Multiple sequence alignment - TraesCS6B01G049000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G049000 chr6B 100.000 3840 0 0 1 3840 28924919 28928758 0.000000e+00 7092.0
1 TraesCS6B01G049000 chr6B 88.353 996 78 25 847 1831 28256894 28255926 0.000000e+00 1162.0
2 TraesCS6B01G049000 chr6B 94.079 760 41 2 1 756 28257833 28257074 0.000000e+00 1151.0
3 TraesCS6B01G049000 chr6B 89.249 865 54 18 867 1720 59232563 59233399 0.000000e+00 1046.0
4 TraesCS6B01G049000 chr6B 88.830 761 56 21 935 1679 28980420 28979673 0.000000e+00 907.0
5 TraesCS6B01G049000 chr6B 83.114 456 74 3 3360 3813 59296517 59296971 2.760000e-111 412.0
6 TraesCS6B01G049000 chr6B 77.917 720 106 27 2442 3122 582812556 582813261 2.150000e-107 399.0
7 TraesCS6B01G049000 chr6B 76.675 776 119 38 2432 3158 638500713 638499951 1.300000e-99 374.0
8 TraesCS6B01G049000 chr6B 82.429 387 66 2 3360 3744 28515768 28515382 1.710000e-88 337.0
9 TraesCS6B01G049000 chr6B 80.134 448 70 11 3383 3813 28720008 28720453 2.230000e-82 316.0
10 TraesCS6B01G049000 chr6B 90.132 152 12 3 2252 2400 28715393 28715544 1.090000e-45 195.0
11 TraesCS6B01G049000 chr6B 86.154 130 12 3 73 196 28517959 28517830 6.690000e-28 135.0
12 TraesCS6B01G049000 chr6B 93.103 87 5 1 2273 2359 59296185 59296270 4.030000e-25 126.0
13 TraesCS6B01G049000 chr6B 96.875 64 2 0 787 850 28256996 28256933 1.460000e-19 108.0
14 TraesCS6B01G049000 chr6A 88.086 982 90 19 867 1833 16658939 16657970 0.000000e+00 1140.0
15 TraesCS6B01G049000 chr6A 90.788 825 54 16 867 1682 16594037 16593226 0.000000e+00 1083.0
16 TraesCS6B01G049000 chr6A 88.903 766 60 18 928 1679 16720388 16719634 0.000000e+00 920.0
17 TraesCS6B01G049000 chr6A 91.447 152 10 3 2252 2400 16702699 16702850 5.030000e-49 206.0
18 TraesCS6B01G049000 chr6A 89.041 73 4 2 2106 2176 16657642 16657572 1.900000e-13 87.9
19 TraesCS6B01G049000 chr6A 91.935 62 4 1 789 850 16659094 16659034 6.840000e-13 86.1
20 TraesCS6B01G049000 chr6D 90.640 844 60 14 1031 1869 16390173 16389344 0.000000e+00 1103.0
21 TraesCS6B01G049000 chr6D 85.830 988 99 32 867 1834 16502656 16503622 0.000000e+00 1011.0
22 TraesCS6B01G049000 chr6D 90.339 766 52 16 928 1679 16523379 16522622 0.000000e+00 985.0
23 TraesCS6B01G049000 chr6D 84.358 895 69 36 965 1801 29381439 29380558 0.000000e+00 811.0
24 TraesCS6B01G049000 chr6D 93.651 315 17 3 4 315 16366214 16365900 5.810000e-128 468.0
25 TraesCS6B01G049000 chr6D 93.103 319 16 3 4 318 16309177 16308861 2.700000e-126 462.0
26 TraesCS6B01G049000 chr6D 77.386 765 125 38 2432 3177 413981823 413982558 9.930000e-111 411.0
27 TraesCS6B01G049000 chr6D 90.311 289 27 1 319 606 16308287 16307999 1.010000e-100 377.0
28 TraesCS6B01G049000 chr6D 95.973 149 6 0 1903 2051 16389266 16389118 3.830000e-60 243.0
29 TraesCS6B01G049000 chr6D 89.781 137 12 2 2299 2433 16388568 16388432 1.420000e-39 174.0
30 TraesCS6B01G049000 chr1B 89.857 769 47 18 928 1679 587472695 587473449 0.000000e+00 959.0
31 TraesCS6B01G049000 chr7A 80.215 743 120 24 2442 3165 446366673 446367407 2.030000e-147 532.0
32 TraesCS6B01G049000 chr7A 79.650 742 125 24 2442 3165 446365295 446366028 9.520000e-141 510.0
33 TraesCS6B01G049000 chr2A 79.462 706 104 26 2431 3122 175783616 175784294 2.700000e-126 462.0
34 TraesCS6B01G049000 chr2A 79.010 667 102 30 2445 3094 108258033 108258678 4.590000e-114 422.0
35 TraesCS6B01G049000 chr5D 77.881 755 124 34 2432 3165 29138534 29137802 2.740000e-116 429.0
36 TraesCS6B01G049000 chr7D 78.091 744 113 32 2458 3165 78311599 78310870 3.550000e-115 425.0
37 TraesCS6B01G049000 chr2D 76.448 518 91 22 2432 2937 106957518 106958016 6.370000e-63 252.0
38 TraesCS6B01G049000 chr3B 75.785 446 85 13 57 487 102589805 102590242 1.810000e-48 204.0
39 TraesCS6B01G049000 chr3A 90.625 64 6 0 1964 2027 66251017 66251080 6.840000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G049000 chr6B 28924919 28928758 3839 False 7092.000000 7092 100.000000 1 3840 1 chr6B.!!$F3 3839
1 TraesCS6B01G049000 chr6B 59232563 59233399 836 False 1046.000000 1046 89.249000 867 1720 1 chr6B.!!$F4 853
2 TraesCS6B01G049000 chr6B 28979673 28980420 747 True 907.000000 907 88.830000 935 1679 1 chr6B.!!$R1 744
3 TraesCS6B01G049000 chr6B 28255926 28257833 1907 True 807.000000 1162 93.102333 1 1831 3 chr6B.!!$R3 1830
4 TraesCS6B01G049000 chr6B 582812556 582813261 705 False 399.000000 399 77.917000 2442 3122 1 chr6B.!!$F5 680
5 TraesCS6B01G049000 chr6B 638499951 638500713 762 True 374.000000 374 76.675000 2432 3158 1 chr6B.!!$R2 726
6 TraesCS6B01G049000 chr6B 59296185 59296971 786 False 269.000000 412 88.108500 2273 3813 2 chr6B.!!$F6 1540
7 TraesCS6B01G049000 chr6B 28515382 28517959 2577 True 236.000000 337 84.291500 73 3744 2 chr6B.!!$R4 3671
8 TraesCS6B01G049000 chr6A 16593226 16594037 811 True 1083.000000 1083 90.788000 867 1682 1 chr6A.!!$R1 815
9 TraesCS6B01G049000 chr6A 16719634 16720388 754 True 920.000000 920 88.903000 928 1679 1 chr6A.!!$R2 751
10 TraesCS6B01G049000 chr6A 16657572 16659094 1522 True 438.000000 1140 89.687333 789 2176 3 chr6A.!!$R3 1387
11 TraesCS6B01G049000 chr6D 16502656 16503622 966 False 1011.000000 1011 85.830000 867 1834 1 chr6D.!!$F1 967
12 TraesCS6B01G049000 chr6D 16522622 16523379 757 True 985.000000 985 90.339000 928 1679 1 chr6D.!!$R2 751
13 TraesCS6B01G049000 chr6D 29380558 29381439 881 True 811.000000 811 84.358000 965 1801 1 chr6D.!!$R3 836
14 TraesCS6B01G049000 chr6D 16388432 16390173 1741 True 506.666667 1103 92.131333 1031 2433 3 chr6D.!!$R5 1402
15 TraesCS6B01G049000 chr6D 16307999 16309177 1178 True 419.500000 462 91.707000 4 606 2 chr6D.!!$R4 602
16 TraesCS6B01G049000 chr6D 413981823 413982558 735 False 411.000000 411 77.386000 2432 3177 1 chr6D.!!$F2 745
17 TraesCS6B01G049000 chr1B 587472695 587473449 754 False 959.000000 959 89.857000 928 1679 1 chr1B.!!$F1 751
18 TraesCS6B01G049000 chr7A 446365295 446367407 2112 False 521.000000 532 79.932500 2442 3165 2 chr7A.!!$F1 723
19 TraesCS6B01G049000 chr2A 175783616 175784294 678 False 462.000000 462 79.462000 2431 3122 1 chr2A.!!$F2 691
20 TraesCS6B01G049000 chr2A 108258033 108258678 645 False 422.000000 422 79.010000 2445 3094 1 chr2A.!!$F1 649
21 TraesCS6B01G049000 chr5D 29137802 29138534 732 True 429.000000 429 77.881000 2432 3165 1 chr5D.!!$R1 733
22 TraesCS6B01G049000 chr7D 78310870 78311599 729 True 425.000000 425 78.091000 2458 3165 1 chr7D.!!$R1 707

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
566 1148 1.520342 CAAGCCAGAGAGCTACCGC 60.520 63.158 0.0 0.0 44.11 5.68 F
1059 1817 0.102120 CTCAGAGCACTCCGATCCAC 59.898 60.000 0.0 0.0 0.00 4.02 F
1651 2438 1.298859 CCCAAAGAAGAAGGTCGCCG 61.299 60.000 0.0 0.0 0.00 6.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2219 3325 1.004745 AGGCATTCCGGTGAATCTTGT 59.995 47.619 0.00 0.0 39.20 3.16 R
2226 3332 1.073125 TCTTTGAAGGCATTCCGGTGA 59.927 47.619 8.88 0.0 37.47 4.02 R
3582 6692 0.174389 CGTGCCTGTCTGTCTATGCT 59.826 55.000 0.00 0.0 0.00 3.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 4.756642 TGTTGTGAGATGGTGAATGTTCTC 59.243 41.667 0.00 0.00 36.09 2.87
239 247 7.719483 TGTTTTCTCGACCTTTTCTTCTACTA 58.281 34.615 0.00 0.00 0.00 1.82
272 280 5.480205 AGGTTCCTATGTCTTCGACTTTTC 58.520 41.667 0.00 0.00 33.15 2.29
323 904 6.469595 GCTAGATGGATATCGACGATTTGTAC 59.530 42.308 16.73 4.40 38.38 2.90
324 905 6.327279 AGATGGATATCGACGATTTGTACA 57.673 37.500 16.73 9.94 38.38 2.90
476 1057 1.573108 GATTGGGGAGACAGAGGTGA 58.427 55.000 0.00 0.00 0.00 4.02
491 1072 4.039004 CAGAGGTGATGAGTGGAAGATAGG 59.961 50.000 0.00 0.00 0.00 2.57
501 1082 5.163405 TGAGTGGAAGATAGGCATAGTTGAC 60.163 44.000 0.00 0.00 0.00 3.18
502 1083 4.716784 AGTGGAAGATAGGCATAGTTGACA 59.283 41.667 0.00 0.00 30.96 3.58
535 1117 4.503714 AAAAATGAAGCCGGATCCTCTA 57.496 40.909 5.05 0.00 0.00 2.43
566 1148 1.520342 CAAGCCAGAGAGCTACCGC 60.520 63.158 0.00 0.00 44.11 5.68
595 1177 6.662234 TCTTTACATAGAACGGAGAAGAGGAA 59.338 38.462 0.00 0.00 0.00 3.36
600 1182 3.702792 AGAACGGAGAAGAGGAATCAGA 58.297 45.455 0.00 0.00 0.00 3.27
621 1203 4.819630 AGAAAGATTGCACCGTTCTACAAA 59.180 37.500 12.50 0.00 32.19 2.83
711 1293 3.761218 TCATAATTTTCGAAAGGCCAGCA 59.239 39.130 10.98 0.00 0.00 4.41
744 1326 2.362717 GGGTGCTGTACTATCCTCTGAC 59.637 54.545 0.00 0.00 0.00 3.51
756 1338 3.847042 TCCTCTGACTTCCCTCCTAAA 57.153 47.619 0.00 0.00 0.00 1.85
757 1339 3.714144 TCCTCTGACTTCCCTCCTAAAG 58.286 50.000 0.00 0.00 0.00 1.85
758 1340 3.077695 TCCTCTGACTTCCCTCCTAAAGT 59.922 47.826 0.00 0.00 38.40 2.66
759 1341 3.841255 CCTCTGACTTCCCTCCTAAAGTT 59.159 47.826 0.00 0.00 35.90 2.66
760 1342 5.024118 CCTCTGACTTCCCTCCTAAAGTTA 58.976 45.833 0.00 0.00 35.90 2.24
761 1343 5.128008 CCTCTGACTTCCCTCCTAAAGTTAG 59.872 48.000 0.00 0.00 39.29 2.34
762 1344 5.900437 TCTGACTTCCCTCCTAAAGTTAGA 58.100 41.667 5.84 5.84 42.43 2.10
763 1345 6.320518 TCTGACTTCCCTCCTAAAGTTAGAA 58.679 40.000 7.12 0.00 42.01 2.10
764 1346 6.437793 TCTGACTTCCCTCCTAAAGTTAGAAG 59.562 42.308 7.12 0.00 42.01 2.85
765 1347 6.320518 TGACTTCCCTCCTAAAGTTAGAAGA 58.679 40.000 0.00 0.00 35.90 2.87
776 1358 8.700051 TCCTAAAGTTAGAAGATCTCAATCCAG 58.300 37.037 0.00 0.00 32.47 3.86
839 1480 5.099575 ACGACCAAACAACAAAATCAGAAC 58.900 37.500 0.00 0.00 0.00 3.01
855 1539 1.886542 AGAACCGAAGCCCATTTCAAC 59.113 47.619 0.00 0.00 0.00 3.18
1017 1767 1.104577 TCCAATAAAATCCGCGCCCC 61.105 55.000 0.00 0.00 0.00 5.80
1059 1817 0.102120 CTCAGAGCACTCCGATCCAC 59.898 60.000 0.00 0.00 0.00 4.02
1133 1898 4.503314 GCAAGCAAGATGGCCGGC 62.503 66.667 21.18 21.18 0.00 6.13
1320 2089 1.660355 GTATGCGCCGATCTCTCCA 59.340 57.895 4.18 0.00 0.00 3.86
1366 2143 2.511600 GCCCTGTTCGACGGATGG 60.512 66.667 0.00 0.00 0.00 3.51
1619 2403 2.072298 CAAGTCGCCCAAGAAGAAGAG 58.928 52.381 0.00 0.00 0.00 2.85
1635 2419 2.776526 AGCACCACCAAGTCCCCA 60.777 61.111 0.00 0.00 0.00 4.96
1651 2438 1.298859 CCCAAAGAAGAAGGTCGCCG 61.299 60.000 0.00 0.00 0.00 6.46
1699 2507 2.040278 AGCCAGTGTTGCTTAGATCCAA 59.960 45.455 0.00 0.00 34.87 3.53
1751 2580 4.775780 TGTAATGCCTGGTAGTCTGTAGTT 59.224 41.667 0.00 0.00 0.00 2.24
1807 2645 6.936335 TGTATCTGTGATTTCTGTGACAATGT 59.064 34.615 0.00 0.00 0.00 2.71
1854 2781 4.495422 TGTACTGCGAAATTCTCTCTTCC 58.505 43.478 0.00 0.00 0.00 3.46
1872 2799 1.742831 TCCAGCATCCGAAATTTTCCG 59.257 47.619 3.61 0.00 0.00 4.30
1912 2945 1.827969 GAAGAACTAGCTCTCCCTGCA 59.172 52.381 0.00 0.00 0.00 4.41
2074 3115 4.574828 TGGTTACTGCTCTCTTTGACAAAC 59.425 41.667 0.00 0.00 0.00 2.93
2075 3116 4.023963 GGTTACTGCTCTCTTTGACAAACC 60.024 45.833 0.00 0.00 0.00 3.27
2077 3118 2.945668 ACTGCTCTCTTTGACAAACCAC 59.054 45.455 0.00 0.00 0.00 4.16
2078 3119 2.945008 CTGCTCTCTTTGACAAACCACA 59.055 45.455 0.00 0.00 0.00 4.17
2100 3169 4.502282 CAGACTACATGCGATCTGAAGTTC 59.498 45.833 12.99 0.00 40.92 3.01
2119 3191 6.295719 AGTTCGGATAGTTTGATGTAGGTT 57.704 37.500 0.00 0.00 0.00 3.50
2176 3248 8.831550 GCTAGATGCAAACTAAAATAACTAGCT 58.168 33.333 0.29 0.00 42.84 3.32
2178 3250 8.214721 AGATGCAAACTAAAATAACTAGCTCC 57.785 34.615 0.00 0.00 0.00 4.70
2179 3251 7.829211 AGATGCAAACTAAAATAACTAGCTCCA 59.171 33.333 0.00 0.00 0.00 3.86
2180 3252 7.753309 TGCAAACTAAAATAACTAGCTCCAA 57.247 32.000 0.00 0.00 0.00 3.53
2181 3253 7.590279 TGCAAACTAAAATAACTAGCTCCAAC 58.410 34.615 0.00 0.00 0.00 3.77
2183 3255 8.244113 GCAAACTAAAATAACTAGCTCCAACAT 58.756 33.333 0.00 0.00 0.00 2.71
2221 3327 9.998106 AGAAATTTAGAGTAAGCAAGTAGAACA 57.002 29.630 0.00 0.00 0.00 3.18
2224 3330 9.998106 AATTTAGAGTAAGCAAGTAGAACAAGA 57.002 29.630 0.00 0.00 0.00 3.02
2226 3332 9.998106 TTTAGAGTAAGCAAGTAGAACAAGATT 57.002 29.630 0.00 0.00 0.00 2.40
2227 3333 9.640963 TTAGAGTAAGCAAGTAGAACAAGATTC 57.359 33.333 0.00 0.00 0.00 2.52
2228 3334 7.671302 AGAGTAAGCAAGTAGAACAAGATTCA 58.329 34.615 0.00 0.00 0.00 2.57
2229 3335 7.600752 AGAGTAAGCAAGTAGAACAAGATTCAC 59.399 37.037 0.00 0.00 0.00 3.18
2230 3336 5.948992 AAGCAAGTAGAACAAGATTCACC 57.051 39.130 0.00 0.00 0.00 4.02
2231 3337 3.997021 AGCAAGTAGAACAAGATTCACCG 59.003 43.478 0.00 0.00 0.00 4.94
2232 3338 3.125316 GCAAGTAGAACAAGATTCACCGG 59.875 47.826 0.00 0.00 0.00 5.28
2233 3339 4.566004 CAAGTAGAACAAGATTCACCGGA 58.434 43.478 9.46 0.00 0.00 5.14
2234 3340 4.884668 AGTAGAACAAGATTCACCGGAA 57.115 40.909 9.46 0.00 37.45 4.30
2235 3341 5.422214 AGTAGAACAAGATTCACCGGAAT 57.578 39.130 9.46 0.00 46.27 3.01
2236 3342 5.178797 AGTAGAACAAGATTCACCGGAATG 58.821 41.667 9.46 0.00 43.69 2.67
2249 3355 2.304761 ACCGGAATGCCTTCAAAGAGTA 59.695 45.455 9.46 0.00 32.70 2.59
2250 3356 3.244770 ACCGGAATGCCTTCAAAGAGTAA 60.245 43.478 9.46 0.00 32.70 2.24
2271 3377 9.880064 GAGTAAAGTAGAAAAATGTTCTTCACC 57.120 33.333 0.00 0.00 0.00 4.02
2466 3931 3.258372 ACCTGCGACTTCATGTCTAAGAA 59.742 43.478 0.00 0.00 43.25 2.52
2469 3934 3.258372 TGCGACTTCATGTCTAAGAAGGT 59.742 43.478 7.05 0.00 44.20 3.50
2502 3967 2.417339 TGAACTATCAGCCGCGATAC 57.583 50.000 8.23 0.00 0.00 2.24
2593 4065 5.592104 TTTTTGGAGGAAAGAGGAACAAC 57.408 39.130 0.00 0.00 0.00 3.32
2605 4077 9.358872 GGAAAGAGGAACAACATTGAATAATTC 57.641 33.333 0.00 0.00 0.00 2.17
2681 4159 7.775397 AACATGAAAAGACTTGAAAACATGG 57.225 32.000 0.00 0.00 38.35 3.66
2726 4209 7.950512 ACACTGTTTCCAAATCATGAACATTA 58.049 30.769 0.00 0.00 28.74 1.90
2741 4224 7.427895 TCATGAACATTATTGTATTTGCGAACG 59.572 33.333 0.00 0.00 34.06 3.95
2811 5708 9.783081 AAAGCTGAAACATTATTTGAAATTCCT 57.217 25.926 0.00 0.00 0.00 3.36
3043 6135 6.030548 TGGGAACATATTTTGAATTTCGCA 57.969 33.333 0.00 0.00 34.63 5.10
3064 6157 7.151308 TCGCAAAATTACTGGAATTTGTGAAT 58.849 30.769 11.18 0.00 45.21 2.57
3137 6245 9.923143 AGGAAATAAAATAAAGGGAAACGAAAG 57.077 29.630 0.00 0.00 0.00 2.62
3140 6248 5.477607 AAAATAAAGGGAAACGAAAGGGG 57.522 39.130 0.00 0.00 0.00 4.79
3145 6253 1.203013 AGGGAAACGAAAGGGGGAAAG 60.203 52.381 0.00 0.00 0.00 2.62
3195 6303 4.130255 CCTTCTGGGAGGTTCCGA 57.870 61.111 0.00 0.00 37.43 4.55
3196 6304 2.372852 CCTTCTGGGAGGTTCCGAA 58.627 57.895 0.00 0.00 37.43 4.30
3197 6305 0.690762 CCTTCTGGGAGGTTCCGAAA 59.309 55.000 0.00 0.00 37.43 3.46
3198 6306 1.073284 CCTTCTGGGAGGTTCCGAAAA 59.927 52.381 0.00 0.00 37.43 2.29
3199 6307 2.290960 CCTTCTGGGAGGTTCCGAAAAT 60.291 50.000 0.00 0.00 37.43 1.82
3200 6308 3.054655 CCTTCTGGGAGGTTCCGAAAATA 60.055 47.826 0.00 0.00 37.43 1.40
3201 6309 3.906720 TCTGGGAGGTTCCGAAAATAG 57.093 47.619 0.00 0.00 37.43 1.73
3202 6310 3.446968 TCTGGGAGGTTCCGAAAATAGA 58.553 45.455 0.00 0.00 37.43 1.98
3203 6311 4.037927 TCTGGGAGGTTCCGAAAATAGAT 58.962 43.478 0.00 0.00 37.43 1.98
3204 6312 5.213519 TCTGGGAGGTTCCGAAAATAGATA 58.786 41.667 0.00 0.00 37.43 1.98
3205 6313 5.664006 TCTGGGAGGTTCCGAAAATAGATAA 59.336 40.000 0.00 0.00 37.43 1.75
3206 6314 6.157297 TCTGGGAGGTTCCGAAAATAGATAAA 59.843 38.462 0.00 0.00 37.43 1.40
3207 6315 6.723339 TGGGAGGTTCCGAAAATAGATAAAA 58.277 36.000 0.00 0.00 37.43 1.52
3208 6316 6.600427 TGGGAGGTTCCGAAAATAGATAAAAC 59.400 38.462 0.00 0.00 37.43 2.43
3209 6317 6.039047 GGGAGGTTCCGAAAATAGATAAAACC 59.961 42.308 0.00 0.00 37.43 3.27
3210 6318 6.600427 GGAGGTTCCGAAAATAGATAAAACCA 59.400 38.462 0.00 0.00 37.87 3.67
3211 6319 7.201705 GGAGGTTCCGAAAATAGATAAAACCAG 60.202 40.741 0.00 0.00 37.87 4.00
3212 6320 7.399634 AGGTTCCGAAAATAGATAAAACCAGA 58.600 34.615 0.00 0.00 37.87 3.86
3213 6321 7.553044 AGGTTCCGAAAATAGATAAAACCAGAG 59.447 37.037 0.00 0.00 37.87 3.35
3214 6322 7.551617 GGTTCCGAAAATAGATAAAACCAGAGA 59.448 37.037 0.00 0.00 35.95 3.10
3215 6323 9.110502 GTTCCGAAAATAGATAAAACCAGAGAT 57.889 33.333 0.00 0.00 0.00 2.75
3216 6324 8.662781 TCCGAAAATAGATAAAACCAGAGATG 57.337 34.615 0.00 0.00 0.00 2.90
3217 6325 8.482943 TCCGAAAATAGATAAAACCAGAGATGA 58.517 33.333 0.00 0.00 0.00 2.92
3218 6326 9.109393 CCGAAAATAGATAAAACCAGAGATGAA 57.891 33.333 0.00 0.00 0.00 2.57
3219 6327 9.922305 CGAAAATAGATAAAACCAGAGATGAAC 57.078 33.333 0.00 0.00 0.00 3.18
3226 6334 8.954350 AGATAAAACCAGAGATGAACATTCTTG 58.046 33.333 0.00 0.00 0.00 3.02
3227 6335 8.868522 ATAAAACCAGAGATGAACATTCTTGA 57.131 30.769 0.00 0.00 0.00 3.02
3228 6336 7.587037 AAAACCAGAGATGAACATTCTTGAA 57.413 32.000 0.00 0.00 0.00 2.69
3229 6337 6.814506 AACCAGAGATGAACATTCTTGAAG 57.185 37.500 0.00 0.00 0.00 3.02
3230 6338 5.251764 ACCAGAGATGAACATTCTTGAAGG 58.748 41.667 0.00 0.00 0.00 3.46
3231 6339 5.222007 ACCAGAGATGAACATTCTTGAAGGT 60.222 40.000 0.00 0.00 0.00 3.50
3232 6340 5.709164 CCAGAGATGAACATTCTTGAAGGTT 59.291 40.000 12.26 12.26 0.00 3.50
3233 6341 6.128063 CCAGAGATGAACATTCTTGAAGGTTC 60.128 42.308 24.78 24.78 39.93 3.62
3234 6342 5.942826 AGAGATGAACATTCTTGAAGGTTCC 59.057 40.000 26.92 17.58 39.02 3.62
3235 6343 5.885465 AGATGAACATTCTTGAAGGTTCCT 58.115 37.500 26.92 21.12 39.02 3.36
3236 6344 7.020827 AGATGAACATTCTTGAAGGTTCCTA 57.979 36.000 26.92 16.19 39.02 2.94
3237 6345 7.461749 AGATGAACATTCTTGAAGGTTCCTAA 58.538 34.615 26.92 15.66 39.02 2.69
3238 6346 7.944554 AGATGAACATTCTTGAAGGTTCCTAAA 59.055 33.333 26.92 15.40 39.02 1.85
3239 6347 7.889873 TGAACATTCTTGAAGGTTCCTAAAA 57.110 32.000 26.92 13.08 39.02 1.52
3240 6348 7.712797 TGAACATTCTTGAAGGTTCCTAAAAC 58.287 34.615 26.92 10.63 39.02 2.43
3241 6349 6.650427 ACATTCTTGAAGGTTCCTAAAACC 57.350 37.500 0.00 0.00 40.58 3.27
3242 6350 5.240844 ACATTCTTGAAGGTTCCTAAAACCG 59.759 40.000 1.52 0.00 44.82 4.44
3243 6351 4.693042 TCTTGAAGGTTCCTAAAACCGA 57.307 40.909 1.52 0.00 44.82 4.69
3244 6352 5.038651 TCTTGAAGGTTCCTAAAACCGAA 57.961 39.130 1.52 0.00 44.82 4.30
3245 6353 5.438833 TCTTGAAGGTTCCTAAAACCGAAA 58.561 37.500 1.52 0.00 44.82 3.46
3246 6354 5.529800 TCTTGAAGGTTCCTAAAACCGAAAG 59.470 40.000 1.52 7.01 44.82 2.62
3247 6355 4.784177 TGAAGGTTCCTAAAACCGAAAGT 58.216 39.130 1.52 0.00 44.82 2.66
3248 6356 5.927819 TGAAGGTTCCTAAAACCGAAAGTA 58.072 37.500 1.52 0.00 44.82 2.24
3249 6357 6.355747 TGAAGGTTCCTAAAACCGAAAGTAA 58.644 36.000 1.52 0.00 44.82 2.24
3250 6358 6.260714 TGAAGGTTCCTAAAACCGAAAGTAAC 59.739 38.462 1.52 0.00 44.82 2.50
3251 6359 5.683681 AGGTTCCTAAAACCGAAAGTAACA 58.316 37.500 1.52 0.00 44.82 2.41
3252 6360 6.121590 AGGTTCCTAAAACCGAAAGTAACAA 58.878 36.000 1.52 0.00 44.82 2.83
3253 6361 6.602803 AGGTTCCTAAAACCGAAAGTAACAAA 59.397 34.615 1.52 0.00 44.82 2.83
3254 6362 7.286087 AGGTTCCTAAAACCGAAAGTAACAAAT 59.714 33.333 1.52 0.00 44.82 2.32
3255 6363 7.592533 GGTTCCTAAAACCGAAAGTAACAAATC 59.407 37.037 0.00 0.00 0.00 2.17
3256 6364 7.804843 TCCTAAAACCGAAAGTAACAAATCA 57.195 32.000 0.00 0.00 0.00 2.57
3257 6365 7.641760 TCCTAAAACCGAAAGTAACAAATCAC 58.358 34.615 0.00 0.00 0.00 3.06
3258 6366 7.282675 TCCTAAAACCGAAAGTAACAAATCACA 59.717 33.333 0.00 0.00 0.00 3.58
3259 6367 8.079809 CCTAAAACCGAAAGTAACAAATCACAT 58.920 33.333 0.00 0.00 0.00 3.21
3262 6370 8.791355 AAACCGAAAGTAACAAATCACATAAC 57.209 30.769 0.00 0.00 0.00 1.89
3263 6371 7.739498 ACCGAAAGTAACAAATCACATAACT 57.261 32.000 0.00 0.00 0.00 2.24
3264 6372 8.836268 ACCGAAAGTAACAAATCACATAACTA 57.164 30.769 0.00 0.00 0.00 2.24
3265 6373 8.932791 ACCGAAAGTAACAAATCACATAACTAG 58.067 33.333 0.00 0.00 0.00 2.57
3266 6374 8.388103 CCGAAAGTAACAAATCACATAACTAGG 58.612 37.037 0.00 0.00 0.00 3.02
3267 6375 8.932791 CGAAAGTAACAAATCACATAACTAGGT 58.067 33.333 0.00 0.00 0.00 3.08
3269 6377 8.475331 AAGTAACAAATCACATAACTAGGTCG 57.525 34.615 0.00 0.00 0.00 4.79
3270 6378 7.039882 AGTAACAAATCACATAACTAGGTCGG 58.960 38.462 0.00 0.00 0.00 4.79
3271 6379 5.416271 ACAAATCACATAACTAGGTCGGT 57.584 39.130 0.00 0.00 0.00 4.69
3272 6380 5.416947 ACAAATCACATAACTAGGTCGGTC 58.583 41.667 0.00 0.00 0.00 4.79
3273 6381 5.046878 ACAAATCACATAACTAGGTCGGTCA 60.047 40.000 0.00 0.00 0.00 4.02
3274 6382 5.670792 AATCACATAACTAGGTCGGTCAA 57.329 39.130 0.00 0.00 0.00 3.18
3275 6383 4.713824 TCACATAACTAGGTCGGTCAAG 57.286 45.455 0.00 0.00 0.00 3.02
3276 6384 4.084287 TCACATAACTAGGTCGGTCAAGT 58.916 43.478 0.00 0.00 0.00 3.16
3277 6385 4.082408 TCACATAACTAGGTCGGTCAAGTG 60.082 45.833 0.00 0.00 0.00 3.16
3278 6386 3.187700 CATAACTAGGTCGGTCAAGTGC 58.812 50.000 0.00 0.00 0.00 4.40
3279 6387 1.045407 AACTAGGTCGGTCAAGTGCA 58.955 50.000 0.00 0.00 0.00 4.57
3280 6388 0.317479 ACTAGGTCGGTCAAGTGCAC 59.683 55.000 9.40 9.40 0.00 4.57
3281 6389 0.603569 CTAGGTCGGTCAAGTGCACT 59.396 55.000 15.25 15.25 0.00 4.40
3282 6390 1.816835 CTAGGTCGGTCAAGTGCACTA 59.183 52.381 22.01 1.56 0.00 2.74
3283 6391 0.603569 AGGTCGGTCAAGTGCACTAG 59.396 55.000 22.01 9.60 0.00 2.57
3284 6392 0.601558 GGTCGGTCAAGTGCACTAGA 59.398 55.000 22.01 11.79 0.00 2.43
3285 6393 1.204941 GGTCGGTCAAGTGCACTAGAT 59.795 52.381 22.01 0.65 0.00 1.98
3286 6394 2.531206 GTCGGTCAAGTGCACTAGATC 58.469 52.381 22.01 10.86 0.00 2.75
3287 6395 1.476891 TCGGTCAAGTGCACTAGATCC 59.523 52.381 22.01 17.94 0.00 3.36
3288 6396 1.471676 CGGTCAAGTGCACTAGATCCC 60.472 57.143 22.01 14.32 0.00 3.85
3289 6397 1.471676 GGTCAAGTGCACTAGATCCCG 60.472 57.143 22.01 3.15 0.00 5.14
3290 6398 0.175760 TCAAGTGCACTAGATCCCGC 59.824 55.000 22.01 0.00 0.00 6.13
3291 6399 0.176680 CAAGTGCACTAGATCCCGCT 59.823 55.000 22.01 0.00 0.00 5.52
3292 6400 0.461961 AAGTGCACTAGATCCCGCTC 59.538 55.000 22.01 0.00 0.00 5.03
3293 6401 1.299468 GTGCACTAGATCCCGCTCG 60.299 63.158 10.32 0.00 0.00 5.03
3294 6402 1.453197 TGCACTAGATCCCGCTCGA 60.453 57.895 0.00 0.00 0.00 4.04
3295 6403 0.823769 TGCACTAGATCCCGCTCGAT 60.824 55.000 0.00 0.00 0.00 3.59
3296 6404 0.315568 GCACTAGATCCCGCTCGATT 59.684 55.000 0.00 0.00 0.00 3.34
3297 6405 1.667467 GCACTAGATCCCGCTCGATTC 60.667 57.143 0.00 0.00 0.00 2.52
3298 6406 1.068194 CACTAGATCCCGCTCGATTCC 60.068 57.143 0.00 0.00 0.00 3.01
3299 6407 0.528470 CTAGATCCCGCTCGATTCCC 59.472 60.000 0.00 0.00 0.00 3.97
3300 6408 1.241990 TAGATCCCGCTCGATTCCCG 61.242 60.000 0.00 0.00 40.25 5.14
3301 6409 2.838225 ATCCCGCTCGATTCCCGT 60.838 61.111 0.00 0.00 39.75 5.28
3302 6410 3.151958 ATCCCGCTCGATTCCCGTG 62.152 63.158 0.00 0.00 39.75 4.94
3306 6414 2.813908 GCTCGATTCCCGTGCGTT 60.814 61.111 0.00 0.00 45.72 4.84
3307 6415 2.388232 GCTCGATTCCCGTGCGTTT 61.388 57.895 0.00 0.00 45.72 3.60
3308 6416 1.419922 CTCGATTCCCGTGCGTTTG 59.580 57.895 0.00 0.00 39.75 2.93
3309 6417 2.202298 CGATTCCCGTGCGTTTGC 60.202 61.111 0.00 0.00 43.20 3.68
3310 6418 2.677003 CGATTCCCGTGCGTTTGCT 61.677 57.895 0.00 0.00 43.34 3.91
3311 6419 1.134694 GATTCCCGTGCGTTTGCTC 59.865 57.895 0.00 0.00 43.34 4.26
3319 6427 2.806288 GTGCGTTTGCTCGTCATTAT 57.194 45.000 0.00 0.00 43.34 1.28
3320 6428 2.430956 GTGCGTTTGCTCGTCATTATG 58.569 47.619 0.00 0.00 43.34 1.90
3321 6429 2.093625 GTGCGTTTGCTCGTCATTATGA 59.906 45.455 0.00 0.00 43.34 2.15
3322 6430 2.739379 TGCGTTTGCTCGTCATTATGAA 59.261 40.909 0.00 0.00 43.34 2.57
3323 6431 3.373748 TGCGTTTGCTCGTCATTATGAAT 59.626 39.130 0.00 0.00 43.34 2.57
3324 6432 4.142708 TGCGTTTGCTCGTCATTATGAATT 60.143 37.500 0.00 0.00 43.34 2.17
3325 6433 4.793216 GCGTTTGCTCGTCATTATGAATTT 59.207 37.500 0.00 0.00 38.39 1.82
3326 6434 5.053025 GCGTTTGCTCGTCATTATGAATTTC 60.053 40.000 0.00 0.00 38.39 2.17
3327 6435 6.020984 CGTTTGCTCGTCATTATGAATTTCA 58.979 36.000 0.75 0.75 0.00 2.69
3328 6436 6.193410 CGTTTGCTCGTCATTATGAATTTCAG 59.807 38.462 5.21 0.00 0.00 3.02
3329 6437 6.983474 TTGCTCGTCATTATGAATTTCAGA 57.017 33.333 5.21 0.00 0.00 3.27
3330 6438 6.983474 TGCTCGTCATTATGAATTTCAGAA 57.017 33.333 8.76 8.76 31.69 3.02
3331 6439 7.376435 TGCTCGTCATTATGAATTTCAGAAA 57.624 32.000 10.24 0.00 30.86 2.52
3332 6440 7.988737 TGCTCGTCATTATGAATTTCAGAAAT 58.011 30.769 10.24 2.20 30.86 2.17
3333 6441 9.108284 TGCTCGTCATTATGAATTTCAGAAATA 57.892 29.630 8.88 0.00 30.86 1.40
3334 6442 9.374960 GCTCGTCATTATGAATTTCAGAAATAC 57.625 33.333 8.88 10.02 30.86 1.89
3335 6443 9.869844 CTCGTCATTATGAATTTCAGAAATACC 57.130 33.333 8.88 5.26 30.86 2.73
3336 6444 9.389755 TCGTCATTATGAATTTCAGAAATACCA 57.610 29.630 8.88 10.30 30.86 3.25
3337 6445 9.438291 CGTCATTATGAATTTCAGAAATACCAC 57.562 33.333 8.88 2.91 30.86 4.16
3338 6446 9.438291 GTCATTATGAATTTCAGAAATACCACG 57.562 33.333 8.88 2.21 30.86 4.94
3339 6447 9.389755 TCATTATGAATTTCAGAAATACCACGA 57.610 29.630 8.88 4.10 30.86 4.35
3340 6448 9.438291 CATTATGAATTTCAGAAATACCACGAC 57.562 33.333 8.88 0.00 30.86 4.34
3341 6449 5.873179 TGAATTTCAGAAATACCACGACC 57.127 39.130 8.88 0.00 0.00 4.79
3342 6450 4.390603 TGAATTTCAGAAATACCACGACCG 59.609 41.667 8.88 0.00 0.00 4.79
3343 6451 3.389925 TTTCAGAAATACCACGACCGT 57.610 42.857 0.00 0.00 0.00 4.83
3344 6452 2.642139 TCAGAAATACCACGACCGTC 57.358 50.000 0.00 0.00 0.00 4.79
3345 6453 1.203052 TCAGAAATACCACGACCGTCC 59.797 52.381 0.00 0.00 0.00 4.79
3346 6454 1.067425 CAGAAATACCACGACCGTCCA 60.067 52.381 0.00 0.00 0.00 4.02
3347 6455 1.619827 AGAAATACCACGACCGTCCAA 59.380 47.619 0.00 0.00 0.00 3.53
3348 6456 2.235402 AGAAATACCACGACCGTCCAAT 59.765 45.455 0.00 0.00 0.00 3.16
3349 6457 3.448301 AGAAATACCACGACCGTCCAATA 59.552 43.478 0.00 0.00 0.00 1.90
3350 6458 3.447918 AATACCACGACCGTCCAATAG 57.552 47.619 0.00 0.00 0.00 1.73
3351 6459 1.105457 TACCACGACCGTCCAATAGG 58.895 55.000 0.00 0.00 0.00 2.57
3352 6460 1.143183 CCACGACCGTCCAATAGGG 59.857 63.158 0.00 0.00 39.17 3.53
3353 6461 1.143183 CACGACCGTCCAATAGGGG 59.857 63.158 0.00 0.00 37.45 4.79
3354 6462 1.305549 ACGACCGTCCAATAGGGGT 60.306 57.895 0.00 0.00 37.45 4.95
3355 6463 0.906282 ACGACCGTCCAATAGGGGTT 60.906 55.000 0.00 0.00 37.45 4.11
3356 6464 0.251073 CGACCGTCCAATAGGGGTTT 59.749 55.000 0.00 0.00 37.45 3.27
3357 6465 1.741394 CGACCGTCCAATAGGGGTTTC 60.741 57.143 0.00 0.00 37.45 2.78
3358 6466 0.622136 ACCGTCCAATAGGGGTTTCC 59.378 55.000 0.00 0.00 37.45 3.13
3377 6485 6.557633 GGTTTCCCTCTAGTTTATCCCTCATA 59.442 42.308 0.00 0.00 0.00 2.15
3380 6488 8.814448 TTCCCTCTAGTTTATCCCTCATATTT 57.186 34.615 0.00 0.00 0.00 1.40
3385 6493 8.045720 TCTAGTTTATCCCTCATATTTTGGCT 57.954 34.615 0.00 0.00 0.00 4.75
3389 6497 3.017048 TCCCTCATATTTTGGCTGGTG 57.983 47.619 0.00 0.00 0.00 4.17
3447 6556 9.899226 TTTTAAATTTGTTTGGAAAAACAGGTG 57.101 25.926 0.00 0.00 42.79 4.00
3458 6567 5.163499 TGGAAAAACAGGTGTGTGGTATTTC 60.163 40.000 0.00 0.00 36.84 2.17
3463 6572 4.787551 ACAGGTGTGTGGTATTTCTGAAA 58.212 39.130 5.15 5.15 34.75 2.69
3469 6578 4.457603 TGTGTGGTATTTCTGAAATTCGGG 59.542 41.667 19.68 0.00 32.38 5.14
3492 6601 7.448469 CGGGGGATGATTGTTTAGATATTTTCT 59.552 37.037 0.00 0.00 38.57 2.52
3514 6623 7.865706 TCTGCTTTAGAAAAATAAGCTAGGG 57.134 36.000 0.00 0.00 43.51 3.53
3524 6633 8.577296 AGAAAAATAAGCTAGGGAAAACAGTTC 58.423 33.333 0.00 0.00 0.00 3.01
3527 6636 3.425162 AGCTAGGGAAAACAGTTCAGG 57.575 47.619 0.00 0.00 0.00 3.86
3547 6656 7.004555 TCAGGTGTTTCATTCTAGCTAAAGA 57.995 36.000 0.00 0.00 0.00 2.52
3548 6657 7.099764 TCAGGTGTTTCATTCTAGCTAAAGAG 58.900 38.462 0.00 0.00 0.00 2.85
3551 6660 8.594550 AGGTGTTTCATTCTAGCTAAAGAGTTA 58.405 33.333 0.00 0.00 0.00 2.24
3552 6661 9.216117 GGTGTTTCATTCTAGCTAAAGAGTTAA 57.784 33.333 0.00 0.00 0.00 2.01
3554 6663 9.436957 TGTTTCATTCTAGCTAAAGAGTTAAGG 57.563 33.333 0.00 0.00 0.00 2.69
3555 6664 8.884726 GTTTCATTCTAGCTAAAGAGTTAAGGG 58.115 37.037 0.00 0.00 0.00 3.95
3556 6665 7.125792 TCATTCTAGCTAAAGAGTTAAGGGG 57.874 40.000 0.00 0.00 0.00 4.79
3580 6690 7.012138 GGGGGATCTAAAGACGTTTTAATCTTC 59.988 40.741 0.00 0.00 34.01 2.87
3581 6691 7.012138 GGGGATCTAAAGACGTTTTAATCTTCC 59.988 40.741 0.00 0.00 34.01 3.46
3582 6692 7.551617 GGGATCTAAAGACGTTTTAATCTTCCA 59.448 37.037 0.00 0.00 34.01 3.53
3591 6701 6.170506 ACGTTTTAATCTTCCAGCATAGACA 58.829 36.000 0.00 0.00 0.00 3.41
3598 6708 0.826715 TCCAGCATAGACAGACAGGC 59.173 55.000 0.00 0.00 0.00 4.85
3600 6710 1.649664 CAGCATAGACAGACAGGCAC 58.350 55.000 0.00 0.00 0.00 5.01
3606 6716 0.249489 AGACAGACAGGCACGTTGAC 60.249 55.000 0.00 0.00 0.00 3.18
3609 6719 4.059459 GACAGGCACGTTGACGCG 62.059 66.667 3.53 3.53 44.43 6.01
3619 6729 0.633733 CGTTGACGCGTGATGTAGAC 59.366 55.000 20.70 0.90 0.00 2.59
3622 6732 1.908065 TGACGCGTGATGTAGACATG 58.092 50.000 20.70 0.00 36.57 3.21
3626 6736 1.588404 CGCGTGATGTAGACATGTTCC 59.412 52.381 0.00 0.00 36.57 3.62
3629 6739 3.623060 GCGTGATGTAGACATGTTCCAAT 59.377 43.478 0.00 0.00 36.57 3.16
3634 6744 8.397906 CGTGATGTAGACATGTTCCAATAAAAT 58.602 33.333 0.00 0.00 36.57 1.82
3656 6766 2.095059 ACTTTTGTGAATCGGCATGAGC 60.095 45.455 0.00 0.00 41.10 4.26
3657 6767 1.532523 TTTGTGAATCGGCATGAGCA 58.467 45.000 0.00 0.00 44.61 4.26
3689 6800 5.885352 TGGTTCAATTGTGGTATGATCGAAT 59.115 36.000 5.13 0.00 0.00 3.34
3690 6801 6.183360 TGGTTCAATTGTGGTATGATCGAATG 60.183 38.462 5.13 0.00 0.00 2.67
3704 6815 1.679153 TCGAATGCGCTCATACCACTA 59.321 47.619 9.73 0.00 37.46 2.74
3708 6819 1.470051 TGCGCTCATACCACTACTCA 58.530 50.000 9.73 0.00 0.00 3.41
3722 6833 5.992217 ACCACTACTCATCTTCTGTTTTGTC 59.008 40.000 0.00 0.00 0.00 3.18
3765 6876 1.732259 CATCGGTACAAGTGGACAAGC 59.268 52.381 0.00 0.00 0.00 4.01
3776 6887 2.171940 GACAAGCTTGCAGACGCG 59.828 61.111 26.27 3.53 42.97 6.01
3780 6891 4.669842 AGCTTGCAGACGCGCTCA 62.670 61.111 5.73 2.57 42.97 4.26
3795 6906 0.601311 GCTCATATGAGTGCCCGTCC 60.601 60.000 28.92 10.09 43.85 4.79
3802 6913 1.450312 GAGTGCCCGTCCATCCTTG 60.450 63.158 0.00 0.00 0.00 3.61
3813 6924 3.063997 CGTCCATCCTTGTGATAACTTGC 59.936 47.826 0.00 0.00 30.56 4.01
3814 6925 4.265073 GTCCATCCTTGTGATAACTTGCT 58.735 43.478 0.00 0.00 30.56 3.91
3815 6926 5.428253 GTCCATCCTTGTGATAACTTGCTA 58.572 41.667 0.00 0.00 30.56 3.49
3816 6927 6.058183 GTCCATCCTTGTGATAACTTGCTAT 58.942 40.000 0.00 0.00 30.56 2.97
3817 6928 6.017605 GTCCATCCTTGTGATAACTTGCTATG 60.018 42.308 0.00 0.00 30.56 2.23
3818 6929 5.240183 CCATCCTTGTGATAACTTGCTATGG 59.760 44.000 0.00 0.00 30.56 2.74
3819 6930 5.435686 TCCTTGTGATAACTTGCTATGGT 57.564 39.130 0.00 0.00 0.00 3.55
3820 6931 5.185454 TCCTTGTGATAACTTGCTATGGTG 58.815 41.667 0.00 0.00 0.00 4.17
3821 6932 4.201950 CCTTGTGATAACTTGCTATGGTGC 60.202 45.833 0.00 0.00 0.00 5.01
3822 6933 3.949132 TGTGATAACTTGCTATGGTGCA 58.051 40.909 0.00 0.00 41.65 4.57
3824 6935 4.155826 TGTGATAACTTGCTATGGTGCAAC 59.844 41.667 0.00 0.00 46.43 4.17
3835 6946 3.443588 GTGCAACCGAGGGCTTTT 58.556 55.556 0.00 0.00 0.00 2.27
3836 6947 1.007387 GTGCAACCGAGGGCTTTTG 60.007 57.895 0.00 0.00 0.00 2.44
3837 6948 1.454847 TGCAACCGAGGGCTTTTGT 60.455 52.632 0.00 0.00 0.00 2.83
3838 6949 0.179015 TGCAACCGAGGGCTTTTGTA 60.179 50.000 0.00 0.00 0.00 2.41
3839 6950 1.173913 GCAACCGAGGGCTTTTGTAT 58.826 50.000 0.00 0.00 0.00 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.816087 GAGCCTTTGCAGAGAACATTCA 59.184 45.455 5.68 0.00 41.13 2.57
27 28 2.162208 TCTTAAATGCGAGCCTTTGCAG 59.838 45.455 8.27 5.11 46.56 4.41
203 211 4.452455 GGTCGAGAAAACATGAGTTCACAT 59.548 41.667 0.00 0.00 36.84 3.21
223 231 6.995364 AGTTGGTCTAGTAGAAGAAAAGGTC 58.005 40.000 0.17 0.00 0.00 3.85
239 247 5.342866 AGACATAGGAACCTAAGTTGGTCT 58.657 41.667 9.58 11.18 39.83 3.85
272 280 6.115446 TCTACATGGCAGTAGGATGAAAAAG 58.885 40.000 17.96 1.34 41.39 2.27
335 916 9.057089 GTGTATATGTAAAGATTCCAAGAAGGG 57.943 37.037 0.00 0.00 38.24 3.95
387 968 1.280710 ACTGTCACCCACACACTTTGA 59.719 47.619 0.00 0.00 0.00 2.69
476 1057 5.604231 TCAACTATGCCTATCTTCCACTCAT 59.396 40.000 0.00 0.00 0.00 2.90
518 1099 2.683768 AGTTAGAGGATCCGGCTTCAT 58.316 47.619 14.22 0.00 33.66 2.57
566 1148 2.782192 CTCCGTTCTATGTAAAGACGCG 59.218 50.000 3.53 3.53 0.00 6.01
595 1177 3.679389 AGAACGGTGCAATCTTTCTGAT 58.321 40.909 8.57 0.00 36.89 2.90
600 1182 5.240623 TGATTTGTAGAACGGTGCAATCTTT 59.759 36.000 0.00 0.00 0.00 2.52
621 1203 9.249457 CGTGAACAGTAATACATCTACAATGAT 57.751 33.333 0.00 0.00 0.00 2.45
711 1293 1.780919 ACAGCACCCTAACTTCCCTTT 59.219 47.619 0.00 0.00 0.00 3.11
744 1326 7.343316 TGAGATCTTCTAACTTTAGGAGGGAAG 59.657 40.741 0.00 0.00 37.06 3.46
757 1339 9.995003 ACATATTCTGGATTGAGATCTTCTAAC 57.005 33.333 0.00 0.00 32.66 2.34
761 1343 8.881743 GCATACATATTCTGGATTGAGATCTTC 58.118 37.037 0.00 0.00 32.66 2.87
762 1344 7.828223 GGCATACATATTCTGGATTGAGATCTT 59.172 37.037 0.00 0.00 32.66 2.40
763 1345 7.037802 TGGCATACATATTCTGGATTGAGATCT 60.038 37.037 0.00 0.00 32.66 2.75
764 1346 7.065563 GTGGCATACATATTCTGGATTGAGATC 59.934 40.741 0.00 0.00 0.00 2.75
765 1347 6.883217 GTGGCATACATATTCTGGATTGAGAT 59.117 38.462 0.00 0.00 0.00 2.75
780 1362 7.723616 TGCTAATTGGTATTAAGTGGCATACAT 59.276 33.333 0.00 0.00 37.24 2.29
782 1364 7.504924 TGCTAATTGGTATTAAGTGGCATAC 57.495 36.000 0.00 0.00 37.24 2.39
839 1480 0.958091 TGTGTTGAAATGGGCTTCGG 59.042 50.000 0.00 0.00 0.00 4.30
921 1660 1.758514 GATCTGAGGGGAGCGTGGA 60.759 63.158 0.00 0.00 0.00 4.02
1075 1833 3.851976 ACTACTCGAGATGTTGTGGTC 57.148 47.619 21.68 0.00 0.00 4.02
1320 2089 1.004979 AGTAACAGAGGCTCGAGGAGT 59.995 52.381 15.58 1.50 31.39 3.85
1383 2160 2.486982 CAGCACCTGAGAATTCAACCAG 59.513 50.000 8.44 11.10 32.44 4.00
1431 2215 3.531538 GATGATGCGGGTCTTCTTGTTA 58.468 45.455 0.00 0.00 0.00 2.41
1619 2403 1.456705 TTTGGGGACTTGGTGGTGC 60.457 57.895 0.00 0.00 0.00 5.01
1635 2419 1.671379 GGCGGCGACCTTCTTCTTT 60.671 57.895 12.98 0.00 0.00 2.52
1651 2438 2.187163 GGACGGCTACTCCTTGGC 59.813 66.667 0.00 0.00 0.00 4.52
1751 2580 1.989966 GCTCGACGAATCTGACGGGA 61.990 60.000 0.00 0.00 34.93 5.14
1807 2645 7.092137 AGATTGAAATGATTGCATCTTTCGA 57.908 32.000 0.00 0.00 33.27 3.71
1854 2781 2.916716 CAACGGAAAATTTCGGATGCTG 59.083 45.455 18.11 7.37 34.48 4.41
1872 2799 8.816144 GTTCTTCATAGATTCAGACAGATCAAC 58.184 37.037 0.00 0.00 0.00 3.18
1912 2945 6.432162 ACCATCATCAATTTATAAGCTGCGAT 59.568 34.615 0.00 0.00 0.00 4.58
1945 2982 6.016527 TCTGATGCATCTTGCTTATCCAATTC 60.017 38.462 26.32 0.00 45.31 2.17
1965 3002 3.181451 TGTTTGACTGCAGGACTTCTGAT 60.181 43.478 19.93 0.00 46.18 2.90
2027 3064 3.645884 TCAACTACAGAGGTTACGTTGC 58.354 45.455 0.00 0.00 32.88 4.17
2031 3068 3.502920 CAGCTCAACTACAGAGGTTACG 58.497 50.000 0.00 0.00 41.51 3.18
2064 3105 5.751680 CATGTAGTCTGTGGTTTGTCAAAG 58.248 41.667 0.00 0.00 0.00 2.77
2074 3115 2.099756 TCAGATCGCATGTAGTCTGTGG 59.900 50.000 17.11 0.69 39.22 4.17
2075 3116 3.427161 TCAGATCGCATGTAGTCTGTG 57.573 47.619 17.11 5.48 39.22 3.66
2077 3118 4.039151 ACTTCAGATCGCATGTAGTCTG 57.961 45.455 13.68 13.68 39.47 3.51
2078 3119 4.677584 GAACTTCAGATCGCATGTAGTCT 58.322 43.478 0.00 0.00 29.29 3.24
2100 3169 7.681903 GTTTGTAACCTACATCAAACTATCCG 58.318 38.462 10.88 0.00 43.21 4.18
2119 3191 3.491964 CGTTCTCAGGTCTGTGGTTTGTA 60.492 47.826 0.00 0.00 0.00 2.41
2206 3312 6.401153 CGGTGAATCTTGTTCTACTTGCTTAC 60.401 42.308 0.00 0.00 0.00 2.34
2207 3313 5.637810 CGGTGAATCTTGTTCTACTTGCTTA 59.362 40.000 0.00 0.00 0.00 3.09
2208 3314 4.452455 CGGTGAATCTTGTTCTACTTGCTT 59.548 41.667 0.00 0.00 0.00 3.91
2209 3315 3.997021 CGGTGAATCTTGTTCTACTTGCT 59.003 43.478 0.00 0.00 0.00 3.91
2210 3316 3.125316 CCGGTGAATCTTGTTCTACTTGC 59.875 47.826 0.00 0.00 0.00 4.01
2211 3317 4.566004 TCCGGTGAATCTTGTTCTACTTG 58.434 43.478 0.00 0.00 0.00 3.16
2212 3318 4.884668 TCCGGTGAATCTTGTTCTACTT 57.115 40.909 0.00 0.00 0.00 2.24
2216 3322 2.749621 GCATTCCGGTGAATCTTGTTCT 59.250 45.455 0.00 0.00 39.20 3.01
2217 3323 2.159379 GGCATTCCGGTGAATCTTGTTC 60.159 50.000 0.00 0.00 39.20 3.18
2218 3324 1.818674 GGCATTCCGGTGAATCTTGTT 59.181 47.619 0.00 0.00 39.20 2.83
2219 3325 1.004745 AGGCATTCCGGTGAATCTTGT 59.995 47.619 0.00 0.00 39.20 3.16
2221 3327 2.290896 TGAAGGCATTCCGGTGAATCTT 60.291 45.455 8.88 1.40 39.20 2.40
2222 3328 1.281867 TGAAGGCATTCCGGTGAATCT 59.718 47.619 8.88 0.00 39.20 2.40
2223 3329 1.750193 TGAAGGCATTCCGGTGAATC 58.250 50.000 8.88 0.00 39.20 2.52
2224 3330 2.214376 TTGAAGGCATTCCGGTGAAT 57.786 45.000 8.88 0.00 41.96 2.57
2225 3331 1.885887 CTTTGAAGGCATTCCGGTGAA 59.114 47.619 8.88 0.00 37.47 3.18
2226 3332 1.073125 TCTTTGAAGGCATTCCGGTGA 59.927 47.619 8.88 0.00 37.47 4.02
2227 3333 1.470098 CTCTTTGAAGGCATTCCGGTG 59.530 52.381 8.88 0.00 37.47 4.94
2228 3334 1.073923 ACTCTTTGAAGGCATTCCGGT 59.926 47.619 8.88 0.00 37.47 5.28
2229 3335 1.826385 ACTCTTTGAAGGCATTCCGG 58.174 50.000 8.88 0.00 37.47 5.14
2230 3336 4.455877 ACTTTACTCTTTGAAGGCATTCCG 59.544 41.667 8.88 0.00 37.47 4.30
2231 3337 5.966742 ACTTTACTCTTTGAAGGCATTCC 57.033 39.130 8.88 0.00 34.28 3.01
2232 3338 7.907214 TCTACTTTACTCTTTGAAGGCATTC 57.093 36.000 3.66 3.66 35.87 2.67
2233 3339 8.691661 TTTCTACTTTACTCTTTGAAGGCATT 57.308 30.769 0.00 0.00 0.00 3.56
2234 3340 8.691661 TTTTCTACTTTACTCTTTGAAGGCAT 57.308 30.769 0.00 0.00 0.00 4.40
2235 3341 8.514330 TTTTTCTACTTTACTCTTTGAAGGCA 57.486 30.769 0.00 0.00 0.00 4.75
2236 3342 9.399403 CATTTTTCTACTTTACTCTTTGAAGGC 57.601 33.333 0.00 0.00 0.00 4.35
2249 3355 6.544564 TCCGGTGAAGAACATTTTTCTACTTT 59.455 34.615 0.00 0.00 0.00 2.66
2250 3356 6.059484 TCCGGTGAAGAACATTTTTCTACTT 58.941 36.000 0.00 0.00 0.00 2.24
2271 3377 1.081892 CAGGAATCTTGTGCACTCCG 58.918 55.000 19.41 8.61 0.00 4.63
2316 3740 7.546250 TTCTTGCTTATTATTTTTCCCACCA 57.454 32.000 0.00 0.00 0.00 4.17
2369 3814 7.929785 CGGTATACCCACTCTACATTTAACATT 59.070 37.037 16.47 0.00 0.00 2.71
2371 3816 6.380846 ACGGTATACCCACTCTACATTTAACA 59.619 38.462 16.47 0.00 0.00 2.41
2380 3845 8.710749 AAAATGTATACGGTATACCCACTCTA 57.289 34.615 27.04 12.94 40.18 2.43
2440 3905 2.263077 GACATGAAGTCGCAGGTAGTG 58.737 52.381 0.00 0.00 37.53 2.74
2466 3931 9.529823 TGATAGTTCATATAAACTCGGATACCT 57.470 33.333 0.00 0.00 40.01 3.08
2469 3934 8.467598 GGCTGATAGTTCATATAAACTCGGATA 58.532 37.037 0.00 0.00 40.01 2.59
2557 4027 5.125417 TCCTCCAAAAATGTAGTATTGCAGC 59.875 40.000 0.00 0.00 0.00 5.25
2564 4034 7.324388 TCCTCTTTCCTCCAAAAATGTAGTA 57.676 36.000 0.00 0.00 0.00 1.82
2567 4038 6.369629 TGTTCCTCTTTCCTCCAAAAATGTA 58.630 36.000 0.00 0.00 0.00 2.29
2576 4048 4.398319 TCAATGTTGTTCCTCTTTCCTCC 58.602 43.478 0.00 0.00 0.00 4.30
2704 4185 9.426837 ACAATAATGTTCATGATTTGGAAACAG 57.573 29.630 0.00 0.00 38.05 3.16
2726 4209 7.630470 TTCAAAATTCGTTCGCAAATACAAT 57.370 28.000 0.00 0.00 0.00 2.71
2900 5819 8.391106 CCGGTTTCAAATTTTGTTCATGTTTTA 58.609 29.630 8.89 0.00 0.00 1.52
3004 6096 7.852971 ATGTTCCCATTTGCAAATATTTCTG 57.147 32.000 23.69 12.24 0.00 3.02
3016 6108 7.904461 GCGAAATTCAAAATATGTTCCCATTTG 59.096 33.333 0.00 0.00 32.29 2.32
3037 6129 6.980978 TCACAAATTCCAGTAATTTTGCGAAA 59.019 30.769 0.53 0.53 43.75 3.46
3117 6213 5.481122 CCCCCTTTCGTTTCCCTTTATTTTA 59.519 40.000 0.00 0.00 0.00 1.52
3124 6232 0.854908 TTCCCCCTTTCGTTTCCCTT 59.145 50.000 0.00 0.00 0.00 3.95
3126 6234 1.202964 TCTTTCCCCCTTTCGTTTCCC 60.203 52.381 0.00 0.00 0.00 3.97
3178 6286 0.690762 TTTCGGAACCTCCCAGAAGG 59.309 55.000 0.00 0.00 42.55 3.46
3179 6287 2.561478 TTTTCGGAACCTCCCAGAAG 57.439 50.000 0.00 0.00 31.13 2.85
3180 6288 3.841845 TCTATTTTCGGAACCTCCCAGAA 59.158 43.478 0.00 0.00 31.13 3.02
3181 6289 3.446968 TCTATTTTCGGAACCTCCCAGA 58.553 45.455 0.00 0.00 31.13 3.86
3182 6290 3.906720 TCTATTTTCGGAACCTCCCAG 57.093 47.619 0.00 0.00 31.13 4.45
3183 6291 5.961398 TTATCTATTTTCGGAACCTCCCA 57.039 39.130 0.00 0.00 31.13 4.37
3184 6292 6.039047 GGTTTTATCTATTTTCGGAACCTCCC 59.961 42.308 0.00 0.00 34.08 4.30
3185 6293 6.600427 TGGTTTTATCTATTTTCGGAACCTCC 59.400 38.462 0.00 0.00 36.96 4.30
3186 6294 7.551617 TCTGGTTTTATCTATTTTCGGAACCTC 59.448 37.037 0.00 0.00 36.96 3.85
3187 6295 7.399634 TCTGGTTTTATCTATTTTCGGAACCT 58.600 34.615 0.00 0.00 36.96 3.50
3188 6296 7.551617 TCTCTGGTTTTATCTATTTTCGGAACC 59.448 37.037 0.00 0.00 36.66 3.62
3189 6297 8.488651 TCTCTGGTTTTATCTATTTTCGGAAC 57.511 34.615 0.00 0.00 0.00 3.62
3190 6298 9.109393 CATCTCTGGTTTTATCTATTTTCGGAA 57.891 33.333 0.00 0.00 0.00 4.30
3191 6299 8.482943 TCATCTCTGGTTTTATCTATTTTCGGA 58.517 33.333 0.00 0.00 0.00 4.55
3192 6300 8.662781 TCATCTCTGGTTTTATCTATTTTCGG 57.337 34.615 0.00 0.00 0.00 4.30
3193 6301 9.922305 GTTCATCTCTGGTTTTATCTATTTTCG 57.078 33.333 0.00 0.00 0.00 3.46
3200 6308 8.954350 CAAGAATGTTCATCTCTGGTTTTATCT 58.046 33.333 0.00 0.00 0.00 1.98
3201 6309 8.950210 TCAAGAATGTTCATCTCTGGTTTTATC 58.050 33.333 0.00 0.00 0.00 1.75
3202 6310 8.868522 TCAAGAATGTTCATCTCTGGTTTTAT 57.131 30.769 0.00 0.00 0.00 1.40
3203 6311 8.690203 TTCAAGAATGTTCATCTCTGGTTTTA 57.310 30.769 0.00 0.00 0.00 1.52
3204 6312 7.255730 CCTTCAAGAATGTTCATCTCTGGTTTT 60.256 37.037 0.00 0.00 0.00 2.43
3205 6313 6.208204 CCTTCAAGAATGTTCATCTCTGGTTT 59.792 38.462 0.00 0.00 0.00 3.27
3206 6314 5.709164 CCTTCAAGAATGTTCATCTCTGGTT 59.291 40.000 0.00 0.00 0.00 3.67
3207 6315 5.222007 ACCTTCAAGAATGTTCATCTCTGGT 60.222 40.000 0.00 0.00 0.00 4.00
3208 6316 5.251764 ACCTTCAAGAATGTTCATCTCTGG 58.748 41.667 0.00 0.00 0.00 3.86
3209 6317 6.128063 GGAACCTTCAAGAATGTTCATCTCTG 60.128 42.308 23.10 0.00 43.26 3.35
3210 6318 5.942826 GGAACCTTCAAGAATGTTCATCTCT 59.057 40.000 23.10 0.00 43.26 3.10
3211 6319 5.942826 AGGAACCTTCAAGAATGTTCATCTC 59.057 40.000 23.10 11.92 43.26 2.75
3212 6320 5.885465 AGGAACCTTCAAGAATGTTCATCT 58.115 37.500 23.10 14.07 43.26 2.90
3213 6321 7.687941 TTAGGAACCTTCAAGAATGTTCATC 57.312 36.000 23.10 12.65 43.26 2.92
3214 6322 8.360390 GTTTTAGGAACCTTCAAGAATGTTCAT 58.640 33.333 23.10 20.35 43.26 2.57
3215 6323 7.201875 GGTTTTAGGAACCTTCAAGAATGTTCA 60.202 37.037 23.10 8.96 43.26 3.18
3216 6324 7.145985 GGTTTTAGGAACCTTCAAGAATGTTC 58.854 38.462 17.30 17.30 41.83 3.18
3217 6325 6.238925 CGGTTTTAGGAACCTTCAAGAATGTT 60.239 38.462 0.00 3.62 38.15 2.71
3218 6326 5.240844 CGGTTTTAGGAACCTTCAAGAATGT 59.759 40.000 0.00 0.00 38.15 2.71
3219 6327 5.472137 TCGGTTTTAGGAACCTTCAAGAATG 59.528 40.000 0.00 0.00 38.15 2.67
3220 6328 5.627135 TCGGTTTTAGGAACCTTCAAGAAT 58.373 37.500 0.00 0.00 38.15 2.40
3221 6329 5.038651 TCGGTTTTAGGAACCTTCAAGAA 57.961 39.130 0.00 0.00 38.15 2.52
3222 6330 4.693042 TCGGTTTTAGGAACCTTCAAGA 57.307 40.909 0.00 0.00 38.15 3.02
3223 6331 5.298527 ACTTTCGGTTTTAGGAACCTTCAAG 59.701 40.000 0.00 7.42 38.15 3.02
3224 6332 5.195185 ACTTTCGGTTTTAGGAACCTTCAA 58.805 37.500 0.00 0.00 38.15 2.69
3225 6333 4.784177 ACTTTCGGTTTTAGGAACCTTCA 58.216 39.130 0.00 0.00 38.15 3.02
3226 6334 6.260714 TGTTACTTTCGGTTTTAGGAACCTTC 59.739 38.462 0.00 0.00 38.15 3.46
3227 6335 6.121590 TGTTACTTTCGGTTTTAGGAACCTT 58.878 36.000 0.00 0.00 38.15 3.50
3228 6336 5.683681 TGTTACTTTCGGTTTTAGGAACCT 58.316 37.500 6.40 0.00 38.15 3.50
3229 6337 6.375945 TTGTTACTTTCGGTTTTAGGAACC 57.624 37.500 0.00 0.00 32.81 3.62
3230 6338 8.130469 TGATTTGTTACTTTCGGTTTTAGGAAC 58.870 33.333 0.00 0.00 34.09 3.62
3231 6339 8.130469 GTGATTTGTTACTTTCGGTTTTAGGAA 58.870 33.333 0.00 0.00 0.00 3.36
3232 6340 7.282675 TGTGATTTGTTACTTTCGGTTTTAGGA 59.717 33.333 0.00 0.00 0.00 2.94
3233 6341 7.419204 TGTGATTTGTTACTTTCGGTTTTAGG 58.581 34.615 0.00 0.00 0.00 2.69
3236 6344 9.240159 GTTATGTGATTTGTTACTTTCGGTTTT 57.760 29.630 0.00 0.00 0.00 2.43
3237 6345 8.626526 AGTTATGTGATTTGTTACTTTCGGTTT 58.373 29.630 0.00 0.00 0.00 3.27
3238 6346 8.161699 AGTTATGTGATTTGTTACTTTCGGTT 57.838 30.769 0.00 0.00 0.00 4.44
3239 6347 7.739498 AGTTATGTGATTTGTTACTTTCGGT 57.261 32.000 0.00 0.00 0.00 4.69
3240 6348 8.388103 CCTAGTTATGTGATTTGTTACTTTCGG 58.612 37.037 0.00 0.00 0.00 4.30
3241 6349 8.932791 ACCTAGTTATGTGATTTGTTACTTTCG 58.067 33.333 0.00 0.00 0.00 3.46
3243 6351 8.932791 CGACCTAGTTATGTGATTTGTTACTTT 58.067 33.333 0.00 0.00 0.00 2.66
3244 6352 7.548075 CCGACCTAGTTATGTGATTTGTTACTT 59.452 37.037 0.00 0.00 0.00 2.24
3245 6353 7.039882 CCGACCTAGTTATGTGATTTGTTACT 58.960 38.462 0.00 0.00 0.00 2.24
3246 6354 6.815142 ACCGACCTAGTTATGTGATTTGTTAC 59.185 38.462 0.00 0.00 0.00 2.50
3247 6355 6.938507 ACCGACCTAGTTATGTGATTTGTTA 58.061 36.000 0.00 0.00 0.00 2.41
3248 6356 5.801380 ACCGACCTAGTTATGTGATTTGTT 58.199 37.500 0.00 0.00 0.00 2.83
3249 6357 5.046878 TGACCGACCTAGTTATGTGATTTGT 60.047 40.000 0.00 0.00 0.00 2.83
3250 6358 5.416083 TGACCGACCTAGTTATGTGATTTG 58.584 41.667 0.00 0.00 0.00 2.32
3251 6359 5.670792 TGACCGACCTAGTTATGTGATTT 57.329 39.130 0.00 0.00 0.00 2.17
3252 6360 5.187186 ACTTGACCGACCTAGTTATGTGATT 59.813 40.000 0.00 0.00 0.00 2.57
3253 6361 4.710375 ACTTGACCGACCTAGTTATGTGAT 59.290 41.667 0.00 0.00 0.00 3.06
3254 6362 4.082408 CACTTGACCGACCTAGTTATGTGA 60.082 45.833 0.00 0.00 33.42 3.58
3255 6363 4.174009 CACTTGACCGACCTAGTTATGTG 58.826 47.826 0.00 0.00 0.00 3.21
3256 6364 3.368116 GCACTTGACCGACCTAGTTATGT 60.368 47.826 0.00 0.00 0.00 2.29
3257 6365 3.187700 GCACTTGACCGACCTAGTTATG 58.812 50.000 0.00 0.00 0.00 1.90
3258 6366 2.829720 TGCACTTGACCGACCTAGTTAT 59.170 45.455 0.00 0.00 0.00 1.89
3259 6367 2.029649 GTGCACTTGACCGACCTAGTTA 60.030 50.000 10.32 0.00 0.00 2.24
3260 6368 1.045407 TGCACTTGACCGACCTAGTT 58.955 50.000 0.00 0.00 0.00 2.24
3261 6369 0.317479 GTGCACTTGACCGACCTAGT 59.683 55.000 10.32 0.00 0.00 2.57
3262 6370 0.603569 AGTGCACTTGACCGACCTAG 59.396 55.000 15.25 0.00 0.00 3.02
3263 6371 1.816835 CTAGTGCACTTGACCGACCTA 59.183 52.381 27.06 1.01 0.00 3.08
3264 6372 0.603569 CTAGTGCACTTGACCGACCT 59.396 55.000 27.06 0.00 0.00 3.85
3265 6373 0.601558 TCTAGTGCACTTGACCGACC 59.398 55.000 27.06 0.00 0.00 4.79
3266 6374 2.531206 GATCTAGTGCACTTGACCGAC 58.469 52.381 29.09 17.81 31.08 4.79
3267 6375 1.476891 GGATCTAGTGCACTTGACCGA 59.523 52.381 29.09 16.31 31.08 4.69
3268 6376 1.471676 GGGATCTAGTGCACTTGACCG 60.472 57.143 29.09 12.05 31.08 4.79
3269 6377 1.471676 CGGGATCTAGTGCACTTGACC 60.472 57.143 29.09 27.33 31.08 4.02
3270 6378 1.927895 CGGGATCTAGTGCACTTGAC 58.072 55.000 29.09 21.79 31.08 3.18
3271 6379 0.175760 GCGGGATCTAGTGCACTTGA 59.824 55.000 28.75 28.75 32.71 3.02
3272 6380 0.176680 AGCGGGATCTAGTGCACTTG 59.823 55.000 27.06 23.41 0.00 3.16
3273 6381 0.461961 GAGCGGGATCTAGTGCACTT 59.538 55.000 27.06 7.02 0.00 3.16
3274 6382 1.729470 CGAGCGGGATCTAGTGCACT 61.729 60.000 25.12 25.12 0.00 4.40
3275 6383 1.299468 CGAGCGGGATCTAGTGCAC 60.299 63.158 9.40 9.40 0.00 4.57
3276 6384 0.823769 ATCGAGCGGGATCTAGTGCA 60.824 55.000 0.00 0.00 0.00 4.57
3277 6385 0.315568 AATCGAGCGGGATCTAGTGC 59.684 55.000 0.00 0.00 0.00 4.40
3278 6386 1.068194 GGAATCGAGCGGGATCTAGTG 60.068 57.143 0.00 0.00 0.00 2.74
3279 6387 1.249407 GGAATCGAGCGGGATCTAGT 58.751 55.000 0.00 0.00 0.00 2.57
3280 6388 0.528470 GGGAATCGAGCGGGATCTAG 59.472 60.000 0.00 0.00 0.00 2.43
3281 6389 1.241990 CGGGAATCGAGCGGGATCTA 61.242 60.000 0.00 0.00 42.43 1.98
3282 6390 2.565645 CGGGAATCGAGCGGGATCT 61.566 63.158 0.00 0.00 42.43 2.75
3283 6391 2.049063 CGGGAATCGAGCGGGATC 60.049 66.667 0.00 0.00 42.43 3.36
3284 6392 2.838225 ACGGGAATCGAGCGGGAT 60.838 61.111 0.00 0.00 42.43 3.85
3285 6393 3.833645 CACGGGAATCGAGCGGGA 61.834 66.667 0.00 0.00 42.43 5.14
3290 6398 1.419922 CAAACGCACGGGAATCGAG 59.580 57.895 0.00 0.00 42.43 4.04
3291 6399 2.673114 GCAAACGCACGGGAATCGA 61.673 57.895 0.00 0.00 42.43 3.59
3292 6400 2.202298 GCAAACGCACGGGAATCG 60.202 61.111 0.00 0.00 45.88 3.34
3293 6401 1.134694 GAGCAAACGCACGGGAATC 59.865 57.895 0.00 0.00 0.00 2.52
3294 6402 2.677003 CGAGCAAACGCACGGGAAT 61.677 57.895 0.00 0.00 39.42 3.01
3295 6403 3.342627 CGAGCAAACGCACGGGAA 61.343 61.111 0.00 0.00 39.42 3.97
3296 6404 4.595538 ACGAGCAAACGCACGGGA 62.596 61.111 8.97 0.00 46.05 5.14
3297 6405 4.072088 GACGAGCAAACGCACGGG 62.072 66.667 8.97 0.00 46.05 5.28
3298 6406 2.170260 AATGACGAGCAAACGCACGG 62.170 55.000 8.97 0.00 46.05 4.94
3299 6407 0.436913 TAATGACGAGCAAACGCACG 59.563 50.000 2.78 2.78 46.97 5.34
3300 6408 2.093625 TCATAATGACGAGCAAACGCAC 59.906 45.455 0.00 0.00 36.70 5.34
3301 6409 2.342179 TCATAATGACGAGCAAACGCA 58.658 42.857 0.00 0.00 36.70 5.24
3302 6410 3.383546 TTCATAATGACGAGCAAACGC 57.616 42.857 0.00 0.00 36.70 4.84
3303 6411 6.020984 TGAAATTCATAATGACGAGCAAACG 58.979 36.000 0.00 0.00 39.31 3.60
3304 6412 7.243487 TCTGAAATTCATAATGACGAGCAAAC 58.757 34.615 0.00 0.00 0.00 2.93
3305 6413 7.376435 TCTGAAATTCATAATGACGAGCAAA 57.624 32.000 0.00 0.00 0.00 3.68
3306 6414 6.983474 TCTGAAATTCATAATGACGAGCAA 57.017 33.333 0.00 0.00 0.00 3.91
3307 6415 6.983474 TTCTGAAATTCATAATGACGAGCA 57.017 33.333 0.00 0.00 0.00 4.26
3308 6416 9.374960 GTATTTCTGAAATTCATAATGACGAGC 57.625 33.333 19.68 0.00 32.38 5.03
3309 6417 9.869844 GGTATTTCTGAAATTCATAATGACGAG 57.130 33.333 19.68 0.00 32.38 4.18
3310 6418 9.389755 TGGTATTTCTGAAATTCATAATGACGA 57.610 29.630 19.68 5.25 32.38 4.20
3311 6419 9.438291 GTGGTATTTCTGAAATTCATAATGACG 57.562 33.333 19.68 0.00 32.38 4.35
3312 6420 9.438291 CGTGGTATTTCTGAAATTCATAATGAC 57.562 33.333 19.68 9.70 32.38 3.06
3313 6421 9.389755 TCGTGGTATTTCTGAAATTCATAATGA 57.610 29.630 19.68 11.88 32.38 2.57
3314 6422 9.438291 GTCGTGGTATTTCTGAAATTCATAATG 57.562 33.333 19.68 10.18 32.38 1.90
3315 6423 8.621286 GGTCGTGGTATTTCTGAAATTCATAAT 58.379 33.333 19.68 2.82 32.38 1.28
3316 6424 7.201574 CGGTCGTGGTATTTCTGAAATTCATAA 60.202 37.037 19.68 9.08 32.38 1.90
3317 6425 6.256975 CGGTCGTGGTATTTCTGAAATTCATA 59.743 38.462 19.68 6.43 32.38 2.15
3318 6426 5.064707 CGGTCGTGGTATTTCTGAAATTCAT 59.935 40.000 19.68 0.32 32.38 2.57
3319 6427 4.390603 CGGTCGTGGTATTTCTGAAATTCA 59.609 41.667 19.68 15.19 32.38 2.57
3320 6428 4.390909 ACGGTCGTGGTATTTCTGAAATTC 59.609 41.667 19.68 14.65 32.38 2.17
3321 6429 4.320870 ACGGTCGTGGTATTTCTGAAATT 58.679 39.130 19.68 5.79 32.38 1.82
3322 6430 3.930848 GACGGTCGTGGTATTTCTGAAAT 59.069 43.478 18.64 18.64 34.90 2.17
3323 6431 3.319755 GACGGTCGTGGTATTTCTGAAA 58.680 45.455 5.15 5.15 0.00 2.69
3324 6432 2.353011 GGACGGTCGTGGTATTTCTGAA 60.353 50.000 0.00 0.00 0.00 3.02
3325 6433 1.203052 GGACGGTCGTGGTATTTCTGA 59.797 52.381 0.00 0.00 0.00 3.27
3326 6434 1.067425 TGGACGGTCGTGGTATTTCTG 60.067 52.381 0.00 0.00 0.00 3.02
3327 6435 1.259609 TGGACGGTCGTGGTATTTCT 58.740 50.000 0.00 0.00 0.00 2.52
3328 6436 2.083167 TTGGACGGTCGTGGTATTTC 57.917 50.000 0.00 0.00 0.00 2.17
3329 6437 2.773993 ATTGGACGGTCGTGGTATTT 57.226 45.000 0.00 0.00 0.00 1.40
3330 6438 2.101917 CCTATTGGACGGTCGTGGTATT 59.898 50.000 0.00 0.00 34.57 1.89
3331 6439 1.684983 CCTATTGGACGGTCGTGGTAT 59.315 52.381 0.00 0.00 34.57 2.73
3332 6440 1.105457 CCTATTGGACGGTCGTGGTA 58.895 55.000 0.00 0.00 34.57 3.25
3333 6441 1.610554 CCCTATTGGACGGTCGTGGT 61.611 60.000 0.00 0.00 35.39 4.16
3334 6442 1.143183 CCCTATTGGACGGTCGTGG 59.857 63.158 0.00 0.00 35.39 4.94
3335 6443 1.143183 CCCCTATTGGACGGTCGTG 59.857 63.158 0.00 0.00 35.39 4.35
3336 6444 0.906282 AACCCCTATTGGACGGTCGT 60.906 55.000 1.43 0.00 35.39 4.34
3337 6445 0.251073 AAACCCCTATTGGACGGTCG 59.749 55.000 1.43 0.00 35.39 4.79
3338 6446 1.407851 GGAAACCCCTATTGGACGGTC 60.408 57.143 0.00 0.00 35.39 4.79
3339 6447 0.622136 GGAAACCCCTATTGGACGGT 59.378 55.000 0.00 0.00 35.39 4.83
3340 6448 3.489391 GGAAACCCCTATTGGACGG 57.511 57.895 0.00 0.00 35.39 4.79
3353 6461 5.952347 TGAGGGATAAACTAGAGGGAAAC 57.048 43.478 0.00 0.00 0.00 2.78
3354 6462 8.814448 AATATGAGGGATAAACTAGAGGGAAA 57.186 34.615 0.00 0.00 0.00 3.13
3355 6463 8.814448 AAATATGAGGGATAAACTAGAGGGAA 57.186 34.615 0.00 0.00 0.00 3.97
3356 6464 8.660435 CAAAATATGAGGGATAAACTAGAGGGA 58.340 37.037 0.00 0.00 0.00 4.20
3357 6465 7.885399 CCAAAATATGAGGGATAAACTAGAGGG 59.115 40.741 0.00 0.00 0.00 4.30
3358 6466 7.391833 GCCAAAATATGAGGGATAAACTAGAGG 59.608 40.741 0.00 0.00 0.00 3.69
3370 6478 3.017048 TCACCAGCCAAAATATGAGGG 57.983 47.619 0.00 0.00 0.00 4.30
3377 6485 5.163216 TGGAGAAAAATTCACCAGCCAAAAT 60.163 36.000 5.33 0.00 43.96 1.82
3380 6488 3.303938 TGGAGAAAAATTCACCAGCCAA 58.696 40.909 5.33 0.00 43.96 4.52
3385 6493 5.927819 AGCAAATTGGAGAAAAATTCACCA 58.072 33.333 5.33 5.33 46.53 4.17
3389 6497 5.412594 GGGGAAGCAAATTGGAGAAAAATTC 59.587 40.000 0.00 0.00 0.00 2.17
3446 6555 4.457603 CCCGAATTTCAGAAATACCACACA 59.542 41.667 8.88 0.00 0.00 3.72
3447 6556 4.142469 CCCCGAATTTCAGAAATACCACAC 60.142 45.833 8.88 0.00 0.00 3.82
3458 6567 3.290710 ACAATCATCCCCCGAATTTCAG 58.709 45.455 0.00 0.00 0.00 3.02
3463 6572 4.788925 TCTAAACAATCATCCCCCGAAT 57.211 40.909 0.00 0.00 0.00 3.34
3469 6578 8.854117 AGCAGAAAATATCTAAACAATCATCCC 58.146 33.333 0.00 0.00 36.32 3.85
3492 6601 8.644374 TTTCCCTAGCTTATTTTTCTAAAGCA 57.356 30.769 8.78 0.00 46.35 3.91
3505 6614 4.349930 ACCTGAACTGTTTTCCCTAGCTTA 59.650 41.667 0.00 0.00 0.00 3.09
3514 6623 6.564328 AGAATGAAACACCTGAACTGTTTTC 58.436 36.000 0.00 0.00 41.01 2.29
3521 6630 7.387948 TCTTTAGCTAGAATGAAACACCTGAAC 59.612 37.037 0.00 0.00 0.00 3.18
3524 6633 6.876257 ACTCTTTAGCTAGAATGAAACACCTG 59.124 38.462 0.00 0.00 0.00 4.00
3554 6663 6.354938 AGATTAAAACGTCTTTAGATCCCCC 58.645 40.000 0.00 0.00 0.00 5.40
3555 6664 7.012138 GGAAGATTAAAACGTCTTTAGATCCCC 59.988 40.741 0.00 4.59 34.97 4.81
3556 6665 7.551617 TGGAAGATTAAAACGTCTTTAGATCCC 59.448 37.037 0.00 2.85 34.97 3.85
3560 6670 6.932400 TGCTGGAAGATTAAAACGTCTTTAGA 59.068 34.615 0.00 0.00 34.97 2.10
3569 6679 7.334421 TGTCTGTCTATGCTGGAAGATTAAAAC 59.666 37.037 0.00 0.00 34.07 2.43
3580 6690 0.538584 TGCCTGTCTGTCTATGCTGG 59.461 55.000 0.00 0.00 0.00 4.85
3581 6691 1.649664 GTGCCTGTCTGTCTATGCTG 58.350 55.000 0.00 0.00 0.00 4.41
3582 6692 0.174389 CGTGCCTGTCTGTCTATGCT 59.826 55.000 0.00 0.00 0.00 3.79
3591 6701 2.661866 GCGTCAACGTGCCTGTCT 60.662 61.111 4.29 0.00 42.22 3.41
3600 6710 0.633733 GTCTACATCACGCGTCAACG 59.366 55.000 9.86 0.00 43.27 4.10
3606 6716 1.588404 GGAACATGTCTACATCACGCG 59.412 52.381 3.53 3.53 33.61 6.01
3634 6744 3.126858 GCTCATGCCGATTCACAAAAGTA 59.873 43.478 0.00 0.00 0.00 2.24
3656 6766 4.279169 ACCACAATTGAACCAGAATCACTG 59.721 41.667 13.59 0.00 45.36 3.66
3657 6767 4.473444 ACCACAATTGAACCAGAATCACT 58.527 39.130 13.59 0.00 0.00 3.41
3671 6781 3.303990 GCGCATTCGATCATACCACAATT 60.304 43.478 0.30 0.00 38.10 2.32
3689 6800 1.470051 TGAGTAGTGGTATGAGCGCA 58.530 50.000 11.47 0.00 0.00 6.09
3690 6801 2.294791 AGATGAGTAGTGGTATGAGCGC 59.705 50.000 0.00 0.00 0.00 5.92
3704 6815 7.814264 AGATTTGACAAAACAGAAGATGAGT 57.186 32.000 4.41 0.00 0.00 3.41
3708 6819 9.678260 AGCTATAGATTTGACAAAACAGAAGAT 57.322 29.630 4.41 0.00 0.00 2.40
3722 6833 3.248602 GTCGGCCACAAGCTATAGATTTG 59.751 47.826 2.24 9.56 43.05 2.32
3753 6864 1.002033 GTCTGCAAGCTTGTCCACTTG 60.002 52.381 26.55 6.85 44.88 3.16
3754 6865 1.312815 GTCTGCAAGCTTGTCCACTT 58.687 50.000 26.55 0.00 0.00 3.16
3765 6876 0.231534 CATATGAGCGCGTCTGCAAG 59.768 55.000 8.43 0.00 42.97 4.01
3776 6887 0.601311 GGACGGGCACTCATATGAGC 60.601 60.000 28.86 18.49 45.79 4.26
3780 6891 0.687354 GGATGGACGGGCACTCATAT 59.313 55.000 0.00 0.00 0.00 1.78
3790 6901 3.543680 AGTTATCACAAGGATGGACGG 57.456 47.619 0.00 0.00 36.72 4.79
3795 6906 5.824624 ACCATAGCAAGTTATCACAAGGATG 59.175 40.000 0.00 0.00 36.72 3.51
3813 6924 1.819632 GCCCTCGGTTGCACCATAG 60.820 63.158 6.21 3.08 38.47 2.23
3814 6925 1.847798 AAGCCCTCGGTTGCACCATA 61.848 55.000 6.21 0.00 38.47 2.74
3815 6926 2.713531 AAAGCCCTCGGTTGCACCAT 62.714 55.000 6.21 0.00 38.47 3.55
3816 6927 2.920076 AAAAGCCCTCGGTTGCACCA 62.920 55.000 6.21 0.00 38.47 4.17
3817 6928 2.200337 AAAAGCCCTCGGTTGCACC 61.200 57.895 0.00 0.00 34.05 5.01
3818 6929 1.007387 CAAAAGCCCTCGGTTGCAC 60.007 57.895 0.00 0.00 0.00 4.57
3819 6930 0.179015 TACAAAAGCCCTCGGTTGCA 60.179 50.000 0.00 0.00 0.00 4.08
3820 6931 1.173913 ATACAAAAGCCCTCGGTTGC 58.826 50.000 0.00 0.00 0.00 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.