AutoCloner

Multiple sequence alignment - TraesCS6B01G049300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6B01G049300	chr6B	100.000	2435	0	0	1	2435	29043764	29046198	0.000000e+00	4497.0
1	TraesCS6B01G049300	chr6B	89.138	847	69	17	737	1569	59298781	59299618	0.000000e+00	1033.0
2	TraesCS6B01G049300	chr6B	85.423	1029	93	34	743	1749	28722211	28723204	0.000000e+00	1016.0
3	TraesCS6B01G049300	chr6B	85.149	1010	97	28	761	1749	28942314	28943291	0.000000e+00	985.0
4	TraesCS6B01G049300	chr6B	84.151	530	59	10	5	525	28721251	28721764	7.820000e-135	490.0
5	TraesCS6B01G049300	chr6B	83.752	517	77	5	5	518	28931474	28931986	1.310000e-132	483.0
6	TraesCS6B01G049300	chr6B	80.577	520	70	11	12	523	28514585	28514089	2.960000e-99	372.0
7	TraesCS6B01G049300	chr6B	85.286	367	39	11	2069	2434	28512231	28511879	4.950000e-97	364.0
8	TraesCS6B01G049300	chr6B	86.454	251	28	5	1822	2066	28512520	28512270	1.110000e-68	270.0
9	TraesCS6B01G049300	chr6B	83.448	290	37	8	1862	2146	28723228	28723511	2.400000e-65	259.0
10	TraesCS6B01G049300	chr6D	87.675	1144	88	39	657	1765	16514273	16515398	0.000000e+00	1282.0
11	TraesCS6B01G049300	chr6D	89.511	982	60	26	752	1707	16386781	16385817	0.000000e+00	1203.0
12	TraesCS6B01G049300	chr6D	89.676	678	49	15	1765	2435	16515451	16516114	0.000000e+00	845.0
13	TraesCS6B01G049300	chr6D	87.954	523	51	6	5	525	16513432	16513944	7.450000e-170	606.0
14	TraesCS6B01G049300	chr6D	85.390	308	26	6	1766	2066	16385665	16385370	3.930000e-78	302.0
15	TraesCS6B01G049300	chr6D	91.429	175	11	3	2069	2242	16385329	16385158	1.130000e-58	237.0
16	TraesCS6B01G049300	chr6D	80.240	167	22	6	2269	2434	16385160	16385004	5.500000e-22	115.0
17	TraesCS6B01G049300	chr6A	88.038	1045	84	24	751	1765	16705105	16706138	0.000000e+00	1199.0
18	TraesCS6B01G049300	chr6A	88.054	971	71	28	756	1707	16655972	16655028	0.000000e+00	1109.0
19	TraesCS6B01G049300	chr6A	93.267	505	29	2	1772	2275	16706197	16706697	0.000000e+00	739.0
20	TraesCS6B01G049300	chr6A	85.502	538	62	9	5	535	16704115	16704643	4.580000e-152	547.0
21	TraesCS6B01G049300	chr6A	86.774	310	35	4	1765	2070	16654808	16654501	8.340000e-90	340.0
22	TraesCS6B01G049300	chr6A	92.857	42	3	0	654	695	16705024	16705065	7.270000e-06	62.1
23	TraesCS6B01G049300	chr1B	88.023	1052	69	30	729	1765	587501558	587500549	0.000000e+00	1192.0
24	TraesCS6B01G049300	chr1B	90.099	303	18	6	1765	2055	587500517	587500215	1.370000e-102	383.0
25	TraesCS6B01G049300	chr1B	88.258	264	13	7	1509	1765	652543636	652543888	1.420000e-77	300.0
26	TraesCS6B01G049300	chr1B	90.045	221	14	1	1765	1977	652543943	652544163	1.840000e-71	279.0
27	TraesCS6B01G049300	chr3A	85.286	1101	104	36	661	1736	66253736	66254803	0.000000e+00	1083.0
28	TraesCS6B01G049300	chr3A	87.305	512	55	3	14	525	66252737	66253238	5.840000e-161	577.0
29	TraesCS6B01G049300	chr3A	86.985	461	42	11	1878	2329	66254805	66255256	1.000000e-138	503.0
30	TraesCS6B01G049300	chrUn	81.905	210	16	16	1499	1707	163376400	163376588	9.010000e-35	158.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6B01G049300	chr6B	29043764	29046198	2434	False	4497.000000	4497	100.000000	1	2435	1	chr6B.!!$F3	2434
1	TraesCS6B01G049300	chr6B	59298781	59299618	837	False	1033.000000	1033	89.138000	737	1569	1	chr6B.!!$F4	832
2	TraesCS6B01G049300	chr6B	28942314	28943291	977	False	985.000000	985	85.149000	761	1749	1	chr6B.!!$F2	988
3	TraesCS6B01G049300	chr6B	28721251	28723511	2260	False	588.333333	1016	84.340667	5	2146	3	chr6B.!!$F5	2141
4	TraesCS6B01G049300	chr6B	28931474	28931986	512	False	483.000000	483	83.752000	5	518	1	chr6B.!!$F1	513
5	TraesCS6B01G049300	chr6B	28511879	28514585	2706	True	335.333333	372	84.105667	12	2434	3	chr6B.!!$R1	2422
6	TraesCS6B01G049300	chr6D	16513432	16516114	2682	False	911.000000	1282	88.435000	5	2435	3	chr6D.!!$F1	2430
7	TraesCS6B01G049300	chr6D	16385004	16386781	1777	True	464.250000	1203	86.642500	752	2434	4	chr6D.!!$R1	1682
8	TraesCS6B01G049300	chr6A	16654501	16655972	1471	True	724.500000	1109	87.414000	756	2070	2	chr6A.!!$R1	1314
9	TraesCS6B01G049300	chr6A	16704115	16706697	2582	False	636.775000	1199	89.916000	5	2275	4	chr6A.!!$F1	2270
10	TraesCS6B01G049300	chr1B	587500215	587501558	1343	True	787.500000	1192	89.061000	729	2055	2	chr1B.!!$R1	1326
11	TraesCS6B01G049300	chr1B	652543636	652544163	527	False	289.500000	300	89.151500	1509	1977	2	chr1B.!!$F1	468
12	TraesCS6B01G049300	chr3A	66252737	66255256	2519	False	721.000000	1083	86.525333	14	2329	3	chr3A.!!$F1	2315

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
434	451	0.31179	CTTGGTGTTGCGTGCATTCT	59.688	50.0	0.0	0.0	0.0	2.4	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2262	3133	0.693622	TGGCGAATGGTGAAGGGTTA	59.306	50.0	0.0	0.0	0.0	2.85	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
128	131	2.809601	CGTGGTGCGTGCTCCTAC	60.810	66.667	13.49	9.15	35.54	3.18
208	212	2.499756	TAAGCGAGTGGTGCGATGCA	62.500	55.000	0.00	0.00	37.44	3.96
245	255	0.903454	GGGTTTCTCGAGTCCTGGGA	60.903	60.000	13.13	0.00	0.00	4.37
268	281	4.778143	AGGGTGATGCCGGCGAAC	62.778	66.667	23.90	19.03	38.44	3.95
279	292	0.665369	CCGGCGAACGTTGTACTCTT	60.665	55.000	9.30	0.00	42.24	2.85
348	365	1.003696	CAGTCCTCACTTTTCCTCCCC	59.996	57.143	0.00	0.00	0.00	4.81
351	368	0.321653	CCTCACTTTTCCTCCCCACG	60.322	60.000	0.00	0.00	0.00	4.94
427	444	1.226945	GCTTTGCTTGGTGTTGCGT	60.227	52.632	0.00	0.00	0.00	5.24
434	451	0.311790	CTTGGTGTTGCGTGCATTCT	59.688	50.000	0.00	0.00	0.00	2.40
463	480	0.960364	GCATCTTTTCGGAGGTGCCA	60.960	55.000	7.97	0.00	45.83	4.92
464	481	0.804989	CATCTTTTCGGAGGTGCCAC	59.195	55.000	0.00	0.00	35.94	5.01
525	550	0.463116	AGAGTGTTTTCGCCCGTGTT	60.463	50.000	0.00	0.00	0.00	3.32
716	1175	4.409218	GAGCGTACGCCGTCCACA	62.409	66.667	34.88	0.00	43.17	4.17
717	1176	4.712425	AGCGTACGCCGTCCACAC	62.712	66.667	34.88	6.12	43.17	3.82
727	1186	4.736896	GTCCACACGCGGGAGGTC	62.737	72.222	24.37	15.59	34.44	3.85
735	1194	4.477975	GCGGGAGGTCGTCGTCTG	62.478	72.222	2.61	0.00	0.00	3.51
736	1195	4.477975	CGGGAGGTCGTCGTCTGC	62.478	72.222	2.61	0.00	0.00	4.26
737	1196	4.131088	GGGAGGTCGTCGTCTGCC	62.131	72.222	11.38	11.38	34.48	4.85
738	1197	4.477975	GGAGGTCGTCGTCTGCCG	62.478	72.222	2.61	0.00	38.13	5.69
749	1255	4.720902	TCTGCCGTCCCGACCGTA	62.721	66.667	0.00	0.00	0.00	4.02
853	1359	2.345244	GCCATCGATCCGAGGCAT	59.655	61.111	17.19	0.00	43.80	4.40
912	1434	3.861797	CATAACCTCGCCGCCCCT	61.862	66.667	0.00	0.00	0.00	4.79
921	1443	3.547513	GCCGCCCCTATCCGTCTT	61.548	66.667	0.00	0.00	0.00	3.01
969	1506	0.899717	CACATCCCACCCAAACCCAG	60.900	60.000	0.00	0.00	0.00	4.45
998	1538	3.357079	GCTCCAACCACCAGCACG	61.357	66.667	0.00	0.00	33.06	5.34
1034	1577	2.943978	CGGAGAAGAAGCCGGTGGT	61.944	63.158	1.90	0.00	43.67	4.16
1215	1761	3.687102	CAGGTGCACCCGGACGTA	61.687	66.667	32.29	0.00	38.74	3.57
1425	1971	1.227853	GGCCGTCACCAAGTTCACT	60.228	57.895	0.00	0.00	0.00	3.41
1437	1991	2.932614	CAAGTTCACTTCATCCTAGGCG	59.067	50.000	2.96	0.00	33.11	5.52
1495	2060	2.416547	GTGTATGTAGTTGGCAGCAGTG	59.583	50.000	3.63	0.00	0.00	3.66
1598	2175	0.104855	TGCTTGTCTGTCGCTTCAGT	59.895	50.000	5.23	0.00	36.85	3.41
1600	2177	1.869754	GCTTGTCTGTCGCTTCAGTGA	60.870	52.381	0.00	0.00	36.85	3.41
1602	2179	3.838120	CTTGTCTGTCGCTTCAGTGATA	58.162	45.455	0.00	0.00	36.88	2.15
1603	2180	3.494045	TGTCTGTCGCTTCAGTGATAG	57.506	47.619	7.60	7.60	42.66	2.08
1604	2181	2.189342	GTCTGTCGCTTCAGTGATAGC	58.811	52.381	13.93	13.93	41.57	2.97
1605	2182	2.095461	TCTGTCGCTTCAGTGATAGCT	58.905	47.619	18.72	0.00	41.57	3.32
1606	2183	2.493675	TCTGTCGCTTCAGTGATAGCTT	59.506	45.455	18.72	0.00	41.57	3.74
1607	2184	2.602211	CTGTCGCTTCAGTGATAGCTTG	59.398	50.000	18.72	9.31	37.07	4.01
1608	2185	2.029020	TGTCGCTTCAGTGATAGCTTGT	60.029	45.455	18.72	0.00	36.88	3.16
1609	2186	2.346847	GTCGCTTCAGTGATAGCTTGTG	59.653	50.000	18.72	8.57	36.88	3.33
1610	2187	2.029020	TCGCTTCAGTGATAGCTTGTGT	60.029	45.455	18.72	0.00	35.25	3.72
1615	2192	3.069289	TCAGTGATAGCTTGTGTGCTTG	58.931	45.455	0.00	0.00	43.74	4.01
1617	2194	3.070018	AGTGATAGCTTGTGTGCTTGAC	58.930	45.455	0.00	0.00	43.74	3.18
1618	2195	3.070018	GTGATAGCTTGTGTGCTTGACT	58.930	45.455	0.00	0.00	43.74	3.41
1723	2339	3.066621	TGTGATTGTTTCCAAGTCTGCAC	59.933	43.478	0.00	0.00	33.17	4.57
1820	2626	1.680338	AAAACTGAAGTTGGCGAGCT	58.320	45.000	0.00	0.00	38.44	4.09
1841	2647	7.148507	CGAGCTTTGTTAATTTCTGACAGATCT	60.149	37.037	5.87	0.00	0.00	2.75
1854	2660	7.264373	TCTGACAGATCTTTCCAAGTTTTTC	57.736	36.000	0.00	0.00	0.00	2.29
1858	2664	5.899547	ACAGATCTTTCCAAGTTTTTCCCTT	59.100	36.000	0.00	0.00	0.00	3.95
1870	2676	5.516044	AGTTTTTCCCTTAGTGGACTTGTT	58.484	37.500	0.00	0.00	38.35	2.83
1886	2692	6.006449	GGACTTGTTATCCATATGGCAAGAT	58.994	40.000	30.74	20.73	37.39	2.40
2289	3160	1.176527	CACCATTCGCCATCTTTGGT	58.823	50.000	0.00	0.00	45.57	3.67
2333	3204	9.823647	ATTTGTGTTAGATGATGTTACTAGAGG	57.176	33.333	0.00	0.00	0.00	3.69
2334	3205	6.806751	TGTGTTAGATGATGTTACTAGAGGC	58.193	40.000	0.00	0.00	0.00	4.70
2335	3206	6.183360	TGTGTTAGATGATGTTACTAGAGGCC	60.183	42.308	0.00	0.00	0.00	5.19
2336	3207	6.041069	GTGTTAGATGATGTTACTAGAGGCCT	59.959	42.308	3.86	3.86	0.00	5.19
2337	3208	6.265649	TGTTAGATGATGTTACTAGAGGCCTC	59.734	42.308	26.22	26.22	0.00	4.70
2338	3209	4.809193	AGATGATGTTACTAGAGGCCTCA	58.191	43.478	33.90	18.60	0.00	3.86
2339	3210	5.401750	AGATGATGTTACTAGAGGCCTCAT	58.598	41.667	33.90	20.72	0.00	2.90
2340	3211	4.944619	TGATGTTACTAGAGGCCTCATG	57.055	45.455	33.90	25.87	0.00	3.07
2341	3212	4.290093	TGATGTTACTAGAGGCCTCATGT	58.710	43.478	33.90	29.53	0.00	3.21
2342	3213	4.716784	TGATGTTACTAGAGGCCTCATGTT	59.283	41.667	33.90	16.30	0.00	2.71
2343	3214	5.897250	TGATGTTACTAGAGGCCTCATGTTA	59.103	40.000	33.90	21.22	0.00	2.41
2344	3215	5.593679	TGTTACTAGAGGCCTCATGTTAC	57.406	43.478	33.90	29.22	0.00	2.50
2345	3216	5.269991	TGTTACTAGAGGCCTCATGTTACT	58.730	41.667	33.90	14.38	0.00	2.24
2346	3217	6.429151	TGTTACTAGAGGCCTCATGTTACTA	58.571	40.000	33.90	19.58	0.00	1.82
2354	3225	6.266558	AGAGGCCTCATGTTACTATCTTGTAG	59.733	42.308	33.90	0.00	0.00	2.74
2378	3258	1.352114	TGTGCCGCGTGAAATAGTAC	58.648	50.000	4.92	0.00	0.00	2.73
2387	3267	3.432252	GCGTGAAATAGTACTGTTGCTGT	59.568	43.478	11.29	0.00	0.00	4.40
2407	3287	9.638239	TTGCTGTTTAAATTAATGATCAAGGTC	57.362	29.630	0.00	0.00	0.00	3.85

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
3	4	1.804326	CACCTTCTCGTTACGCCCG	60.804	63.158	0.00	0.00	0.00	6.13
9	10	1.346395	ACCATGTGCACCTTCTCGTTA	59.654	47.619	15.69	0.00	0.00	3.18
62	63	3.078836	GCCCTACTACACCGGCCA	61.079	66.667	0.00	0.00	35.23	5.36
146	149	1.222300	TTACGTCGCAAAGTGCACAT	58.778	45.000	21.04	3.48	45.36	3.21
164	168	4.625800	GCGTCAAGCTCCTCCATT	57.374	55.556	0.00	0.00	44.04	3.16
208	212	0.625849	CCCCCTAACAAGCCATCTGT	59.374	55.000	0.00	0.00	0.00	3.41
245	255	2.671070	CGGCATCACCCTCCAAGT	59.329	61.111	0.00	0.00	33.26	3.16
279	292	2.411701	CTCGAAGGCGCCATCGTA	59.588	61.111	41.89	30.16	38.18	3.43
348	365	0.788391	GTTTTCCACCGTAGCTCGTG	59.212	55.000	0.00	0.00	37.94	4.35
377	394	2.494073	GCCATCACCCAATTCGGTAAAA	59.506	45.455	0.00	0.00	33.67	1.52
427	444	2.793288	TGCCATCAAGAGAGAATGCA	57.207	45.000	0.00	0.00	0.00	3.96
434	451	3.055167	TCCGAAAAGATGCCATCAAGAGA	60.055	43.478	7.56	0.00	0.00	3.10
463	480	2.584391	GCCACAAGTCCCTCCGAGT	61.584	63.158	0.00	0.00	0.00	4.18
464	481	1.831652	AAGCCACAAGTCCCTCCGAG	61.832	60.000	0.00	0.00	0.00	4.63
525	550	4.870123	ACACCTCAAATAAAGCAATGCA	57.130	36.364	8.35	0.00	0.00	3.96
584	1027	2.643551	ACCATTGATTAGAACCCTGCG	58.356	47.619	0.00	0.00	0.00	5.18
643	1086	3.697045	TGAAAAGAGAGTTCCCGCAAAAA	59.303	39.130	0.00	0.00	0.00	1.94
645	1088	2.925724	TGAAAAGAGAGTTCCCGCAAA	58.074	42.857	0.00	0.00	0.00	3.68
646	1089	2.631160	TGAAAAGAGAGTTCCCGCAA	57.369	45.000	0.00	0.00	0.00	4.85
647	1090	2.426522	CATGAAAAGAGAGTTCCCGCA	58.573	47.619	0.00	0.00	0.00	5.69
650	1093	3.688673	CAGAGCATGAAAAGAGAGTTCCC	59.311	47.826	0.00	0.00	0.00	3.97
651	1094	3.126686	GCAGAGCATGAAAAGAGAGTTCC	59.873	47.826	0.00	0.00	0.00	3.62
652	1095	3.750130	TGCAGAGCATGAAAAGAGAGTTC	59.250	43.478	0.00	0.00	31.71	3.01
736	1195	2.633657	CGTATACGGTCGGGACGG	59.366	66.667	17.61	5.01	44.47	4.79
737	1196	0.316196	GAACGTATACGGTCGGGACG	60.316	60.000	26.08	2.27	46.59	4.79
738	1197	3.533913	GAACGTATACGGTCGGGAC	57.466	57.895	26.08	5.38	46.59	4.46
744	1250	0.099436	GTGGCGAGAACGTATACGGT	59.901	55.000	27.62	23.19	44.92	4.83
793	1299	0.107703	TGATGCTTGGGATGGACGAC	60.108	55.000	0.00	0.00	0.00	4.34
794	1300	0.107703	GTGATGCTTGGGATGGACGA	60.108	55.000	0.00	0.00	0.00	4.20
853	1359	1.612146	TGGTTGGCGGAGAGGATGA	60.612	57.895	0.00	0.00	0.00	2.92
912	1434	1.017177	GCGGTGTGCAAAGACGGATA	61.017	55.000	3.39	0.00	45.45	2.59
1425	1971	0.892755	ACGACAACGCCTAGGATGAA	59.107	50.000	14.75	0.00	43.96	2.57
1437	1991	4.904116	TCAACTCATGAAACAACGACAAC	58.096	39.130	0.00	0.00	34.30	3.32
1495	2060	9.979270	CAATTCTTACAGAGATTGTAACATCAC	57.021	33.333	0.00	0.00	45.07	3.06
1598	2175	3.007290	AGAGTCAAGCACACAAGCTATCA	59.993	43.478	0.00	0.00	45.89	2.15
1600	2177	3.260380	AGAGAGTCAAGCACACAAGCTAT	59.740	43.478	0.00	0.00	45.89	2.97
1603	2180	1.876322	AGAGAGTCAAGCACACAAGC	58.124	50.000	0.00	0.00	0.00	4.01
1604	2181	3.726607	AGAAGAGAGTCAAGCACACAAG	58.273	45.455	0.00	0.00	0.00	3.16
1605	2182	3.827008	AGAAGAGAGTCAAGCACACAA	57.173	42.857	0.00	0.00	0.00	3.33
1606	2183	3.132824	TCAAGAAGAGAGTCAAGCACACA	59.867	43.478	0.00	0.00	0.00	3.72
1607	2184	3.722147	TCAAGAAGAGAGTCAAGCACAC	58.278	45.455	0.00	0.00	0.00	3.82
1608	2185	4.313282	CATCAAGAAGAGAGTCAAGCACA	58.687	43.478	0.00	0.00	0.00	4.57
1609	2186	3.124976	GCATCAAGAAGAGAGTCAAGCAC	59.875	47.826	0.00	0.00	0.00	4.40
1610	2187	3.332919	GCATCAAGAAGAGAGTCAAGCA	58.667	45.455	0.00	0.00	0.00	3.91
1615	2192	4.699257	ACAAATGGCATCAAGAAGAGAGTC	59.301	41.667	0.00	0.00	0.00	3.36
1617	2194	5.640189	AACAAATGGCATCAAGAAGAGAG	57.360	39.130	0.00	0.00	0.00	3.20
1618	2195	7.177216	ACATAAACAAATGGCATCAAGAAGAGA	59.823	33.333	0.00	0.00	0.00	3.10
1820	2626	9.130661	TGGAAAGATCTGTCAGAAATTAACAAA	57.869	29.630	14.96	0.00	0.00	2.83
1841	2647	5.361571	GTCCACTAAGGGAAAAACTTGGAAA	59.638	40.000	0.00	0.00	39.05	3.13
1854	2660	4.837093	TGGATAACAAGTCCACTAAGGG	57.163	45.455	0.00	0.00	40.72	3.95
2030	2858	2.923121	TGATGGTTCCATCTAGCTTGC	58.077	47.619	25.77	5.07	42.24	4.01
2262	3133	0.693622	TGGCGAATGGTGAAGGGTTA	59.306	50.000	0.00	0.00	0.00	2.85
2267	3138	2.159338	CCAAAGATGGCGAATGGTGAAG	60.159	50.000	0.00	0.00	40.58	3.02
2289	3160	1.568504	ATGAGGAACAGCTCCCGTAA	58.431	50.000	0.00	0.00	46.81	3.18
2330	3201	5.283457	ACAAGATAGTAACATGAGGCCTC	57.717	43.478	26.78	26.78	0.00	4.70
2331	3202	5.305644	CCTACAAGATAGTAACATGAGGCCT	59.694	44.000	3.86	3.86	0.00	5.19
2332	3203	5.304614	TCCTACAAGATAGTAACATGAGGCC	59.695	44.000	0.00	0.00	0.00	5.19
2333	3204	6.041069	ACTCCTACAAGATAGTAACATGAGGC	59.959	42.308	0.00	0.00	0.00	4.70
2334	3205	7.589958	ACTCCTACAAGATAGTAACATGAGG	57.410	40.000	0.00	0.00	0.00	3.86
2335	3206	8.470805	ACAACTCCTACAAGATAGTAACATGAG	58.529	37.037	0.00	0.00	0.00	2.90
2336	3207	8.251026	CACAACTCCTACAAGATAGTAACATGA	58.749	37.037	0.00	0.00	0.00	3.07
2337	3208	7.010552	GCACAACTCCTACAAGATAGTAACATG	59.989	40.741	0.00	0.00	0.00	3.21
2338	3209	7.042335	GCACAACTCCTACAAGATAGTAACAT	58.958	38.462	0.00	0.00	0.00	2.71
2339	3210	6.395629	GCACAACTCCTACAAGATAGTAACA	58.604	40.000	0.00	0.00	0.00	2.41
2340	3211	5.811100	GGCACAACTCCTACAAGATAGTAAC	59.189	44.000	0.00	0.00	0.00	2.50
2341	3212	5.393787	CGGCACAACTCCTACAAGATAGTAA	60.394	44.000	0.00	0.00	0.00	2.24
2342	3213	4.097437	CGGCACAACTCCTACAAGATAGTA	59.903	45.833	0.00	0.00	0.00	1.82
2343	3214	3.119101	CGGCACAACTCCTACAAGATAGT	60.119	47.826	0.00	0.00	0.00	2.12
2344	3215	3.448686	CGGCACAACTCCTACAAGATAG	58.551	50.000	0.00	0.00	0.00	2.08
2345	3216	2.418197	GCGGCACAACTCCTACAAGATA	60.418	50.000	0.00	0.00	0.00	1.98
2346	3217	1.676014	GCGGCACAACTCCTACAAGAT	60.676	52.381	0.00	0.00	0.00	2.40
2354	3225	1.852067	ATTTCACGCGGCACAACTCC	61.852	55.000	12.47	0.00	0.00	3.85
2407	3287	2.081462	TCTGATGTGACATGCAAGCAG	58.919	47.619	1.23	3.76	0.00	4.24

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.