Multiple sequence alignment - TraesCS6B01G049100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G049100 chr6B 100.000 2626 0 0 1 2626 28941524 28944149 0.000000e+00 4850.0
1 TraesCS6B01G049100 chr6B 95.426 1618 46 15 683 2298 28722141 28723732 0.000000e+00 2553.0
2 TraesCS6B01G049100 chr6B 86.787 1105 78 37 683 1766 28513734 28512677 0.000000e+00 1170.0
3 TraesCS6B01G049100 chr6B 85.149 1010 97 28 791 1768 29044524 29045512 0.000000e+00 985.0
4 TraesCS6B01G049100 chr6B 88.207 831 72 18 791 1612 59298805 59299618 0.000000e+00 968.0
5 TraesCS6B01G049100 chr6B 92.800 250 11 3 2373 2615 28723731 28723980 3.210000e-94 355.0
6 TraesCS6B01G049100 chr6B 92.035 226 11 4 2374 2596 59300314 59300535 7.060000e-81 311.0
7 TraesCS6B01G049100 chr6B 82.124 386 45 18 1794 2162 28512478 28512100 2.540000e-80 309.0
8 TraesCS6B01G049100 chr6B 91.351 185 10 3 2436 2615 28511401 28511218 5.610000e-62 248.0
9 TraesCS6B01G049100 chr3A 91.198 977 70 13 791 1758 66253837 66254806 0.000000e+00 1314.0
10 TraesCS6B01G049100 chr3A 88.727 275 22 4 1808 2077 66254805 66255075 7.010000e-86 327.0
11 TraesCS6B01G049100 chr3A 98.462 65 1 0 2098 2162 66255065 66255129 5.940000e-22 115.0
12 TraesCS6B01G049100 chr6D 85.517 1084 88 36 738 1776 16514334 16515393 0.000000e+00 1068.0
13 TraesCS6B01G049100 chr6D 86.359 1019 86 30 791 1768 16386772 16385766 0.000000e+00 1062.0
14 TraesCS6B01G049100 chr6D 88.194 288 20 4 2341 2626 16384474 16384199 5.420000e-87 331.0
15 TraesCS6B01G049100 chr6D 79.487 390 45 20 1792 2162 16385571 16385198 7.260000e-61 244.0
16 TraesCS6B01G049100 chr6D 81.695 295 41 9 1792 2077 16515546 16515836 1.570000e-57 233.0
17 TraesCS6B01G049100 chr6D 87.578 161 16 2 46 205 438524659 438524502 1.610000e-42 183.0
18 TraesCS6B01G049100 chr6A 86.278 1013 82 35 744 1731 16656003 16655023 0.000000e+00 1048.0
19 TraesCS6B01G049100 chr6A 85.548 1031 92 35 791 1776 16705115 16706133 0.000000e+00 1026.0
20 TraesCS6B01G049100 chr6A 81.137 387 47 21 1792 2162 16654711 16654335 1.190000e-73 287.0
21 TraesCS6B01G049100 chr6A 91.111 90 5 2 1988 2077 16654476 16654390 4.590000e-23 119.0
22 TraesCS6B01G049100 chr6A 96.721 61 2 0 2555 2615 16456679 16456739 4.620000e-18 102.0
23 TraesCS6B01G049100 chr7B 86.196 623 56 12 1 595 210364246 210364866 0.000000e+00 647.0
24 TraesCS6B01G049100 chr7B 91.503 306 25 1 1 305 8999836 8999531 1.120000e-113 420.0
25 TraesCS6B01G049100 chr7B 85.393 356 39 10 250 593 8999549 8999195 8.940000e-95 357.0
26 TraesCS6B01G049100 chrUn 82.742 620 70 13 1 593 23526398 23525789 3.870000e-143 518.0
27 TraesCS6B01G049100 chrUn 79.528 254 19 19 1534 1768 163376400 163376639 1.630000e-32 150.0
28 TraesCS6B01G049100 chr1B 88.043 276 30 3 31 305 426689149 426688876 9.070000e-85 324.0
29 TraesCS6B01G049100 chr1B 83.333 204 22 4 1795 1987 587500417 587500215 7.470000e-41 178.0
30 TraesCS6B01G049100 chr1B 100.000 31 0 0 565 595 599249069 599249039 1.020000e-04 58.4
31 TraesCS6B01G049100 chr3B 79.000 100 10 5 510 598 306578178 306578079 1.020000e-04 58.4
32 TraesCS6B01G049100 chr2B 90.909 44 3 1 566 608 754887680 754887637 1.020000e-04 58.4
33 TraesCS6B01G049100 chr2B 94.118 34 2 0 560 593 79308437 79308470 5.000000e-03 52.8
34 TraesCS6B01G049100 chr2D 100.000 30 0 0 566 595 305995848 305995877 3.650000e-04 56.5
35 TraesCS6B01G049100 chr7A 100.000 29 0 0 566 594 258372887 258372859 1.000000e-03 54.7
36 TraesCS6B01G049100 chr5B 96.875 32 1 0 566 597 129353377 129353346 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G049100 chr6B 28941524 28944149 2625 False 4850.000000 4850 100.000000 1 2626 1 chr6B.!!$F1 2625
1 TraesCS6B01G049100 chr6B 28722141 28723980 1839 False 1454.000000 2553 94.113000 683 2615 2 chr6B.!!$F3 1932
2 TraesCS6B01G049100 chr6B 29044524 29045512 988 False 985.000000 985 85.149000 791 1768 1 chr6B.!!$F2 977
3 TraesCS6B01G049100 chr6B 59298805 59300535 1730 False 639.500000 968 90.121000 791 2596 2 chr6B.!!$F4 1805
4 TraesCS6B01G049100 chr6B 28511218 28513734 2516 True 575.666667 1170 86.754000 683 2615 3 chr6B.!!$R1 1932
5 TraesCS6B01G049100 chr3A 66253837 66255129 1292 False 585.333333 1314 92.795667 791 2162 3 chr3A.!!$F1 1371
6 TraesCS6B01G049100 chr6D 16514334 16515836 1502 False 650.500000 1068 83.606000 738 2077 2 chr6D.!!$F1 1339
7 TraesCS6B01G049100 chr6D 16384199 16386772 2573 True 545.666667 1062 84.680000 791 2626 3 chr6D.!!$R2 1835
8 TraesCS6B01G049100 chr6A 16705115 16706133 1018 False 1026.000000 1026 85.548000 791 1776 1 chr6A.!!$F2 985
9 TraesCS6B01G049100 chr6A 16654335 16656003 1668 True 484.666667 1048 86.175333 744 2162 3 chr6A.!!$R1 1418
10 TraesCS6B01G049100 chr7B 210364246 210364866 620 False 647.000000 647 86.196000 1 595 1 chr7B.!!$F1 594
11 TraesCS6B01G049100 chr7B 8999195 8999836 641 True 388.500000 420 88.448000 1 593 2 chr7B.!!$R1 592
12 TraesCS6B01G049100 chrUn 23525789 23526398 609 True 518.000000 518 82.742000 1 593 1 chrUn.!!$R1 592

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
342 344 0.022853 GAAATACGACGCGACGGTTG 59.977 55.0 31.73 8.02 37.61 3.77 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2301 2956 0.026803 GCTTGCAATAGACTTCGCGG 59.973 55.0 6.13 0.0 0.0 6.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
96 97 1.271379 CCTCCAACAACGATTCCCACT 60.271 52.381 0.00 0.00 0.00 4.00
97 98 2.027561 CCTCCAACAACGATTCCCACTA 60.028 50.000 0.00 0.00 0.00 2.74
108 109 1.192146 TTCCCACTAAGCCGCTGACT 61.192 55.000 0.00 0.00 0.00 3.41
258 260 3.402681 ACCGCAGTGCCCTATGCT 61.403 61.111 10.11 0.00 40.34 3.79
262 264 1.526887 GCAGTGCCCTATGCTGGTA 59.473 57.895 2.85 0.00 42.00 3.25
268 270 1.668294 CCCTATGCTGGTAGCCTCG 59.332 63.158 0.00 0.00 41.51 4.63
276 278 4.208686 GGTAGCCTCGCCGGTGAG 62.209 72.222 33.64 33.64 35.70 3.51
280 282 2.978298 TAGCCTCGCCGGTGAGCTAT 62.978 60.000 34.87 24.49 34.56 2.97
285 287 4.530857 GCCGGTGAGCTATGCGGT 62.531 66.667 1.90 0.00 0.00 5.68
286 288 2.586079 CCGGTGAGCTATGCGGTG 60.586 66.667 0.00 0.00 0.00 4.94
287 289 2.586079 CGGTGAGCTATGCGGTGG 60.586 66.667 0.00 0.00 0.00 4.61
288 290 2.897350 GGTGAGCTATGCGGTGGC 60.897 66.667 0.00 0.00 40.52 5.01
289 291 2.897350 GTGAGCTATGCGGTGGCC 60.897 66.667 0.00 0.00 38.85 5.36
290 292 3.083349 TGAGCTATGCGGTGGCCT 61.083 61.111 3.32 0.00 38.85 5.19
291 293 2.590007 GAGCTATGCGGTGGCCTG 60.590 66.667 3.32 0.00 38.85 4.85
292 294 4.864334 AGCTATGCGGTGGCCTGC 62.864 66.667 3.32 6.24 38.85 4.85
294 296 4.838152 CTATGCGGTGGCCTGCGT 62.838 66.667 3.32 9.73 38.85 5.24
295 297 4.830765 TATGCGGTGGCCTGCGTC 62.831 66.667 3.32 0.00 38.85 5.19
304 306 4.090057 GCCTGCGTCGTTGGCTTC 62.090 66.667 18.72 0.00 43.05 3.86
305 307 2.357517 CCTGCGTCGTTGGCTTCT 60.358 61.111 0.00 0.00 0.00 2.85
306 308 1.961277 CCTGCGTCGTTGGCTTCTT 60.961 57.895 0.00 0.00 0.00 2.52
307 309 1.493311 CTGCGTCGTTGGCTTCTTC 59.507 57.895 0.00 0.00 0.00 2.87
308 310 2.215478 CTGCGTCGTTGGCTTCTTCG 62.215 60.000 0.00 0.00 0.00 3.79
309 311 2.470286 CGTCGTTGGCTTCTTCGC 59.530 61.111 0.00 0.00 0.00 4.70
310 312 2.470286 GTCGTTGGCTTCTTCGCG 59.530 61.111 0.00 0.00 0.00 5.87
311 313 2.736995 TCGTTGGCTTCTTCGCGG 60.737 61.111 6.13 0.00 0.00 6.46
312 314 4.445545 CGTTGGCTTCTTCGCGGC 62.446 66.667 6.13 0.00 0.00 6.53
313 315 4.445545 GTTGGCTTCTTCGCGGCG 62.446 66.667 17.70 17.70 0.00 6.46
327 329 4.796495 GGCGGGTGCGGAGGAAAT 62.796 66.667 0.00 0.00 44.10 2.17
328 330 2.188469 GCGGGTGCGGAGGAAATA 59.812 61.111 0.00 0.00 0.00 1.40
329 331 2.178235 GCGGGTGCGGAGGAAATAC 61.178 63.158 0.00 0.00 0.00 1.89
330 332 1.881252 CGGGTGCGGAGGAAATACG 60.881 63.158 0.00 0.00 38.74 3.06
331 333 1.518774 GGGTGCGGAGGAAATACGA 59.481 57.895 0.00 0.00 37.47 3.43
332 334 0.808847 GGGTGCGGAGGAAATACGAC 60.809 60.000 0.00 0.00 37.47 4.34
333 335 1.143969 GGTGCGGAGGAAATACGACG 61.144 60.000 0.00 0.00 37.47 5.12
334 336 1.517694 TGCGGAGGAAATACGACGC 60.518 57.895 0.00 0.00 46.34 5.19
335 337 2.574222 GCGGAGGAAATACGACGCG 61.574 63.158 3.53 3.53 37.47 6.01
336 338 1.063006 CGGAGGAAATACGACGCGA 59.937 57.895 15.93 0.00 37.47 5.87
337 339 1.198608 CGGAGGAAATACGACGCGAC 61.199 60.000 15.93 5.54 37.47 5.19
338 340 1.198608 GGAGGAAATACGACGCGACG 61.199 60.000 27.89 27.89 39.31 5.12
339 341 1.198608 GAGGAAATACGACGCGACGG 61.199 60.000 31.73 15.80 37.61 4.79
340 342 1.514873 GGAAATACGACGCGACGGT 60.515 57.895 31.73 20.16 37.61 4.83
341 343 1.072666 GGAAATACGACGCGACGGTT 61.073 55.000 31.73 22.87 37.61 4.44
342 344 0.022853 GAAATACGACGCGACGGTTG 59.977 55.000 31.73 8.02 37.61 3.77
343 345 1.947934 AAATACGACGCGACGGTTGC 61.948 55.000 31.73 10.41 37.61 4.17
344 346 3.613952 ATACGACGCGACGGTTGCA 62.614 57.895 31.73 13.53 37.61 4.08
347 349 3.764049 GACGCGACGGTTGCAGAC 61.764 66.667 15.93 9.37 0.00 3.51
350 352 3.033764 GCGACGGTTGCAGACGAA 61.034 61.111 15.42 0.00 0.00 3.85
351 353 3.000080 GCGACGGTTGCAGACGAAG 62.000 63.158 15.42 11.46 0.00 3.79
368 370 4.835927 GTGCGGGTCACTGATAGG 57.164 61.111 0.00 0.00 42.38 2.57
369 371 1.898154 GTGCGGGTCACTGATAGGT 59.102 57.895 0.00 0.00 42.38 3.08
370 372 0.460284 GTGCGGGTCACTGATAGGTG 60.460 60.000 0.00 0.00 42.38 4.00
371 373 1.144057 GCGGGTCACTGATAGGTGG 59.856 63.158 0.00 0.00 37.75 4.61
372 374 1.823295 CGGGTCACTGATAGGTGGG 59.177 63.158 0.00 0.00 37.75 4.61
373 375 0.686441 CGGGTCACTGATAGGTGGGA 60.686 60.000 0.00 0.00 37.75 4.37
374 376 0.831307 GGGTCACTGATAGGTGGGAC 59.169 60.000 0.00 0.00 37.75 4.46
375 377 0.831307 GGTCACTGATAGGTGGGACC 59.169 60.000 0.00 0.00 38.99 4.46
376 378 1.568504 GTCACTGATAGGTGGGACCA 58.431 55.000 0.00 0.00 41.95 4.02
377 379 1.482593 GTCACTGATAGGTGGGACCAG 59.517 57.143 0.00 0.00 41.95 4.00
378 380 0.833287 CACTGATAGGTGGGACCAGG 59.167 60.000 0.00 0.00 41.95 4.45
379 381 0.716591 ACTGATAGGTGGGACCAGGA 59.283 55.000 0.00 0.00 41.95 3.86
380 382 1.123928 CTGATAGGTGGGACCAGGAC 58.876 60.000 0.00 0.00 41.95 3.85
381 383 0.415830 TGATAGGTGGGACCAGGACA 59.584 55.000 0.00 0.00 41.95 4.02
382 384 1.123928 GATAGGTGGGACCAGGACAG 58.876 60.000 0.00 0.00 41.95 3.51
383 385 0.716591 ATAGGTGGGACCAGGACAGA 59.283 55.000 0.00 0.00 41.95 3.41
384 386 0.252103 TAGGTGGGACCAGGACAGAC 60.252 60.000 0.00 0.00 41.95 3.51
385 387 1.841556 GGTGGGACCAGGACAGACA 60.842 63.158 0.00 0.00 38.42 3.41
386 388 1.371558 GTGGGACCAGGACAGACAC 59.628 63.158 0.00 0.00 0.00 3.67
387 389 2.207229 TGGGACCAGGACAGACACG 61.207 63.158 0.00 0.00 0.00 4.49
388 390 1.906824 GGGACCAGGACAGACACGA 60.907 63.158 0.00 0.00 0.00 4.35
389 391 1.587054 GGACCAGGACAGACACGAG 59.413 63.158 0.00 0.00 0.00 4.18
390 392 0.894184 GGACCAGGACAGACACGAGA 60.894 60.000 0.00 0.00 0.00 4.04
391 393 0.523966 GACCAGGACAGACACGAGAG 59.476 60.000 0.00 0.00 0.00 3.20
392 394 0.896019 ACCAGGACAGACACGAGAGG 60.896 60.000 0.00 0.00 0.00 3.69
393 395 1.599606 CCAGGACAGACACGAGAGGG 61.600 65.000 0.00 0.00 43.28 4.30
394 396 1.304547 AGGACAGACACGAGAGGGG 60.305 63.158 0.00 0.00 40.46 4.79
395 397 1.304217 GGACAGACACGAGAGGGGA 60.304 63.158 0.00 0.00 40.46 4.81
396 398 1.316706 GGACAGACACGAGAGGGGAG 61.317 65.000 0.00 0.00 40.46 4.30
397 399 1.304547 ACAGACACGAGAGGGGAGG 60.305 63.158 0.00 0.00 40.46 4.30
398 400 1.000771 CAGACACGAGAGGGGAGGA 60.001 63.158 0.00 0.00 40.46 3.71
399 401 1.034838 CAGACACGAGAGGGGAGGAG 61.035 65.000 0.00 0.00 40.46 3.69
400 402 2.363147 ACACGAGAGGGGAGGAGC 60.363 66.667 0.00 0.00 40.46 4.70
401 403 3.522731 CACGAGAGGGGAGGAGCG 61.523 72.222 0.00 0.00 0.00 5.03
402 404 4.824515 ACGAGAGGGGAGGAGCGG 62.825 72.222 0.00 0.00 0.00 5.52
403 405 4.507916 CGAGAGGGGAGGAGCGGA 62.508 72.222 0.00 0.00 0.00 5.54
404 406 2.835895 GAGAGGGGAGGAGCGGAC 60.836 72.222 0.00 0.00 0.00 4.79
405 407 4.824515 AGAGGGGAGGAGCGGACG 62.825 72.222 0.00 0.00 0.00 4.79
406 408 4.816984 GAGGGGAGGAGCGGACGA 62.817 72.222 0.00 0.00 0.00 4.20
407 409 4.824515 AGGGGAGGAGCGGACGAG 62.825 72.222 0.00 0.00 0.00 4.18
411 413 4.816984 GAGGAGCGGACGAGGGGA 62.817 72.222 0.00 0.00 0.00 4.81
412 414 4.824515 AGGAGCGGACGAGGGGAG 62.825 72.222 0.00 0.00 0.00 4.30
414 416 3.827898 GAGCGGACGAGGGGAGTG 61.828 72.222 0.00 0.00 0.00 3.51
427 429 3.421567 GGAGTGCCCAGTTTTGTCT 57.578 52.632 0.00 0.00 34.14 3.41
428 430 0.954452 GGAGTGCCCAGTTTTGTCTG 59.046 55.000 0.00 0.00 35.45 3.51
429 431 1.680338 GAGTGCCCAGTTTTGTCTGT 58.320 50.000 0.00 0.00 34.02 3.41
430 432 1.604278 GAGTGCCCAGTTTTGTCTGTC 59.396 52.381 0.00 0.00 34.02 3.51
431 433 1.064758 AGTGCCCAGTTTTGTCTGTCA 60.065 47.619 0.00 0.00 34.02 3.58
432 434 1.065551 GTGCCCAGTTTTGTCTGTCAC 59.934 52.381 0.00 0.00 33.56 3.67
433 435 0.307760 GCCCAGTTTTGTCTGTCACG 59.692 55.000 0.00 0.00 34.02 4.35
434 436 1.663695 CCCAGTTTTGTCTGTCACGT 58.336 50.000 0.00 0.00 34.02 4.49
435 437 2.828877 CCCAGTTTTGTCTGTCACGTA 58.171 47.619 0.00 0.00 34.02 3.57
436 438 2.542595 CCCAGTTTTGTCTGTCACGTAC 59.457 50.000 0.00 0.00 34.02 3.67
437 439 2.542595 CCAGTTTTGTCTGTCACGTACC 59.457 50.000 0.00 0.00 34.02 3.34
438 440 2.542595 CAGTTTTGTCTGTCACGTACCC 59.457 50.000 0.00 0.00 0.00 3.69
439 441 2.168936 AGTTTTGTCTGTCACGTACCCA 59.831 45.455 0.00 0.00 0.00 4.51
440 442 3.135994 GTTTTGTCTGTCACGTACCCAT 58.864 45.455 0.00 0.00 0.00 4.00
441 443 3.478857 TTTGTCTGTCACGTACCCATT 57.521 42.857 0.00 0.00 0.00 3.16
442 444 3.478857 TTGTCTGTCACGTACCCATTT 57.521 42.857 0.00 0.00 0.00 2.32
443 445 3.478857 TGTCTGTCACGTACCCATTTT 57.521 42.857 0.00 0.00 0.00 1.82
444 446 3.811083 TGTCTGTCACGTACCCATTTTT 58.189 40.909 0.00 0.00 0.00 1.94
445 447 3.562141 TGTCTGTCACGTACCCATTTTTG 59.438 43.478 0.00 0.00 0.00 2.44
446 448 3.562557 GTCTGTCACGTACCCATTTTTGT 59.437 43.478 0.00 0.00 0.00 2.83
447 449 3.810941 TCTGTCACGTACCCATTTTTGTC 59.189 43.478 0.00 0.00 0.00 3.18
448 450 2.879646 TGTCACGTACCCATTTTTGTCC 59.120 45.455 0.00 0.00 0.00 4.02
449 451 2.879646 GTCACGTACCCATTTTTGTCCA 59.120 45.455 0.00 0.00 0.00 4.02
450 452 2.879646 TCACGTACCCATTTTTGTCCAC 59.120 45.455 0.00 0.00 0.00 4.02
451 453 2.882137 CACGTACCCATTTTTGTCCACT 59.118 45.455 0.00 0.00 0.00 4.00
452 454 3.316868 CACGTACCCATTTTTGTCCACTT 59.683 43.478 0.00 0.00 0.00 3.16
453 455 3.955551 ACGTACCCATTTTTGTCCACTTT 59.044 39.130 0.00 0.00 0.00 2.66
454 456 4.403113 ACGTACCCATTTTTGTCCACTTTT 59.597 37.500 0.00 0.00 0.00 2.27
455 457 4.742659 CGTACCCATTTTTGTCCACTTTTG 59.257 41.667 0.00 0.00 0.00 2.44
456 458 3.540617 ACCCATTTTTGTCCACTTTTGC 58.459 40.909 0.00 0.00 0.00 3.68
457 459 2.543430 CCCATTTTTGTCCACTTTTGCG 59.457 45.455 0.00 0.00 0.00 4.85
458 460 2.032979 CCATTTTTGTCCACTTTTGCGC 60.033 45.455 0.00 0.00 0.00 6.09
459 461 1.646189 TTTTTGTCCACTTTTGCGCC 58.354 45.000 4.18 0.00 0.00 6.53
460 462 0.179097 TTTTGTCCACTTTTGCGCCC 60.179 50.000 4.18 0.00 0.00 6.13
461 463 1.323271 TTTGTCCACTTTTGCGCCCA 61.323 50.000 4.18 0.00 0.00 5.36
462 464 1.733402 TTGTCCACTTTTGCGCCCAG 61.733 55.000 4.18 0.00 0.00 4.45
463 465 2.193536 GTCCACTTTTGCGCCCAGT 61.194 57.895 4.18 0.28 0.00 4.00
464 466 1.454847 TCCACTTTTGCGCCCAGTT 60.455 52.632 4.18 0.00 0.00 3.16
465 467 1.040339 TCCACTTTTGCGCCCAGTTT 61.040 50.000 4.18 0.00 0.00 2.66
466 468 0.875474 CCACTTTTGCGCCCAGTTTG 60.875 55.000 4.18 0.00 0.00 2.93
467 469 0.875474 CACTTTTGCGCCCAGTTTGG 60.875 55.000 4.18 0.00 37.25 3.28
476 478 4.397348 CCAGTTTGGGTCGGGAAG 57.603 61.111 0.00 0.00 32.67 3.46
477 479 1.758592 CCAGTTTGGGTCGGGAAGA 59.241 57.895 0.00 0.00 32.67 2.87
478 480 0.109723 CCAGTTTGGGTCGGGAAGAA 59.890 55.000 0.00 0.00 32.67 2.52
479 481 1.235724 CAGTTTGGGTCGGGAAGAAC 58.764 55.000 0.00 0.00 35.29 3.01
480 482 0.841289 AGTTTGGGTCGGGAAGAACA 59.159 50.000 0.00 0.00 38.65 3.18
481 483 0.949397 GTTTGGGTCGGGAAGAACAC 59.051 55.000 0.00 0.00 38.65 3.32
482 484 0.841289 TTTGGGTCGGGAAGAACACT 59.159 50.000 0.00 0.00 38.65 3.55
483 485 1.719529 TTGGGTCGGGAAGAACACTA 58.280 50.000 0.00 0.00 38.65 2.74
484 486 0.971386 TGGGTCGGGAAGAACACTAC 59.029 55.000 0.00 0.00 38.65 2.73
485 487 0.971386 GGGTCGGGAAGAACACTACA 59.029 55.000 0.00 0.00 38.65 2.74
486 488 1.337541 GGGTCGGGAAGAACACTACAC 60.338 57.143 0.00 0.00 38.65 2.90
487 489 1.668047 GGTCGGGAAGAACACTACACG 60.668 57.143 0.00 0.00 36.33 4.49
488 490 0.599558 TCGGGAAGAACACTACACGG 59.400 55.000 0.00 0.00 0.00 4.94
489 491 0.599558 CGGGAAGAACACTACACGGA 59.400 55.000 0.00 0.00 0.00 4.69
490 492 1.668047 CGGGAAGAACACTACACGGAC 60.668 57.143 0.00 0.00 0.00 4.79
491 493 1.342174 GGGAAGAACACTACACGGACA 59.658 52.381 0.00 0.00 0.00 4.02
492 494 2.609737 GGGAAGAACACTACACGGACAG 60.610 54.545 0.00 0.00 0.00 3.51
493 495 2.035576 GGAAGAACACTACACGGACAGT 59.964 50.000 0.00 0.00 0.00 3.55
494 496 3.254166 GGAAGAACACTACACGGACAGTA 59.746 47.826 0.00 0.00 0.00 2.74
495 497 4.474113 GAAGAACACTACACGGACAGTAG 58.526 47.826 0.00 0.00 43.51 2.57
496 498 2.818432 AGAACACTACACGGACAGTAGG 59.182 50.000 0.00 0.00 42.47 3.18
497 499 0.886563 ACACTACACGGACAGTAGGC 59.113 55.000 0.00 0.00 42.47 3.93
498 500 0.179171 CACTACACGGACAGTAGGCG 60.179 60.000 0.00 0.00 42.47 5.52
499 501 1.310933 ACTACACGGACAGTAGGCGG 61.311 60.000 0.00 0.00 42.47 6.13
500 502 1.002257 TACACGGACAGTAGGCGGA 60.002 57.895 0.00 0.00 0.00 5.54
501 503 1.308069 TACACGGACAGTAGGCGGAC 61.308 60.000 0.00 0.00 0.00 4.79
502 504 2.282674 ACGGACAGTAGGCGGACA 60.283 61.111 0.00 0.00 0.00 4.02
503 505 2.181021 CGGACAGTAGGCGGACAC 59.819 66.667 0.00 0.00 0.00 3.67
504 506 2.577593 GGACAGTAGGCGGACACC 59.422 66.667 0.00 0.00 0.00 4.16
505 507 2.577593 GACAGTAGGCGGACACCC 59.422 66.667 0.00 0.00 0.00 4.61
515 517 2.359478 GGACACCCGCATCCGTTT 60.359 61.111 0.00 0.00 0.00 3.60
516 518 1.078988 GGACACCCGCATCCGTTTA 60.079 57.895 0.00 0.00 0.00 2.01
517 519 1.087771 GGACACCCGCATCCGTTTAG 61.088 60.000 0.00 0.00 0.00 1.85
518 520 1.078708 ACACCCGCATCCGTTTAGG 60.079 57.895 0.00 0.00 42.97 2.69
519 521 1.078708 CACCCGCATCCGTTTAGGT 60.079 57.895 0.00 0.00 41.99 3.08
520 522 1.087771 CACCCGCATCCGTTTAGGTC 61.088 60.000 0.00 0.00 41.99 3.85
521 523 1.881252 CCCGCATCCGTTTAGGTCG 60.881 63.158 0.00 0.00 41.99 4.79
522 524 2.522638 CCGCATCCGTTTAGGTCGC 61.523 63.158 0.00 0.00 41.99 5.19
523 525 2.522638 CGCATCCGTTTAGGTCGCC 61.523 63.158 0.00 0.00 41.99 5.54
524 526 2.178235 GCATCCGTTTAGGTCGCCC 61.178 63.158 0.00 0.00 41.99 6.13
525 527 1.523032 CATCCGTTTAGGTCGCCCC 60.523 63.158 0.00 0.00 41.99 5.80
526 528 3.085119 ATCCGTTTAGGTCGCCCCG 62.085 63.158 0.00 0.00 41.99 5.73
527 529 4.073200 CCGTTTAGGTCGCCCCGT 62.073 66.667 0.00 0.00 38.74 5.28
528 530 2.047939 CGTTTAGGTCGCCCCGTT 60.048 61.111 0.00 0.00 38.74 4.44
529 531 2.385091 CGTTTAGGTCGCCCCGTTG 61.385 63.158 0.00 0.00 38.74 4.10
530 532 2.036571 GTTTAGGTCGCCCCGTTGG 61.037 63.158 0.00 0.00 38.74 3.77
543 545 2.626840 CCCGTTGGGCCAAATTTTATG 58.373 47.619 22.82 2.85 35.35 1.90
544 546 2.027653 CCCGTTGGGCCAAATTTTATGT 60.028 45.455 22.82 0.00 35.35 2.29
545 547 3.258228 CCGTTGGGCCAAATTTTATGTC 58.742 45.455 22.82 3.96 0.00 3.06
546 548 3.056179 CCGTTGGGCCAAATTTTATGTCT 60.056 43.478 22.82 0.00 0.00 3.41
547 549 3.925913 CGTTGGGCCAAATTTTATGTCTG 59.074 43.478 22.82 0.00 0.00 3.51
548 550 4.321601 CGTTGGGCCAAATTTTATGTCTGA 60.322 41.667 22.82 0.00 0.00 3.27
549 551 5.546526 GTTGGGCCAAATTTTATGTCTGAA 58.453 37.500 22.82 0.00 0.00 3.02
550 552 6.172630 GTTGGGCCAAATTTTATGTCTGAAT 58.827 36.000 22.82 0.00 0.00 2.57
551 553 5.732633 TGGGCCAAATTTTATGTCTGAATG 58.267 37.500 2.13 0.00 0.00 2.67
552 554 5.483231 TGGGCCAAATTTTATGTCTGAATGA 59.517 36.000 2.13 0.00 0.00 2.57
553 555 5.812127 GGGCCAAATTTTATGTCTGAATGAC 59.188 40.000 4.39 0.00 45.54 3.06
554 556 5.812127 GGCCAAATTTTATGTCTGAATGACC 59.188 40.000 0.00 0.00 44.75 4.02
555 557 5.812127 GCCAAATTTTATGTCTGAATGACCC 59.188 40.000 0.00 0.00 44.75 4.46
556 558 6.574073 GCCAAATTTTATGTCTGAATGACCCA 60.574 38.462 0.00 0.00 44.75 4.51
557 559 7.385267 CCAAATTTTATGTCTGAATGACCCAA 58.615 34.615 0.00 0.00 44.75 4.12
558 560 7.877097 CCAAATTTTATGTCTGAATGACCCAAA 59.123 33.333 0.00 0.00 44.75 3.28
559 561 8.711457 CAAATTTTATGTCTGAATGACCCAAAC 58.289 33.333 0.00 0.00 44.75 2.93
560 562 5.621197 TTTATGTCTGAATGACCCAAACG 57.379 39.130 0.00 0.00 44.75 3.60
561 563 2.920724 TGTCTGAATGACCCAAACGA 57.079 45.000 0.00 0.00 44.75 3.85
562 564 3.201353 TGTCTGAATGACCCAAACGAA 57.799 42.857 0.00 0.00 44.75 3.85
563 565 3.750371 TGTCTGAATGACCCAAACGAAT 58.250 40.909 0.00 0.00 44.75 3.34
564 566 4.900684 TGTCTGAATGACCCAAACGAATA 58.099 39.130 0.00 0.00 44.75 1.75
565 567 5.309638 TGTCTGAATGACCCAAACGAATAA 58.690 37.500 0.00 0.00 44.75 1.40
566 568 5.765677 TGTCTGAATGACCCAAACGAATAAA 59.234 36.000 0.00 0.00 44.75 1.40
567 569 6.263392 TGTCTGAATGACCCAAACGAATAAAA 59.737 34.615 0.00 0.00 44.75 1.52
568 570 7.040062 TGTCTGAATGACCCAAACGAATAAAAT 60.040 33.333 0.00 0.00 44.75 1.82
569 571 7.273381 GTCTGAATGACCCAAACGAATAAAATG 59.727 37.037 0.00 0.00 39.69 2.32
570 572 6.393990 TGAATGACCCAAACGAATAAAATGG 58.606 36.000 0.00 0.00 0.00 3.16
574 576 3.765026 CCCAAACGAATAAAATGGGTCG 58.235 45.455 0.90 0.00 44.67 4.79
575 577 3.175929 CCAAACGAATAAAATGGGTCGC 58.824 45.455 0.00 0.00 36.99 5.19
576 578 3.175929 CAAACGAATAAAATGGGTCGCC 58.824 45.455 0.00 0.00 36.99 5.54
577 579 1.385528 ACGAATAAAATGGGTCGCCC 58.614 50.000 7.87 7.87 45.71 6.13
586 588 4.324991 GGGTCGCCCCGTTGAAGT 62.325 66.667 3.73 0.00 42.41 3.01
587 589 2.281276 GGTCGCCCCGTTGAAGTT 60.281 61.111 0.00 0.00 0.00 2.66
588 590 2.613506 GGTCGCCCCGTTGAAGTTG 61.614 63.158 0.00 0.00 0.00 3.16
589 591 2.975799 TCGCCCCGTTGAAGTTGC 60.976 61.111 0.00 0.00 0.00 4.17
590 592 2.978010 CGCCCCGTTGAAGTTGCT 60.978 61.111 0.00 0.00 0.00 3.91
591 593 2.954611 GCCCCGTTGAAGTTGCTC 59.045 61.111 0.00 0.00 0.00 4.26
592 594 1.600916 GCCCCGTTGAAGTTGCTCT 60.601 57.895 0.00 0.00 0.00 4.09
593 595 0.321298 GCCCCGTTGAAGTTGCTCTA 60.321 55.000 0.00 0.00 0.00 2.43
594 596 1.880646 GCCCCGTTGAAGTTGCTCTAA 60.881 52.381 0.00 0.00 0.00 2.10
595 597 1.804748 CCCCGTTGAAGTTGCTCTAAC 59.195 52.381 0.00 0.00 39.65 2.34
609 611 7.994851 GTTGCTCTAACTAAACAGATTTTCG 57.005 36.000 0.00 0.00 36.34 3.46
610 612 6.165659 TGCTCTAACTAAACAGATTTTCGC 57.834 37.500 0.00 0.00 0.00 4.70
611 613 5.699001 TGCTCTAACTAAACAGATTTTCGCA 59.301 36.000 0.00 0.00 0.00 5.10
612 614 6.016111 GCTCTAACTAAACAGATTTTCGCAC 58.984 40.000 0.00 0.00 0.00 5.34
613 615 6.148270 TCTAACTAAACAGATTTTCGCACG 57.852 37.500 0.00 0.00 0.00 5.34
614 616 4.806342 AACTAAACAGATTTTCGCACGT 57.194 36.364 0.00 0.00 0.00 4.49
615 617 4.385244 ACTAAACAGATTTTCGCACGTC 57.615 40.909 0.00 0.00 0.00 4.34
616 618 4.056050 ACTAAACAGATTTTCGCACGTCT 58.944 39.130 0.00 0.00 0.00 4.18
617 619 3.963383 AAACAGATTTTCGCACGTCTT 57.037 38.095 0.00 0.00 0.00 3.01
618 620 3.521524 AACAGATTTTCGCACGTCTTC 57.478 42.857 0.00 0.00 0.00 2.87
619 621 2.755650 ACAGATTTTCGCACGTCTTCT 58.244 42.857 0.00 0.00 0.00 2.85
620 622 2.731976 ACAGATTTTCGCACGTCTTCTC 59.268 45.455 0.00 0.00 0.00 2.87
621 623 2.989840 CAGATTTTCGCACGTCTTCTCT 59.010 45.455 0.00 0.00 0.00 3.10
622 624 3.060098 CAGATTTTCGCACGTCTTCTCTC 59.940 47.826 0.00 0.00 0.00 3.20
623 625 1.405461 TTTTCGCACGTCTTCTCTCG 58.595 50.000 0.00 0.00 0.00 4.04
624 626 0.589708 TTTCGCACGTCTTCTCTCGA 59.410 50.000 0.00 0.00 0.00 4.04
625 627 0.803117 TTCGCACGTCTTCTCTCGAT 59.197 50.000 0.00 0.00 0.00 3.59
626 628 1.648504 TCGCACGTCTTCTCTCGATA 58.351 50.000 0.00 0.00 0.00 2.92
627 629 2.004733 TCGCACGTCTTCTCTCGATAA 58.995 47.619 0.00 0.00 0.00 1.75
628 630 2.417586 TCGCACGTCTTCTCTCGATAAA 59.582 45.455 0.00 0.00 0.00 1.40
629 631 2.778928 CGCACGTCTTCTCTCGATAAAG 59.221 50.000 0.00 0.00 0.00 1.85
630 632 3.728268 CGCACGTCTTCTCTCGATAAAGT 60.728 47.826 0.00 0.00 0.00 2.66
631 633 3.544285 GCACGTCTTCTCTCGATAAAGTG 59.456 47.826 0.00 0.00 0.00 3.16
632 634 4.672024 GCACGTCTTCTCTCGATAAAGTGA 60.672 45.833 0.00 0.00 0.00 3.41
633 635 5.025190 CACGTCTTCTCTCGATAAAGTGAG 58.975 45.833 0.00 0.00 34.20 3.51
634 636 4.032355 CGTCTTCTCTCGATAAAGTGAGC 58.968 47.826 0.00 0.00 33.27 4.26
635 637 4.032355 GTCTTCTCTCGATAAAGTGAGCG 58.968 47.826 0.00 0.00 33.27 5.03
636 638 3.065510 TCTTCTCTCGATAAAGTGAGCGG 59.934 47.826 0.00 0.00 33.27 5.52
637 639 1.065701 TCTCTCGATAAAGTGAGCGGC 59.934 52.381 0.00 0.00 33.27 6.53
638 640 0.102481 TCTCGATAAAGTGAGCGGCC 59.898 55.000 0.00 0.00 32.20 6.13
639 641 0.876342 CTCGATAAAGTGAGCGGCCC 60.876 60.000 0.00 0.00 0.00 5.80
640 642 1.144057 CGATAAAGTGAGCGGCCCT 59.856 57.895 0.00 0.00 0.00 5.19
641 643 0.876342 CGATAAAGTGAGCGGCCCTC 60.876 60.000 12.83 12.83 41.15 4.30
642 644 0.533085 GATAAAGTGAGCGGCCCTCC 60.533 60.000 15.98 9.18 39.98 4.30
654 656 3.854669 CCCTCCGGCGCATCTTCT 61.855 66.667 10.83 0.00 0.00 2.85
655 657 2.187946 CCTCCGGCGCATCTTCTT 59.812 61.111 10.83 0.00 0.00 2.52
656 658 2.176273 CCTCCGGCGCATCTTCTTG 61.176 63.158 10.83 0.00 0.00 3.02
657 659 1.448540 CTCCGGCGCATCTTCTTGT 60.449 57.895 10.83 0.00 0.00 3.16
658 660 1.003839 TCCGGCGCATCTTCTTGTT 60.004 52.632 10.83 0.00 0.00 2.83
659 661 0.605319 TCCGGCGCATCTTCTTGTTT 60.605 50.000 10.83 0.00 0.00 2.83
660 662 0.240945 CCGGCGCATCTTCTTGTTTT 59.759 50.000 10.83 0.00 0.00 2.43
661 663 1.330306 CGGCGCATCTTCTTGTTTTG 58.670 50.000 10.83 0.00 0.00 2.44
662 664 1.069296 CGGCGCATCTTCTTGTTTTGA 60.069 47.619 10.83 0.00 0.00 2.69
663 665 2.589014 GGCGCATCTTCTTGTTTTGAG 58.411 47.619 10.83 0.00 0.00 3.02
664 666 1.981533 GCGCATCTTCTTGTTTTGAGC 59.018 47.619 0.30 0.00 0.00 4.26
665 667 2.605338 GCGCATCTTCTTGTTTTGAGCA 60.605 45.455 0.30 0.00 33.98 4.26
666 668 3.829948 CGCATCTTCTTGTTTTGAGCAT 58.170 40.909 0.00 0.00 0.00 3.79
667 669 3.850273 CGCATCTTCTTGTTTTGAGCATC 59.150 43.478 0.00 0.00 0.00 3.91
668 670 4.379186 CGCATCTTCTTGTTTTGAGCATCT 60.379 41.667 0.00 0.00 34.92 2.90
669 671 5.467705 GCATCTTCTTGTTTTGAGCATCTT 58.532 37.500 0.00 0.00 34.92 2.40
670 672 5.924825 GCATCTTCTTGTTTTGAGCATCTTT 59.075 36.000 0.00 0.00 34.92 2.52
671 673 6.423001 GCATCTTCTTGTTTTGAGCATCTTTT 59.577 34.615 0.00 0.00 34.92 2.27
672 674 7.359014 GCATCTTCTTGTTTTGAGCATCTTTTC 60.359 37.037 0.00 0.00 34.92 2.29
673 675 7.099266 TCTTCTTGTTTTGAGCATCTTTTCA 57.901 32.000 0.00 0.00 34.92 2.69
674 676 7.719483 TCTTCTTGTTTTGAGCATCTTTTCAT 58.281 30.769 0.00 0.00 34.92 2.57
675 677 7.650504 TCTTCTTGTTTTGAGCATCTTTTCATG 59.349 33.333 0.00 0.00 34.92 3.07
710 712 3.766691 ATGGCCGGAGCGTACGTT 61.767 61.111 17.90 11.48 41.24 3.99
719 721 1.119015 GAGCGTACGTTCGACGAGTG 61.119 60.000 19.16 0.00 46.05 3.51
721 723 1.439201 CGTACGTTCGACGAGTGCA 60.439 57.895 9.11 0.00 46.05 4.57
722 724 0.791983 CGTACGTTCGACGAGTGCAT 60.792 55.000 9.11 0.00 46.05 3.96
729 731 1.517257 CGACGAGTGCATGGGAGTC 60.517 63.158 0.00 0.00 0.00 3.36
730 732 1.153549 GACGAGTGCATGGGAGTCC 60.154 63.158 0.00 0.00 0.00 3.85
771 777 4.400961 GCAGCTCCAGCGGGAAGT 62.401 66.667 7.12 0.00 44.38 3.01
772 778 2.125350 CAGCTCCAGCGGGAAGTC 60.125 66.667 7.12 0.00 44.38 3.01
773 779 3.764466 AGCTCCAGCGGGAAGTCG 61.764 66.667 7.12 0.00 44.38 4.18
774 780 4.070552 GCTCCAGCGGGAAGTCGT 62.071 66.667 7.12 0.00 44.38 4.34
775 781 2.182030 CTCCAGCGGGAAGTCGTC 59.818 66.667 7.12 0.00 44.38 4.20
776 782 2.282958 TCCAGCGGGAAGTCGTCT 60.283 61.111 1.89 0.00 41.32 4.18
777 783 1.001764 TCCAGCGGGAAGTCGTCTA 60.002 57.895 1.89 0.00 41.32 2.59
778 784 1.139095 CCAGCGGGAAGTCGTCTAC 59.861 63.158 0.00 0.00 35.59 2.59
779 785 1.139095 CAGCGGGAAGTCGTCTACC 59.861 63.158 0.00 0.00 0.00 3.18
780 786 1.001145 AGCGGGAAGTCGTCTACCT 60.001 57.895 0.00 0.00 0.00 3.08
781 787 1.139095 GCGGGAAGTCGTCTACCTG 59.861 63.158 0.00 0.00 0.00 4.00
782 788 1.139095 CGGGAAGTCGTCTACCTGC 59.861 63.158 0.00 0.00 0.00 4.85
783 789 1.516423 GGGAAGTCGTCTACCTGCC 59.484 63.158 0.00 0.00 0.00 4.85
784 790 1.139095 GGAAGTCGTCTACCTGCCG 59.861 63.158 0.00 0.00 0.00 5.69
787 793 4.509737 GTCGTCTACCTGCCGCCC 62.510 72.222 0.00 0.00 0.00 6.13
807 813 2.104132 CCACGTCATCGATCCGCA 59.896 61.111 12.56 0.00 40.62 5.69
844 850 0.107508 CGTCCATCCCAAGCATCACT 60.108 55.000 0.00 0.00 0.00 3.41
899 905 1.153289 CACCATCCTCTCCGCCAAG 60.153 63.158 0.00 0.00 0.00 3.61
900 906 2.370445 ACCATCCTCTCCGCCAAGG 61.370 63.158 0.00 0.00 42.97 3.61
901 907 2.203126 CATCCTCTCCGCCAAGGC 60.203 66.667 0.00 0.00 40.77 4.35
912 918 2.990967 CCAAGGCGCCAACCACAT 60.991 61.111 31.54 1.71 0.00 3.21
1230 1432 6.365970 ACAAGATCTACATCTTCAAGGTGT 57.634 37.500 8.73 8.73 44.86 4.16
1476 1741 3.544698 AGTTCACCTCCTCCTAGACAA 57.455 47.619 0.00 0.00 0.00 3.18
1478 1743 3.166679 GTTCACCTCCTCCTAGACAACT 58.833 50.000 0.00 0.00 0.00 3.16
1845 2442 1.537202 CAGCTTGCCAACTAGTGTTCC 59.463 52.381 0.00 0.00 33.52 3.62
1876 2473 8.843885 TCAGAATGCATTAGATTCAGATTAGG 57.156 34.615 12.97 0.00 34.76 2.69
1940 2543 8.095452 AGAGATAAATTAGATGTGGTTCACCT 57.905 34.615 0.00 0.00 36.82 4.00
2121 2775 4.323417 AGGTAATTTGTGATCACGAAGCA 58.677 39.130 27.96 17.71 38.04 3.91
2297 2952 1.453745 GCCAGGGATCATTTGCCGA 60.454 57.895 0.00 0.00 41.66 5.54
2300 2955 1.683011 CCAGGGATCATTTGCCGACTT 60.683 52.381 0.00 0.00 41.66 3.01
2301 2956 1.672881 CAGGGATCATTTGCCGACTTC 59.327 52.381 0.00 0.00 41.66 3.01
2302 2957 1.025041 GGGATCATTTGCCGACTTCC 58.975 55.000 0.00 0.00 0.00 3.46
2303 2958 0.657840 GGATCATTTGCCGACTTCCG 59.342 55.000 0.00 0.00 38.18 4.30
2307 2962 1.669760 ATTTGCCGACTTCCGCGAA 60.670 52.632 8.23 0.00 36.84 4.70
2308 2963 1.635663 ATTTGCCGACTTCCGCGAAG 61.636 55.000 8.23 12.21 44.37 3.79
2318 2973 1.999735 CTTCCGCGAAGTCTATTGCAA 59.000 47.619 8.23 0.00 35.21 4.08
2319 2974 1.640428 TCCGCGAAGTCTATTGCAAG 58.360 50.000 8.23 0.00 0.00 4.01
2320 2975 0.026803 CCGCGAAGTCTATTGCAAGC 59.973 55.000 8.23 0.00 0.00 4.01
2321 2976 1.002366 CGCGAAGTCTATTGCAAGCT 58.998 50.000 0.00 0.00 0.00 3.74
2322 2977 1.267235 CGCGAAGTCTATTGCAAGCTG 60.267 52.381 0.00 0.00 0.00 4.24
2323 2978 1.530646 GCGAAGTCTATTGCAAGCTGC 60.531 52.381 4.94 0.00 45.29 5.25
2324 2979 2.005451 CGAAGTCTATTGCAAGCTGCT 58.995 47.619 4.94 0.00 45.31 4.24
2326 2981 3.120060 CGAAGTCTATTGCAAGCTGCTTT 60.120 43.478 13.10 0.37 45.31 3.51
2329 2984 4.802999 AGTCTATTGCAAGCTGCTTTTTC 58.197 39.130 13.10 5.69 45.31 2.29
2330 2985 4.279169 AGTCTATTGCAAGCTGCTTTTTCA 59.721 37.500 13.10 8.29 45.31 2.69
2331 2986 4.620184 GTCTATTGCAAGCTGCTTTTTCAG 59.380 41.667 13.10 6.78 45.31 3.02
2615 3873 2.308570 ACAAAGGCTCCATGGACATGTA 59.691 45.455 11.44 0.00 37.11 2.29
2618 3876 3.786656 GCTCCATGGACATGTAGCA 57.213 52.632 20.52 0.00 46.17 3.49
2623 3881 4.142093 GCTCCATGGACATGTAGCAAAAAT 60.142 41.667 20.52 0.00 46.17 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 0.671796 TCGTCTTCGTCAAAGGAGCA 59.328 50.000 0.00 0.00 35.54 4.26
68 69 3.172106 TTGTTGGAGGCGTCCCCA 61.172 61.111 22.25 15.60 43.15 4.96
71 72 0.953960 AATCGTTGTTGGAGGCGTCC 60.954 55.000 18.69 18.69 44.24 4.79
96 97 0.389391 GCATCCTAGTCAGCGGCTTA 59.611 55.000 0.00 0.00 0.00 3.09
97 98 1.144936 GCATCCTAGTCAGCGGCTT 59.855 57.895 0.00 0.00 0.00 4.35
268 270 4.530857 ACCGCATAGCTCACCGGC 62.531 66.667 16.02 2.58 44.29 6.13
288 290 1.901650 GAAGAAGCCAACGACGCAGG 61.902 60.000 0.00 0.00 0.00 4.85
289 291 1.493311 GAAGAAGCCAACGACGCAG 59.507 57.895 0.00 0.00 0.00 5.18
290 292 2.307309 CGAAGAAGCCAACGACGCA 61.307 57.895 0.00 0.00 0.00 5.24
291 293 2.470286 CGAAGAAGCCAACGACGC 59.530 61.111 0.00 0.00 0.00 5.19
292 294 2.470286 GCGAAGAAGCCAACGACG 59.530 61.111 0.00 0.00 0.00 5.12
293 295 2.470286 CGCGAAGAAGCCAACGAC 59.530 61.111 0.00 0.00 0.00 4.34
294 296 2.736995 CCGCGAAGAAGCCAACGA 60.737 61.111 8.23 0.00 0.00 3.85
295 297 4.445545 GCCGCGAAGAAGCCAACG 62.446 66.667 8.23 0.00 0.00 4.10
296 298 4.445545 CGCCGCGAAGAAGCCAAC 62.446 66.667 8.23 0.00 0.00 3.77
310 312 3.394635 TATTTCCTCCGCACCCGCC 62.395 63.158 0.00 0.00 33.11 6.13
311 313 2.178235 GTATTTCCTCCGCACCCGC 61.178 63.158 0.00 0.00 0.00 6.13
312 314 1.881252 CGTATTTCCTCCGCACCCG 60.881 63.158 0.00 0.00 0.00 5.28
313 315 0.808847 GTCGTATTTCCTCCGCACCC 60.809 60.000 0.00 0.00 0.00 4.61
314 316 1.143969 CGTCGTATTTCCTCCGCACC 61.144 60.000 0.00 0.00 0.00 5.01
315 317 1.749609 GCGTCGTATTTCCTCCGCAC 61.750 60.000 0.00 0.00 40.72 5.34
316 318 1.517694 GCGTCGTATTTCCTCCGCA 60.518 57.895 0.00 0.00 40.72 5.69
317 319 2.574222 CGCGTCGTATTTCCTCCGC 61.574 63.158 0.00 0.00 37.91 5.54
318 320 1.063006 TCGCGTCGTATTTCCTCCG 59.937 57.895 5.77 0.00 0.00 4.63
319 321 1.198608 CGTCGCGTCGTATTTCCTCC 61.199 60.000 17.43 0.00 0.00 4.30
320 322 1.198608 CCGTCGCGTCGTATTTCCTC 61.199 60.000 23.01 0.00 0.00 3.71
321 323 1.226491 CCGTCGCGTCGTATTTCCT 60.226 57.895 23.01 0.00 0.00 3.36
322 324 1.072666 AACCGTCGCGTCGTATTTCC 61.073 55.000 23.01 0.00 0.00 3.13
323 325 0.022853 CAACCGTCGCGTCGTATTTC 59.977 55.000 23.01 0.00 0.00 2.17
324 326 1.947934 GCAACCGTCGCGTCGTATTT 61.948 55.000 23.01 11.04 0.00 1.40
325 327 2.438954 GCAACCGTCGCGTCGTATT 61.439 57.895 23.01 14.43 0.00 1.89
326 328 2.877582 GCAACCGTCGCGTCGTAT 60.878 61.111 23.01 9.25 0.00 3.06
327 329 4.325304 TGCAACCGTCGCGTCGTA 62.325 61.111 23.01 2.92 0.00 3.43
330 332 3.764049 GTCTGCAACCGTCGCGTC 61.764 66.667 5.77 0.00 0.00 5.19
333 335 3.000080 CTTCGTCTGCAACCGTCGC 62.000 63.158 4.79 0.00 0.00 5.19
334 336 1.660575 ACTTCGTCTGCAACCGTCG 60.661 57.895 4.79 0.00 0.00 5.12
335 337 1.853319 CACTTCGTCTGCAACCGTC 59.147 57.895 4.79 0.00 0.00 4.79
336 338 2.244651 GCACTTCGTCTGCAACCGT 61.245 57.895 4.79 0.00 34.56 4.83
337 339 2.551270 GCACTTCGTCTGCAACCG 59.449 61.111 0.00 0.00 34.56 4.44
338 340 2.551270 CGCACTTCGTCTGCAACC 59.449 61.111 0.00 0.00 34.00 3.77
339 341 2.551270 CCGCACTTCGTCTGCAAC 59.449 61.111 0.00 0.00 34.00 4.17
340 342 2.664851 CCCGCACTTCGTCTGCAA 60.665 61.111 0.00 0.00 34.00 4.08
341 343 3.858868 GACCCGCACTTCGTCTGCA 62.859 63.158 0.00 0.00 34.00 4.41
342 344 3.112709 GACCCGCACTTCGTCTGC 61.113 66.667 0.00 0.00 36.19 4.26
343 345 2.022129 GTGACCCGCACTTCGTCTG 61.022 63.158 0.00 0.00 44.27 3.51
344 346 2.338984 GTGACCCGCACTTCGTCT 59.661 61.111 0.00 0.00 44.27 4.18
352 354 1.613317 CCACCTATCAGTGACCCGCA 61.613 60.000 0.00 0.00 40.34 5.69
353 355 1.144057 CCACCTATCAGTGACCCGC 59.856 63.158 0.00 0.00 40.34 6.13
354 356 0.686441 TCCCACCTATCAGTGACCCG 60.686 60.000 0.00 0.00 40.34 5.28
355 357 0.831307 GTCCCACCTATCAGTGACCC 59.169 60.000 0.00 0.00 40.34 4.46
356 358 0.831307 GGTCCCACCTATCAGTGACC 59.169 60.000 0.00 0.00 40.34 4.02
357 359 1.482593 CTGGTCCCACCTATCAGTGAC 59.517 57.143 0.00 0.00 40.34 3.67
358 360 1.622449 CCTGGTCCCACCTATCAGTGA 60.622 57.143 0.00 0.00 40.34 3.41
359 361 0.833287 CCTGGTCCCACCTATCAGTG 59.167 60.000 0.00 0.00 39.58 3.66
360 362 0.716591 TCCTGGTCCCACCTATCAGT 59.283 55.000 0.00 0.00 39.58 3.41
361 363 1.123928 GTCCTGGTCCCACCTATCAG 58.876 60.000 0.00 0.00 39.58 2.90
362 364 0.415830 TGTCCTGGTCCCACCTATCA 59.584 55.000 0.00 0.00 39.58 2.15
363 365 1.123928 CTGTCCTGGTCCCACCTATC 58.876 60.000 0.00 0.00 39.58 2.08
364 366 0.716591 TCTGTCCTGGTCCCACCTAT 59.283 55.000 0.00 0.00 39.58 2.57
365 367 0.252103 GTCTGTCCTGGTCCCACCTA 60.252 60.000 0.00 0.00 39.58 3.08
366 368 1.536662 GTCTGTCCTGGTCCCACCT 60.537 63.158 0.00 0.00 39.58 4.00
367 369 1.841556 TGTCTGTCCTGGTCCCACC 60.842 63.158 0.00 0.00 39.22 4.61
368 370 1.371558 GTGTCTGTCCTGGTCCCAC 59.628 63.158 0.00 0.00 0.00 4.61
369 371 2.207229 CGTGTCTGTCCTGGTCCCA 61.207 63.158 0.00 0.00 0.00 4.37
370 372 1.878656 CTCGTGTCTGTCCTGGTCCC 61.879 65.000 0.00 0.00 0.00 4.46
371 373 0.894184 TCTCGTGTCTGTCCTGGTCC 60.894 60.000 0.00 0.00 0.00 4.46
372 374 0.523966 CTCTCGTGTCTGTCCTGGTC 59.476 60.000 0.00 0.00 0.00 4.02
373 375 0.896019 CCTCTCGTGTCTGTCCTGGT 60.896 60.000 0.00 0.00 0.00 4.00
374 376 1.599606 CCCTCTCGTGTCTGTCCTGG 61.600 65.000 0.00 0.00 0.00 4.45
375 377 1.599606 CCCCTCTCGTGTCTGTCCTG 61.600 65.000 0.00 0.00 0.00 3.86
376 378 1.304547 CCCCTCTCGTGTCTGTCCT 60.305 63.158 0.00 0.00 0.00 3.85
377 379 1.304217 TCCCCTCTCGTGTCTGTCC 60.304 63.158 0.00 0.00 0.00 4.02
378 380 1.316706 CCTCCCCTCTCGTGTCTGTC 61.317 65.000 0.00 0.00 0.00 3.51
379 381 1.304547 CCTCCCCTCTCGTGTCTGT 60.305 63.158 0.00 0.00 0.00 3.41
380 382 1.000771 TCCTCCCCTCTCGTGTCTG 60.001 63.158 0.00 0.00 0.00 3.51
381 383 1.304952 CTCCTCCCCTCTCGTGTCT 59.695 63.158 0.00 0.00 0.00 3.41
382 384 2.419739 GCTCCTCCCCTCTCGTGTC 61.420 68.421 0.00 0.00 0.00 3.67
383 385 2.363147 GCTCCTCCCCTCTCGTGT 60.363 66.667 0.00 0.00 0.00 4.49
384 386 3.522731 CGCTCCTCCCCTCTCGTG 61.523 72.222 0.00 0.00 0.00 4.35
385 387 4.824515 CCGCTCCTCCCCTCTCGT 62.825 72.222 0.00 0.00 0.00 4.18
386 388 4.507916 TCCGCTCCTCCCCTCTCG 62.508 72.222 0.00 0.00 0.00 4.04
387 389 2.835895 GTCCGCTCCTCCCCTCTC 60.836 72.222 0.00 0.00 0.00 3.20
388 390 4.824515 CGTCCGCTCCTCCCCTCT 62.825 72.222 0.00 0.00 0.00 3.69
389 391 4.816984 TCGTCCGCTCCTCCCCTC 62.817 72.222 0.00 0.00 0.00 4.30
390 392 4.824515 CTCGTCCGCTCCTCCCCT 62.825 72.222 0.00 0.00 0.00 4.79
394 396 4.816984 TCCCCTCGTCCGCTCCTC 62.817 72.222 0.00 0.00 0.00 3.71
395 397 4.824515 CTCCCCTCGTCCGCTCCT 62.825 72.222 0.00 0.00 0.00 3.69
397 399 3.827898 CACTCCCCTCGTCCGCTC 61.828 72.222 0.00 0.00 0.00 5.03
409 411 0.954452 CAGACAAAACTGGGCACTCC 59.046 55.000 0.00 0.00 34.64 3.85
410 412 1.604278 GACAGACAAAACTGGGCACTC 59.396 52.381 0.00 0.00 41.59 3.51
411 413 1.064758 TGACAGACAAAACTGGGCACT 60.065 47.619 0.00 0.00 41.59 4.40
412 414 1.065551 GTGACAGACAAAACTGGGCAC 59.934 52.381 0.00 0.00 41.59 5.01
413 415 1.388547 GTGACAGACAAAACTGGGCA 58.611 50.000 0.00 0.00 41.59 5.36
414 416 0.307760 CGTGACAGACAAAACTGGGC 59.692 55.000 0.00 0.00 41.59 5.36
415 417 1.663695 ACGTGACAGACAAAACTGGG 58.336 50.000 0.00 0.00 41.59 4.45
416 418 2.542595 GGTACGTGACAGACAAAACTGG 59.457 50.000 0.00 0.00 41.59 4.00
417 419 2.542595 GGGTACGTGACAGACAAAACTG 59.457 50.000 0.00 0.00 42.78 3.16
418 420 2.168936 TGGGTACGTGACAGACAAAACT 59.831 45.455 0.00 0.00 0.00 2.66
419 421 2.553086 TGGGTACGTGACAGACAAAAC 58.447 47.619 0.00 0.00 0.00 2.43
420 422 2.983907 TGGGTACGTGACAGACAAAA 57.016 45.000 0.00 0.00 0.00 2.44
421 423 3.478857 AATGGGTACGTGACAGACAAA 57.521 42.857 0.00 0.00 0.00 2.83
422 424 3.478857 AAATGGGTACGTGACAGACAA 57.521 42.857 0.00 0.00 0.00 3.18
423 425 3.478857 AAAATGGGTACGTGACAGACA 57.521 42.857 0.00 0.00 0.00 3.41
424 426 3.562557 ACAAAAATGGGTACGTGACAGAC 59.437 43.478 0.00 0.00 0.00 3.51
425 427 3.810941 GACAAAAATGGGTACGTGACAGA 59.189 43.478 0.00 0.00 0.00 3.41
426 428 3.058501 GGACAAAAATGGGTACGTGACAG 60.059 47.826 0.00 0.00 0.00 3.51
427 429 2.879646 GGACAAAAATGGGTACGTGACA 59.120 45.455 0.00 0.00 0.00 3.58
428 430 2.879646 TGGACAAAAATGGGTACGTGAC 59.120 45.455 0.00 0.00 0.00 3.67
429 431 2.879646 GTGGACAAAAATGGGTACGTGA 59.120 45.455 0.00 0.00 0.00 4.35
430 432 2.882137 AGTGGACAAAAATGGGTACGTG 59.118 45.455 0.00 0.00 0.00 4.49
431 433 3.217681 AGTGGACAAAAATGGGTACGT 57.782 42.857 0.00 0.00 0.00 3.57
432 434 4.577834 AAAGTGGACAAAAATGGGTACG 57.422 40.909 0.00 0.00 0.00 3.67
433 435 4.509970 GCAAAAGTGGACAAAAATGGGTAC 59.490 41.667 0.00 0.00 0.00 3.34
434 436 4.698575 GCAAAAGTGGACAAAAATGGGTA 58.301 39.130 0.00 0.00 0.00 3.69
435 437 3.540617 GCAAAAGTGGACAAAAATGGGT 58.459 40.909 0.00 0.00 0.00 4.51
436 438 2.543430 CGCAAAAGTGGACAAAAATGGG 59.457 45.455 0.00 0.00 0.00 4.00
437 439 2.032979 GCGCAAAAGTGGACAAAAATGG 60.033 45.455 0.30 0.00 0.00 3.16
438 440 2.032979 GGCGCAAAAGTGGACAAAAATG 60.033 45.455 10.83 0.00 0.00 2.32
439 441 2.209273 GGCGCAAAAGTGGACAAAAAT 58.791 42.857 10.83 0.00 0.00 1.82
440 442 1.646189 GGCGCAAAAGTGGACAAAAA 58.354 45.000 10.83 0.00 0.00 1.94
441 443 0.179097 GGGCGCAAAAGTGGACAAAA 60.179 50.000 10.83 0.00 0.00 2.44
442 444 1.323271 TGGGCGCAAAAGTGGACAAA 61.323 50.000 10.83 0.00 0.00 2.83
443 445 1.733402 CTGGGCGCAAAAGTGGACAA 61.733 55.000 10.83 0.00 0.00 3.18
444 446 2.124109 TGGGCGCAAAAGTGGACA 60.124 55.556 10.83 0.00 0.00 4.02
445 447 1.734388 AACTGGGCGCAAAAGTGGAC 61.734 55.000 10.83 0.00 0.00 4.02
446 448 1.040339 AAACTGGGCGCAAAAGTGGA 61.040 50.000 10.83 0.00 0.00 4.02
447 449 0.875474 CAAACTGGGCGCAAAAGTGG 60.875 55.000 10.83 2.07 0.00 4.00
448 450 0.875474 CCAAACTGGGCGCAAAAGTG 60.875 55.000 10.83 0.00 32.67 3.16
449 451 1.441311 CCAAACTGGGCGCAAAAGT 59.559 52.632 10.83 6.37 32.67 2.66
450 452 4.341827 CCAAACTGGGCGCAAAAG 57.658 55.556 10.83 5.62 32.67 2.27
459 461 0.109723 TTCTTCCCGACCCAAACTGG 59.890 55.000 0.00 0.00 37.25 4.00
460 462 1.235724 GTTCTTCCCGACCCAAACTG 58.764 55.000 0.00 0.00 0.00 3.16
461 463 0.841289 TGTTCTTCCCGACCCAAACT 59.159 50.000 0.00 0.00 0.00 2.66
462 464 0.949397 GTGTTCTTCCCGACCCAAAC 59.051 55.000 0.00 0.00 0.00 2.93
463 465 0.841289 AGTGTTCTTCCCGACCCAAA 59.159 50.000 0.00 0.00 0.00 3.28
464 466 1.345415 GTAGTGTTCTTCCCGACCCAA 59.655 52.381 0.00 0.00 0.00 4.12
465 467 0.971386 GTAGTGTTCTTCCCGACCCA 59.029 55.000 0.00 0.00 0.00 4.51
466 468 0.971386 TGTAGTGTTCTTCCCGACCC 59.029 55.000 0.00 0.00 0.00 4.46
467 469 1.668047 CGTGTAGTGTTCTTCCCGACC 60.668 57.143 0.00 0.00 0.00 4.79
468 470 1.668047 CCGTGTAGTGTTCTTCCCGAC 60.668 57.143 0.00 0.00 0.00 4.79
469 471 0.599558 CCGTGTAGTGTTCTTCCCGA 59.400 55.000 0.00 0.00 0.00 5.14
470 472 0.599558 TCCGTGTAGTGTTCTTCCCG 59.400 55.000 0.00 0.00 0.00 5.14
471 473 1.342174 TGTCCGTGTAGTGTTCTTCCC 59.658 52.381 0.00 0.00 0.00 3.97
472 474 2.035576 ACTGTCCGTGTAGTGTTCTTCC 59.964 50.000 0.00 0.00 0.00 3.46
473 475 3.366440 ACTGTCCGTGTAGTGTTCTTC 57.634 47.619 0.00 0.00 0.00 2.87
474 476 3.255149 CCTACTGTCCGTGTAGTGTTCTT 59.745 47.826 0.00 0.00 36.56 2.52
475 477 2.818432 CCTACTGTCCGTGTAGTGTTCT 59.182 50.000 0.00 0.00 36.56 3.01
476 478 2.670509 GCCTACTGTCCGTGTAGTGTTC 60.671 54.545 0.00 0.00 36.56 3.18
477 479 1.271656 GCCTACTGTCCGTGTAGTGTT 59.728 52.381 0.00 0.00 36.56 3.32
478 480 0.886563 GCCTACTGTCCGTGTAGTGT 59.113 55.000 0.00 0.00 36.56 3.55
479 481 0.179171 CGCCTACTGTCCGTGTAGTG 60.179 60.000 0.00 0.00 36.56 2.74
480 482 1.310933 CCGCCTACTGTCCGTGTAGT 61.311 60.000 0.00 0.00 36.56 2.73
481 483 1.028330 TCCGCCTACTGTCCGTGTAG 61.028 60.000 0.00 0.00 37.66 2.74
482 484 1.002257 TCCGCCTACTGTCCGTGTA 60.002 57.895 0.00 0.00 0.00 2.90
483 485 2.282674 TCCGCCTACTGTCCGTGT 60.283 61.111 0.00 0.00 0.00 4.49
484 486 2.181021 GTCCGCCTACTGTCCGTG 59.819 66.667 0.00 0.00 0.00 4.94
485 487 2.282674 TGTCCGCCTACTGTCCGT 60.283 61.111 0.00 0.00 0.00 4.69
486 488 2.181021 GTGTCCGCCTACTGTCCG 59.819 66.667 0.00 0.00 0.00 4.79
487 489 2.577593 GGTGTCCGCCTACTGTCC 59.422 66.667 0.00 0.00 0.00 4.02
488 490 2.577593 GGGTGTCCGCCTACTGTC 59.422 66.667 0.00 0.00 0.00 3.51
498 500 1.078988 TAAACGGATGCGGGTGTCC 60.079 57.895 12.44 0.00 0.00 4.02
499 501 1.087771 CCTAAACGGATGCGGGTGTC 61.088 60.000 12.44 0.00 33.16 3.67
500 502 1.078708 CCTAAACGGATGCGGGTGT 60.079 57.895 12.44 0.00 33.16 4.16
501 503 1.078708 ACCTAAACGGATGCGGGTG 60.079 57.895 12.44 0.00 36.31 4.61
502 504 1.219935 GACCTAAACGGATGCGGGT 59.780 57.895 12.44 8.38 36.31 5.28
503 505 1.881252 CGACCTAAACGGATGCGGG 60.881 63.158 12.44 4.71 36.31 6.13
504 506 2.522638 GCGACCTAAACGGATGCGG 61.523 63.158 12.44 0.00 36.31 5.69
505 507 2.522638 GGCGACCTAAACGGATGCG 61.523 63.158 4.58 4.58 37.33 4.73
506 508 3.406559 GGCGACCTAAACGGATGC 58.593 61.111 0.00 0.00 36.27 3.91
524 526 3.056179 AGACATAAAATTTGGCCCAACGG 60.056 43.478 0.00 0.00 0.00 4.44
525 527 3.925913 CAGACATAAAATTTGGCCCAACG 59.074 43.478 0.00 0.00 0.00 4.10
526 528 5.146010 TCAGACATAAAATTTGGCCCAAC 57.854 39.130 0.00 0.00 0.00 3.77
527 529 5.815233 TTCAGACATAAAATTTGGCCCAA 57.185 34.783 0.00 0.00 0.00 4.12
528 530 5.483231 TCATTCAGACATAAAATTTGGCCCA 59.517 36.000 0.00 0.00 0.00 5.36
529 531 5.812127 GTCATTCAGACATAAAATTTGGCCC 59.188 40.000 0.00 0.00 46.77 5.80
530 532 6.892310 GTCATTCAGACATAAAATTTGGCC 57.108 37.500 0.00 0.00 46.77 5.36
543 545 5.873179 TTATTCGTTTGGGTCATTCAGAC 57.127 39.130 0.00 0.00 46.83 3.51
544 546 6.885952 TTTTATTCGTTTGGGTCATTCAGA 57.114 33.333 0.00 0.00 0.00 3.27
545 547 6.531240 CCATTTTATTCGTTTGGGTCATTCAG 59.469 38.462 0.00 0.00 0.00 3.02
546 548 6.393990 CCATTTTATTCGTTTGGGTCATTCA 58.606 36.000 0.00 0.00 0.00 2.57
547 549 5.810074 CCCATTTTATTCGTTTGGGTCATTC 59.190 40.000 0.00 0.00 41.78 2.67
548 550 5.729510 CCCATTTTATTCGTTTGGGTCATT 58.270 37.500 0.00 0.00 41.78 2.57
549 551 5.337578 CCCATTTTATTCGTTTGGGTCAT 57.662 39.130 0.00 0.00 41.78 3.06
550 552 4.792521 CCCATTTTATTCGTTTGGGTCA 57.207 40.909 0.00 0.00 41.78 4.02
554 556 3.175929 GCGACCCATTTTATTCGTTTGG 58.824 45.455 0.00 0.00 33.95 3.28
555 557 3.175929 GGCGACCCATTTTATTCGTTTG 58.824 45.455 0.00 0.00 33.95 2.93
556 558 3.497297 GGCGACCCATTTTATTCGTTT 57.503 42.857 0.00 0.00 33.95 3.60
571 573 2.943653 CAACTTCAACGGGGCGAC 59.056 61.111 0.00 0.00 0.00 5.19
572 574 2.975799 GCAACTTCAACGGGGCGA 60.976 61.111 0.00 0.00 0.00 5.54
573 575 2.966309 GAGCAACTTCAACGGGGCG 61.966 63.158 0.00 0.00 0.00 6.13
574 576 0.321298 TAGAGCAACTTCAACGGGGC 60.321 55.000 0.00 0.00 0.00 5.80
575 577 1.804748 GTTAGAGCAACTTCAACGGGG 59.195 52.381 0.00 0.00 34.06 5.73
576 578 2.767505 AGTTAGAGCAACTTCAACGGG 58.232 47.619 0.00 0.00 45.54 5.28
577 579 5.235616 TGTTTAGTTAGAGCAACTTCAACGG 59.764 40.000 0.00 0.00 45.54 4.44
578 580 6.200286 TCTGTTTAGTTAGAGCAACTTCAACG 59.800 38.462 0.00 0.00 45.54 4.10
579 581 7.478520 TCTGTTTAGTTAGAGCAACTTCAAC 57.521 36.000 0.00 1.19 45.54 3.18
580 582 8.677148 AATCTGTTTAGTTAGAGCAACTTCAA 57.323 30.769 0.00 0.00 45.54 2.69
581 583 8.677148 AAATCTGTTTAGTTAGAGCAACTTCA 57.323 30.769 0.00 0.00 45.54 3.02
582 584 9.600646 GAAAATCTGTTTAGTTAGAGCAACTTC 57.399 33.333 0.00 0.00 45.54 3.01
583 585 8.283291 CGAAAATCTGTTTAGTTAGAGCAACTT 58.717 33.333 0.00 0.00 45.54 2.66
585 587 6.520104 GCGAAAATCTGTTTAGTTAGAGCAAC 59.480 38.462 0.00 0.00 37.41 4.17
586 588 6.203915 TGCGAAAATCTGTTTAGTTAGAGCAA 59.796 34.615 0.00 0.00 0.00 3.91
587 589 5.699001 TGCGAAAATCTGTTTAGTTAGAGCA 59.301 36.000 0.00 0.00 0.00 4.26
588 590 6.016111 GTGCGAAAATCTGTTTAGTTAGAGC 58.984 40.000 0.00 0.00 0.00 4.09
589 591 6.128902 ACGTGCGAAAATCTGTTTAGTTAGAG 60.129 38.462 0.00 0.00 0.00 2.43
590 592 5.693104 ACGTGCGAAAATCTGTTTAGTTAGA 59.307 36.000 0.00 0.00 0.00 2.10
591 593 5.912528 ACGTGCGAAAATCTGTTTAGTTAG 58.087 37.500 0.00 0.00 0.00 2.34
592 594 5.693104 AGACGTGCGAAAATCTGTTTAGTTA 59.307 36.000 0.00 0.00 0.00 2.24
593 595 4.510340 AGACGTGCGAAAATCTGTTTAGTT 59.490 37.500 0.00 0.00 0.00 2.24
594 596 4.056050 AGACGTGCGAAAATCTGTTTAGT 58.944 39.130 0.00 0.00 0.00 2.24
595 597 4.647291 AGACGTGCGAAAATCTGTTTAG 57.353 40.909 0.00 0.00 0.00 1.85
596 598 4.748102 AGAAGACGTGCGAAAATCTGTTTA 59.252 37.500 0.00 0.00 0.00 2.01
597 599 3.560068 AGAAGACGTGCGAAAATCTGTTT 59.440 39.130 0.00 0.00 0.00 2.83
598 600 3.131396 AGAAGACGTGCGAAAATCTGTT 58.869 40.909 0.00 0.00 0.00 3.16
599 601 2.731976 GAGAAGACGTGCGAAAATCTGT 59.268 45.455 0.00 0.00 0.00 3.41
600 602 2.989840 AGAGAAGACGTGCGAAAATCTG 59.010 45.455 0.00 0.00 0.00 2.90
601 603 3.246619 GAGAGAAGACGTGCGAAAATCT 58.753 45.455 0.00 0.00 0.00 2.40
602 604 2.026978 CGAGAGAAGACGTGCGAAAATC 59.973 50.000 0.00 0.00 0.00 2.17
603 605 1.986378 CGAGAGAAGACGTGCGAAAAT 59.014 47.619 0.00 0.00 0.00 1.82
604 606 1.002142 TCGAGAGAAGACGTGCGAAAA 60.002 47.619 0.00 0.00 37.03 2.29
605 607 0.589708 TCGAGAGAAGACGTGCGAAA 59.410 50.000 0.00 0.00 37.03 3.46
606 608 2.241171 TCGAGAGAAGACGTGCGAA 58.759 52.632 0.00 0.00 37.03 4.70
607 609 3.961729 TCGAGAGAAGACGTGCGA 58.038 55.556 0.00 0.00 37.03 5.10
618 620 1.482278 GCCGCTCACTTTATCGAGAG 58.518 55.000 0.00 0.00 0.00 3.20
619 621 0.102481 GGCCGCTCACTTTATCGAGA 59.898 55.000 0.00 0.00 0.00 4.04
620 622 0.876342 GGGCCGCTCACTTTATCGAG 60.876 60.000 0.00 0.00 0.00 4.04
621 623 1.143183 GGGCCGCTCACTTTATCGA 59.857 57.895 0.00 0.00 0.00 3.59
622 624 0.876342 GAGGGCCGCTCACTTTATCG 60.876 60.000 14.36 0.00 0.00 2.92
623 625 0.533085 GGAGGGCCGCTCACTTTATC 60.533 60.000 19.17 0.00 0.00 1.75
624 626 1.527370 GGAGGGCCGCTCACTTTAT 59.473 57.895 19.17 0.00 0.00 1.40
625 627 2.987125 GGAGGGCCGCTCACTTTA 59.013 61.111 19.17 0.00 0.00 1.85
639 641 1.021390 AACAAGAAGATGCGCCGGAG 61.021 55.000 5.05 1.55 0.00 4.63
640 642 0.605319 AAACAAGAAGATGCGCCGGA 60.605 50.000 5.05 0.00 0.00 5.14
641 643 0.240945 AAAACAAGAAGATGCGCCGG 59.759 50.000 4.18 0.00 0.00 6.13
642 644 1.069296 TCAAAACAAGAAGATGCGCCG 60.069 47.619 4.18 0.00 0.00 6.46
643 645 2.589014 CTCAAAACAAGAAGATGCGCC 58.411 47.619 4.18 0.00 0.00 6.53
644 646 1.981533 GCTCAAAACAAGAAGATGCGC 59.018 47.619 0.00 0.00 0.00 6.09
645 647 3.272439 TGCTCAAAACAAGAAGATGCG 57.728 42.857 0.00 0.00 0.00 4.73
646 648 5.056894 AGATGCTCAAAACAAGAAGATGC 57.943 39.130 0.00 0.00 0.00 3.91
647 649 7.650504 TGAAAAGATGCTCAAAACAAGAAGATG 59.349 33.333 0.00 0.00 0.00 2.90
648 650 7.719483 TGAAAAGATGCTCAAAACAAGAAGAT 58.281 30.769 0.00 0.00 0.00 2.40
649 651 7.099266 TGAAAAGATGCTCAAAACAAGAAGA 57.901 32.000 0.00 0.00 0.00 2.87
650 652 7.568861 GCATGAAAAGATGCTCAAAACAAGAAG 60.569 37.037 0.00 0.00 44.57 2.85
651 653 6.201425 GCATGAAAAGATGCTCAAAACAAGAA 59.799 34.615 0.00 0.00 44.57 2.52
652 654 5.693104 GCATGAAAAGATGCTCAAAACAAGA 59.307 36.000 0.00 0.00 44.57 3.02
653 655 5.912528 GCATGAAAAGATGCTCAAAACAAG 58.087 37.500 0.00 0.00 44.57 3.16
654 656 5.910637 GCATGAAAAGATGCTCAAAACAA 57.089 34.783 0.00 0.00 44.57 2.83
664 666 2.821378 TGTGTGGGAGCATGAAAAGATG 59.179 45.455 0.00 0.00 0.00 2.90
665 667 3.087031 CTGTGTGGGAGCATGAAAAGAT 58.913 45.455 0.00 0.00 0.00 2.40
666 668 2.507484 CTGTGTGGGAGCATGAAAAGA 58.493 47.619 0.00 0.00 0.00 2.52
667 669 1.068055 GCTGTGTGGGAGCATGAAAAG 60.068 52.381 0.00 0.00 36.40 2.27
668 670 0.961019 GCTGTGTGGGAGCATGAAAA 59.039 50.000 0.00 0.00 36.40 2.29
669 671 1.236616 CGCTGTGTGGGAGCATGAAA 61.237 55.000 0.00 0.00 36.12 2.69
670 672 1.672030 CGCTGTGTGGGAGCATGAA 60.672 57.895 0.00 0.00 36.12 2.57
671 673 2.046988 CGCTGTGTGGGAGCATGA 60.047 61.111 0.00 0.00 36.12 3.07
672 674 3.807538 GCGCTGTGTGGGAGCATG 61.808 66.667 0.00 0.00 36.12 4.06
676 678 3.939837 ATGTCGCGCTGTGTGGGAG 62.940 63.158 5.56 0.00 35.79 4.30
677 679 4.002506 ATGTCGCGCTGTGTGGGA 62.003 61.111 5.56 0.00 32.83 4.37
678 680 3.792047 CATGTCGCGCTGTGTGGG 61.792 66.667 5.56 0.00 0.00 4.61
679 681 3.792047 CCATGTCGCGCTGTGTGG 61.792 66.667 5.56 5.04 0.00 4.17
680 682 4.450122 GCCATGTCGCGCTGTGTG 62.450 66.667 5.56 0.00 0.00 3.82
710 712 1.934220 GACTCCCATGCACTCGTCGA 61.934 60.000 0.00 0.00 0.00 4.20
719 721 2.439156 GGCTGTGGACTCCCATGC 60.439 66.667 0.00 0.00 45.68 4.06
721 723 1.845627 CTGTGGCTGTGGACTCCCAT 61.846 60.000 0.00 0.00 45.68 4.00
722 724 2.447572 TGTGGCTGTGGACTCCCA 60.448 61.111 0.00 0.00 40.95 4.37
756 758 3.764466 CGACTTCCCGCTGGAGCT 61.764 66.667 0.00 0.00 43.07 4.09
759 765 1.001764 TAGACGACTTCCCGCTGGA 60.002 57.895 0.00 0.00 39.54 3.86
762 768 1.001145 AGGTAGACGACTTCCCGCT 60.001 57.895 6.92 0.00 34.70 5.52
773 779 4.468689 GTGGGGCGGCAGGTAGAC 62.469 72.222 12.47 0.00 0.00 2.59
784 790 3.385749 ATCGATGACGTGGTGGGGC 62.386 63.158 0.00 0.00 40.69 5.80
787 793 1.588932 CGGATCGATGACGTGGTGG 60.589 63.158 0.54 0.00 40.69 4.61
789 795 2.104331 GCGGATCGATGACGTGGT 59.896 61.111 17.21 0.00 40.69 4.16
807 813 2.753966 GGACATGATGCGCTTGCGT 61.754 57.895 16.38 0.00 43.34 5.24
844 850 3.000819 AGTGGATCCGGCCGTTCA 61.001 61.111 26.12 8.81 0.00 3.18
900 906 3.747976 GTGGGATGTGGTTGGCGC 61.748 66.667 0.00 0.00 0.00 6.53
901 907 3.061848 GGTGGGATGTGGTTGGCG 61.062 66.667 0.00 0.00 0.00 5.69
902 908 1.678970 GAGGTGGGATGTGGTTGGC 60.679 63.158 0.00 0.00 0.00 4.52
903 909 1.000896 GGAGGTGGGATGTGGTTGG 60.001 63.158 0.00 0.00 0.00 3.77
904 910 0.405585 AAGGAGGTGGGATGTGGTTG 59.594 55.000 0.00 0.00 0.00 3.77
905 911 0.698818 GAAGGAGGTGGGATGTGGTT 59.301 55.000 0.00 0.00 0.00 3.67
906 912 1.208165 GGAAGGAGGTGGGATGTGGT 61.208 60.000 0.00 0.00 0.00 4.16
912 918 4.332543 AGCGGGAAGGAGGTGGGA 62.333 66.667 0.00 0.00 0.00 4.37
1230 1432 2.594303 CGGGTGCACCTGCTTCAA 60.594 61.111 33.91 0.00 42.66 2.69
1476 1741 1.405821 CGACGAGGATCAAGCCTAAGT 59.594 52.381 0.00 0.00 38.73 2.24
1478 1743 0.102481 GCGACGAGGATCAAGCCTAA 59.898 55.000 0.00 0.00 38.73 2.69
1845 2442 8.340443 TCTGAATCTAATGCATTCTGAATTTCG 58.660 33.333 16.86 12.05 36.09 3.46
1876 2473 9.995957 GAAAAGCCTCTAATTTATCTCAAGAAC 57.004 33.333 0.00 0.00 0.00 3.01
2056 2709 6.775708 AGAAAAATTACCTAGTGTGGCAGTA 58.224 36.000 0.00 0.00 0.00 2.74
2121 2775 1.137872 TGCGCCTTCACAAAATTGGTT 59.862 42.857 4.18 0.00 0.00 3.67
2300 2955 1.640428 CTTGCAATAGACTTCGCGGA 58.360 50.000 6.13 0.00 0.00 5.54
2301 2956 0.026803 GCTTGCAATAGACTTCGCGG 59.973 55.000 6.13 0.00 0.00 6.46
2302 2957 1.002366 AGCTTGCAATAGACTTCGCG 58.998 50.000 0.00 0.00 0.00 5.87
2303 2958 1.530646 GCAGCTTGCAATAGACTTCGC 60.531 52.381 0.00 0.00 44.26 4.70
2326 2981 8.825667 ACTTTTGTTTTTCTTTAGTGCTGAAA 57.174 26.923 0.00 0.00 0.00 2.69
2329 2984 6.020678 CCGACTTTTGTTTTTCTTTAGTGCTG 60.021 38.462 0.00 0.00 0.00 4.41
2330 2985 6.033966 CCGACTTTTGTTTTTCTTTAGTGCT 58.966 36.000 0.00 0.00 0.00 4.40
2331 2986 6.031471 TCCGACTTTTGTTTTTCTTTAGTGC 58.969 36.000 0.00 0.00 0.00 4.40
2332 2987 7.253190 CGTTCCGACTTTTGTTTTTCTTTAGTG 60.253 37.037 0.00 0.00 0.00 2.74
2333 2988 6.744082 CGTTCCGACTTTTGTTTTTCTTTAGT 59.256 34.615 0.00 0.00 0.00 2.24
2334 2989 6.962678 TCGTTCCGACTTTTGTTTTTCTTTAG 59.037 34.615 0.00 0.00 0.00 1.85
2335 2990 6.840075 TCGTTCCGACTTTTGTTTTTCTTTA 58.160 32.000 0.00 0.00 0.00 1.85
2336 2991 5.701855 TCGTTCCGACTTTTGTTTTTCTTT 58.298 33.333 0.00 0.00 0.00 2.52
2337 2992 5.122711 TCTCGTTCCGACTTTTGTTTTTCTT 59.877 36.000 0.00 0.00 0.00 2.52
2338 2993 4.632688 TCTCGTTCCGACTTTTGTTTTTCT 59.367 37.500 0.00 0.00 0.00 2.52
2339 2994 4.900664 TCTCGTTCCGACTTTTGTTTTTC 58.099 39.130 0.00 0.00 0.00 2.29
2347 3584 4.252971 TCATTTCTCTCGTTCCGACTTT 57.747 40.909 0.00 0.00 0.00 2.66
2549 3807 7.648039 TGTTTTGTACTACTGGATTTGGTTT 57.352 32.000 0.00 0.00 0.00 3.27
2551 3809 7.648039 TTTGTTTTGTACTACTGGATTTGGT 57.352 32.000 0.00 0.00 0.00 3.67
2553 3811 9.743057 TTGATTTGTTTTGTACTACTGGATTTG 57.257 29.630 0.00 0.00 0.00 2.32
2581 3839 5.067954 GGAGCCTTTGTTGTTTCTTAGGTA 58.932 41.667 0.00 0.00 0.00 3.08
2596 3854 3.287867 CTACATGTCCATGGAGCCTTT 57.712 47.619 16.81 1.13 42.32 3.11


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.