Multiple sequence alignment - TraesCS6B01G050500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G050500 chr6B 100.000 2548 0 0 1 2548 30025956 30028503 0.000000e+00 4706
1 TraesCS6B01G050500 chr6A 97.778 1980 39 5 571 2548 617222871 617220895 0.000000e+00 3408
2 TraesCS6B01G050500 chr6A 97.343 1995 45 8 558 2548 533982338 533980348 0.000000e+00 3384
3 TraesCS6B01G050500 chr4A 97.533 1986 41 7 566 2548 36562908 36564888 0.000000e+00 3389
4 TraesCS6B01G050500 chr1B 97.573 1978 42 6 573 2548 42162338 42160365 0.000000e+00 3382
5 TraesCS6B01G050500 chr1B 98.261 230 3 1 343 572 169938335 169938107 3.950000e-108 401
6 TraesCS6B01G050500 chr1B 97.797 227 3 2 344 569 584797541 584797766 8.550000e-105 390
7 TraesCS6B01G050500 chrUn 97.576 1980 37 9 573 2548 175762113 175764085 0.000000e+00 3380
8 TraesCS6B01G050500 chrUn 99.119 227 2 0 343 569 255568137 255568363 2.360000e-110 409
9 TraesCS6B01G050500 chrUn 97.414 232 4 1 343 572 196162853 196162622 6.610000e-106 394
10 TraesCS6B01G050500 chr4B 97.523 1978 42 6 573 2548 578529982 578528010 0.000000e+00 3374
11 TraesCS6B01G050500 chr4B 99.559 227 0 1 343 569 664964424 664964649 1.820000e-111 412
12 TraesCS6B01G050500 chr4B 99.119 227 1 1 343 569 665023829 665024054 8.490000e-110 407
13 TraesCS6B01G050500 chr2B 97.337 1990 45 8 562 2548 776222951 776224935 0.000000e+00 3374
14 TraesCS6B01G050500 chr2B 97.429 1984 42 9 569 2548 781094236 781096214 0.000000e+00 3373
15 TraesCS6B01G050500 chr2B 98.276 232 1 2 341 569 70882286 70882517 1.100000e-108 403
16 TraesCS6B01G050500 chr2B 97.391 230 5 1 343 572 780152743 780152515 8.550000e-105 390
17 TraesCS6B01G050500 chr2A 97.335 1989 46 7 564 2548 751250585 751248600 0.000000e+00 3373
18 TraesCS6B01G050500 chr3B 98.696 230 3 0 343 572 63004842 63004613 2.360000e-110 409


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G050500 chr6B 30025956 30028503 2547 False 4706 4706 100.000 1 2548 1 chr6B.!!$F1 2547
1 TraesCS6B01G050500 chr6A 617220895 617222871 1976 True 3408 3408 97.778 571 2548 1 chr6A.!!$R2 1977
2 TraesCS6B01G050500 chr6A 533980348 533982338 1990 True 3384 3384 97.343 558 2548 1 chr6A.!!$R1 1990
3 TraesCS6B01G050500 chr4A 36562908 36564888 1980 False 3389 3389 97.533 566 2548 1 chr4A.!!$F1 1982
4 TraesCS6B01G050500 chr1B 42160365 42162338 1973 True 3382 3382 97.573 573 2548 1 chr1B.!!$R1 1975
5 TraesCS6B01G050500 chrUn 175762113 175764085 1972 False 3380 3380 97.576 573 2548 1 chrUn.!!$F1 1975
6 TraesCS6B01G050500 chr4B 578528010 578529982 1972 True 3374 3374 97.523 573 2548 1 chr4B.!!$R1 1975
7 TraesCS6B01G050500 chr2B 776222951 776224935 1984 False 3374 3374 97.337 562 2548 1 chr2B.!!$F2 1986
8 TraesCS6B01G050500 chr2B 781094236 781096214 1978 False 3373 3373 97.429 569 2548 1 chr2B.!!$F3 1979
9 TraesCS6B01G050500 chr2A 751248600 751250585 1985 True 3373 3373 97.335 564 2548 1 chr2A.!!$R1 1984

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
50 51 0.107831 TGCGTACAGTTTGGAGCCTT 59.892 50.0 0.0 0.0 0.0 4.35 F
55 56 0.178990 ACAGTTTGGAGCCTTGGACC 60.179 55.0 0.0 0.0 0.0 4.46 F
56 57 0.178992 CAGTTTGGAGCCTTGGACCA 60.179 55.0 0.0 0.0 0.0 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1135 1139 0.663269 CTCGCTGCACACGTAGAACA 60.663 55.000 0.0 0.0 0.00 3.18 R
1226 1230 1.200716 CATGTCACCTGCATGAACACC 59.799 52.381 0.0 0.0 44.60 4.16 R
1828 1833 1.970640 GCAAGAAAACCCCTGAATGGT 59.029 47.619 0.0 0.0 37.85 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 8.635877 TTTTTGACAATTTATGCGTACAGTTT 57.364 26.923 0.00 0.00 0.00 2.66
43 44 7.616103 TTTGACAATTTATGCGTACAGTTTG 57.384 32.000 0.00 0.00 0.00 2.93
44 45 5.694816 TGACAATTTATGCGTACAGTTTGG 58.305 37.500 0.00 0.00 0.00 3.28
45 46 5.470437 TGACAATTTATGCGTACAGTTTGGA 59.530 36.000 0.00 0.00 0.00 3.53
46 47 5.938322 ACAATTTATGCGTACAGTTTGGAG 58.062 37.500 0.00 0.00 0.00 3.86
47 48 4.616181 ATTTATGCGTACAGTTTGGAGC 57.384 40.909 0.00 0.00 0.00 4.70
48 49 2.018542 TATGCGTACAGTTTGGAGCC 57.981 50.000 0.00 0.00 0.00 4.70
49 50 0.324943 ATGCGTACAGTTTGGAGCCT 59.675 50.000 0.00 0.00 0.00 4.58
50 51 0.107831 TGCGTACAGTTTGGAGCCTT 59.892 50.000 0.00 0.00 0.00 4.35
51 52 0.517316 GCGTACAGTTTGGAGCCTTG 59.483 55.000 0.00 0.00 0.00 3.61
52 53 1.156736 CGTACAGTTTGGAGCCTTGG 58.843 55.000 0.00 0.00 0.00 3.61
53 54 1.270625 CGTACAGTTTGGAGCCTTGGA 60.271 52.381 0.00 0.00 0.00 3.53
54 55 2.152016 GTACAGTTTGGAGCCTTGGAC 58.848 52.381 0.00 0.00 0.00 4.02
55 56 0.178990 ACAGTTTGGAGCCTTGGACC 60.179 55.000 0.00 0.00 0.00 4.46
56 57 0.178992 CAGTTTGGAGCCTTGGACCA 60.179 55.000 0.00 0.00 0.00 4.02
57 58 0.779997 AGTTTGGAGCCTTGGACCAT 59.220 50.000 0.00 0.00 33.56 3.55
58 59 0.890683 GTTTGGAGCCTTGGACCATG 59.109 55.000 0.00 0.00 33.56 3.66
59 60 0.899717 TTTGGAGCCTTGGACCATGC 60.900 55.000 8.16 8.16 33.56 4.06
60 61 2.825836 GGAGCCTTGGACCATGCG 60.826 66.667 10.03 2.29 0.00 4.73
61 62 2.268920 GAGCCTTGGACCATGCGA 59.731 61.111 10.03 0.00 0.00 5.10
62 63 2.045926 AGCCTTGGACCATGCGAC 60.046 61.111 10.03 0.00 0.00 5.19
63 64 2.045926 GCCTTGGACCATGCGACT 60.046 61.111 0.00 0.00 0.00 4.18
64 65 2.401766 GCCTTGGACCATGCGACTG 61.402 63.158 0.00 0.00 0.00 3.51
65 66 1.746615 CCTTGGACCATGCGACTGG 60.747 63.158 0.00 2.41 42.35 4.00
71 72 3.578456 CCATGCGACTGGTTGTCC 58.422 61.111 0.00 0.00 42.49 4.02
72 73 1.302431 CCATGCGACTGGTTGTCCA 60.302 57.895 0.00 0.00 42.49 4.02
73 74 0.888736 CCATGCGACTGGTTGTCCAA 60.889 55.000 0.00 0.00 43.81 3.53
74 75 0.950836 CATGCGACTGGTTGTCCAAA 59.049 50.000 0.00 0.00 43.81 3.28
75 76 1.069022 CATGCGACTGGTTGTCCAAAG 60.069 52.381 0.00 0.00 43.81 2.77
76 77 1.282875 GCGACTGGTTGTCCAAAGC 59.717 57.895 0.00 0.00 43.81 3.51
77 78 1.444119 GCGACTGGTTGTCCAAAGCA 61.444 55.000 0.00 0.00 43.81 3.91
78 79 1.021202 CGACTGGTTGTCCAAAGCAA 58.979 50.000 0.00 0.00 43.81 3.91
79 80 1.403679 CGACTGGTTGTCCAAAGCAAA 59.596 47.619 0.00 0.00 43.81 3.68
80 81 2.541588 CGACTGGTTGTCCAAAGCAAAG 60.542 50.000 0.00 0.00 43.81 2.77
81 82 2.427095 GACTGGTTGTCCAAAGCAAAGT 59.573 45.455 0.00 0.00 43.81 2.66
82 83 3.626930 ACTGGTTGTCCAAAGCAAAGTA 58.373 40.909 0.00 0.00 43.81 2.24
83 84 4.215109 ACTGGTTGTCCAAAGCAAAGTAT 58.785 39.130 0.00 0.00 43.81 2.12
84 85 5.381757 ACTGGTTGTCCAAAGCAAAGTATA 58.618 37.500 0.00 0.00 43.81 1.47
85 86 5.830991 ACTGGTTGTCCAAAGCAAAGTATAA 59.169 36.000 0.00 0.00 43.81 0.98
86 87 6.322712 ACTGGTTGTCCAAAGCAAAGTATAAA 59.677 34.615 0.00 0.00 43.81 1.40
87 88 7.015195 ACTGGTTGTCCAAAGCAAAGTATAAAT 59.985 33.333 0.00 0.00 43.81 1.40
88 89 7.731054 TGGTTGTCCAAAGCAAAGTATAAATT 58.269 30.769 0.00 0.00 41.25 1.82
89 90 7.870445 TGGTTGTCCAAAGCAAAGTATAAATTC 59.130 33.333 0.00 0.00 41.25 2.17
90 91 7.330946 GGTTGTCCAAAGCAAAGTATAAATTCC 59.669 37.037 0.00 0.00 0.00 3.01
91 92 7.531857 TGTCCAAAGCAAAGTATAAATTCCA 57.468 32.000 0.00 0.00 0.00 3.53
92 93 7.601856 TGTCCAAAGCAAAGTATAAATTCCAG 58.398 34.615 0.00 0.00 0.00 3.86
93 94 7.450014 TGTCCAAAGCAAAGTATAAATTCCAGA 59.550 33.333 0.00 0.00 0.00 3.86
94 95 8.303876 GTCCAAAGCAAAGTATAAATTCCAGAA 58.696 33.333 0.00 0.00 0.00 3.02
95 96 8.865090 TCCAAAGCAAAGTATAAATTCCAGAAA 58.135 29.630 0.00 0.00 0.00 2.52
96 97 9.657419 CCAAAGCAAAGTATAAATTCCAGAAAT 57.343 29.630 0.00 0.00 0.00 2.17
128 129 9.256477 TCTATTAACACGTCATCACATTAATCC 57.744 33.333 0.00 0.00 0.00 3.01
129 130 7.857734 ATTAACACGTCATCACATTAATCCA 57.142 32.000 0.00 0.00 0.00 3.41
130 131 5.545658 AACACGTCATCACATTAATCCAC 57.454 39.130 0.00 0.00 0.00 4.02
131 132 4.574892 ACACGTCATCACATTAATCCACA 58.425 39.130 0.00 0.00 0.00 4.17
132 133 5.185454 ACACGTCATCACATTAATCCACAT 58.815 37.500 0.00 0.00 0.00 3.21
133 134 5.065090 ACACGTCATCACATTAATCCACATG 59.935 40.000 0.00 0.00 0.00 3.21
134 135 5.294060 CACGTCATCACATTAATCCACATGA 59.706 40.000 0.00 0.00 0.00 3.07
135 136 5.525012 ACGTCATCACATTAATCCACATGAG 59.475 40.000 0.00 0.00 0.00 2.90
136 137 5.525012 CGTCATCACATTAATCCACATGAGT 59.475 40.000 0.00 0.00 0.00 3.41
137 138 6.037500 CGTCATCACATTAATCCACATGAGTT 59.962 38.462 0.00 0.00 0.00 3.01
138 139 7.224557 CGTCATCACATTAATCCACATGAGTTA 59.775 37.037 0.00 0.00 0.00 2.24
139 140 8.892723 GTCATCACATTAATCCACATGAGTTAA 58.107 33.333 0.00 0.00 0.00 2.01
140 141 9.460019 TCATCACATTAATCCACATGAGTTAAA 57.540 29.630 0.00 0.00 0.00 1.52
151 152 8.050778 TCCACATGAGTTAAAAATACATGACC 57.949 34.615 0.00 0.00 40.13 4.02
152 153 7.122055 TCCACATGAGTTAAAAATACATGACCC 59.878 37.037 0.00 0.00 40.13 4.46
153 154 6.966632 CACATGAGTTAAAAATACATGACCCG 59.033 38.462 0.00 0.00 40.13 5.28
154 155 6.657541 ACATGAGTTAAAAATACATGACCCGT 59.342 34.615 0.00 0.00 40.13 5.28
155 156 7.175990 ACATGAGTTAAAAATACATGACCCGTT 59.824 33.333 0.00 0.00 40.13 4.44
156 157 7.136289 TGAGTTAAAAATACATGACCCGTTC 57.864 36.000 0.00 0.00 0.00 3.95
157 158 6.711194 TGAGTTAAAAATACATGACCCGTTCA 59.289 34.615 0.00 0.00 39.11 3.18
158 159 7.392113 TGAGTTAAAAATACATGACCCGTTCAT 59.608 33.333 0.00 0.00 46.75 2.57
159 160 8.117813 AGTTAAAAATACATGACCCGTTCATT 57.882 30.769 0.00 0.00 42.87 2.57
160 161 8.581578 AGTTAAAAATACATGACCCGTTCATTT 58.418 29.630 0.00 0.00 42.87 2.32
161 162 9.198837 GTTAAAAATACATGACCCGTTCATTTT 57.801 29.630 0.00 0.00 42.87 1.82
162 163 7.650834 AAAAATACATGACCCGTTCATTTTG 57.349 32.000 0.00 0.00 42.87 2.44
163 164 6.582677 AAATACATGACCCGTTCATTTTGA 57.417 33.333 0.00 0.00 42.87 2.69
164 165 6.773976 AATACATGACCCGTTCATTTTGAT 57.226 33.333 0.00 0.00 42.87 2.57
165 166 6.773976 ATACATGACCCGTTCATTTTGATT 57.226 33.333 0.00 0.00 42.87 2.57
166 167 5.467035 ACATGACCCGTTCATTTTGATTT 57.533 34.783 0.00 0.00 42.87 2.17
167 168 5.852827 ACATGACCCGTTCATTTTGATTTT 58.147 33.333 0.00 0.00 42.87 1.82
168 169 5.695816 ACATGACCCGTTCATTTTGATTTTG 59.304 36.000 0.00 0.00 42.87 2.44
169 170 5.521906 TGACCCGTTCATTTTGATTTTGA 57.478 34.783 0.00 0.00 0.00 2.69
170 171 5.285651 TGACCCGTTCATTTTGATTTTGAC 58.714 37.500 0.00 0.00 0.00 3.18
171 172 5.163509 TGACCCGTTCATTTTGATTTTGACA 60.164 36.000 0.00 0.00 0.00 3.58
172 173 5.288804 ACCCGTTCATTTTGATTTTGACAG 58.711 37.500 0.00 0.00 0.00 3.51
173 174 5.068460 ACCCGTTCATTTTGATTTTGACAGA 59.932 36.000 0.00 0.00 0.00 3.41
174 175 6.158598 CCCGTTCATTTTGATTTTGACAGAT 58.841 36.000 0.00 0.00 0.00 2.90
175 176 6.089820 CCCGTTCATTTTGATTTTGACAGATG 59.910 38.462 0.00 0.00 0.00 2.90
176 177 6.862608 CCGTTCATTTTGATTTTGACAGATGA 59.137 34.615 0.00 0.00 0.00 2.92
177 178 7.061441 CCGTTCATTTTGATTTTGACAGATGAG 59.939 37.037 0.00 0.00 0.00 2.90
178 179 7.804600 CGTTCATTTTGATTTTGACAGATGAGA 59.195 33.333 0.00 0.00 0.00 3.27
179 180 9.635520 GTTCATTTTGATTTTGACAGATGAGAT 57.364 29.630 0.00 0.00 0.00 2.75
207 208 8.865590 AAAAATCTAAAAGTTACGTGCAACAT 57.134 26.923 0.00 0.00 35.74 2.71
208 209 8.865590 AAAATCTAAAAGTTACGTGCAACATT 57.134 26.923 0.00 0.00 35.74 2.71
209 210 9.953697 AAAATCTAAAAGTTACGTGCAACATTA 57.046 25.926 0.00 0.00 35.74 1.90
218 219 8.991243 AGTTACGTGCAACATTATTAGTTAGA 57.009 30.769 0.00 0.00 35.74 2.10
219 220 8.866956 AGTTACGTGCAACATTATTAGTTAGAC 58.133 33.333 0.00 0.00 35.74 2.59
220 221 8.649841 GTTACGTGCAACATTATTAGTTAGACA 58.350 33.333 0.00 0.00 35.74 3.41
221 222 7.843490 ACGTGCAACATTATTAGTTAGACAT 57.157 32.000 0.00 0.00 35.74 3.06
222 223 8.936070 ACGTGCAACATTATTAGTTAGACATA 57.064 30.769 0.00 0.00 35.74 2.29
223 224 9.542462 ACGTGCAACATTATTAGTTAGACATAT 57.458 29.630 0.00 0.00 35.74 1.78
237 238 8.824159 AGTTAGACATATTATGCATCTGACAC 57.176 34.615 0.19 7.69 29.74 3.67
238 239 7.596621 AGTTAGACATATTATGCATCTGACACG 59.403 37.037 0.19 0.00 29.74 4.49
239 240 5.847304 AGACATATTATGCATCTGACACGT 58.153 37.500 0.19 0.00 0.00 4.49
240 241 6.981722 AGACATATTATGCATCTGACACGTA 58.018 36.000 0.19 0.00 0.00 3.57
241 242 7.606349 AGACATATTATGCATCTGACACGTAT 58.394 34.615 0.19 0.00 0.00 3.06
242 243 8.739972 AGACATATTATGCATCTGACACGTATA 58.260 33.333 0.19 0.00 0.00 1.47
243 244 8.917415 ACATATTATGCATCTGACACGTATAG 57.083 34.615 0.19 0.00 0.00 1.31
244 245 7.976175 ACATATTATGCATCTGACACGTATAGG 59.024 37.037 0.19 0.00 0.00 2.57
245 246 2.509052 TGCATCTGACACGTATAGGC 57.491 50.000 0.00 0.00 0.00 3.93
246 247 1.754226 TGCATCTGACACGTATAGGCA 59.246 47.619 0.00 0.00 0.00 4.75
247 248 2.365293 TGCATCTGACACGTATAGGCAT 59.635 45.455 0.00 0.00 0.00 4.40
248 249 2.733552 GCATCTGACACGTATAGGCATG 59.266 50.000 0.00 0.00 0.00 4.06
249 250 3.552890 GCATCTGACACGTATAGGCATGA 60.553 47.826 0.00 0.00 0.00 3.07
250 251 4.814147 CATCTGACACGTATAGGCATGAT 58.186 43.478 0.00 0.00 0.00 2.45
251 252 4.505313 TCTGACACGTATAGGCATGATC 57.495 45.455 0.00 0.00 0.00 2.92
252 253 3.888930 TCTGACACGTATAGGCATGATCA 59.111 43.478 0.00 0.00 0.00 2.92
253 254 3.977427 TGACACGTATAGGCATGATCAC 58.023 45.455 0.00 0.00 0.00 3.06
254 255 2.980476 GACACGTATAGGCATGATCACG 59.020 50.000 0.00 0.00 35.62 4.35
255 256 2.361119 ACACGTATAGGCATGATCACGT 59.639 45.455 0.00 0.00 42.76 4.49
256 257 3.566742 ACACGTATAGGCATGATCACGTA 59.433 43.478 0.00 0.00 40.31 3.57
257 258 3.912563 CACGTATAGGCATGATCACGTAC 59.087 47.826 0.00 0.00 40.31 3.67
258 259 3.819337 ACGTATAGGCATGATCACGTACT 59.181 43.478 0.00 0.00 40.47 2.73
259 260 4.999311 ACGTATAGGCATGATCACGTACTA 59.001 41.667 0.00 0.00 40.47 1.82
260 261 5.121925 ACGTATAGGCATGATCACGTACTAG 59.878 44.000 0.00 0.00 40.47 2.57
261 262 5.350640 CGTATAGGCATGATCACGTACTAGA 59.649 44.000 0.00 0.00 0.00 2.43
262 263 5.888691 ATAGGCATGATCACGTACTAGAG 57.111 43.478 0.00 0.00 0.00 2.43
263 264 3.821748 AGGCATGATCACGTACTAGAGA 58.178 45.455 0.00 0.00 0.00 3.10
264 265 4.207955 AGGCATGATCACGTACTAGAGAA 58.792 43.478 0.00 0.00 0.00 2.87
265 266 4.277174 AGGCATGATCACGTACTAGAGAAG 59.723 45.833 0.00 0.00 0.00 2.85
266 267 3.978217 GCATGATCACGTACTAGAGAAGC 59.022 47.826 0.00 0.00 0.00 3.86
267 268 4.498177 GCATGATCACGTACTAGAGAAGCA 60.498 45.833 0.00 0.00 0.00 3.91
268 269 5.582550 CATGATCACGTACTAGAGAAGCAA 58.417 41.667 0.00 0.00 0.00 3.91
269 270 5.638596 TGATCACGTACTAGAGAAGCAAA 57.361 39.130 0.00 0.00 0.00 3.68
270 271 6.208988 TGATCACGTACTAGAGAAGCAAAT 57.791 37.500 0.00 0.00 0.00 2.32
271 272 7.329588 TGATCACGTACTAGAGAAGCAAATA 57.670 36.000 0.00 0.00 0.00 1.40
272 273 7.194278 TGATCACGTACTAGAGAAGCAAATAC 58.806 38.462 0.00 0.00 0.00 1.89
273 274 6.754702 TCACGTACTAGAGAAGCAAATACT 57.245 37.500 0.00 0.00 0.00 2.12
274 275 7.854557 TCACGTACTAGAGAAGCAAATACTA 57.145 36.000 0.00 0.00 0.00 1.82
275 276 7.917597 TCACGTACTAGAGAAGCAAATACTAG 58.082 38.462 0.00 0.00 37.25 2.57
276 277 6.633634 CACGTACTAGAGAAGCAAATACTAGC 59.366 42.308 0.00 0.00 35.42 3.42
277 278 6.144175 CGTACTAGAGAAGCAAATACTAGCC 58.856 44.000 0.00 0.00 35.42 3.93
278 279 6.238676 CGTACTAGAGAAGCAAATACTAGCCA 60.239 42.308 0.00 0.00 35.42 4.75
279 280 5.908341 ACTAGAGAAGCAAATACTAGCCAC 58.092 41.667 0.00 0.00 35.42 5.01
280 281 4.826274 AGAGAAGCAAATACTAGCCACA 57.174 40.909 0.00 0.00 0.00 4.17
281 282 5.365021 AGAGAAGCAAATACTAGCCACAT 57.635 39.130 0.00 0.00 0.00 3.21
282 283 5.363939 AGAGAAGCAAATACTAGCCACATC 58.636 41.667 0.00 0.00 0.00 3.06
283 284 4.455606 AGAAGCAAATACTAGCCACATCC 58.544 43.478 0.00 0.00 0.00 3.51
284 285 3.931907 AGCAAATACTAGCCACATCCA 57.068 42.857 0.00 0.00 0.00 3.41
285 286 3.813443 AGCAAATACTAGCCACATCCAG 58.187 45.455 0.00 0.00 0.00 3.86
286 287 3.455910 AGCAAATACTAGCCACATCCAGA 59.544 43.478 0.00 0.00 0.00 3.86
287 288 3.561725 GCAAATACTAGCCACATCCAGAC 59.438 47.826 0.00 0.00 0.00 3.51
288 289 4.684485 GCAAATACTAGCCACATCCAGACT 60.684 45.833 0.00 0.00 0.00 3.24
289 290 4.946478 AATACTAGCCACATCCAGACTC 57.054 45.455 0.00 0.00 0.00 3.36
290 291 2.541233 ACTAGCCACATCCAGACTCT 57.459 50.000 0.00 0.00 0.00 3.24
291 292 3.671740 ACTAGCCACATCCAGACTCTA 57.328 47.619 0.00 0.00 0.00 2.43
292 293 3.982516 ACTAGCCACATCCAGACTCTAA 58.017 45.455 0.00 0.00 0.00 2.10
293 294 3.957497 ACTAGCCACATCCAGACTCTAAG 59.043 47.826 0.00 0.00 0.00 2.18
294 295 3.107402 AGCCACATCCAGACTCTAAGA 57.893 47.619 0.00 0.00 0.00 2.10
295 296 2.763448 AGCCACATCCAGACTCTAAGAC 59.237 50.000 0.00 0.00 0.00 3.01
296 297 2.497675 GCCACATCCAGACTCTAAGACA 59.502 50.000 0.00 0.00 0.00 3.41
297 298 3.677424 GCCACATCCAGACTCTAAGACAC 60.677 52.174 0.00 0.00 0.00 3.67
298 299 3.428180 CCACATCCAGACTCTAAGACACG 60.428 52.174 0.00 0.00 0.00 4.49
299 300 3.191581 CACATCCAGACTCTAAGACACGT 59.808 47.826 0.00 0.00 0.00 4.49
300 301 4.395231 CACATCCAGACTCTAAGACACGTA 59.605 45.833 0.00 0.00 0.00 3.57
301 302 5.066634 CACATCCAGACTCTAAGACACGTAT 59.933 44.000 0.00 0.00 0.00 3.06
302 303 6.260271 CACATCCAGACTCTAAGACACGTATA 59.740 42.308 0.00 0.00 0.00 1.47
303 304 6.827251 ACATCCAGACTCTAAGACACGTATAA 59.173 38.462 0.00 0.00 0.00 0.98
304 305 6.674694 TCCAGACTCTAAGACACGTATAAC 57.325 41.667 0.00 0.00 0.00 1.89
305 306 5.587844 TCCAGACTCTAAGACACGTATAACC 59.412 44.000 0.00 0.00 0.00 2.85
306 307 5.356190 CCAGACTCTAAGACACGTATAACCA 59.644 44.000 0.00 0.00 0.00 3.67
307 308 6.039493 CCAGACTCTAAGACACGTATAACCAT 59.961 42.308 0.00 0.00 0.00 3.55
308 309 6.913132 CAGACTCTAAGACACGTATAACCATG 59.087 42.308 0.00 0.00 0.00 3.66
309 310 6.827251 AGACTCTAAGACACGTATAACCATGA 59.173 38.462 0.00 0.00 0.00 3.07
310 311 6.793349 ACTCTAAGACACGTATAACCATGAC 58.207 40.000 0.00 0.00 0.00 3.06
311 312 6.140303 TCTAAGACACGTATAACCATGACC 57.860 41.667 0.00 0.00 0.00 4.02
312 313 4.811969 AAGACACGTATAACCATGACCA 57.188 40.909 0.00 0.00 0.00 4.02
313 314 5.353394 AAGACACGTATAACCATGACCAT 57.647 39.130 0.00 0.00 0.00 3.55
314 315 4.693283 AGACACGTATAACCATGACCATG 58.307 43.478 0.00 3.11 38.51 3.66
315 316 4.161565 AGACACGTATAACCATGACCATGT 59.838 41.667 8.93 0.00 37.11 3.21
316 317 5.361571 AGACACGTATAACCATGACCATGTA 59.638 40.000 8.93 0.00 37.11 2.29
317 318 5.353938 ACACGTATAACCATGACCATGTAC 58.646 41.667 8.93 4.46 37.11 2.90
318 319 5.128171 ACACGTATAACCATGACCATGTACT 59.872 40.000 8.93 0.00 37.11 2.73
319 320 6.321945 ACACGTATAACCATGACCATGTACTA 59.678 38.462 8.93 0.00 37.11 1.82
320 321 6.861572 CACGTATAACCATGACCATGTACTAG 59.138 42.308 8.93 0.00 37.11 2.57
321 322 6.774170 ACGTATAACCATGACCATGTACTAGA 59.226 38.462 8.93 0.00 37.11 2.43
322 323 7.286087 ACGTATAACCATGACCATGTACTAGAA 59.714 37.037 8.93 0.00 37.11 2.10
323 324 8.139350 CGTATAACCATGACCATGTACTAGAAA 58.861 37.037 8.93 0.00 37.11 2.52
324 325 9.826574 GTATAACCATGACCATGTACTAGAAAA 57.173 33.333 8.93 0.00 37.11 2.29
344 345 3.356529 AAAAGTGCACTATCCAGAGGG 57.643 47.619 22.01 0.00 0.00 4.30
354 355 3.914860 TCCAGAGGGAGGGAACTTT 57.085 52.632 0.00 0.00 44.43 2.66
355 356 2.133858 TCCAGAGGGAGGGAACTTTT 57.866 50.000 0.00 0.00 44.43 2.27
356 357 1.705186 TCCAGAGGGAGGGAACTTTTG 59.295 52.381 0.00 0.00 44.43 2.44
357 358 1.272147 CCAGAGGGAGGGAACTTTTGG 60.272 57.143 0.00 0.00 44.43 3.28
358 359 1.425448 CAGAGGGAGGGAACTTTTGGT 59.575 52.381 0.00 0.00 44.43 3.67
359 360 1.705745 AGAGGGAGGGAACTTTTGGTC 59.294 52.381 0.00 0.00 44.43 4.02
360 361 1.705745 GAGGGAGGGAACTTTTGGTCT 59.294 52.381 0.00 0.00 44.43 3.85
361 362 2.910977 GAGGGAGGGAACTTTTGGTCTA 59.089 50.000 0.00 0.00 44.43 2.59
362 363 3.523972 GAGGGAGGGAACTTTTGGTCTAT 59.476 47.826 0.00 0.00 44.43 1.98
363 364 3.267031 AGGGAGGGAACTTTTGGTCTATG 59.733 47.826 0.00 0.00 44.43 2.23
364 365 3.621558 GGAGGGAACTTTTGGTCTATGG 58.378 50.000 0.00 0.00 44.43 2.74
365 366 3.621558 GAGGGAACTTTTGGTCTATGGG 58.378 50.000 0.00 0.00 44.43 4.00
366 367 2.993863 AGGGAACTTTTGGTCTATGGGT 59.006 45.455 0.00 0.00 37.44 4.51
367 368 3.089284 GGGAACTTTTGGTCTATGGGTG 58.911 50.000 0.00 0.00 36.15 4.61
368 369 3.499745 GGGAACTTTTGGTCTATGGGTGT 60.500 47.826 0.00 0.00 36.15 4.16
369 370 4.263594 GGGAACTTTTGGTCTATGGGTGTA 60.264 45.833 0.00 0.00 36.15 2.90
370 371 5.506708 GGAACTTTTGGTCTATGGGTGTAT 58.493 41.667 0.00 0.00 36.15 2.29
371 372 6.353255 GGGAACTTTTGGTCTATGGGTGTATA 60.353 42.308 0.00 0.00 36.15 1.47
372 373 7.287810 GGAACTTTTGGTCTATGGGTGTATAT 58.712 38.462 0.00 0.00 36.15 0.86
373 374 8.434392 GGAACTTTTGGTCTATGGGTGTATATA 58.566 37.037 0.00 0.00 36.15 0.86
374 375 9.269453 GAACTTTTGGTCTATGGGTGTATATAC 57.731 37.037 5.89 5.89 32.27 1.47
375 376 8.326765 ACTTTTGGTCTATGGGTGTATATACA 57.673 34.615 11.62 11.62 0.00 2.29
426 427 7.928908 TTCAATCAAAAGTCGAAAATTCCTG 57.071 32.000 0.00 0.00 0.00 3.86
427 428 7.270757 TCAATCAAAAGTCGAAAATTCCTGA 57.729 32.000 0.00 0.00 0.00 3.86
428 429 7.711846 TCAATCAAAAGTCGAAAATTCCTGAA 58.288 30.769 0.00 0.00 0.00 3.02
429 430 8.194104 TCAATCAAAAGTCGAAAATTCCTGAAA 58.806 29.630 0.00 0.00 0.00 2.69
430 431 8.816144 CAATCAAAAGTCGAAAATTCCTGAAAA 58.184 29.630 0.00 0.00 0.00 2.29
431 432 9.546428 AATCAAAAGTCGAAAATTCCTGAAAAT 57.454 25.926 0.00 0.00 0.00 1.82
466 467 8.928270 ATAAACTTGACCTTCTATTGTACTCG 57.072 34.615 0.00 0.00 0.00 4.18
467 468 5.979288 ACTTGACCTTCTATTGTACTCGT 57.021 39.130 0.00 0.00 0.00 4.18
468 469 5.710984 ACTTGACCTTCTATTGTACTCGTG 58.289 41.667 0.00 0.00 0.00 4.35
469 470 5.475909 ACTTGACCTTCTATTGTACTCGTGA 59.524 40.000 0.00 0.00 0.00 4.35
470 471 5.562506 TGACCTTCTATTGTACTCGTGAG 57.437 43.478 0.00 0.00 0.00 3.51
471 472 5.250982 TGACCTTCTATTGTACTCGTGAGA 58.749 41.667 3.44 0.00 39.12 3.27
472 473 5.708697 TGACCTTCTATTGTACTCGTGAGAA 59.291 40.000 3.44 0.00 41.32 2.87
473 474 6.208007 TGACCTTCTATTGTACTCGTGAGAAA 59.792 38.462 3.44 0.00 41.32 2.52
474 475 6.989659 ACCTTCTATTGTACTCGTGAGAAAA 58.010 36.000 3.44 0.00 41.32 2.29
475 476 7.612677 ACCTTCTATTGTACTCGTGAGAAAAT 58.387 34.615 3.44 3.40 41.32 1.82
476 477 8.746530 ACCTTCTATTGTACTCGTGAGAAAATA 58.253 33.333 3.44 4.28 41.32 1.40
477 478 9.582431 CCTTCTATTGTACTCGTGAGAAAATAA 57.418 33.333 3.44 0.00 41.32 1.40
482 483 8.786826 ATTGTACTCGTGAGAAAATAAATCCA 57.213 30.769 3.44 0.00 41.32 3.41
483 484 7.591006 TGTACTCGTGAGAAAATAAATCCAC 57.409 36.000 3.44 0.00 41.32 4.02
484 485 7.156000 TGTACTCGTGAGAAAATAAATCCACA 58.844 34.615 3.44 0.00 41.32 4.17
485 486 7.658167 TGTACTCGTGAGAAAATAAATCCACAA 59.342 33.333 3.44 0.00 41.32 3.33
486 487 7.504924 ACTCGTGAGAAAATAAATCCACAAA 57.495 32.000 3.44 0.00 41.32 2.83
487 488 7.936584 ACTCGTGAGAAAATAAATCCACAAAA 58.063 30.769 3.44 0.00 41.32 2.44
488 489 8.410141 ACTCGTGAGAAAATAAATCCACAAAAA 58.590 29.630 3.44 0.00 41.32 1.94
543 544 9.255304 GACAAATTTTTGGCTAAAATAGTGTGA 57.745 29.630 25.81 0.92 43.84 3.58
544 545 9.606631 ACAAATTTTTGGCTAAAATAGTGTGAA 57.393 25.926 22.86 0.00 43.84 3.18
549 550 9.906660 TTTTTGGCTAAAATAGTGTGAATAGTG 57.093 29.630 8.93 0.00 35.82 2.74
550 551 8.856153 TTTGGCTAAAATAGTGTGAATAGTGA 57.144 30.769 0.00 0.00 0.00 3.41
551 552 7.843490 TGGCTAAAATAGTGTGAATAGTGAC 57.157 36.000 0.00 0.00 0.00 3.67
552 553 6.821665 TGGCTAAAATAGTGTGAATAGTGACC 59.178 38.462 0.00 0.00 0.00 4.02
553 554 7.048512 GGCTAAAATAGTGTGAATAGTGACCT 58.951 38.462 0.00 0.00 0.00 3.85
554 555 8.202137 GGCTAAAATAGTGTGAATAGTGACCTA 58.798 37.037 0.00 0.00 0.00 3.08
555 556 9.765795 GCTAAAATAGTGTGAATAGTGACCTAT 57.234 33.333 0.00 0.00 35.33 2.57
562 563 8.478775 AGTGTGAATAGTGACCTATAATAGCA 57.521 34.615 0.00 0.00 32.57 3.49
563 564 8.924303 AGTGTGAATAGTGACCTATAATAGCAA 58.076 33.333 0.00 0.00 32.57 3.91
564 565 9.542462 GTGTGAATAGTGACCTATAATAGCAAA 57.458 33.333 0.00 0.00 32.57 3.68
607 608 0.618458 TGCCCTTAGTGGTGTCCATC 59.382 55.000 0.00 0.00 35.28 3.51
631 632 1.202915 TCAGTTTTGCCCTCAGATGCA 60.203 47.619 0.00 0.00 35.27 3.96
880 881 4.103103 CGGCGACAGAGAGCACGA 62.103 66.667 0.00 0.00 34.54 4.35
908 911 2.402572 CGGCGAGAGAGAGAGCACA 61.403 63.158 0.00 0.00 0.00 4.57
983 986 2.750237 GGCGGCGTTGAAATCCCT 60.750 61.111 9.37 0.00 0.00 4.20
991 994 1.539827 CGTTGAAATCCCTTTCGGCTT 59.460 47.619 0.00 0.00 43.10 4.35
1112 1116 3.262420 CGTTGATCGAAGGGTTTCTCAT 58.738 45.455 0.00 0.00 42.86 2.90
1114 1118 4.868171 CGTTGATCGAAGGGTTTCTCATAA 59.132 41.667 0.00 0.00 42.86 1.90
1135 1139 0.818296 CCGAGGAACCAGAATCGTCT 59.182 55.000 0.00 0.00 33.43 4.18
1226 1230 3.841643 GAGCAATGGGTTGATCTGTTTG 58.158 45.455 0.00 0.00 45.03 2.93
1295 1299 5.423015 GCCAAGACTCTGATGAATGAACTA 58.577 41.667 0.00 0.00 0.00 2.24
1745 1750 0.035881 CTGCTCTGCCTTTCTGTCCA 59.964 55.000 0.00 0.00 0.00 4.02
1811 1816 0.034059 CAGGCTAGACTAATGGGCCG 59.966 60.000 0.00 0.00 46.44 6.13
1819 1824 0.255890 ACTAATGGGCCGACTGCATT 59.744 50.000 8.87 8.87 43.89 3.56
1827 1832 2.288666 GGCCGACTGCATTCAATTAGA 58.711 47.619 4.82 0.00 43.89 2.10
1828 1833 2.682856 GGCCGACTGCATTCAATTAGAA 59.317 45.455 4.82 0.00 43.89 2.10
1866 1871 8.696410 TTTCTTGCGTATTTTTCTGTTTTCTT 57.304 26.923 0.00 0.00 0.00 2.52
2149 2155 2.079170 TGAAGGGTGGAAAATGCACA 57.921 45.000 4.42 0.00 40.73 4.57
2213 2219 1.339929 GTTTGTGGTGTTTAGGGCTGG 59.660 52.381 0.00 0.00 0.00 4.85
2224 2230 2.774322 TAGGGCTGGGCTGGTAACCA 62.774 60.000 0.00 0.00 35.05 3.67
2473 2482 5.479027 GGCACTTGGTTTAGGATTTAAAGGA 59.521 40.000 0.00 0.00 0.00 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 8.535592 CAAACTGTACGCATAAATTGTCAAAAA 58.464 29.630 0.00 0.00 0.00 1.94
18 19 7.168302 CCAAACTGTACGCATAAATTGTCAAAA 59.832 33.333 0.00 0.00 0.00 2.44
19 20 6.638873 CCAAACTGTACGCATAAATTGTCAAA 59.361 34.615 0.00 0.00 0.00 2.69
20 21 6.017026 TCCAAACTGTACGCATAAATTGTCAA 60.017 34.615 0.00 0.00 0.00 3.18
21 22 5.470437 TCCAAACTGTACGCATAAATTGTCA 59.530 36.000 0.00 0.00 0.00 3.58
22 23 5.933790 TCCAAACTGTACGCATAAATTGTC 58.066 37.500 0.00 0.00 0.00 3.18
23 24 5.619086 GCTCCAAACTGTACGCATAAATTGT 60.619 40.000 0.00 0.00 0.00 2.71
24 25 4.793216 GCTCCAAACTGTACGCATAAATTG 59.207 41.667 0.00 0.00 0.00 2.32
25 26 4.142469 GGCTCCAAACTGTACGCATAAATT 60.142 41.667 0.00 0.00 0.00 1.82
26 27 3.377172 GGCTCCAAACTGTACGCATAAAT 59.623 43.478 0.00 0.00 0.00 1.40
27 28 2.745281 GGCTCCAAACTGTACGCATAAA 59.255 45.455 0.00 0.00 0.00 1.40
28 29 2.027561 AGGCTCCAAACTGTACGCATAA 60.028 45.455 0.00 0.00 0.00 1.90
29 30 1.553248 AGGCTCCAAACTGTACGCATA 59.447 47.619 0.00 0.00 0.00 3.14
30 31 0.324943 AGGCTCCAAACTGTACGCAT 59.675 50.000 0.00 0.00 0.00 4.73
31 32 0.107831 AAGGCTCCAAACTGTACGCA 59.892 50.000 0.00 0.00 0.00 5.24
32 33 0.517316 CAAGGCTCCAAACTGTACGC 59.483 55.000 0.00 0.00 0.00 4.42
33 34 1.156736 CCAAGGCTCCAAACTGTACG 58.843 55.000 0.00 0.00 0.00 3.67
34 35 2.152016 GTCCAAGGCTCCAAACTGTAC 58.848 52.381 0.00 0.00 0.00 2.90
35 36 1.073284 GGTCCAAGGCTCCAAACTGTA 59.927 52.381 0.00 0.00 0.00 2.74
36 37 0.178990 GGTCCAAGGCTCCAAACTGT 60.179 55.000 0.00 0.00 0.00 3.55
37 38 0.178992 TGGTCCAAGGCTCCAAACTG 60.179 55.000 0.00 0.00 0.00 3.16
38 39 0.779997 ATGGTCCAAGGCTCCAAACT 59.220 50.000 0.00 0.00 34.80 2.66
39 40 0.890683 CATGGTCCAAGGCTCCAAAC 59.109 55.000 0.00 0.00 34.80 2.93
40 41 0.899717 GCATGGTCCAAGGCTCCAAA 60.900 55.000 10.76 0.00 34.80 3.28
41 42 1.304381 GCATGGTCCAAGGCTCCAA 60.304 57.895 10.76 0.00 34.80 3.53
42 43 2.356278 GCATGGTCCAAGGCTCCA 59.644 61.111 10.76 0.00 35.64 3.86
43 44 2.825836 CGCATGGTCCAAGGCTCC 60.826 66.667 14.77 0.00 0.00 4.70
44 45 2.109126 GTCGCATGGTCCAAGGCTC 61.109 63.158 14.77 6.35 0.00 4.70
45 46 2.045926 GTCGCATGGTCCAAGGCT 60.046 61.111 14.77 0.00 0.00 4.58
46 47 2.045926 AGTCGCATGGTCCAAGGC 60.046 61.111 8.47 8.47 0.00 4.35
47 48 1.746615 CCAGTCGCATGGTCCAAGG 60.747 63.158 0.00 0.00 35.47 3.61
48 49 3.895025 CCAGTCGCATGGTCCAAG 58.105 61.111 0.00 0.00 35.47 3.61
63 64 6.716934 TTTATACTTTGCTTTGGACAACCA 57.283 33.333 0.00 0.00 45.34 3.67
64 65 7.330946 GGAATTTATACTTTGCTTTGGACAACC 59.669 37.037 0.00 0.00 0.00 3.77
65 66 7.870445 TGGAATTTATACTTTGCTTTGGACAAC 59.130 33.333 0.00 0.00 0.00 3.32
66 67 7.957002 TGGAATTTATACTTTGCTTTGGACAA 58.043 30.769 0.00 0.00 0.00 3.18
67 68 7.450014 TCTGGAATTTATACTTTGCTTTGGACA 59.550 33.333 0.00 0.00 0.00 4.02
68 69 7.826690 TCTGGAATTTATACTTTGCTTTGGAC 58.173 34.615 0.00 0.00 0.00 4.02
69 70 8.415950 TTCTGGAATTTATACTTTGCTTTGGA 57.584 30.769 0.00 0.00 0.00 3.53
70 71 9.657419 ATTTCTGGAATTTATACTTTGCTTTGG 57.343 29.630 0.00 0.00 0.00 3.28
102 103 9.256477 GGATTAATGTGATGACGTGTTAATAGA 57.744 33.333 0.00 0.00 0.00 1.98
103 104 9.040939 TGGATTAATGTGATGACGTGTTAATAG 57.959 33.333 0.00 0.00 0.00 1.73
104 105 8.822855 GTGGATTAATGTGATGACGTGTTAATA 58.177 33.333 0.00 0.00 0.00 0.98
105 106 7.335673 TGTGGATTAATGTGATGACGTGTTAAT 59.664 33.333 0.00 1.75 0.00 1.40
106 107 6.651225 TGTGGATTAATGTGATGACGTGTTAA 59.349 34.615 0.00 0.00 0.00 2.01
107 108 6.166982 TGTGGATTAATGTGATGACGTGTTA 58.833 36.000 0.00 0.00 0.00 2.41
108 109 5.000591 TGTGGATTAATGTGATGACGTGTT 58.999 37.500 0.00 0.00 0.00 3.32
109 110 4.574892 TGTGGATTAATGTGATGACGTGT 58.425 39.130 0.00 0.00 0.00 4.49
110 111 5.294060 TCATGTGGATTAATGTGATGACGTG 59.706 40.000 0.00 0.00 0.00 4.49
111 112 5.427378 TCATGTGGATTAATGTGATGACGT 58.573 37.500 0.00 0.00 0.00 4.34
112 113 5.525012 ACTCATGTGGATTAATGTGATGACG 59.475 40.000 0.00 0.00 0.00 4.35
113 114 6.932356 ACTCATGTGGATTAATGTGATGAC 57.068 37.500 0.00 0.00 0.00 3.06
114 115 9.460019 TTTAACTCATGTGGATTAATGTGATGA 57.540 29.630 0.00 0.00 0.00 2.92
125 126 8.686334 GGTCATGTATTTTTAACTCATGTGGAT 58.314 33.333 0.00 0.00 37.64 3.41
126 127 7.122055 GGGTCATGTATTTTTAACTCATGTGGA 59.878 37.037 0.00 0.00 37.64 4.02
127 128 7.257722 GGGTCATGTATTTTTAACTCATGTGG 58.742 38.462 0.00 0.00 37.64 4.17
128 129 6.966632 CGGGTCATGTATTTTTAACTCATGTG 59.033 38.462 0.00 0.00 37.64 3.21
129 130 6.657541 ACGGGTCATGTATTTTTAACTCATGT 59.342 34.615 0.00 0.00 37.64 3.21
130 131 7.083875 ACGGGTCATGTATTTTTAACTCATG 57.916 36.000 0.00 0.00 37.71 3.07
131 132 7.392113 TGAACGGGTCATGTATTTTTAACTCAT 59.608 33.333 0.00 0.00 0.00 2.90
132 133 6.711194 TGAACGGGTCATGTATTTTTAACTCA 59.289 34.615 0.00 0.00 0.00 3.41
133 134 7.136289 TGAACGGGTCATGTATTTTTAACTC 57.864 36.000 0.00 0.00 0.00 3.01
134 135 7.696992 ATGAACGGGTCATGTATTTTTAACT 57.303 32.000 7.93 0.00 45.69 2.24
135 136 8.751302 AAATGAACGGGTCATGTATTTTTAAC 57.249 30.769 9.70 0.00 46.80 2.01
136 137 9.197694 CAAAATGAACGGGTCATGTATTTTTAA 57.802 29.630 9.70 0.00 46.80 1.52
137 138 8.577296 TCAAAATGAACGGGTCATGTATTTTTA 58.423 29.630 9.70 0.00 46.80 1.52
138 139 7.437748 TCAAAATGAACGGGTCATGTATTTTT 58.562 30.769 9.70 3.98 46.80 1.94
139 140 6.987386 TCAAAATGAACGGGTCATGTATTTT 58.013 32.000 9.70 4.35 46.80 1.82
140 141 6.582677 TCAAAATGAACGGGTCATGTATTT 57.417 33.333 9.70 3.89 46.80 1.40
141 142 6.773976 ATCAAAATGAACGGGTCATGTATT 57.226 33.333 9.70 2.94 46.80 1.89
142 143 6.773976 AATCAAAATGAACGGGTCATGTAT 57.226 33.333 9.70 0.00 46.80 2.29
143 144 6.582677 AAATCAAAATGAACGGGTCATGTA 57.417 33.333 9.70 0.00 46.80 2.29
144 145 5.467035 AAATCAAAATGAACGGGTCATGT 57.533 34.783 9.70 0.00 46.80 3.21
145 146 5.925397 TCAAAATCAAAATGAACGGGTCATG 59.075 36.000 9.70 0.00 46.80 3.07
147 148 5.163509 TGTCAAAATCAAAATGAACGGGTCA 60.164 36.000 0.00 0.00 41.67 4.02
148 149 5.285651 TGTCAAAATCAAAATGAACGGGTC 58.714 37.500 0.00 0.00 0.00 4.46
149 150 5.068460 TCTGTCAAAATCAAAATGAACGGGT 59.932 36.000 0.00 0.00 0.00 5.28
150 151 5.527951 TCTGTCAAAATCAAAATGAACGGG 58.472 37.500 0.00 0.00 0.00 5.28
151 152 6.862608 TCATCTGTCAAAATCAAAATGAACGG 59.137 34.615 0.00 0.00 0.00 4.44
152 153 7.804600 TCTCATCTGTCAAAATCAAAATGAACG 59.195 33.333 0.00 0.00 0.00 3.95
153 154 9.635520 ATCTCATCTGTCAAAATCAAAATGAAC 57.364 29.630 0.00 0.00 0.00 3.18
182 183 8.865590 ATGTTGCACGTAACTTTTAGATTTTT 57.134 26.923 3.08 0.00 0.00 1.94
183 184 8.865590 AATGTTGCACGTAACTTTTAGATTTT 57.134 26.923 3.08 0.00 0.00 1.82
192 193 9.426837 TCTAACTAATAATGTTGCACGTAACTT 57.573 29.630 3.08 0.00 0.00 2.66
193 194 8.866956 GTCTAACTAATAATGTTGCACGTAACT 58.133 33.333 3.08 0.00 0.00 2.24
194 195 8.649841 TGTCTAACTAATAATGTTGCACGTAAC 58.350 33.333 0.00 0.00 0.00 2.50
195 196 8.760103 TGTCTAACTAATAATGTTGCACGTAA 57.240 30.769 0.00 0.00 0.00 3.18
196 197 8.936070 ATGTCTAACTAATAATGTTGCACGTA 57.064 30.769 0.00 0.00 0.00 3.57
197 198 7.843490 ATGTCTAACTAATAATGTTGCACGT 57.157 32.000 0.00 0.00 0.00 4.49
211 212 9.914131 GTGTCAGATGCATAATATGTCTAACTA 57.086 33.333 0.00 0.00 0.00 2.24
212 213 7.596621 CGTGTCAGATGCATAATATGTCTAACT 59.403 37.037 0.00 0.00 0.00 2.24
213 214 7.382488 ACGTGTCAGATGCATAATATGTCTAAC 59.618 37.037 0.00 0.00 0.00 2.34
214 215 7.433680 ACGTGTCAGATGCATAATATGTCTAA 58.566 34.615 0.00 0.00 0.00 2.10
215 216 6.981722 ACGTGTCAGATGCATAATATGTCTA 58.018 36.000 0.00 0.00 0.00 2.59
216 217 5.847304 ACGTGTCAGATGCATAATATGTCT 58.153 37.500 0.00 0.00 0.00 3.41
217 218 7.818493 ATACGTGTCAGATGCATAATATGTC 57.182 36.000 0.00 0.00 0.00 3.06
218 219 7.976175 CCTATACGTGTCAGATGCATAATATGT 59.024 37.037 0.00 1.36 0.00 2.29
219 220 7.043125 GCCTATACGTGTCAGATGCATAATATG 60.043 40.741 0.00 0.00 0.00 1.78
220 221 6.980978 GCCTATACGTGTCAGATGCATAATAT 59.019 38.462 0.00 0.00 0.00 1.28
221 222 6.071616 TGCCTATACGTGTCAGATGCATAATA 60.072 38.462 0.00 0.00 0.00 0.98
222 223 5.171476 GCCTATACGTGTCAGATGCATAAT 58.829 41.667 0.00 0.00 0.00 1.28
223 224 4.038642 TGCCTATACGTGTCAGATGCATAA 59.961 41.667 0.00 0.00 0.00 1.90
224 225 3.572255 TGCCTATACGTGTCAGATGCATA 59.428 43.478 0.00 0.00 0.00 3.14
225 226 2.365293 TGCCTATACGTGTCAGATGCAT 59.635 45.455 0.00 0.00 0.00 3.96
226 227 1.754226 TGCCTATACGTGTCAGATGCA 59.246 47.619 0.00 0.00 0.00 3.96
227 228 2.509052 TGCCTATACGTGTCAGATGC 57.491 50.000 0.00 0.00 0.00 3.91
228 229 4.243007 TCATGCCTATACGTGTCAGATG 57.757 45.455 0.00 0.00 0.00 2.90
229 230 4.524328 TGATCATGCCTATACGTGTCAGAT 59.476 41.667 0.00 0.00 0.00 2.90
230 231 3.888930 TGATCATGCCTATACGTGTCAGA 59.111 43.478 0.00 0.00 0.00 3.27
231 232 3.983988 GTGATCATGCCTATACGTGTCAG 59.016 47.826 0.00 0.00 0.00 3.51
232 233 3.550030 CGTGATCATGCCTATACGTGTCA 60.550 47.826 1.07 0.00 0.00 3.58
233 234 2.980476 CGTGATCATGCCTATACGTGTC 59.020 50.000 1.07 0.00 0.00 3.67
234 235 2.361119 ACGTGATCATGCCTATACGTGT 59.639 45.455 15.01 0.00 42.31 4.49
235 236 3.013276 ACGTGATCATGCCTATACGTG 57.987 47.619 15.01 0.00 42.31 4.49
236 237 3.819337 AGTACGTGATCATGCCTATACGT 59.181 43.478 15.01 11.35 45.29 3.57
237 238 4.421033 AGTACGTGATCATGCCTATACG 57.579 45.455 15.01 5.72 37.54 3.06
238 239 6.594547 TCTCTAGTACGTGATCATGCCTATAC 59.405 42.308 15.01 9.60 0.00 1.47
239 240 6.708285 TCTCTAGTACGTGATCATGCCTATA 58.292 40.000 15.01 7.30 0.00 1.31
240 241 5.561679 TCTCTAGTACGTGATCATGCCTAT 58.438 41.667 15.01 1.72 0.00 2.57
241 242 4.969484 TCTCTAGTACGTGATCATGCCTA 58.031 43.478 15.01 13.26 0.00 3.93
242 243 3.821748 TCTCTAGTACGTGATCATGCCT 58.178 45.455 15.01 12.84 0.00 4.75
243 244 4.541779 CTTCTCTAGTACGTGATCATGCC 58.458 47.826 15.01 6.00 0.00 4.40
244 245 3.978217 GCTTCTCTAGTACGTGATCATGC 59.022 47.826 15.01 0.00 0.00 4.06
245 246 5.175090 TGCTTCTCTAGTACGTGATCATG 57.825 43.478 13.53 13.53 0.00 3.07
246 247 5.836821 TTGCTTCTCTAGTACGTGATCAT 57.163 39.130 0.00 0.00 0.00 2.45
247 248 5.638596 TTTGCTTCTCTAGTACGTGATCA 57.361 39.130 0.00 0.00 0.00 2.92
248 249 7.419204 AGTATTTGCTTCTCTAGTACGTGATC 58.581 38.462 0.00 0.00 0.00 2.92
249 250 7.336161 AGTATTTGCTTCTCTAGTACGTGAT 57.664 36.000 0.00 0.00 0.00 3.06
250 251 6.754702 AGTATTTGCTTCTCTAGTACGTGA 57.245 37.500 0.00 0.00 0.00 4.35
251 252 6.633634 GCTAGTATTTGCTTCTCTAGTACGTG 59.366 42.308 0.00 0.00 33.08 4.49
252 253 6.238703 GGCTAGTATTTGCTTCTCTAGTACGT 60.239 42.308 0.00 0.00 33.08 3.57
253 254 6.144175 GGCTAGTATTTGCTTCTCTAGTACG 58.856 44.000 0.00 0.00 33.08 3.67
254 255 6.919115 GTGGCTAGTATTTGCTTCTCTAGTAC 59.081 42.308 0.00 0.00 33.08 2.73
255 256 6.605995 TGTGGCTAGTATTTGCTTCTCTAGTA 59.394 38.462 0.00 0.00 33.08 1.82
256 257 5.422331 TGTGGCTAGTATTTGCTTCTCTAGT 59.578 40.000 0.00 0.00 33.08 2.57
257 258 5.907207 TGTGGCTAGTATTTGCTTCTCTAG 58.093 41.667 0.00 0.00 33.48 2.43
258 259 5.932619 TGTGGCTAGTATTTGCTTCTCTA 57.067 39.130 0.00 0.00 0.00 2.43
259 260 4.826274 TGTGGCTAGTATTTGCTTCTCT 57.174 40.909 0.00 0.00 0.00 3.10
260 261 4.513318 GGATGTGGCTAGTATTTGCTTCTC 59.487 45.833 0.00 0.00 0.00 2.87
261 262 4.080356 TGGATGTGGCTAGTATTTGCTTCT 60.080 41.667 0.00 0.00 0.00 2.85
262 263 4.199310 TGGATGTGGCTAGTATTTGCTTC 58.801 43.478 0.00 0.00 0.00 3.86
263 264 4.080356 TCTGGATGTGGCTAGTATTTGCTT 60.080 41.667 0.00 0.00 0.00 3.91
264 265 3.455910 TCTGGATGTGGCTAGTATTTGCT 59.544 43.478 0.00 0.00 0.00 3.91
265 266 3.561725 GTCTGGATGTGGCTAGTATTTGC 59.438 47.826 0.00 0.00 0.00 3.68
266 267 5.028549 AGTCTGGATGTGGCTAGTATTTG 57.971 43.478 0.00 0.00 0.00 2.32
267 268 4.965532 AGAGTCTGGATGTGGCTAGTATTT 59.034 41.667 0.00 0.00 0.00 1.40
268 269 4.551671 AGAGTCTGGATGTGGCTAGTATT 58.448 43.478 0.00 0.00 0.00 1.89
269 270 4.191804 AGAGTCTGGATGTGGCTAGTAT 57.808 45.455 0.00 0.00 0.00 2.12
270 271 3.671740 AGAGTCTGGATGTGGCTAGTA 57.328 47.619 0.00 0.00 0.00 1.82
271 272 2.541233 AGAGTCTGGATGTGGCTAGT 57.459 50.000 0.00 0.00 0.00 2.57
272 273 4.037446 GTCTTAGAGTCTGGATGTGGCTAG 59.963 50.000 1.86 0.00 0.00 3.42
273 274 3.954904 GTCTTAGAGTCTGGATGTGGCTA 59.045 47.826 1.86 0.00 0.00 3.93
274 275 2.763448 GTCTTAGAGTCTGGATGTGGCT 59.237 50.000 1.86 0.00 0.00 4.75
275 276 2.497675 TGTCTTAGAGTCTGGATGTGGC 59.502 50.000 1.86 0.00 0.00 5.01
276 277 3.428180 CGTGTCTTAGAGTCTGGATGTGG 60.428 52.174 1.86 0.00 0.00 4.17
277 278 3.191581 ACGTGTCTTAGAGTCTGGATGTG 59.808 47.826 1.86 0.00 0.00 3.21
278 279 3.422796 ACGTGTCTTAGAGTCTGGATGT 58.577 45.455 1.86 0.00 0.00 3.06
279 280 5.759506 ATACGTGTCTTAGAGTCTGGATG 57.240 43.478 1.86 0.00 0.00 3.51
280 281 6.262720 GGTTATACGTGTCTTAGAGTCTGGAT 59.737 42.308 1.86 0.00 0.00 3.41
281 282 5.587844 GGTTATACGTGTCTTAGAGTCTGGA 59.412 44.000 1.86 0.00 0.00 3.86
282 283 5.356190 TGGTTATACGTGTCTTAGAGTCTGG 59.644 44.000 1.86 0.00 0.00 3.86
283 284 6.432607 TGGTTATACGTGTCTTAGAGTCTG 57.567 41.667 1.86 0.00 0.00 3.51
284 285 6.827251 TCATGGTTATACGTGTCTTAGAGTCT 59.173 38.462 0.00 0.00 0.00 3.24
285 286 6.911511 GTCATGGTTATACGTGTCTTAGAGTC 59.088 42.308 0.00 0.00 0.00 3.36
286 287 6.183360 GGTCATGGTTATACGTGTCTTAGAGT 60.183 42.308 0.00 0.00 0.00 3.24
287 288 6.183360 TGGTCATGGTTATACGTGTCTTAGAG 60.183 42.308 0.00 0.00 0.00 2.43
288 289 5.653330 TGGTCATGGTTATACGTGTCTTAGA 59.347 40.000 0.00 0.00 0.00 2.10
289 290 5.898174 TGGTCATGGTTATACGTGTCTTAG 58.102 41.667 0.00 0.00 0.00 2.18
290 291 5.918426 TGGTCATGGTTATACGTGTCTTA 57.082 39.130 0.00 0.00 0.00 2.10
291 292 4.811969 TGGTCATGGTTATACGTGTCTT 57.188 40.909 0.00 0.00 0.00 3.01
292 293 4.161565 ACATGGTCATGGTTATACGTGTCT 59.838 41.667 14.49 0.00 42.91 3.41
293 294 4.439057 ACATGGTCATGGTTATACGTGTC 58.561 43.478 14.49 0.00 42.91 3.67
294 295 4.481368 ACATGGTCATGGTTATACGTGT 57.519 40.909 14.49 0.00 42.91 4.49
295 296 5.597806 AGTACATGGTCATGGTTATACGTG 58.402 41.667 14.49 0.00 42.91 4.49
296 297 5.864418 AGTACATGGTCATGGTTATACGT 57.136 39.130 14.49 0.00 42.91 3.57
297 298 7.210718 TCTAGTACATGGTCATGGTTATACG 57.789 40.000 14.49 0.00 42.91 3.06
298 299 9.826574 TTTTCTAGTACATGGTCATGGTTATAC 57.173 33.333 14.49 8.14 42.91 1.47
323 324 3.330701 TCCCTCTGGATAGTGCACTTTTT 59.669 43.478 27.06 10.61 35.03 1.94
324 325 2.912956 TCCCTCTGGATAGTGCACTTTT 59.087 45.455 27.06 13.42 35.03 2.27
325 326 2.503356 CTCCCTCTGGATAGTGCACTTT 59.497 50.000 27.06 18.20 40.80 2.66
326 327 2.114616 CTCCCTCTGGATAGTGCACTT 58.885 52.381 27.06 12.95 40.80 3.16
327 328 1.690845 CCTCCCTCTGGATAGTGCACT 60.691 57.143 25.12 25.12 40.80 4.40
328 329 0.755686 CCTCCCTCTGGATAGTGCAC 59.244 60.000 9.40 9.40 40.80 4.57
329 330 0.399091 CCCTCCCTCTGGATAGTGCA 60.399 60.000 0.00 0.00 40.80 4.57
330 331 0.105453 TCCCTCCCTCTGGATAGTGC 60.105 60.000 0.00 0.00 40.80 4.40
331 332 2.043227 GTTCCCTCCCTCTGGATAGTG 58.957 57.143 0.00 0.00 40.80 2.74
332 333 1.940957 AGTTCCCTCCCTCTGGATAGT 59.059 52.381 0.00 0.00 40.80 2.12
333 334 2.785357 AGTTCCCTCCCTCTGGATAG 57.215 55.000 0.00 0.00 40.80 2.08
334 335 3.508952 AAAGTTCCCTCCCTCTGGATA 57.491 47.619 0.00 0.00 40.80 2.59
335 336 2.310052 CAAAAGTTCCCTCCCTCTGGAT 59.690 50.000 0.00 0.00 40.80 3.41
336 337 1.705186 CAAAAGTTCCCTCCCTCTGGA 59.295 52.381 0.00 0.00 38.75 3.86
337 338 1.272147 CCAAAAGTTCCCTCCCTCTGG 60.272 57.143 0.00 0.00 0.00 3.86
338 339 1.425448 ACCAAAAGTTCCCTCCCTCTG 59.575 52.381 0.00 0.00 0.00 3.35
339 340 1.705745 GACCAAAAGTTCCCTCCCTCT 59.294 52.381 0.00 0.00 0.00 3.69
340 341 1.705745 AGACCAAAAGTTCCCTCCCTC 59.294 52.381 0.00 0.00 0.00 4.30
341 342 1.834540 AGACCAAAAGTTCCCTCCCT 58.165 50.000 0.00 0.00 0.00 4.20
342 343 3.621558 CATAGACCAAAAGTTCCCTCCC 58.378 50.000 0.00 0.00 0.00 4.30
343 344 3.621558 CCATAGACCAAAAGTTCCCTCC 58.378 50.000 0.00 0.00 0.00 4.30
344 345 3.010250 ACCCATAGACCAAAAGTTCCCTC 59.990 47.826 0.00 0.00 0.00 4.30
345 346 2.993863 ACCCATAGACCAAAAGTTCCCT 59.006 45.455 0.00 0.00 0.00 4.20
346 347 3.089284 CACCCATAGACCAAAAGTTCCC 58.911 50.000 0.00 0.00 0.00 3.97
347 348 3.763057 ACACCCATAGACCAAAAGTTCC 58.237 45.455 0.00 0.00 0.00 3.62
348 349 9.269453 GTATATACACCCATAGACCAAAAGTTC 57.731 37.037 8.05 0.00 0.00 3.01
349 350 8.774183 TGTATATACACCCATAGACCAAAAGTT 58.226 33.333 11.62 0.00 0.00 2.66
350 351 8.326765 TGTATATACACCCATAGACCAAAAGT 57.673 34.615 11.62 0.00 0.00 2.66
400 401 8.981647 CAGGAATTTTCGACTTTTGATTGAATT 58.018 29.630 0.00 0.00 0.00 2.17
401 402 8.359642 TCAGGAATTTTCGACTTTTGATTGAAT 58.640 29.630 0.00 0.00 0.00 2.57
402 403 7.711846 TCAGGAATTTTCGACTTTTGATTGAA 58.288 30.769 0.00 0.00 0.00 2.69
403 404 7.270757 TCAGGAATTTTCGACTTTTGATTGA 57.729 32.000 0.00 0.00 0.00 2.57
404 405 7.928908 TTCAGGAATTTTCGACTTTTGATTG 57.071 32.000 0.00 0.00 0.00 2.67
405 406 8.940768 TTTTCAGGAATTTTCGACTTTTGATT 57.059 26.923 0.00 0.00 0.00 2.57
440 441 9.367444 CGAGTACAATAGAAGGTCAAGTTTATT 57.633 33.333 0.00 0.00 0.00 1.40
441 442 8.529476 ACGAGTACAATAGAAGGTCAAGTTTAT 58.471 33.333 0.00 0.00 0.00 1.40
442 443 7.811236 CACGAGTACAATAGAAGGTCAAGTTTA 59.189 37.037 0.00 0.00 0.00 2.01
443 444 6.645415 CACGAGTACAATAGAAGGTCAAGTTT 59.355 38.462 0.00 0.00 0.00 2.66
444 445 6.015688 TCACGAGTACAATAGAAGGTCAAGTT 60.016 38.462 0.00 0.00 0.00 2.66
445 446 5.475909 TCACGAGTACAATAGAAGGTCAAGT 59.524 40.000 0.00 0.00 0.00 3.16
446 447 5.950883 TCACGAGTACAATAGAAGGTCAAG 58.049 41.667 0.00 0.00 0.00 3.02
447 448 5.708697 TCTCACGAGTACAATAGAAGGTCAA 59.291 40.000 0.00 0.00 0.00 3.18
448 449 5.250982 TCTCACGAGTACAATAGAAGGTCA 58.749 41.667 0.00 0.00 0.00 4.02
449 450 5.814764 TCTCACGAGTACAATAGAAGGTC 57.185 43.478 0.00 0.00 0.00 3.85
450 451 6.585695 TTTCTCACGAGTACAATAGAAGGT 57.414 37.500 0.00 0.00 0.00 3.50
451 452 9.582431 TTATTTTCTCACGAGTACAATAGAAGG 57.418 33.333 0.00 0.00 0.00 3.46
456 457 9.878667 TGGATTTATTTTCTCACGAGTACAATA 57.121 29.630 0.00 0.00 0.00 1.90
457 458 8.665685 GTGGATTTATTTTCTCACGAGTACAAT 58.334 33.333 0.00 0.00 0.00 2.71
458 459 7.658167 TGTGGATTTATTTTCTCACGAGTACAA 59.342 33.333 0.00 0.00 0.00 2.41
459 460 7.156000 TGTGGATTTATTTTCTCACGAGTACA 58.844 34.615 0.00 0.00 0.00 2.90
460 461 7.591006 TGTGGATTTATTTTCTCACGAGTAC 57.409 36.000 0.00 0.00 0.00 2.73
461 462 8.610248 TTTGTGGATTTATTTTCTCACGAGTA 57.390 30.769 0.00 0.00 0.00 2.59
462 463 7.504924 TTTGTGGATTTATTTTCTCACGAGT 57.495 32.000 0.00 0.00 0.00 4.18
463 464 8.795786 TTTTTGTGGATTTATTTTCTCACGAG 57.204 30.769 0.00 0.00 0.00 4.18
515 516 9.830975 ACACTATTTTAGCCAAAAATTTGTCTT 57.169 25.926 11.38 0.00 43.75 3.01
516 517 9.260002 CACACTATTTTAGCCAAAAATTTGTCT 57.740 29.630 11.38 0.28 43.75 3.41
517 518 9.255304 TCACACTATTTTAGCCAAAAATTTGTC 57.745 29.630 11.38 0.00 43.75 3.18
518 519 9.606631 TTCACACTATTTTAGCCAAAAATTTGT 57.393 25.926 11.38 11.68 43.75 2.83
523 524 9.906660 CACTATTCACACTATTTTAGCCAAAAA 57.093 29.630 0.00 0.00 41.21 1.94
524 525 9.290988 TCACTATTCACACTATTTTAGCCAAAA 57.709 29.630 0.00 0.00 38.00 2.44
525 526 8.726988 GTCACTATTCACACTATTTTAGCCAAA 58.273 33.333 0.00 0.00 0.00 3.28
526 527 7.335924 GGTCACTATTCACACTATTTTAGCCAA 59.664 37.037 0.00 0.00 0.00 4.52
527 528 6.821665 GGTCACTATTCACACTATTTTAGCCA 59.178 38.462 0.00 0.00 0.00 4.75
528 529 7.048512 AGGTCACTATTCACACTATTTTAGCC 58.951 38.462 0.00 0.00 0.00 3.93
529 530 9.765795 ATAGGTCACTATTCACACTATTTTAGC 57.234 33.333 0.00 0.00 36.51 3.09
536 537 9.582648 TGCTATTATAGGTCACTATTCACACTA 57.417 33.333 1.12 0.00 40.35 2.74
537 538 8.478775 TGCTATTATAGGTCACTATTCACACT 57.521 34.615 1.12 0.00 40.35 3.55
538 539 9.542462 TTTGCTATTATAGGTCACTATTCACAC 57.458 33.333 1.12 0.00 40.35 3.82
565 566 9.674068 GGCAAAAGGATAATTAACCCAATTTTA 57.326 29.630 8.09 0.00 37.93 1.52
566 567 7.613801 GGGCAAAAGGATAATTAACCCAATTTT 59.386 33.333 8.09 6.34 37.93 1.82
567 568 7.036935 AGGGCAAAAGGATAATTAACCCAATTT 60.037 33.333 8.09 5.38 37.93 1.82
568 569 6.446759 AGGGCAAAAGGATAATTAACCCAATT 59.553 34.615 8.09 0.00 40.10 2.32
569 570 5.970021 AGGGCAAAAGGATAATTAACCCAAT 59.030 36.000 8.09 0.00 37.28 3.16
607 608 0.879765 CTGAGGGCAAAACTGAGCAG 59.120 55.000 0.00 0.00 0.00 4.24
631 632 2.485302 GGGGCAAAACTGAGCACAATTT 60.485 45.455 0.00 0.00 35.37 1.82
983 986 0.740868 CATGGAGCTCGAAGCCGAAA 60.741 55.000 7.83 0.00 43.77 3.46
991 994 1.107114 GAGGAAGACATGGAGCTCGA 58.893 55.000 7.83 3.70 0.00 4.04
1112 1116 2.564062 ACGATTCTGGTTCCTCGGTTTA 59.436 45.455 0.00 0.00 35.52 2.01
1114 1118 0.974383 ACGATTCTGGTTCCTCGGTT 59.026 50.000 0.00 0.00 35.52 4.44
1135 1139 0.663269 CTCGCTGCACACGTAGAACA 60.663 55.000 0.00 0.00 0.00 3.18
1226 1230 1.200716 CATGTCACCTGCATGAACACC 59.799 52.381 0.00 0.00 44.60 4.16
1295 1299 4.660168 ACCATTCTTCATGCTCTTCTTGT 58.340 39.130 0.00 0.00 0.00 3.16
1697 1702 7.874016 AGCTGCATTTCATTGATCAAAAGTTTA 59.126 29.630 13.09 0.00 0.00 2.01
1811 1816 6.855836 TGAATGGTTCTAATTGAATGCAGTC 58.144 36.000 7.33 7.33 36.99 3.51
1819 1824 4.946160 ACCCCTGAATGGTTCTAATTGA 57.054 40.909 0.00 0.00 29.75 2.57
1827 1832 5.117994 CGCAAGAAAACCCCTGAATGGTT 62.118 47.826 0.00 0.00 44.61 3.67
1828 1833 1.970640 GCAAGAAAACCCCTGAATGGT 59.029 47.619 0.00 0.00 37.85 3.55
1996 2001 9.829507 ACATTTTGGTCTTTGATTTAAATCACA 57.170 25.926 26.69 20.43 44.54 3.58
2213 2219 1.207329 CTGTCCTAGTGGTTACCAGCC 59.793 57.143 3.45 0.00 32.34 4.85
2224 2230 2.826488 AGTCTTGCCATCTGTCCTAGT 58.174 47.619 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.