Multiple sequence alignment - TraesCS6B01G048700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G048700 chr6B 100.000 2534 0 0 1 2534 28713064 28715597 0.000000e+00 4680.0
1 TraesCS6B01G048700 chr6B 95.369 799 34 2 823 1619 59294773 59295570 0.000000e+00 1267.0
2 TraesCS6B01G048700 chr6B 92.830 795 47 9 828 1615 28517497 28516706 0.000000e+00 1144.0
3 TraesCS6B01G048700 chr6B 90.862 777 46 19 829 1591 59232634 59233399 0.000000e+00 1018.0
4 TraesCS6B01G048700 chr6B 92.941 680 42 3 873 1552 29068516 29067843 0.000000e+00 985.0
5 TraesCS6B01G048700 chr6B 90.713 743 45 14 828 1553 28256806 28256071 0.000000e+00 968.0
6 TraesCS6B01G048700 chr6B 88.523 819 61 20 828 1619 28925854 28926666 0.000000e+00 961.0
7 TraesCS6B01G048700 chr6B 83.995 806 100 15 1 779 222243302 222242499 0.000000e+00 747.0
8 TraesCS6B01G048700 chr6B 84.015 807 97 18 1 779 589109894 589110696 0.000000e+00 747.0
9 TraesCS6B01G048700 chr6B 90.132 152 12 3 2330 2481 28927170 28927318 7.150000e-46 195.0
10 TraesCS6B01G048700 chr6B 84.277 159 18 5 2213 2369 59296020 59296173 5.650000e-32 148.0
11 TraesCS6B01G048700 chr6B 89.610 77 6 2 1978 2053 28516376 28516301 2.070000e-16 97.1
12 TraesCS6B01G048700 chr6D 87.190 1413 97 39 819 2181 16510581 16511959 0.000000e+00 1530.0
13 TraesCS6B01G048700 chr6D 93.287 715 36 9 911 1619 16390173 16389465 0.000000e+00 1044.0
14 TraesCS6B01G048700 chr6D 76.233 791 126 45 14 778 429590431 429589677 1.850000e-96 363.0
15 TraesCS6B01G048700 chr6D 85.806 310 22 5 2190 2499 16511940 16512227 2.450000e-80 309.0
16 TraesCS6B01G048700 chr6D 86.932 176 16 4 2219 2392 16389042 16388872 9.250000e-45 191.0
17 TraesCS6B01G048700 chr6D 93.506 77 3 2 1978 2053 16389205 16389130 2.060000e-21 113.0
18 TraesCS6B01G048700 chr3A 85.522 1409 120 39 819 2174 66249816 66251193 0.000000e+00 1395.0
19 TraesCS6B01G048700 chr3A 88.818 313 21 5 2230 2532 66251215 66251523 3.080000e-99 372.0
20 TraesCS6B01G048700 chr3A 75.952 420 75 17 7 405 197130096 197129682 2.570000e-45 193.0
21 TraesCS6B01G048700 chr6A 90.111 991 64 20 819 1785 16700803 16701783 0.000000e+00 1256.0
22 TraesCS6B01G048700 chr6A 86.505 1030 96 26 878 1880 16658808 16657795 0.000000e+00 1092.0
23 TraesCS6B01G048700 chr6A 83.391 578 44 18 1979 2532 16702363 16702912 2.930000e-134 488.0
24 TraesCS6B01G048700 chr6A 81.938 454 29 15 1876 2296 16701808 16702241 4.040000e-88 335.0
25 TraesCS6B01G048700 chr6A 76.389 432 74 17 7 420 179294122 179293701 9.190000e-50 207.0
26 TraesCS6B01G048700 chr6A 84.574 188 17 6 1802 1977 16662564 16662377 2.590000e-40 176.0
27 TraesCS6B01G048700 chr4D 86.104 806 84 8 1 779 418144301 418145105 0.000000e+00 843.0
28 TraesCS6B01G048700 chr4D 84.988 806 93 14 1 779 15125609 15126413 0.000000e+00 793.0
29 TraesCS6B01G048700 chr4D 85.025 394 43 3 7 385 363842283 363841891 1.100000e-103 387.0
30 TraesCS6B01G048700 chr4B 86.087 805 84 4 2 779 563966829 563967632 0.000000e+00 841.0
31 TraesCS6B01G048700 chr4B 83.684 809 100 18 1 779 208666119 208666925 0.000000e+00 734.0
32 TraesCS6B01G048700 chr4B 82.836 804 107 13 1 776 361237734 361238534 0.000000e+00 691.0
33 TraesCS6B01G048700 chr4B 83.569 706 84 16 1 677 587265529 587266231 1.280000e-177 632.0
34 TraesCS6B01G048700 chr5D 85.767 808 82 13 1 779 28245475 28244672 0.000000e+00 824.0
35 TraesCS6B01G048700 chr5D 85.396 808 86 16 1 779 542945650 542946454 0.000000e+00 809.0
36 TraesCS6B01G048700 chr1B 85.025 808 87 15 1 779 272068819 272068017 0.000000e+00 791.0
37 TraesCS6B01G048700 chr1B 82.976 793 106 15 2 776 332333358 332332577 0.000000e+00 689.0
38 TraesCS6B01G048700 chr1B 81.713 607 84 15 1 591 427393508 427392913 4.900000e-132 481.0
39 TraesCS6B01G048700 chr2B 84.461 798 94 12 1 770 409480592 409481387 0.000000e+00 760.0
40 TraesCS6B01G048700 chr7B 83.643 807 103 5 1 779 522795176 522795981 0.000000e+00 732.0
41 TraesCS6B01G048700 chr5B 82.032 807 115 13 1 779 606166027 606166831 0.000000e+00 660.0
42 TraesCS6B01G048700 chr3D 79.371 795 128 26 12 777 375638879 375638092 6.210000e-146 527.0
43 TraesCS6B01G048700 chr7A 83.387 313 43 6 13 320 645268757 645269065 5.340000e-72 281.0
44 TraesCS6B01G048700 chr7A 79.130 345 64 7 7 346 102412530 102412189 5.450000e-57 231.0
45 TraesCS6B01G048700 chr1A 73.479 822 151 49 7 776 383232514 383231708 5.410000e-62 248.0
46 TraesCS6B01G048700 chr2A 77.748 373 68 10 12 370 180780377 180780748 5.490000e-52 215.0
47 TraesCS6B01G048700 chr4A 77.551 343 73 2 7 346 143298791 143298450 1.190000e-48 204.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G048700 chr6B 28713064 28715597 2533 False 4680.000000 4680 100.000000 1 2534 1 chr6B.!!$F1 2533
1 TraesCS6B01G048700 chr6B 59232634 59233399 765 False 1018.000000 1018 90.862000 829 1591 1 chr6B.!!$F2 762
2 TraesCS6B01G048700 chr6B 29067843 29068516 673 True 985.000000 985 92.941000 873 1552 1 chr6B.!!$R2 679
3 TraesCS6B01G048700 chr6B 28256071 28256806 735 True 968.000000 968 90.713000 828 1553 1 chr6B.!!$R1 725
4 TraesCS6B01G048700 chr6B 222242499 222243302 803 True 747.000000 747 83.995000 1 779 1 chr6B.!!$R3 778
5 TraesCS6B01G048700 chr6B 589109894 589110696 802 False 747.000000 747 84.015000 1 779 1 chr6B.!!$F3 778
6 TraesCS6B01G048700 chr6B 59294773 59296173 1400 False 707.500000 1267 89.823000 823 2369 2 chr6B.!!$F5 1546
7 TraesCS6B01G048700 chr6B 28516301 28517497 1196 True 620.550000 1144 91.220000 828 2053 2 chr6B.!!$R4 1225
8 TraesCS6B01G048700 chr6B 28925854 28927318 1464 False 578.000000 961 89.327500 828 2481 2 chr6B.!!$F4 1653
9 TraesCS6B01G048700 chr6D 16510581 16512227 1646 False 919.500000 1530 86.498000 819 2499 2 chr6D.!!$F1 1680
10 TraesCS6B01G048700 chr6D 16388872 16390173 1301 True 449.333333 1044 91.241667 911 2392 3 chr6D.!!$R2 1481
11 TraesCS6B01G048700 chr6D 429589677 429590431 754 True 363.000000 363 76.233000 14 778 1 chr6D.!!$R1 764
12 TraesCS6B01G048700 chr3A 66249816 66251523 1707 False 883.500000 1395 87.170000 819 2532 2 chr3A.!!$F1 1713
13 TraesCS6B01G048700 chr6A 16700803 16702912 2109 False 693.000000 1256 85.146667 819 2532 3 chr6A.!!$F1 1713
14 TraesCS6B01G048700 chr6A 16657795 16662564 4769 True 634.000000 1092 85.539500 878 1977 2 chr6A.!!$R2 1099
15 TraesCS6B01G048700 chr4D 418144301 418145105 804 False 843.000000 843 86.104000 1 779 1 chr4D.!!$F2 778
16 TraesCS6B01G048700 chr4D 15125609 15126413 804 False 793.000000 793 84.988000 1 779 1 chr4D.!!$F1 778
17 TraesCS6B01G048700 chr4B 563966829 563967632 803 False 841.000000 841 86.087000 2 779 1 chr4B.!!$F3 777
18 TraesCS6B01G048700 chr4B 208666119 208666925 806 False 734.000000 734 83.684000 1 779 1 chr4B.!!$F1 778
19 TraesCS6B01G048700 chr4B 361237734 361238534 800 False 691.000000 691 82.836000 1 776 1 chr4B.!!$F2 775
20 TraesCS6B01G048700 chr4B 587265529 587266231 702 False 632.000000 632 83.569000 1 677 1 chr4B.!!$F4 676
21 TraesCS6B01G048700 chr5D 28244672 28245475 803 True 824.000000 824 85.767000 1 779 1 chr5D.!!$R1 778
22 TraesCS6B01G048700 chr5D 542945650 542946454 804 False 809.000000 809 85.396000 1 779 1 chr5D.!!$F1 778
23 TraesCS6B01G048700 chr1B 272068017 272068819 802 True 791.000000 791 85.025000 1 779 1 chr1B.!!$R1 778
24 TraesCS6B01G048700 chr1B 332332577 332333358 781 True 689.000000 689 82.976000 2 776 1 chr1B.!!$R2 774
25 TraesCS6B01G048700 chr1B 427392913 427393508 595 True 481.000000 481 81.713000 1 591 1 chr1B.!!$R3 590
26 TraesCS6B01G048700 chr2B 409480592 409481387 795 False 760.000000 760 84.461000 1 770 1 chr2B.!!$F1 769
27 TraesCS6B01G048700 chr7B 522795176 522795981 805 False 732.000000 732 83.643000 1 779 1 chr7B.!!$F1 778
28 TraesCS6B01G048700 chr5B 606166027 606166831 804 False 660.000000 660 82.032000 1 779 1 chr5B.!!$F1 778
29 TraesCS6B01G048700 chr3D 375638092 375638879 787 True 527.000000 527 79.371000 12 777 1 chr3D.!!$R1 765
30 TraesCS6B01G048700 chr1A 383231708 383232514 806 True 248.000000 248 73.479000 7 776 1 chr1A.!!$R1 769

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
793 841 0.53087 GGCTGATTCGTCAGTAGGGC 60.531 60.0 7.22 0.0 39.76 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2137 5236 0.320771 TTTCGGCTCAGCTCCAACTC 60.321 55.0 0.0 0.0 0.0 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 3.868077 CCGAGCTTGGAGTAGAAGAATTG 59.132 47.826 15.76 0.00 0.00 2.32
137 140 3.680786 CGGAGTGAGGTGGTGCGA 61.681 66.667 0.00 0.00 0.00 5.10
267 270 2.560119 CGAGATCTCCCGCTCCAGG 61.560 68.421 17.13 0.00 0.00 4.45
346 363 2.511600 GATGTTGGAGCCGTCCCG 60.512 66.667 0.00 0.00 43.15 5.14
494 533 6.544928 AAGAAGAGGAAGAAGAAGAGGATC 57.455 41.667 0.00 0.00 0.00 3.36
696 744 2.362503 TCCGCCTCGACCACAGAT 60.363 61.111 0.00 0.00 0.00 2.90
780 828 4.437587 GTGGGCTGGCAGGCTGAT 62.438 66.667 35.56 0.00 41.09 2.90
782 830 2.832201 GGGCTGGCAGGCTGATTC 60.832 66.667 35.56 18.28 41.09 2.52
783 831 3.207669 GGCTGGCAGGCTGATTCG 61.208 66.667 31.42 3.90 37.85 3.34
784 832 2.437359 GCTGGCAGGCTGATTCGT 60.437 61.111 20.86 0.00 0.00 3.85
785 833 2.467826 GCTGGCAGGCTGATTCGTC 61.468 63.158 20.86 0.00 0.00 4.20
788 836 1.078848 GGCAGGCTGATTCGTCAGT 60.079 57.895 20.86 0.00 39.76 3.41
790 838 1.565305 GCAGGCTGATTCGTCAGTAG 58.435 55.000 20.86 0.00 39.76 2.57
791 839 1.804372 GCAGGCTGATTCGTCAGTAGG 60.804 57.143 20.86 0.00 39.76 3.18
792 840 1.115467 AGGCTGATTCGTCAGTAGGG 58.885 55.000 7.22 0.00 39.76 3.53
793 841 0.530870 GGCTGATTCGTCAGTAGGGC 60.531 60.000 7.22 0.00 39.76 5.19
795 843 0.824109 CTGATTCGTCAGTAGGGCCA 59.176 55.000 6.18 0.00 33.32 5.36
796 844 1.414181 CTGATTCGTCAGTAGGGCCAT 59.586 52.381 6.18 0.00 33.32 4.40
797 845 1.412710 TGATTCGTCAGTAGGGCCATC 59.587 52.381 6.18 0.00 0.00 3.51
810 858 4.969196 CCATCCCACGGATCGCGG 62.969 72.222 6.13 0.00 40.98 6.46
998 3890 1.086634 GCCGGAGAAGTAGCAAGCAG 61.087 60.000 5.05 0.00 0.00 4.24
1193 4085 2.020836 GAGGTACGCGCCGATGTTTG 62.021 60.000 5.73 0.00 0.00 2.93
1263 4174 6.438763 ACTGACAGATTTCGTTTTTGAATCC 58.561 36.000 10.08 0.00 0.00 3.01
1651 4668 1.745087 CATGGGTGACATTGTACCTGC 59.255 52.381 12.28 0.00 37.84 4.85
1652 4669 1.064003 TGGGTGACATTGTACCTGCT 58.936 50.000 12.28 0.00 37.15 4.24
1654 4671 2.236146 TGGGTGACATTGTACCTGCTAG 59.764 50.000 12.28 0.00 37.15 3.42
1656 4673 3.522553 GGTGACATTGTACCTGCTAGTC 58.477 50.000 0.00 0.00 34.11 2.59
1657 4674 3.056107 GGTGACATTGTACCTGCTAGTCA 60.056 47.826 0.00 0.00 34.11 3.41
1660 4677 4.122776 GACATTGTACCTGCTAGTCATGG 58.877 47.826 0.00 0.00 0.00 3.66
1661 4678 3.774766 ACATTGTACCTGCTAGTCATGGA 59.225 43.478 0.00 0.00 0.00 3.41
1662 4679 3.887621 TTGTACCTGCTAGTCATGGAC 57.112 47.619 0.00 0.00 0.00 4.02
1663 4680 3.101643 TGTACCTGCTAGTCATGGACT 57.898 47.619 4.13 4.13 45.54 3.85
1666 4683 4.645136 TGTACCTGCTAGTCATGGACTAAG 59.355 45.833 7.44 3.57 43.36 2.18
1667 4684 3.982516 ACCTGCTAGTCATGGACTAAGA 58.017 45.455 7.44 0.00 43.36 2.10
1669 4686 4.343526 ACCTGCTAGTCATGGACTAAGATG 59.656 45.833 7.44 0.00 43.36 2.90
1711 4731 4.445453 TGTTGTTCTATCTATGGCTGCAG 58.555 43.478 10.11 10.11 0.00 4.41
1717 4737 5.144692 TCTATCTATGGCTGCAGTCATTC 57.855 43.478 36.54 9.51 41.22 2.67
1851 4890 7.504924 TTTCCGTTGATCTGTAATTTTCAGT 57.495 32.000 3.38 0.00 34.86 3.41
1922 4968 2.027192 AGCTGCGGGAAACTGAATCTAA 60.027 45.455 0.00 0.00 39.98 2.10
1928 4974 4.568760 GCGGGAAACTGAATCTAAGAAGAG 59.431 45.833 0.00 0.00 39.98 2.85
1931 4977 6.176896 GGGAAACTGAATCTAAGAAGAGCTT 58.823 40.000 0.00 0.00 40.68 3.74
1932 4978 7.331791 GGGAAACTGAATCTAAGAAGAGCTTA 58.668 38.462 0.00 0.00 38.05 3.09
1933 4979 7.990314 GGGAAACTGAATCTAAGAAGAGCTTAT 59.010 37.037 0.00 0.00 38.36 1.73
2091 5190 1.533625 TGAGCTGGTTACATGTTGCC 58.466 50.000 2.30 7.57 0.00 4.52
2092 5191 1.202867 TGAGCTGGTTACATGTTGCCA 60.203 47.619 16.82 16.82 0.00 4.92
2093 5192 1.885887 GAGCTGGTTACATGTTGCCAA 59.114 47.619 17.90 0.00 0.00 4.52
2094 5193 2.295909 GAGCTGGTTACATGTTGCCAAA 59.704 45.455 17.90 0.00 0.00 3.28
2095 5194 2.697751 AGCTGGTTACATGTTGCCAAAA 59.302 40.909 17.90 0.00 0.00 2.44
2096 5195 3.324556 AGCTGGTTACATGTTGCCAAAAT 59.675 39.130 17.90 7.68 0.00 1.82
2097 5196 4.526262 AGCTGGTTACATGTTGCCAAAATA 59.474 37.500 17.90 0.75 0.00 1.40
2098 5197 5.187576 AGCTGGTTACATGTTGCCAAAATAT 59.812 36.000 17.90 4.55 0.00 1.28
2099 5198 6.379703 AGCTGGTTACATGTTGCCAAAATATA 59.620 34.615 17.90 0.00 0.00 0.86
2100 5199 7.038659 GCTGGTTACATGTTGCCAAAATATAA 58.961 34.615 17.90 0.00 0.00 0.98
2101 5200 7.710475 GCTGGTTACATGTTGCCAAAATATAAT 59.290 33.333 17.90 0.00 0.00 1.28
2137 5236 7.596494 TGTTCATGAGCCAAAAGAATTCTTAG 58.404 34.615 20.76 15.53 34.61 2.18
2146 5245 6.616017 CCAAAAGAATTCTTAGAGTTGGAGC 58.384 40.000 29.59 0.00 40.19 4.70
2178 5305 2.053627 CATGCGAACTGAAGTTTTGGC 58.946 47.619 0.00 3.11 38.56 4.52
2179 5306 1.388547 TGCGAACTGAAGTTTTGGCT 58.611 45.000 12.75 0.00 38.56 4.75
2181 5308 1.333619 GCGAACTGAAGTTTTGGCTGA 59.666 47.619 0.00 0.00 38.56 4.26
2187 5314 5.405935 ACTGAAGTTTTGGCTGAAGTTTT 57.594 34.783 0.00 0.00 0.00 2.43
2250 5396 1.261238 ACTAGCCAGGTGAGGTGCTC 61.261 60.000 0.00 0.00 35.34 4.26
2371 5957 2.553028 GGAGTGCACAAGATTTCCTGGA 60.553 50.000 21.04 0.00 0.00 3.86
2413 5999 6.014242 TGTTGCATGGTGGGAACAATAATAAA 60.014 34.615 0.00 0.00 44.49 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 2.830370 CCATCGAGCTTTGGGGGC 60.830 66.667 0.00 0.00 0.00 5.80
137 140 3.195825 CCTCGAATTCTACAACCTCCAGT 59.804 47.826 3.52 0.00 0.00 4.00
688 736 2.202932 GCGCGGATCATCTGTGGT 60.203 61.111 8.83 0.00 34.00 4.16
721 769 3.813724 GCTGGGGCCTGCCACTAT 61.814 66.667 12.41 0.00 40.96 2.12
779 827 0.759346 GGATGGCCCTACTGACGAAT 59.241 55.000 0.00 0.00 0.00 3.34
780 828 2.208527 GGATGGCCCTACTGACGAA 58.791 57.895 0.00 0.00 0.00 3.85
813 861 0.680061 GGATCTTGGCGTAGTAGGGG 59.320 60.000 0.00 0.00 0.00 4.79
814 862 1.410004 TGGATCTTGGCGTAGTAGGG 58.590 55.000 0.00 0.00 0.00 3.53
816 864 2.460918 CGTTGGATCTTGGCGTAGTAG 58.539 52.381 0.00 0.00 0.00 2.57
855 903 2.519780 GAGGAGGGAGCGATCCGT 60.520 66.667 15.84 15.84 40.73 4.69
998 3890 2.193248 CCTTCCTTCCGGCCATCC 59.807 66.667 2.24 0.00 0.00 3.51
1193 4085 1.166531 AGTGCACAAGAAAGGACGGC 61.167 55.000 21.04 0.00 0.00 5.68
1651 4668 6.718912 TGGATCTCATCTTAGTCCATGACTAG 59.281 42.308 0.00 0.00 44.46 2.57
1652 4669 6.614657 TGGATCTCATCTTAGTCCATGACTA 58.385 40.000 0.00 0.00 41.51 2.59
1654 4671 5.798125 TGGATCTCATCTTAGTCCATGAC 57.202 43.478 0.00 0.00 34.23 3.06
1656 4673 6.766429 TGATTGGATCTCATCTTAGTCCATG 58.234 40.000 0.00 0.00 38.64 3.66
1657 4674 7.571071 ATGATTGGATCTCATCTTAGTCCAT 57.429 36.000 0.00 0.00 38.64 3.41
1660 4677 8.899427 TGAAATGATTGGATCTCATCTTAGTC 57.101 34.615 0.00 0.00 32.22 2.59
1661 4678 8.492782 ACTGAAATGATTGGATCTCATCTTAGT 58.507 33.333 0.00 0.00 32.22 2.24
1662 4679 8.905660 ACTGAAATGATTGGATCTCATCTTAG 57.094 34.615 0.00 0.00 32.22 2.18
1663 4680 8.712103 AGACTGAAATGATTGGATCTCATCTTA 58.288 33.333 0.00 0.00 32.22 2.10
1666 4683 6.766944 ACAGACTGAAATGATTGGATCTCATC 59.233 38.462 10.08 0.00 32.22 2.92
1667 4684 6.660800 ACAGACTGAAATGATTGGATCTCAT 58.339 36.000 10.08 0.00 34.86 2.90
1669 4686 6.373774 ACAACAGACTGAAATGATTGGATCTC 59.626 38.462 10.08 0.00 0.00 2.75
1711 4731 6.410540 AGGTAGAACAAGAGATTGGAATGAC 58.589 40.000 0.00 0.00 0.00 3.06
1717 4737 5.059833 GCCATAGGTAGAACAAGAGATTGG 58.940 45.833 0.00 0.00 0.00 3.16
1922 4968 6.709846 GTGCAGGATGATTTATAAGCTCTTCT 59.290 38.462 0.00 0.00 39.69 2.85
1928 4974 5.312079 AGAGGTGCAGGATGATTTATAAGC 58.688 41.667 0.00 0.00 39.69 3.09
1931 4977 4.287067 GGGAGAGGTGCAGGATGATTTATA 59.713 45.833 0.00 0.00 39.69 0.98
1932 4978 3.073650 GGGAGAGGTGCAGGATGATTTAT 59.926 47.826 0.00 0.00 39.69 1.40
1933 4979 2.439507 GGGAGAGGTGCAGGATGATTTA 59.560 50.000 0.00 0.00 39.69 1.40
1944 5002 4.767255 CCACGCAGGGAGAGGTGC 62.767 72.222 0.00 0.00 36.27 5.01
2097 5196 9.277783 GGCTCATGAACATGAACTAGTTATTAT 57.722 33.333 8.42 0.99 46.10 1.28
2098 5197 8.264347 TGGCTCATGAACATGAACTAGTTATTA 58.736 33.333 8.42 0.00 46.10 0.98
2099 5198 7.112122 TGGCTCATGAACATGAACTAGTTATT 58.888 34.615 8.42 0.93 46.10 1.40
2100 5199 6.653020 TGGCTCATGAACATGAACTAGTTAT 58.347 36.000 8.42 0.20 46.10 1.89
2101 5200 6.048732 TGGCTCATGAACATGAACTAGTTA 57.951 37.500 8.42 0.00 46.10 2.24
2102 5201 4.910195 TGGCTCATGAACATGAACTAGTT 58.090 39.130 8.13 8.13 46.10 2.24
2103 5202 4.558226 TGGCTCATGAACATGAACTAGT 57.442 40.909 16.49 0.00 46.10 2.57
2104 5203 5.885230 TTTGGCTCATGAACATGAACTAG 57.115 39.130 16.49 7.82 46.10 2.57
2105 5204 6.003326 TCTTTTGGCTCATGAACATGAACTA 58.997 36.000 16.49 9.00 46.10 2.24
2106 5205 4.828939 TCTTTTGGCTCATGAACATGAACT 59.171 37.500 16.49 0.00 46.10 3.01
2107 5206 5.125100 TCTTTTGGCTCATGAACATGAAC 57.875 39.130 16.49 12.69 46.10 3.18
2108 5207 5.787953 TTCTTTTGGCTCATGAACATGAA 57.212 34.783 16.49 2.06 46.10 2.57
2109 5208 5.988310 ATTCTTTTGGCTCATGAACATGA 57.012 34.783 15.25 15.25 44.83 3.07
2110 5209 6.395629 AGAATTCTTTTGGCTCATGAACATG 58.604 36.000 0.88 8.31 40.09 3.21
2111 5210 6.600882 AGAATTCTTTTGGCTCATGAACAT 57.399 33.333 0.88 0.00 0.00 2.71
2137 5236 0.320771 TTTCGGCTCAGCTCCAACTC 60.321 55.000 0.00 0.00 0.00 3.01
2146 5245 0.516877 TTCGCATGTTTTCGGCTCAG 59.483 50.000 0.00 0.00 0.00 3.35
2178 5305 3.374058 ACGTTGTCAGGTCAAAACTTCAG 59.626 43.478 0.00 0.00 0.00 3.02
2179 5306 3.340034 ACGTTGTCAGGTCAAAACTTCA 58.660 40.909 0.00 0.00 0.00 3.02
2181 5308 4.776795 AAACGTTGTCAGGTCAAAACTT 57.223 36.364 0.00 0.00 0.00 2.66
2187 5314 0.736053 GCCAAAACGTTGTCAGGTCA 59.264 50.000 0.00 0.00 32.40 4.02
2250 5396 8.642020 GTTTCTGCTTTAGCTGATTACAAAATG 58.358 33.333 11.37 0.00 45.95 2.32
2371 5957 9.316730 CCATGCAACATTAACTTGCTTATTTAT 57.683 29.630 16.71 3.12 43.76 1.40
2465 6051 7.496346 ACTGATGAATATACGGAATACCCAT 57.504 36.000 0.00 0.00 34.14 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.