGGAAAAGAT 58.899 40.000 0.00 0.00 0.00 2.40
4086 27745 8.190784 AGAAAAATGAACGAAGAAACACTCAAT 58.809 29.630 0.00 0.00 0.00 2.57
4182 27844 1.072159 ACAAGAGTGGTGCTGAGGC 59.928 57.895 0.00 0.00 39.26 4.70
4421 29377 2.158623 TGGTTAGTGCATGATGGATCCC 60.159 50.000 9.90 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.