Multiple sequence alignment - TraesCS6B01G048000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G048000 chr6B 100.000 2339 0 0 1 2339 28114147 28111809 0.000000e+00 4320.0
1 TraesCS6B01G048000 chr6B 84.728 753 103 11 1594 2339 231042408 231041661 0.000000e+00 743.0
2 TraesCS6B01G048000 chr6B 94.340 53 0 2 13 62 272270571 272270519 6.930000e-11 78.7
3 TraesCS6B01G048000 chr1D 96.378 994 31 2 370 1362 494486574 494487563 0.000000e+00 1631.0
4 TraesCS6B01G048000 chr7A 95.779 995 36 4 370 1363 50183909 50182920 0.000000e+00 1600.0
5 TraesCS6B01G048000 chr7A 97.500 40 1 0 15 54 680663257 680663296 4.170000e-08 69.4
6 TraesCS6B01G048000 chr1A 95.600 1000 38 4 370 1368 277626587 277625593 0.000000e+00 1598.0
7 TraesCS6B01G048000 chr1A 95.573 994 40 1 370 1363 260841938 260842927 0.000000e+00 1589.0
8 TraesCS6B01G048000 chr3B 95.766 992 38 1 370 1361 24511241 24510254 0.000000e+00 1596.0
9 TraesCS6B01G048000 chr3B 95.573 994 39 2 370 1362 541062608 541061619 0.000000e+00 1587.0
10 TraesCS6B01G048000 chr3B 86.747 747 91 6 1594 2339 695000060 695000799 0.000000e+00 824.0
11 TraesCS6B01G048000 chr3B 85.921 760 91 10 1596 2339 694983170 694983929 0.000000e+00 797.0
12 TraesCS6B01G048000 chr3B 85.259 753 102 8 1594 2339 242999957 243000707 0.000000e+00 767.0
13 TraesCS6B01G048000 chr5B 95.678 995 37 3 370 1363 666131441 666130452 0.000000e+00 1594.0
14 TraesCS6B01G048000 chr5B 86.631 748 86 8 1594 2338 494067981 494067245 0.000000e+00 815.0
15 TraesCS6B01G048000 chr7B 95.657 990 39 1 370 1359 33420839 33421824 0.000000e+00 1587.0
16 TraesCS6B01G048000 chr5A 95.395 999 40 4 370 1367 343043655 343042662 0.000000e+00 1585.0
17 TraesCS6B01G048000 chr5A 100.000 31 0 0 1520 1550 87938737 87938707 9.030000e-05 58.4
18 TraesCS6B01G048000 chr1B 85.958 762 89 9 1593 2338 640774815 640774056 0.000000e+00 798.0
19 TraesCS6B01G048000 chr2B 87.665 681 78 6 1594 2272 686344699 686345375 0.000000e+00 787.0
20 TraesCS6B01G048000 chr2B 85.353 751 100 10 1594 2339 78287797 78288542 0.000000e+00 769.0
21 TraesCS6B01G048000 chr2B 82.990 776 98 18 1594 2339 425645586 425644815 0.000000e+00 671.0
22 TraesCS6B01G048000 chr2B 92.157 51 2 2 14 62 453063114 453063064 1.160000e-08 71.3
23 TraesCS6B01G048000 chr4B 85.544 754 97 11 1594 2339 168357461 168358210 0.000000e+00 778.0
24 TraesCS6B01G048000 chr5D 92.593 54 2 2 12 63 432936678 432936625 2.490000e-10 76.8
25 TraesCS6B01G048000 chr3D 91.111 45 4 0 1517 1561 539244964 539244920 6.980000e-06 62.1
26 TraesCS6B01G048000 chr7D 96.970 33 1 0 1517 1549 62233874 62233906 3.250000e-04 56.5
27 TraesCS6B01G048000 chr7D 96.970 33 1 0 1517 1549 62256771 62256803 3.250000e-04 56.5
28 TraesCS6B01G048000 chr6D 100.000 29 0 0 1521 1549 449251131 449251103 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G048000 chr6B 28111809 28114147 2338 True 4320 4320 100.000 1 2339 1 chr6B.!!$R1 2338
1 TraesCS6B01G048000 chr6B 231041661 231042408 747 True 743 743 84.728 1594 2339 1 chr6B.!!$R2 745
2 TraesCS6B01G048000 chr1D 494486574 494487563 989 False 1631 1631 96.378 370 1362 1 chr1D.!!$F1 992
3 TraesCS6B01G048000 chr7A 50182920 50183909 989 True 1600 1600 95.779 370 1363 1 chr7A.!!$R1 993
4 TraesCS6B01G048000 chr1A 277625593 277626587 994 True 1598 1598 95.600 370 1368 1 chr1A.!!$R1 998
5 TraesCS6B01G048000 chr1A 260841938 260842927 989 False 1589 1589 95.573 370 1363 1 chr1A.!!$F1 993
6 TraesCS6B01G048000 chr3B 24510254 24511241 987 True 1596 1596 95.766 370 1361 1 chr3B.!!$R1 991
7 TraesCS6B01G048000 chr3B 541061619 541062608 989 True 1587 1587 95.573 370 1362 1 chr3B.!!$R2 992
8 TraesCS6B01G048000 chr3B 695000060 695000799 739 False 824 824 86.747 1594 2339 1 chr3B.!!$F3 745
9 TraesCS6B01G048000 chr3B 694983170 694983929 759 False 797 797 85.921 1596 2339 1 chr3B.!!$F2 743
10 TraesCS6B01G048000 chr3B 242999957 243000707 750 False 767 767 85.259 1594 2339 1 chr3B.!!$F1 745
11 TraesCS6B01G048000 chr5B 666130452 666131441 989 True 1594 1594 95.678 370 1363 1 chr5B.!!$R2 993
12 TraesCS6B01G048000 chr5B 494067245 494067981 736 True 815 815 86.631 1594 2338 1 chr5B.!!$R1 744
13 TraesCS6B01G048000 chr7B 33420839 33421824 985 False 1587 1587 95.657 370 1359 1 chr7B.!!$F1 989
14 TraesCS6B01G048000 chr5A 343042662 343043655 993 True 1585 1585 95.395 370 1367 1 chr5A.!!$R2 997
15 TraesCS6B01G048000 chr1B 640774056 640774815 759 True 798 798 85.958 1593 2338 1 chr1B.!!$R1 745
16 TraesCS6B01G048000 chr2B 686344699 686345375 676 False 787 787 87.665 1594 2272 1 chr2B.!!$F2 678
17 TraesCS6B01G048000 chr2B 78287797 78288542 745 False 769 769 85.353 1594 2339 1 chr2B.!!$F1 745
18 TraesCS6B01G048000 chr2B 425644815 425645586 771 True 671 671 82.990 1594 2339 1 chr2B.!!$R1 745
19 TraesCS6B01G048000 chr4B 168357461 168358210 749 False 778 778 85.544 1594 2339 1 chr4B.!!$F1 745

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
176 177 0.03213 CACTATCCGTCCATGGACCG 59.968 60.0 34.05 28.32 41.85 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1389 1391 0.249911 GACCATATGTCCTCACGGCC 60.25 60.0 1.24 0.0 38.09 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 7.859325 TTTCCCCTTCTTTATTAATGAGACG 57.141 36.000 0.00 0.00 0.00 4.18
32 33 6.801718 TCCCCTTCTTTATTAATGAGACGA 57.198 37.500 0.00 0.00 0.00 4.20
33 34 6.817184 TCCCCTTCTTTATTAATGAGACGAG 58.183 40.000 0.00 0.00 0.00 4.18
34 35 5.992217 CCCCTTCTTTATTAATGAGACGAGG 59.008 44.000 0.00 6.38 0.00 4.63
35 36 5.467063 CCCTTCTTTATTAATGAGACGAGGC 59.533 44.000 0.00 0.00 0.00 4.70
36 37 6.049149 CCTTCTTTATTAATGAGACGAGGCA 58.951 40.000 0.00 0.00 0.00 4.75
37 38 6.538742 CCTTCTTTATTAATGAGACGAGGCAA 59.461 38.462 0.00 0.00 0.00 4.52
38 39 7.065803 CCTTCTTTATTAATGAGACGAGGCAAA 59.934 37.037 0.00 0.00 0.00 3.68
39 40 7.539712 TCTTTATTAATGAGACGAGGCAAAG 57.460 36.000 0.00 0.00 0.00 2.77
40 41 7.103641 TCTTTATTAATGAGACGAGGCAAAGT 58.896 34.615 0.00 0.00 0.00 2.66
41 42 7.606456 TCTTTATTAATGAGACGAGGCAAAGTT 59.394 33.333 0.00 0.00 0.00 2.66
42 43 7.681939 TTATTAATGAGACGAGGCAAAGTTT 57.318 32.000 0.00 0.00 0.00 2.66
43 44 6.575162 ATTAATGAGACGAGGCAAAGTTTT 57.425 33.333 0.00 0.00 0.00 2.43
44 45 4.918810 AATGAGACGAGGCAAAGTTTTT 57.081 36.364 0.00 0.00 0.00 1.94
45 46 3.691049 TGAGACGAGGCAAAGTTTTTG 57.309 42.857 0.00 0.00 0.00 2.44
46 47 2.223479 TGAGACGAGGCAAAGTTTTTGC 60.223 45.455 16.05 16.05 44.22 3.68
52 53 3.659850 GCAAAGTTTTTGCCTCCGT 57.340 47.368 13.97 0.00 39.38 4.69
53 54 1.934589 GCAAAGTTTTTGCCTCCGTT 58.065 45.000 13.97 0.00 39.38 4.44
54 55 3.086818 GCAAAGTTTTTGCCTCCGTTA 57.913 42.857 13.97 0.00 39.38 3.18
55 56 3.449632 GCAAAGTTTTTGCCTCCGTTAA 58.550 40.909 13.97 0.00 39.38 2.01
56 57 3.866327 GCAAAGTTTTTGCCTCCGTTAAA 59.134 39.130 13.97 0.00 39.38 1.52
57 58 4.330347 GCAAAGTTTTTGCCTCCGTTAAAA 59.670 37.500 13.97 0.00 39.38 1.52
58 59 5.163844 GCAAAGTTTTTGCCTCCGTTAAAAA 60.164 36.000 13.97 0.00 39.38 1.94
81 82 7.527084 AAAAACATCGCTAGAGATAGTCAAC 57.473 36.000 8.78 0.00 0.00 3.18
82 83 6.458232 AAACATCGCTAGAGATAGTCAACT 57.542 37.500 8.78 0.00 0.00 3.16
83 84 7.569639 AAACATCGCTAGAGATAGTCAACTA 57.430 36.000 8.78 0.00 0.00 2.24
84 85 6.795098 ACATCGCTAGAGATAGTCAACTAG 57.205 41.667 8.78 0.00 36.44 2.57
85 86 6.526526 ACATCGCTAGAGATAGTCAACTAGA 58.473 40.000 8.78 0.00 35.69 2.43
86 87 6.993308 ACATCGCTAGAGATAGTCAACTAGAA 59.007 38.462 8.78 0.00 35.69 2.10
87 88 7.172532 ACATCGCTAGAGATAGTCAACTAGAAG 59.827 40.741 8.78 0.00 35.69 2.85
88 89 6.818233 TCGCTAGAGATAGTCAACTAGAAGA 58.182 40.000 0.00 0.00 35.69 2.87
89 90 7.273712 TCGCTAGAGATAGTCAACTAGAAGAA 58.726 38.462 0.00 0.00 35.69 2.52
90 91 7.934665 TCGCTAGAGATAGTCAACTAGAAGAAT 59.065 37.037 0.00 0.00 35.69 2.40
91 92 8.564574 CGCTAGAGATAGTCAACTAGAAGAATT 58.435 37.037 0.00 0.00 35.69 2.17
92 93 9.677567 GCTAGAGATAGTCAACTAGAAGAATTG 57.322 37.037 0.00 0.00 35.69 2.32
94 95 8.602472 AGAGATAGTCAACTAGAAGAATTGGT 57.398 34.615 0.00 0.00 0.00 3.67
95 96 9.702253 AGAGATAGTCAACTAGAAGAATTGGTA 57.298 33.333 0.00 0.00 0.00 3.25
101 102 9.793259 AGTCAACTAGAAGAATTGGTATGAAAA 57.207 29.630 0.00 0.00 0.00 2.29
109 110 9.454859 AGAAGAATTGGTATGAAAAAGTAGAGG 57.545 33.333 0.00 0.00 0.00 3.69
110 111 9.232473 GAAGAATTGGTATGAAAAAGTAGAGGT 57.768 33.333 0.00 0.00 0.00 3.85
115 116 8.857694 TTGGTATGAAAAAGTAGAGGTAAAGG 57.142 34.615 0.00 0.00 0.00 3.11
116 117 6.882678 TGGTATGAAAAAGTAGAGGTAAAGGC 59.117 38.462 0.00 0.00 0.00 4.35
117 118 6.882678 GGTATGAAAAAGTAGAGGTAAAGGCA 59.117 38.462 0.00 0.00 0.00 4.75
118 119 7.556635 GGTATGAAAAAGTAGAGGTAAAGGCAT 59.443 37.037 0.00 0.00 0.00 4.40
119 120 9.609346 GTATGAAAAAGTAGAGGTAAAGGCATA 57.391 33.333 0.00 0.00 0.00 3.14
121 122 9.700831 ATGAAAAAGTAGAGGTAAAGGCATATT 57.299 29.630 0.00 0.00 0.00 1.28
122 123 9.528489 TGAAAAAGTAGAGGTAAAGGCATATTT 57.472 29.630 0.00 0.00 0.00 1.40
125 126 9.628500 AAAAGTAGAGGTAAAGGCATATTTAGG 57.372 33.333 0.00 0.00 0.00 2.69
126 127 7.932683 AGTAGAGGTAAAGGCATATTTAGGT 57.067 36.000 0.00 0.00 0.00 3.08
127 128 7.964624 AGTAGAGGTAAAGGCATATTTAGGTC 58.035 38.462 0.00 0.00 0.00 3.85
128 129 6.824958 AGAGGTAAAGGCATATTTAGGTCA 57.175 37.500 0.00 0.00 0.00 4.02
129 130 7.394144 AGAGGTAAAGGCATATTTAGGTCAT 57.606 36.000 0.00 0.00 0.00 3.06
130 131 7.454225 AGAGGTAAAGGCATATTTAGGTCATC 58.546 38.462 0.00 0.00 0.00 2.92
131 132 7.293535 AGAGGTAAAGGCATATTTAGGTCATCT 59.706 37.037 0.00 0.00 0.00 2.90
132 133 7.454225 AGGTAAAGGCATATTTAGGTCATCTC 58.546 38.462 0.00 0.00 0.00 2.75
133 134 6.369065 GGTAAAGGCATATTTAGGTCATCTCG 59.631 42.308 0.00 0.00 0.00 4.04
134 135 5.808366 AAGGCATATTTAGGTCATCTCGA 57.192 39.130 0.00 0.00 0.00 4.04
135 136 5.808366 AGGCATATTTAGGTCATCTCGAA 57.192 39.130 0.00 0.00 0.00 3.71
136 137 5.542779 AGGCATATTTAGGTCATCTCGAAC 58.457 41.667 0.00 0.00 0.00 3.95
137 138 4.386049 GGCATATTTAGGTCATCTCGAACG 59.614 45.833 0.00 0.00 35.97 3.95
138 139 4.143305 GCATATTTAGGTCATCTCGAACGC 60.143 45.833 0.00 0.00 35.97 4.84
139 140 3.802948 ATTTAGGTCATCTCGAACGCT 57.197 42.857 0.00 0.00 35.97 5.07
140 141 4.913335 ATTTAGGTCATCTCGAACGCTA 57.087 40.909 0.00 0.00 35.97 4.26
141 142 3.687572 TTAGGTCATCTCGAACGCTAC 57.312 47.619 0.00 0.00 35.97 3.58
142 143 0.739561 AGGTCATCTCGAACGCTACC 59.260 55.000 0.00 0.00 35.97 3.18
143 144 0.248949 GGTCATCTCGAACGCTACCC 60.249 60.000 0.00 0.00 0.00 3.69
144 145 0.739561 GTCATCTCGAACGCTACCCT 59.260 55.000 0.00 0.00 0.00 4.34
145 146 1.134560 GTCATCTCGAACGCTACCCTT 59.865 52.381 0.00 0.00 0.00 3.95
146 147 1.822990 TCATCTCGAACGCTACCCTTT 59.177 47.619 0.00 0.00 0.00 3.11
147 148 3.018856 TCATCTCGAACGCTACCCTTTA 58.981 45.455 0.00 0.00 0.00 1.85
148 149 3.444742 TCATCTCGAACGCTACCCTTTAA 59.555 43.478 0.00 0.00 0.00 1.52
149 150 3.940209 TCTCGAACGCTACCCTTTAAA 57.060 42.857 0.00 0.00 0.00 1.52
150 151 4.255833 TCTCGAACGCTACCCTTTAAAA 57.744 40.909 0.00 0.00 0.00 1.52
151 152 3.989817 TCTCGAACGCTACCCTTTAAAAC 59.010 43.478 0.00 0.00 0.00 2.43
152 153 3.726607 TCGAACGCTACCCTTTAAAACA 58.273 40.909 0.00 0.00 0.00 2.83
153 154 3.742369 TCGAACGCTACCCTTTAAAACAG 59.258 43.478 0.00 0.00 0.00 3.16
154 155 3.742369 CGAACGCTACCCTTTAAAACAGA 59.258 43.478 0.00 0.00 0.00 3.41
155 156 4.376717 CGAACGCTACCCTTTAAAACAGAC 60.377 45.833 0.00 0.00 0.00 3.51
156 157 4.075963 ACGCTACCCTTTAAAACAGACA 57.924 40.909 0.00 0.00 0.00 3.41
157 158 3.811497 ACGCTACCCTTTAAAACAGACAC 59.189 43.478 0.00 0.00 0.00 3.67
158 159 3.810941 CGCTACCCTTTAAAACAGACACA 59.189 43.478 0.00 0.00 0.00 3.72
159 160 4.319261 CGCTACCCTTTAAAACAGACACAC 60.319 45.833 0.00 0.00 0.00 3.82
160 161 4.820173 GCTACCCTTTAAAACAGACACACT 59.180 41.667 0.00 0.00 0.00 3.55
161 162 5.993441 GCTACCCTTTAAAACAGACACACTA 59.007 40.000 0.00 0.00 0.00 2.74
162 163 6.653740 GCTACCCTTTAAAACAGACACACTAT 59.346 38.462 0.00 0.00 0.00 2.12
163 164 7.148457 GCTACCCTTTAAAACAGACACACTATC 60.148 40.741 0.00 0.00 0.00 2.08
164 165 6.002082 ACCCTTTAAAACAGACACACTATCC 58.998 40.000 0.00 0.00 0.00 2.59
165 166 5.121768 CCCTTTAAAACAGACACACTATCCG 59.878 44.000 0.00 0.00 0.00 4.18
166 167 5.699458 CCTTTAAAACAGACACACTATCCGT 59.301 40.000 0.00 0.00 0.00 4.69
167 168 6.128634 CCTTTAAAACAGACACACTATCCGTC 60.129 42.308 0.00 0.00 0.00 4.79
168 169 3.314541 AAACAGACACACTATCCGTCC 57.685 47.619 0.00 0.00 0.00 4.79
169 170 1.919240 ACAGACACACTATCCGTCCA 58.081 50.000 0.00 0.00 0.00 4.02
170 171 2.457598 ACAGACACACTATCCGTCCAT 58.542 47.619 0.00 0.00 0.00 3.41
171 172 2.166459 ACAGACACACTATCCGTCCATG 59.834 50.000 0.00 0.00 0.00 3.66
172 173 1.757118 AGACACACTATCCGTCCATGG 59.243 52.381 4.97 4.97 0.00 3.66
173 174 1.754803 GACACACTATCCGTCCATGGA 59.245 52.381 11.44 11.44 43.58 3.41
174 175 1.480954 ACACACTATCCGTCCATGGAC 59.519 52.381 31.59 31.59 41.85 4.02
175 176 1.120530 ACACTATCCGTCCATGGACC 58.879 55.000 34.05 19.10 41.85 4.46
176 177 0.032130 CACTATCCGTCCATGGACCG 59.968 60.000 34.05 28.32 41.85 4.79
177 178 1.006102 CTATCCGTCCATGGACCGC 60.006 63.158 34.05 14.42 41.85 5.68
178 179 2.749110 CTATCCGTCCATGGACCGCG 62.749 65.000 34.05 24.26 41.85 6.46
202 203 2.102357 CGCGTCCGCTCACAGTAT 59.898 61.111 10.21 0.00 39.32 2.12
203 204 1.354155 CGCGTCCGCTCACAGTATA 59.646 57.895 10.21 0.00 39.32 1.47
204 205 0.928908 CGCGTCCGCTCACAGTATAC 60.929 60.000 10.21 0.00 39.32 1.47
205 206 0.928908 GCGTCCGCTCACAGTATACG 60.929 60.000 4.10 0.00 38.26 3.06
206 207 0.654160 CGTCCGCTCACAGTATACGA 59.346 55.000 0.00 0.00 0.00 3.43
207 208 1.332993 CGTCCGCTCACAGTATACGAG 60.333 57.143 0.00 0.00 0.00 4.18
208 209 1.938577 GTCCGCTCACAGTATACGAGA 59.061 52.381 9.64 3.42 0.00 4.04
209 210 2.032722 GTCCGCTCACAGTATACGAGAG 60.033 54.545 14.19 14.19 0.00 3.20
213 214 2.032722 GCTCACAGTATACGAGAGTCGG 60.033 54.545 17.56 5.38 45.59 4.79
214 215 3.196463 CTCACAGTATACGAGAGTCGGT 58.804 50.000 11.67 0.00 45.59 4.69
215 216 3.193263 TCACAGTATACGAGAGTCGGTC 58.807 50.000 0.86 0.00 45.59 4.79
216 217 2.934553 CACAGTATACGAGAGTCGGTCA 59.065 50.000 0.86 0.00 45.59 4.02
217 218 3.560481 CACAGTATACGAGAGTCGGTCAT 59.440 47.826 0.86 0.00 45.59 3.06
218 219 3.808726 ACAGTATACGAGAGTCGGTCATC 59.191 47.826 0.86 0.00 45.59 2.92
219 220 3.186817 CAGTATACGAGAGTCGGTCATCC 59.813 52.174 0.86 0.00 45.59 3.51
220 221 2.343484 ATACGAGAGTCGGTCATCCA 57.657 50.000 0.86 0.00 45.59 3.41
221 222 2.118313 TACGAGAGTCGGTCATCCAA 57.882 50.000 0.86 0.00 45.59 3.53
222 223 0.526662 ACGAGAGTCGGTCATCCAAC 59.473 55.000 0.86 0.00 45.59 3.77
223 224 0.179134 CGAGAGTCGGTCATCCAACC 60.179 60.000 0.00 0.00 36.00 3.77
224 225 0.895530 GAGAGTCGGTCATCCAACCA 59.104 55.000 0.00 0.00 39.43 3.67
225 226 1.482593 GAGAGTCGGTCATCCAACCAT 59.517 52.381 0.00 0.00 39.43 3.55
226 227 1.208052 AGAGTCGGTCATCCAACCATG 59.792 52.381 0.00 0.00 39.43 3.66
227 228 0.392998 AGTCGGTCATCCAACCATGC 60.393 55.000 0.00 0.00 39.43 4.06
228 229 1.077787 TCGGTCATCCAACCATGCC 60.078 57.895 0.00 0.00 39.43 4.40
229 230 2.120909 CGGTCATCCAACCATGCCC 61.121 63.158 0.00 0.00 39.43 5.36
230 231 1.758122 GGTCATCCAACCATGCCCC 60.758 63.158 0.00 0.00 39.27 5.80
231 232 1.307647 GTCATCCAACCATGCCCCT 59.692 57.895 0.00 0.00 0.00 4.79
232 233 0.324645 GTCATCCAACCATGCCCCTT 60.325 55.000 0.00 0.00 0.00 3.95
233 234 1.064017 GTCATCCAACCATGCCCCTTA 60.064 52.381 0.00 0.00 0.00 2.69
234 235 1.643286 TCATCCAACCATGCCCCTTAA 59.357 47.619 0.00 0.00 0.00 1.85
235 236 2.043664 TCATCCAACCATGCCCCTTAAA 59.956 45.455 0.00 0.00 0.00 1.52
236 237 2.938428 TCCAACCATGCCCCTTAAAT 57.062 45.000 0.00 0.00 0.00 1.40
237 238 4.078922 TCATCCAACCATGCCCCTTAAATA 60.079 41.667 0.00 0.00 0.00 1.40
238 239 3.909732 TCCAACCATGCCCCTTAAATAG 58.090 45.455 0.00 0.00 0.00 1.73
239 240 2.965147 CCAACCATGCCCCTTAAATAGG 59.035 50.000 0.00 0.00 44.33 2.57
248 249 5.139435 GCCCCTTAAATAGGCATCAAATC 57.861 43.478 5.43 0.00 46.34 2.17
249 250 4.835056 GCCCCTTAAATAGGCATCAAATCT 59.165 41.667 5.43 0.00 46.34 2.40
250 251 5.279156 GCCCCTTAAATAGGCATCAAATCTG 60.279 44.000 5.43 0.00 46.34 2.90
251 252 5.244626 CCCCTTAAATAGGCATCAAATCTGG 59.755 44.000 0.00 0.00 43.27 3.86
252 253 6.070656 CCCTTAAATAGGCATCAAATCTGGA 58.929 40.000 0.00 0.00 43.27 3.86
253 254 6.015940 CCCTTAAATAGGCATCAAATCTGGAC 60.016 42.308 0.00 0.00 43.27 4.02
254 255 6.293626 CCTTAAATAGGCATCAAATCTGGACG 60.294 42.308 0.00 0.00 37.17 4.79
255 256 3.845781 ATAGGCATCAAATCTGGACGT 57.154 42.857 0.00 0.00 0.00 4.34
256 257 2.496899 AGGCATCAAATCTGGACGTT 57.503 45.000 0.00 0.00 0.00 3.99
257 258 3.627395 AGGCATCAAATCTGGACGTTA 57.373 42.857 0.00 0.00 0.00 3.18
258 259 3.535561 AGGCATCAAATCTGGACGTTAG 58.464 45.455 0.00 0.00 0.00 2.34
259 260 3.197766 AGGCATCAAATCTGGACGTTAGA 59.802 43.478 6.01 6.01 0.00 2.10
260 261 3.557595 GGCATCAAATCTGGACGTTAGAG 59.442 47.826 9.00 0.00 0.00 2.43
261 262 3.557595 GCATCAAATCTGGACGTTAGAGG 59.442 47.826 9.00 2.94 0.00 3.69
262 263 4.759782 CATCAAATCTGGACGTTAGAGGT 58.240 43.478 9.00 0.00 0.00 3.85
263 264 4.188247 TCAAATCTGGACGTTAGAGGTG 57.812 45.455 9.00 8.88 0.00 4.00
264 265 3.056107 TCAAATCTGGACGTTAGAGGTGG 60.056 47.826 9.00 0.00 0.00 4.61
265 266 1.486211 ATCTGGACGTTAGAGGTGGG 58.514 55.000 9.00 0.00 0.00 4.61
266 267 1.218316 CTGGACGTTAGAGGTGGGC 59.782 63.158 0.00 0.00 0.00 5.36
267 268 2.240162 CTGGACGTTAGAGGTGGGCC 62.240 65.000 0.00 0.00 0.00 5.80
268 269 2.288025 GGACGTTAGAGGTGGGCCA 61.288 63.158 0.00 0.00 37.19 5.36
269 270 1.218316 GACGTTAGAGGTGGGCCAG 59.782 63.158 6.40 0.00 37.19 4.85
270 271 2.240162 GACGTTAGAGGTGGGCCAGG 62.240 65.000 6.40 0.00 37.19 4.45
271 272 2.272471 GTTAGAGGTGGGCCAGGC 59.728 66.667 6.40 1.26 37.19 4.85
272 273 3.399181 TTAGAGGTGGGCCAGGCG 61.399 66.667 6.40 0.00 37.19 5.52
284 285 4.208686 CAGGCGGGCGTAGAGGAC 62.209 72.222 0.00 0.00 0.00 3.85
285 286 4.753662 AGGCGGGCGTAGAGGACA 62.754 66.667 0.00 0.00 0.00 4.02
286 287 3.766691 GGCGGGCGTAGAGGACAA 61.767 66.667 0.00 0.00 0.00 3.18
287 288 2.263540 GCGGGCGTAGAGGACAAA 59.736 61.111 0.00 0.00 0.00 2.83
288 289 1.810030 GCGGGCGTAGAGGACAAAG 60.810 63.158 0.00 0.00 0.00 2.77
289 290 1.810030 CGGGCGTAGAGGACAAAGC 60.810 63.158 0.00 0.00 0.00 3.51
290 291 1.295423 GGGCGTAGAGGACAAAGCA 59.705 57.895 0.00 0.00 0.00 3.91
291 292 1.019805 GGGCGTAGAGGACAAAGCAC 61.020 60.000 0.00 0.00 0.00 4.40
292 293 0.320421 GGCGTAGAGGACAAAGCACA 60.320 55.000 0.00 0.00 0.00 4.57
293 294 1.676014 GGCGTAGAGGACAAAGCACAT 60.676 52.381 0.00 0.00 0.00 3.21
294 295 1.394917 GCGTAGAGGACAAAGCACATG 59.605 52.381 0.00 0.00 0.00 3.21
295 296 2.002586 CGTAGAGGACAAAGCACATGG 58.997 52.381 0.00 0.00 0.00 3.66
296 297 2.359900 GTAGAGGACAAAGCACATGGG 58.640 52.381 0.00 0.00 0.00 4.00
297 298 0.773644 AGAGGACAAAGCACATGGGT 59.226 50.000 0.00 0.00 0.00 4.51
298 299 1.145738 AGAGGACAAAGCACATGGGTT 59.854 47.619 0.00 0.00 39.32 4.11
299 300 1.270550 GAGGACAAAGCACATGGGTTG 59.729 52.381 0.00 0.00 37.28 3.77
300 301 1.133513 AGGACAAAGCACATGGGTTGA 60.134 47.619 5.38 0.00 37.28 3.18
301 302 1.270550 GGACAAAGCACATGGGTTGAG 59.729 52.381 5.38 0.00 37.28 3.02
302 303 2.229792 GACAAAGCACATGGGTTGAGA 58.770 47.619 5.38 0.00 37.28 3.27
303 304 2.227388 GACAAAGCACATGGGTTGAGAG 59.773 50.000 5.38 0.00 37.28 3.20
304 305 1.542915 CAAAGCACATGGGTTGAGAGG 59.457 52.381 0.00 0.00 37.28 3.69
305 306 1.067295 AAGCACATGGGTTGAGAGGA 58.933 50.000 0.00 0.00 35.50 3.71
306 307 0.326264 AGCACATGGGTTGAGAGGAC 59.674 55.000 0.00 0.00 0.00 3.85
307 308 0.036732 GCACATGGGTTGAGAGGACA 59.963 55.000 0.00 0.00 0.00 4.02
308 309 1.340405 GCACATGGGTTGAGAGGACAT 60.340 52.381 0.00 0.00 0.00 3.06
309 310 2.362736 CACATGGGTTGAGAGGACATG 58.637 52.381 0.00 0.00 43.29 3.21
310 311 1.988107 ACATGGGTTGAGAGGACATGT 59.012 47.619 0.00 0.00 45.07 3.21
311 312 2.362736 CATGGGTTGAGAGGACATGTG 58.637 52.381 1.15 0.00 35.44 3.21
312 313 0.692476 TGGGTTGAGAGGACATGTGG 59.308 55.000 1.15 0.00 0.00 4.17
313 314 0.693049 GGGTTGAGAGGACATGTGGT 59.307 55.000 1.15 0.00 0.00 4.16
314 315 1.339151 GGGTTGAGAGGACATGTGGTC 60.339 57.143 1.15 0.00 46.20 4.02
324 325 3.904136 GACATGTGGTCCAACTGAAAG 57.096 47.619 1.15 0.00 40.83 2.62
325 326 3.214328 GACATGTGGTCCAACTGAAAGT 58.786 45.455 1.15 0.00 45.84 2.66
326 327 3.003689 GACATGTGGTCCAACTGAAAGTG 59.996 47.826 1.15 0.00 43.98 3.16
327 328 6.045350 GACATGTGGTCCAACTGAAAGTGG 62.045 50.000 1.15 0.00 43.98 4.00
336 337 3.879912 CTGAAAGTGGGCAAAGCAG 57.120 52.632 0.00 0.00 0.00 4.24
337 338 1.321474 CTGAAAGTGGGCAAAGCAGA 58.679 50.000 0.00 0.00 0.00 4.26
338 339 1.000938 CTGAAAGTGGGCAAAGCAGAC 60.001 52.381 0.00 0.00 0.00 3.51
339 340 0.315251 GAAAGTGGGCAAAGCAGACC 59.685 55.000 0.00 0.00 0.00 3.85
340 341 0.396974 AAAGTGGGCAAAGCAGACCA 60.397 50.000 0.00 0.00 0.00 4.02
341 342 3.042560 GTGGGCAAAGCAGACCAC 58.957 61.111 12.30 12.30 45.56 4.16
342 343 2.926250 TGGGCAAAGCAGACCACT 59.074 55.556 0.00 0.00 0.00 4.00
343 344 1.529010 TGGGCAAAGCAGACCACTG 60.529 57.895 0.00 0.00 45.91 3.66
353 354 2.060326 CAGACCACTGCATGCAAAAG 57.940 50.000 22.88 12.90 37.33 2.27
354 355 1.338973 CAGACCACTGCATGCAAAAGT 59.661 47.619 22.88 17.88 37.33 2.66
355 356 1.610522 AGACCACTGCATGCAAAAGTC 59.389 47.619 22.88 24.30 0.00 3.01
356 357 1.337703 GACCACTGCATGCAAAAGTCA 59.662 47.619 26.53 5.36 0.00 3.41
357 358 1.755959 ACCACTGCATGCAAAAGTCAA 59.244 42.857 22.88 0.00 0.00 3.18
358 359 2.168106 ACCACTGCATGCAAAAGTCAAA 59.832 40.909 22.88 0.00 0.00 2.69
359 360 3.196463 CCACTGCATGCAAAAGTCAAAA 58.804 40.909 22.88 0.00 0.00 2.44
360 361 3.810941 CCACTGCATGCAAAAGTCAAAAT 59.189 39.130 22.88 0.00 0.00 1.82
361 362 4.273969 CCACTGCATGCAAAAGTCAAAATT 59.726 37.500 22.88 0.00 0.00 1.82
362 363 5.437263 CACTGCATGCAAAAGTCAAAATTC 58.563 37.500 22.88 0.00 0.00 2.17
363 364 5.006844 CACTGCATGCAAAAGTCAAAATTCA 59.993 36.000 22.88 0.00 0.00 2.57
364 365 5.585445 ACTGCATGCAAAAGTCAAAATTCAA 59.415 32.000 22.88 0.00 0.00 2.69
365 366 6.093771 ACTGCATGCAAAAGTCAAAATTCAAA 59.906 30.769 22.88 0.00 0.00 2.69
366 367 6.849502 TGCATGCAAAAGTCAAAATTCAAAA 58.150 28.000 20.30 0.00 0.00 2.44
367 368 7.481642 TGCATGCAAAAGTCAAAATTCAAAAT 58.518 26.923 20.30 0.00 0.00 1.82
368 369 7.974501 TGCATGCAAAAGTCAAAATTCAAAATT 59.025 25.926 20.30 0.00 0.00 1.82
516 517 3.740832 TGTAGAAGACACAAAGCACATCG 59.259 43.478 0.00 0.00 31.20 3.84
656 657 5.319453 AGTTCTTCCAGATCAAGATTTGCA 58.681 37.500 0.00 0.00 29.89 4.08
781 782 5.251764 CAACTCAGATATCAATGGGGATCC 58.748 45.833 1.92 1.92 0.00 3.36
789 790 1.152649 CAATGGGGATCCTAGCCCTT 58.847 55.000 12.58 0.92 45.30 3.95
825 826 4.811969 AAATGCATCATCTTCAAAGGCA 57.188 36.364 0.00 0.00 0.00 4.75
842 843 0.178767 GCATCCATGAAAAAGGGGGC 59.821 55.000 0.00 0.00 0.00 5.80
918 919 2.356022 CCATGACATGCTGAAGGGTACA 60.356 50.000 10.10 0.00 0.00 2.90
927 928 1.143329 TGAAGGGTACAATGGGGGCA 61.143 55.000 0.00 0.00 0.00 5.36
1004 1005 1.815421 GCGCGGATGTTCTGATGGT 60.815 57.895 8.83 0.00 0.00 3.55
1147 1148 0.461548 TGTGGCAACGGCAATTTTCA 59.538 45.000 0.00 0.00 43.71 2.69
1377 1379 1.585297 AAAAGCAAACCACTGCATGC 58.415 45.000 11.82 11.82 45.18 4.06
1378 1380 4.186136 AGCAAACCACTGCATGCT 57.814 50.000 20.33 4.41 45.18 3.79
1379 1381 1.663739 AGCAAACCACTGCATGCTG 59.336 52.632 21.60 21.60 46.66 4.41
1380 1382 2.025418 GCAAACCACTGCATGCTGC 61.025 57.895 22.92 16.17 45.29 5.25
1381 1383 1.373748 CAAACCACTGCATGCTGCC 60.374 57.895 22.92 0.00 44.23 4.85
1382 1384 2.576832 AAACCACTGCATGCTGCCC 61.577 57.895 22.92 0.00 44.23 5.36
1383 1385 3.518552 AACCACTGCATGCTGCCCT 62.519 57.895 22.92 2.46 44.23 5.19
1384 1386 2.141011 AACCACTGCATGCTGCCCTA 62.141 55.000 22.92 0.00 44.23 3.53
1385 1387 2.117156 CCACTGCATGCTGCCCTAC 61.117 63.158 22.92 0.00 44.23 3.18
1386 1388 1.377594 CACTGCATGCTGCCCTACA 60.378 57.895 22.92 0.00 44.23 2.74
1387 1389 0.750546 CACTGCATGCTGCCCTACAT 60.751 55.000 22.92 0.25 44.23 2.29
1388 1390 0.750546 ACTGCATGCTGCCCTACATG 60.751 55.000 22.92 0.00 44.23 3.21
1389 1391 1.452953 CTGCATGCTGCCCTACATGG 61.453 60.000 20.33 0.00 44.23 3.66
1418 1420 2.550978 GACATATGGTCCAACTGACGG 58.449 52.381 7.80 0.00 45.46 4.79
1419 1421 1.906574 ACATATGGTCCAACTGACGGT 59.093 47.619 7.80 0.00 45.46 4.83
1420 1422 2.279741 CATATGGTCCAACTGACGGTG 58.720 52.381 0.00 0.00 45.46 4.94
1421 1423 0.611200 TATGGTCCAACTGACGGTGG 59.389 55.000 0.00 0.00 45.46 4.61
1422 1424 2.032071 GGTCCAACTGACGGTGGG 59.968 66.667 0.67 0.67 45.46 4.61
1423 1425 2.668550 GTCCAACTGACGGTGGGC 60.669 66.667 2.48 0.00 38.90 5.36
1424 1426 3.948719 TCCAACTGACGGTGGGCC 61.949 66.667 2.48 0.00 38.90 5.80
1425 1427 4.263572 CCAACTGACGGTGGGCCA 62.264 66.667 0.00 0.00 31.35 5.36
1426 1428 2.203280 CAACTGACGGTGGGCCAA 60.203 61.111 8.40 0.00 34.09 4.52
1427 1429 2.113139 AACTGACGGTGGGCCAAG 59.887 61.111 8.40 8.47 34.09 3.61
1428 1430 4.643387 ACTGACGGTGGGCCAAGC 62.643 66.667 8.40 0.40 34.09 4.01
1429 1431 4.641645 CTGACGGTGGGCCAAGCA 62.642 66.667 8.40 7.42 34.09 3.91
1430 1432 4.641645 TGACGGTGGGCCAAGCAG 62.642 66.667 8.40 4.89 34.09 4.24
1431 1433 4.329545 GACGGTGGGCCAAGCAGA 62.330 66.667 8.40 0.00 34.09 4.26
1432 1434 4.643387 ACGGTGGGCCAAGCAGAC 62.643 66.667 8.40 0.00 34.09 3.51
1434 1436 4.284550 GGTGGGCCAAGCAGACCA 62.285 66.667 8.40 0.00 33.35 4.02
1435 1437 2.985847 GTGGGCCAAGCAGACCAC 60.986 66.667 8.40 10.30 45.56 4.16
1436 1438 3.177884 TGGGCCAAGCAGACCACT 61.178 61.111 2.13 0.00 0.00 4.00
1437 1439 2.674380 GGGCCAAGCAGACCACTG 60.674 66.667 4.39 0.00 45.91 3.66
1445 1447 2.875485 CAGACCACTGCATGCTGC 59.125 61.111 22.92 8.00 45.29 5.25
1446 1448 2.360852 AGACCACTGCATGCTGCC 60.361 61.111 22.92 10.71 44.23 4.85
1447 1449 3.446570 GACCACTGCATGCTGCCC 61.447 66.667 22.92 7.29 44.23 5.36
1468 1470 3.646715 CCCCCAGGTTGCTTCCGA 61.647 66.667 0.00 0.00 0.00 4.55
1469 1471 2.677228 CCCCAGGTTGCTTCCGAT 59.323 61.111 0.00 0.00 0.00 4.18
1470 1472 1.000896 CCCCAGGTTGCTTCCGATT 60.001 57.895 0.00 0.00 0.00 3.34
1471 1473 0.611896 CCCCAGGTTGCTTCCGATTT 60.612 55.000 0.00 0.00 0.00 2.17
1472 1474 0.527565 CCCAGGTTGCTTCCGATTTG 59.472 55.000 0.00 0.00 0.00 2.32
1473 1475 1.533625 CCAGGTTGCTTCCGATTTGA 58.466 50.000 0.00 0.00 0.00 2.69
1474 1476 1.470098 CCAGGTTGCTTCCGATTTGAG 59.530 52.381 0.00 0.00 0.00 3.02
1475 1477 2.426522 CAGGTTGCTTCCGATTTGAGA 58.573 47.619 0.00 0.00 0.00 3.27
1476 1478 2.417933 CAGGTTGCTTCCGATTTGAGAG 59.582 50.000 0.00 0.00 0.00 3.20
1477 1479 2.303022 AGGTTGCTTCCGATTTGAGAGA 59.697 45.455 0.00 0.00 0.00 3.10
1478 1480 3.074412 GGTTGCTTCCGATTTGAGAGAA 58.926 45.455 0.00 0.00 0.00 2.87
1479 1481 3.691609 GGTTGCTTCCGATTTGAGAGAAT 59.308 43.478 0.00 0.00 0.00 2.40
1480 1482 4.876107 GGTTGCTTCCGATTTGAGAGAATA 59.124 41.667 0.00 0.00 0.00 1.75
1481 1483 5.007136 GGTTGCTTCCGATTTGAGAGAATAG 59.993 44.000 0.00 0.00 0.00 1.73
1482 1484 5.598416 TGCTTCCGATTTGAGAGAATAGA 57.402 39.130 0.00 0.00 0.00 1.98
1483 1485 5.352284 TGCTTCCGATTTGAGAGAATAGAC 58.648 41.667 0.00 0.00 0.00 2.59
1484 1486 5.105351 TGCTTCCGATTTGAGAGAATAGACA 60.105 40.000 0.00 0.00 0.00 3.41
1485 1487 5.988561 GCTTCCGATTTGAGAGAATAGACAT 59.011 40.000 0.00 0.00 0.00 3.06
1486 1488 6.073873 GCTTCCGATTTGAGAGAATAGACATG 60.074 42.308 0.00 0.00 0.00 3.21
1487 1489 5.292765 TCCGATTTGAGAGAATAGACATGC 58.707 41.667 0.00 0.00 0.00 4.06
1488 1490 4.149571 CCGATTTGAGAGAATAGACATGCG 59.850 45.833 0.00 0.00 0.00 4.73
1489 1491 4.149571 CGATTTGAGAGAATAGACATGCGG 59.850 45.833 0.00 0.00 0.00 5.69
1490 1492 4.736126 TTTGAGAGAATAGACATGCGGA 57.264 40.909 0.00 0.00 0.00 5.54
1491 1493 4.944619 TTGAGAGAATAGACATGCGGAT 57.055 40.909 0.00 0.00 0.00 4.18
1492 1494 4.944619 TGAGAGAATAGACATGCGGATT 57.055 40.909 0.00 0.00 0.00 3.01
1493 1495 4.625028 TGAGAGAATAGACATGCGGATTG 58.375 43.478 0.00 0.00 0.00 2.67
1494 1496 3.993081 GAGAGAATAGACATGCGGATTGG 59.007 47.826 0.00 0.00 0.00 3.16
1495 1497 3.389329 AGAGAATAGACATGCGGATTGGT 59.611 43.478 0.00 0.00 0.00 3.67
1496 1498 3.733337 AGAATAGACATGCGGATTGGTC 58.267 45.455 0.00 0.00 0.00 4.02
1497 1499 2.550830 ATAGACATGCGGATTGGTCC 57.449 50.000 4.13 0.00 41.40 4.46
1498 1500 1.496060 TAGACATGCGGATTGGTCCT 58.504 50.000 4.13 0.00 42.73 3.85
1499 1501 0.179000 AGACATGCGGATTGGTCCTC 59.821 55.000 4.13 0.00 42.73 3.71
1500 1502 0.107703 GACATGCGGATTGGTCCTCA 60.108 55.000 0.00 0.00 43.02 3.86
1501 1503 0.107508 ACATGCGGATTGGTCCTCAG 60.108 55.000 0.00 0.00 42.19 3.35
1502 1504 0.178767 CATGCGGATTGGTCCTCAGA 59.821 55.000 0.00 0.00 42.19 3.27
1503 1505 0.179000 ATGCGGATTGGTCCTCAGAC 59.821 55.000 0.00 0.00 42.19 3.51
1504 1506 1.519455 GCGGATTGGTCCTCAGACG 60.519 63.158 0.00 0.00 44.54 4.18
1505 1507 1.890894 CGGATTGGTCCTCAGACGT 59.109 57.895 0.00 0.00 44.54 4.34
1506 1508 0.246635 CGGATTGGTCCTCAGACGTT 59.753 55.000 0.00 0.00 44.54 3.99
1507 1509 1.736032 CGGATTGGTCCTCAGACGTTC 60.736 57.143 0.00 0.00 44.54 3.95
1508 1510 1.405661 GGATTGGTCCTCAGACGTTCC 60.406 57.143 0.00 0.00 44.54 3.62
1509 1511 0.246635 ATTGGTCCTCAGACGTTCCG 59.753 55.000 0.00 0.00 44.54 4.30
1510 1512 1.111116 TTGGTCCTCAGACGTTCCGT 61.111 55.000 0.00 0.00 44.54 4.69
1511 1513 1.111116 TGGTCCTCAGACGTTCCGTT 61.111 55.000 0.00 0.00 44.54 4.44
1512 1514 0.033090 GGTCCTCAGACGTTCCGTTT 59.967 55.000 0.00 0.00 44.54 3.60
1513 1515 1.270550 GGTCCTCAGACGTTCCGTTTA 59.729 52.381 0.00 0.00 44.54 2.01
1514 1516 2.593257 GTCCTCAGACGTTCCGTTTAG 58.407 52.381 0.00 0.00 41.37 1.85
1515 1517 1.542915 TCCTCAGACGTTCCGTTTAGG 59.457 52.381 0.00 6.64 41.37 2.69
1516 1518 1.403780 CCTCAGACGTTCCGTTTAGGG 60.404 57.143 0.00 0.00 41.37 3.53
1517 1519 0.604578 TCAGACGTTCCGTTTAGGGG 59.395 55.000 0.00 0.00 41.37 4.79
1518 1520 0.319405 CAGACGTTCCGTTTAGGGGT 59.681 55.000 0.00 0.00 41.37 4.95
1519 1521 0.605083 AGACGTTCCGTTTAGGGGTC 59.395 55.000 0.00 0.00 41.37 4.46
1520 1522 0.390340 GACGTTCCGTTTAGGGGTCC 60.390 60.000 0.00 0.00 41.37 4.46
1521 1523 1.078918 CGTTCCGTTTAGGGGTCCC 60.079 63.158 0.00 0.00 41.52 4.46
1522 1524 1.300963 GTTCCGTTTAGGGGTCCCC 59.699 63.158 20.85 20.85 45.90 4.81
1537 1539 1.904287 TCCCCGTTGGATGACAAAAG 58.096 50.000 0.00 0.00 41.58 2.27
1538 1540 1.144093 TCCCCGTTGGATGACAAAAGT 59.856 47.619 0.00 0.00 41.58 2.66
1539 1541 1.269448 CCCCGTTGGATGACAAAAGTG 59.731 52.381 0.00 0.00 41.58 3.16
1540 1542 1.269448 CCCGTTGGATGACAAAAGTGG 59.731 52.381 0.00 0.00 41.58 4.00
1541 1543 1.953686 CCGTTGGATGACAAAAGTGGT 59.046 47.619 0.00 0.00 41.58 4.16
1542 1544 2.031157 CCGTTGGATGACAAAAGTGGTC 60.031 50.000 0.00 0.00 41.58 4.02
1543 1545 2.031157 CGTTGGATGACAAAAGTGGTCC 60.031 50.000 0.00 0.00 41.58 4.46
1544 1546 1.890876 TGGATGACAAAAGTGGTCCG 58.109 50.000 0.00 0.00 34.36 4.79
1545 1547 1.165270 GGATGACAAAAGTGGTCCGG 58.835 55.000 0.00 0.00 34.36 5.14
1546 1548 1.271163 GGATGACAAAAGTGGTCCGGA 60.271 52.381 0.00 0.00 34.36 5.14
1547 1549 1.804748 GATGACAAAAGTGGTCCGGAC 59.195 52.381 27.04 27.04 34.36 4.79
1548 1550 0.542333 TGACAAAAGTGGTCCGGACA 59.458 50.000 34.40 18.59 34.36 4.02
1549 1551 0.942252 GACAAAAGTGGTCCGGACAC 59.058 55.000 34.40 27.41 39.10 3.67
1550 1552 0.464916 ACAAAAGTGGTCCGGACACC 60.465 55.000 34.40 23.38 39.63 4.16
1551 1553 0.464735 CAAAAGTGGTCCGGACACCA 60.465 55.000 34.40 23.13 44.69 4.17
1555 1557 4.145436 TGGTCCGGACACCATGAT 57.855 55.556 34.40 0.00 41.84 2.45
1556 1558 3.308626 TGGTCCGGACACCATGATA 57.691 52.632 34.40 8.22 41.84 2.15
1557 1559 0.828022 TGGTCCGGACACCATGATAC 59.172 55.000 34.40 15.06 41.84 2.24
1558 1560 0.828022 GGTCCGGACACCATGATACA 59.172 55.000 34.40 0.00 36.32 2.29
1559 1561 1.202533 GGTCCGGACACCATGATACAG 60.203 57.143 34.40 0.00 36.32 2.74
1560 1562 1.754803 GTCCGGACACCATGATACAGA 59.245 52.381 29.75 0.00 0.00 3.41
1561 1563 2.031870 TCCGGACACCATGATACAGAG 58.968 52.381 0.00 0.00 0.00 3.35
1562 1564 2.031870 CCGGACACCATGATACAGAGA 58.968 52.381 0.00 0.00 0.00 3.10
1563 1565 2.035193 CCGGACACCATGATACAGAGAG 59.965 54.545 0.00 0.00 0.00 3.20
1564 1566 2.690497 CGGACACCATGATACAGAGAGT 59.310 50.000 0.00 0.00 0.00 3.24
1565 1567 3.243234 CGGACACCATGATACAGAGAGTC 60.243 52.174 0.00 0.00 0.00 3.36
1566 1568 3.957497 GGACACCATGATACAGAGAGTCT 59.043 47.826 0.00 0.00 0.00 3.24
1579 1581 5.793026 CAGAGAGTCTGGTTTAAAGATGC 57.207 43.478 0.00 0.00 40.71 3.91
1580 1582 4.633565 CAGAGAGTCTGGTTTAAAGATGCC 59.366 45.833 0.00 0.00 40.71 4.40
1581 1583 4.287067 AGAGAGTCTGGTTTAAAGATGCCA 59.713 41.667 0.00 0.00 0.00 4.92
1582 1584 5.045286 AGAGAGTCTGGTTTAAAGATGCCAT 60.045 40.000 0.00 0.00 0.00 4.40
1583 1585 5.574188 AGAGTCTGGTTTAAAGATGCCATT 58.426 37.500 0.00 0.00 0.00 3.16
1584 1586 6.721318 AGAGTCTGGTTTAAAGATGCCATTA 58.279 36.000 0.00 0.00 0.00 1.90
1585 1587 7.175104 AGAGTCTGGTTTAAAGATGCCATTAA 58.825 34.615 0.00 0.00 0.00 1.40
1586 1588 7.121315 AGAGTCTGGTTTAAAGATGCCATTAAC 59.879 37.037 0.00 0.00 0.00 2.01
1587 1589 6.948309 AGTCTGGTTTAAAGATGCCATTAACT 59.052 34.615 0.00 0.00 0.00 2.24
1588 1590 7.029563 GTCTGGTTTAAAGATGCCATTAACTG 58.970 38.462 0.00 0.00 0.00 3.16
1589 1591 6.945435 TCTGGTTTAAAGATGCCATTAACTGA 59.055 34.615 0.00 0.00 0.00 3.41
1590 1592 7.450014 TCTGGTTTAAAGATGCCATTAACTGAA 59.550 33.333 0.00 0.00 0.00 3.02
1591 1593 7.375053 TGGTTTAAAGATGCCATTAACTGAAC 58.625 34.615 0.00 0.00 0.00 3.18
1700 1702 3.376935 CTTGGCCAGGTCGCTCGAT 62.377 63.158 5.11 0.00 0.00 3.59
1856 1877 2.285368 AGCTCCCGTCCCATCCAA 60.285 61.111 0.00 0.00 0.00 3.53
1865 1886 2.203015 CCCATCCAAGCCGTACGG 60.203 66.667 30.06 30.06 38.57 4.02
1991 2012 3.112075 CGACGTGGCGACATTGCT 61.112 61.111 0.00 0.00 46.14 3.91
2014 2035 1.301087 CCGTCACCACTAACGCCAA 60.301 57.895 0.00 0.00 37.56 4.52
2066 2089 2.752238 CTCGACTCGGCCACTCCT 60.752 66.667 2.24 0.00 0.00 3.69
2186 2210 3.077556 CCCAGGCGCTGACTACCT 61.078 66.667 7.64 0.00 32.44 3.08
2213 2237 3.594603 ACAGTCATGTAGCACTACCAC 57.405 47.619 5.40 0.57 38.09 4.16
2320 2362 3.646637 ACTAGCCACCAAACAGTAGAACT 59.353 43.478 0.00 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 8.903820 CGTCTCATTAATAAAGAAGGGGAAAAT 58.096 33.333 2.22 0.00 0.00 1.82
6 7 8.104566 TCGTCTCATTAATAAAGAAGGGGAAAA 58.895 33.333 10.80 0.00 0.00 2.29
7 8 7.626390 TCGTCTCATTAATAAAGAAGGGGAAA 58.374 34.615 10.80 0.00 0.00 3.13
8 9 7.190335 TCGTCTCATTAATAAAGAAGGGGAA 57.810 36.000 10.80 0.00 0.00 3.97
9 10 6.183360 CCTCGTCTCATTAATAAAGAAGGGGA 60.183 42.308 19.06 7.82 40.40 4.81
10 11 5.992217 CCTCGTCTCATTAATAAAGAAGGGG 59.008 44.000 13.73 13.73 33.74 4.79
11 12 5.467063 GCCTCGTCTCATTAATAAAGAAGGG 59.533 44.000 14.11 10.49 0.00 3.95
12 13 6.049149 TGCCTCGTCTCATTAATAAAGAAGG 58.951 40.000 10.66 10.66 0.00 3.46
13 14 7.539712 TTGCCTCGTCTCATTAATAAAGAAG 57.460 36.000 2.22 4.62 0.00 2.85
14 15 7.606456 ACTTTGCCTCGTCTCATTAATAAAGAA 59.394 33.333 0.00 0.00 0.00 2.52
15 16 7.103641 ACTTTGCCTCGTCTCATTAATAAAGA 58.896 34.615 0.00 2.50 0.00 2.52
16 17 7.308782 ACTTTGCCTCGTCTCATTAATAAAG 57.691 36.000 0.00 0.00 0.00 1.85
17 18 7.681939 AACTTTGCCTCGTCTCATTAATAAA 57.318 32.000 0.00 0.00 0.00 1.40
18 19 7.681939 AAACTTTGCCTCGTCTCATTAATAA 57.318 32.000 0.00 0.00 0.00 1.40
19 20 7.681939 AAAACTTTGCCTCGTCTCATTAATA 57.318 32.000 0.00 0.00 0.00 0.98
20 21 6.575162 AAAACTTTGCCTCGTCTCATTAAT 57.425 33.333 0.00 0.00 0.00 1.40
21 22 6.205784 CAAAAACTTTGCCTCGTCTCATTAA 58.794 36.000 0.00 0.00 0.00 1.40
22 23 5.757886 CAAAAACTTTGCCTCGTCTCATTA 58.242 37.500 0.00 0.00 0.00 1.90
23 24 4.610945 CAAAAACTTTGCCTCGTCTCATT 58.389 39.130 0.00 0.00 0.00 2.57
24 25 3.550842 GCAAAAACTTTGCCTCGTCTCAT 60.551 43.478 12.10 0.00 39.38 2.90
25 26 2.223479 GCAAAAACTTTGCCTCGTCTCA 60.223 45.455 12.10 0.00 39.38 3.27
26 27 2.385315 GCAAAAACTTTGCCTCGTCTC 58.615 47.619 12.10 0.00 39.38 3.36
27 28 2.492019 GCAAAAACTTTGCCTCGTCT 57.508 45.000 12.10 0.00 39.38 4.18
34 35 1.934589 AACGGAGGCAAAAACTTTGC 58.065 45.000 14.30 14.30 44.22 3.68
35 36 6.410243 TTTTTAACGGAGGCAAAAACTTTG 57.590 33.333 0.00 0.00 32.25 2.77
57 58 7.324178 AGTTGACTATCTCTAGCGATGTTTTT 58.676 34.615 5.45 0.00 0.00 1.94
58 59 6.868622 AGTTGACTATCTCTAGCGATGTTTT 58.131 36.000 5.45 0.00 0.00 2.43
59 60 6.458232 AGTTGACTATCTCTAGCGATGTTT 57.542 37.500 5.45 0.00 0.00 2.83
60 61 6.993308 TCTAGTTGACTATCTCTAGCGATGTT 59.007 38.462 5.45 0.00 32.53 2.71
61 62 6.526526 TCTAGTTGACTATCTCTAGCGATGT 58.473 40.000 5.45 2.11 32.53 3.06
62 63 7.386573 TCTTCTAGTTGACTATCTCTAGCGATG 59.613 40.741 5.45 0.00 32.53 3.84
63 64 7.446769 TCTTCTAGTTGACTATCTCTAGCGAT 58.553 38.462 0.12 0.12 32.53 4.58
64 65 6.818233 TCTTCTAGTTGACTATCTCTAGCGA 58.182 40.000 0.00 0.00 32.53 4.93
65 66 7.485418 TTCTTCTAGTTGACTATCTCTAGCG 57.515 40.000 0.00 0.00 32.53 4.26
66 67 9.677567 CAATTCTTCTAGTTGACTATCTCTAGC 57.322 37.037 0.00 0.00 32.53 3.42
68 69 9.702253 ACCAATTCTTCTAGTTGACTATCTCTA 57.298 33.333 0.00 0.00 0.00 2.43
69 70 8.602472 ACCAATTCTTCTAGTTGACTATCTCT 57.398 34.615 0.00 0.00 0.00 3.10
75 76 9.793259 TTTTCATACCAATTCTTCTAGTTGACT 57.207 29.630 0.00 0.00 0.00 3.41
83 84 9.454859 CCTCTACTTTTTCATACCAATTCTTCT 57.545 33.333 0.00 0.00 0.00 2.85
84 85 9.232473 ACCTCTACTTTTTCATACCAATTCTTC 57.768 33.333 0.00 0.00 0.00 2.87
89 90 9.462606 CCTTTACCTCTACTTTTTCATACCAAT 57.537 33.333 0.00 0.00 0.00 3.16
90 91 7.392393 GCCTTTACCTCTACTTTTTCATACCAA 59.608 37.037 0.00 0.00 0.00 3.67
91 92 6.882678 GCCTTTACCTCTACTTTTTCATACCA 59.117 38.462 0.00 0.00 0.00 3.25
92 93 6.882678 TGCCTTTACCTCTACTTTTTCATACC 59.117 38.462 0.00 0.00 0.00 2.73
93 94 7.916914 TGCCTTTACCTCTACTTTTTCATAC 57.083 36.000 0.00 0.00 0.00 2.39
95 96 9.700831 AATATGCCTTTACCTCTACTTTTTCAT 57.299 29.630 0.00 0.00 0.00 2.57
96 97 9.528489 AAATATGCCTTTACCTCTACTTTTTCA 57.472 29.630 0.00 0.00 0.00 2.69
99 100 9.628500 CCTAAATATGCCTTTACCTCTACTTTT 57.372 33.333 0.00 0.00 0.00 2.27
100 101 8.779031 ACCTAAATATGCCTTTACCTCTACTTT 58.221 33.333 0.00 0.00 0.00 2.66
101 102 8.333226 ACCTAAATATGCCTTTACCTCTACTT 57.667 34.615 0.00 0.00 0.00 2.24
102 103 7.567622 TGACCTAAATATGCCTTTACCTCTACT 59.432 37.037 0.00 0.00 0.00 2.57
103 104 7.732996 TGACCTAAATATGCCTTTACCTCTAC 58.267 38.462 0.00 0.00 0.00 2.59
104 105 7.924358 TGACCTAAATATGCCTTTACCTCTA 57.076 36.000 0.00 0.00 0.00 2.43
105 106 6.824958 TGACCTAAATATGCCTTTACCTCT 57.175 37.500 0.00 0.00 0.00 3.69
106 107 7.454225 AGATGACCTAAATATGCCTTTACCTC 58.546 38.462 0.00 0.00 0.00 3.85
107 108 7.394144 AGATGACCTAAATATGCCTTTACCT 57.606 36.000 0.00 0.00 0.00 3.08
108 109 6.369065 CGAGATGACCTAAATATGCCTTTACC 59.631 42.308 0.00 0.00 0.00 2.85
109 110 7.152645 TCGAGATGACCTAAATATGCCTTTAC 58.847 38.462 0.00 0.00 0.00 2.01
110 111 7.297936 TCGAGATGACCTAAATATGCCTTTA 57.702 36.000 0.00 0.00 0.00 1.85
111 112 6.174720 TCGAGATGACCTAAATATGCCTTT 57.825 37.500 0.00 0.00 0.00 3.11
112 113 5.808366 TCGAGATGACCTAAATATGCCTT 57.192 39.130 0.00 0.00 0.00 4.35
113 114 5.542779 GTTCGAGATGACCTAAATATGCCT 58.457 41.667 0.00 0.00 0.00 4.75
114 115 4.386049 CGTTCGAGATGACCTAAATATGCC 59.614 45.833 0.00 0.00 0.00 4.40
115 116 4.143305 GCGTTCGAGATGACCTAAATATGC 60.143 45.833 0.00 0.00 0.00 3.14
116 117 5.223382 AGCGTTCGAGATGACCTAAATATG 58.777 41.667 0.00 0.00 0.00 1.78
117 118 5.455056 AGCGTTCGAGATGACCTAAATAT 57.545 39.130 0.00 0.00 0.00 1.28
118 119 4.913335 AGCGTTCGAGATGACCTAAATA 57.087 40.909 0.00 0.00 0.00 1.40
119 120 3.802948 AGCGTTCGAGATGACCTAAAT 57.197 42.857 0.00 0.00 0.00 1.40
120 121 3.181493 GGTAGCGTTCGAGATGACCTAAA 60.181 47.826 0.00 0.00 0.00 1.85
121 122 2.357009 GGTAGCGTTCGAGATGACCTAA 59.643 50.000 0.00 0.00 0.00 2.69
122 123 1.945394 GGTAGCGTTCGAGATGACCTA 59.055 52.381 0.00 0.00 0.00 3.08
123 124 0.739561 GGTAGCGTTCGAGATGACCT 59.260 55.000 0.00 0.00 0.00 3.85
124 125 0.248949 GGGTAGCGTTCGAGATGACC 60.249 60.000 0.00 0.00 0.00 4.02
125 126 0.739561 AGGGTAGCGTTCGAGATGAC 59.260 55.000 0.00 0.00 0.00 3.06
126 127 1.471119 AAGGGTAGCGTTCGAGATGA 58.529 50.000 0.00 0.00 0.00 2.92
127 128 2.295253 AAAGGGTAGCGTTCGAGATG 57.705 50.000 0.00 0.00 0.00 2.90
128 129 4.460948 TTTAAAGGGTAGCGTTCGAGAT 57.539 40.909 0.00 0.00 0.00 2.75
129 130 3.940209 TTTAAAGGGTAGCGTTCGAGA 57.060 42.857 0.00 0.00 0.00 4.04
130 131 3.742369 TGTTTTAAAGGGTAGCGTTCGAG 59.258 43.478 0.00 0.00 0.00 4.04
131 132 3.726607 TGTTTTAAAGGGTAGCGTTCGA 58.273 40.909 0.00 0.00 0.00 3.71
132 133 3.742369 TCTGTTTTAAAGGGTAGCGTTCG 59.258 43.478 0.00 0.00 0.00 3.95
133 134 4.512571 TGTCTGTTTTAAAGGGTAGCGTTC 59.487 41.667 0.00 0.00 0.00 3.95
134 135 4.274214 GTGTCTGTTTTAAAGGGTAGCGTT 59.726 41.667 0.00 0.00 0.00 4.84
135 136 3.811497 GTGTCTGTTTTAAAGGGTAGCGT 59.189 43.478 0.00 0.00 0.00 5.07
136 137 3.810941 TGTGTCTGTTTTAAAGGGTAGCG 59.189 43.478 0.00 0.00 0.00 4.26
137 138 4.820173 AGTGTGTCTGTTTTAAAGGGTAGC 59.180 41.667 0.00 0.00 0.00 3.58
138 139 7.333672 GGATAGTGTGTCTGTTTTAAAGGGTAG 59.666 40.741 0.00 0.00 0.00 3.18
139 140 7.163441 GGATAGTGTGTCTGTTTTAAAGGGTA 58.837 38.462 0.00 0.00 0.00 3.69
140 141 6.002082 GGATAGTGTGTCTGTTTTAAAGGGT 58.998 40.000 0.00 0.00 0.00 4.34
141 142 5.121768 CGGATAGTGTGTCTGTTTTAAAGGG 59.878 44.000 0.00 0.00 0.00 3.95
142 143 5.699458 ACGGATAGTGTGTCTGTTTTAAAGG 59.301 40.000 0.00 0.00 31.28 3.11
143 144 6.128634 GGACGGATAGTGTGTCTGTTTTAAAG 60.129 42.308 0.00 0.00 35.41 1.85
144 145 5.697633 GGACGGATAGTGTGTCTGTTTTAAA 59.302 40.000 0.00 0.00 35.41 1.52
145 146 5.221481 TGGACGGATAGTGTGTCTGTTTTAA 60.221 40.000 0.00 0.00 35.41 1.52
146 147 4.281435 TGGACGGATAGTGTGTCTGTTTTA 59.719 41.667 0.00 0.00 35.41 1.52
147 148 3.070446 TGGACGGATAGTGTGTCTGTTTT 59.930 43.478 0.00 0.00 35.41 2.43
148 149 2.631062 TGGACGGATAGTGTGTCTGTTT 59.369 45.455 0.00 0.00 35.41 2.83
149 150 2.244695 TGGACGGATAGTGTGTCTGTT 58.755 47.619 0.00 0.00 35.41 3.16
150 151 1.919240 TGGACGGATAGTGTGTCTGT 58.081 50.000 0.00 0.00 37.88 3.41
151 152 2.481969 CCATGGACGGATAGTGTGTCTG 60.482 54.545 5.56 0.00 33.21 3.51
152 153 1.757118 CCATGGACGGATAGTGTGTCT 59.243 52.381 5.56 0.00 33.21 3.41
153 154 1.754803 TCCATGGACGGATAGTGTGTC 59.245 52.381 11.44 0.00 0.00 3.67
154 155 1.480954 GTCCATGGACGGATAGTGTGT 59.519 52.381 28.52 0.00 37.41 3.72
155 156 1.202533 GGTCCATGGACGGATAGTGTG 60.203 57.143 33.24 0.00 45.41 3.82
156 157 1.120530 GGTCCATGGACGGATAGTGT 58.879 55.000 33.24 0.00 45.41 3.55
157 158 0.032130 CGGTCCATGGACGGATAGTG 59.968 60.000 36.77 18.12 44.73 2.74
158 159 1.745320 GCGGTCCATGGACGGATAGT 61.745 60.000 41.23 0.00 44.73 2.12
159 160 1.006102 GCGGTCCATGGACGGATAG 60.006 63.158 41.23 27.54 44.73 2.08
160 161 2.852180 CGCGGTCCATGGACGGATA 61.852 63.158 41.23 10.42 44.73 2.59
161 162 4.221422 CGCGGTCCATGGACGGAT 62.221 66.667 41.23 0.00 44.73 4.18
186 187 0.928908 CGTATACTGTGAGCGGACGC 60.929 60.000 8.91 8.91 42.33 5.19
187 188 0.654160 TCGTATACTGTGAGCGGACG 59.346 55.000 0.56 0.00 0.00 4.79
188 189 1.938577 TCTCGTATACTGTGAGCGGAC 59.061 52.381 0.56 0.00 0.00 4.79
189 190 2.210961 CTCTCGTATACTGTGAGCGGA 58.789 52.381 0.56 0.00 0.00 5.54
190 191 1.941294 ACTCTCGTATACTGTGAGCGG 59.059 52.381 18.24 9.88 31.79 5.52
191 192 2.347753 CGACTCTCGTATACTGTGAGCG 60.348 54.545 18.24 17.66 34.72 5.03
192 193 2.032722 CCGACTCTCGTATACTGTGAGC 60.033 54.545 18.24 13.21 38.40 4.26
193 194 3.196463 ACCGACTCTCGTATACTGTGAG 58.804 50.000 17.41 17.41 38.40 3.51
194 195 3.193263 GACCGACTCTCGTATACTGTGA 58.807 50.000 0.56 1.19 38.40 3.58
195 196 2.934553 TGACCGACTCTCGTATACTGTG 59.065 50.000 0.56 0.00 38.40 3.66
196 197 3.257469 TGACCGACTCTCGTATACTGT 57.743 47.619 0.56 0.00 38.40 3.55
197 198 3.186817 GGATGACCGACTCTCGTATACTG 59.813 52.174 0.56 0.00 38.40 2.74
198 199 3.181457 TGGATGACCGACTCTCGTATACT 60.181 47.826 0.56 0.00 38.40 2.12
199 200 3.136763 TGGATGACCGACTCTCGTATAC 58.863 50.000 0.00 0.00 38.40 1.47
200 201 3.480505 TGGATGACCGACTCTCGTATA 57.519 47.619 0.00 0.00 38.40 1.47
201 202 2.343484 TGGATGACCGACTCTCGTAT 57.657 50.000 0.00 0.00 38.40 3.06
202 203 1.741706 GTTGGATGACCGACTCTCGTA 59.258 52.381 0.00 0.00 44.81 3.43
203 204 0.526662 GTTGGATGACCGACTCTCGT 59.473 55.000 0.00 0.00 44.81 4.18
204 205 0.179134 GGTTGGATGACCGACTCTCG 60.179 60.000 0.00 0.00 46.77 4.04
205 206 0.895530 TGGTTGGATGACCGACTCTC 59.104 55.000 0.00 0.00 46.77 3.20
206 207 1.208052 CATGGTTGGATGACCGACTCT 59.792 52.381 0.00 0.00 46.77 3.24
207 208 1.656652 CATGGTTGGATGACCGACTC 58.343 55.000 0.00 0.00 46.77 3.36
208 209 0.392998 GCATGGTTGGATGACCGACT 60.393 55.000 0.00 0.00 46.77 4.18
209 210 1.376609 GGCATGGTTGGATGACCGAC 61.377 60.000 0.00 0.00 46.85 4.79
210 211 1.077787 GGCATGGTTGGATGACCGA 60.078 57.895 0.00 0.00 42.83 4.69
211 212 2.120909 GGGCATGGTTGGATGACCG 61.121 63.158 0.00 0.00 41.83 4.79
212 213 3.939564 GGGCATGGTTGGATGACC 58.060 61.111 0.00 0.00 44.50 4.02
213 214 0.324645 AAGGGGCATGGTTGGATGAC 60.325 55.000 0.00 0.00 0.00 3.06
214 215 1.303898 TAAGGGGCATGGTTGGATGA 58.696 50.000 0.00 0.00 0.00 2.92
215 216 2.157640 TTAAGGGGCATGGTTGGATG 57.842 50.000 0.00 0.00 0.00 3.51
216 217 2.938428 TTTAAGGGGCATGGTTGGAT 57.062 45.000 0.00 0.00 0.00 3.41
217 218 2.938428 ATTTAAGGGGCATGGTTGGA 57.062 45.000 0.00 0.00 0.00 3.53
218 219 2.965147 CCTATTTAAGGGGCATGGTTGG 59.035 50.000 0.00 0.00 42.32 3.77
219 220 2.365293 GCCTATTTAAGGGGCATGGTTG 59.635 50.000 9.54 0.00 46.65 3.77
220 221 2.677914 GCCTATTTAAGGGGCATGGTT 58.322 47.619 9.54 0.00 46.65 3.67
221 222 2.381752 GCCTATTTAAGGGGCATGGT 57.618 50.000 9.54 0.00 46.65 3.55
226 227 4.835056 AGATTTGATGCCTATTTAAGGGGC 59.165 41.667 8.02 8.02 46.65 5.80
227 228 5.244626 CCAGATTTGATGCCTATTTAAGGGG 59.755 44.000 0.00 0.00 46.65 4.79
228 229 6.015940 GTCCAGATTTGATGCCTATTTAAGGG 60.016 42.308 0.00 0.00 46.65 3.95
230 231 6.260936 ACGTCCAGATTTGATGCCTATTTAAG 59.739 38.462 0.00 0.00 0.00 1.85
231 232 6.119536 ACGTCCAGATTTGATGCCTATTTAA 58.880 36.000 0.00 0.00 0.00 1.52
232 233 5.680619 ACGTCCAGATTTGATGCCTATTTA 58.319 37.500 0.00 0.00 0.00 1.40
233 234 4.526970 ACGTCCAGATTTGATGCCTATTT 58.473 39.130 0.00 0.00 0.00 1.40
234 235 4.156455 ACGTCCAGATTTGATGCCTATT 57.844 40.909 0.00 0.00 0.00 1.73
235 236 3.845781 ACGTCCAGATTTGATGCCTAT 57.154 42.857 0.00 0.00 0.00 2.57
236 237 3.627395 AACGTCCAGATTTGATGCCTA 57.373 42.857 0.00 0.00 0.00 3.93
237 238 2.496899 AACGTCCAGATTTGATGCCT 57.503 45.000 0.00 0.00 0.00 4.75
238 239 3.531538 TCTAACGTCCAGATTTGATGCC 58.468 45.455 0.00 0.00 0.00 4.40
239 240 3.557595 CCTCTAACGTCCAGATTTGATGC 59.442 47.826 0.00 0.00 0.00 3.91
240 241 4.568359 CACCTCTAACGTCCAGATTTGATG 59.432 45.833 0.00 0.00 0.00 3.07
241 242 4.383118 CCACCTCTAACGTCCAGATTTGAT 60.383 45.833 0.00 0.00 0.00 2.57
242 243 3.056107 CCACCTCTAACGTCCAGATTTGA 60.056 47.826 0.00 0.00 0.00 2.69
243 244 3.262420 CCACCTCTAACGTCCAGATTTG 58.738 50.000 0.00 0.00 0.00 2.32
244 245 2.236395 CCCACCTCTAACGTCCAGATTT 59.764 50.000 0.00 0.00 0.00 2.17
245 246 1.831736 CCCACCTCTAACGTCCAGATT 59.168 52.381 0.00 0.00 0.00 2.40
246 247 1.486211 CCCACCTCTAACGTCCAGAT 58.514 55.000 0.00 0.00 0.00 2.90
247 248 1.255667 GCCCACCTCTAACGTCCAGA 61.256 60.000 0.00 0.00 0.00 3.86
248 249 1.218316 GCCCACCTCTAACGTCCAG 59.782 63.158 0.00 0.00 0.00 3.86
249 250 2.288025 GGCCCACCTCTAACGTCCA 61.288 63.158 0.00 0.00 0.00 4.02
250 251 2.240162 CTGGCCCACCTCTAACGTCC 62.240 65.000 0.00 0.00 36.63 4.79
251 252 1.218316 CTGGCCCACCTCTAACGTC 59.782 63.158 0.00 0.00 36.63 4.34
252 253 2.291043 CCTGGCCCACCTCTAACGT 61.291 63.158 0.00 0.00 36.63 3.99
253 254 2.584608 CCTGGCCCACCTCTAACG 59.415 66.667 0.00 0.00 36.63 3.18
254 255 2.272471 GCCTGGCCCACCTCTAAC 59.728 66.667 7.66 0.00 36.63 2.34
255 256 3.399181 CGCCTGGCCCACCTCTAA 61.399 66.667 14.12 0.00 36.63 2.10
267 268 4.208686 GTCCTCTACGCCCGCCTG 62.209 72.222 0.00 0.00 0.00 4.85
268 269 4.753662 TGTCCTCTACGCCCGCCT 62.754 66.667 0.00 0.00 0.00 5.52
269 270 3.305177 TTTGTCCTCTACGCCCGCC 62.305 63.158 0.00 0.00 0.00 6.13
270 271 1.810030 CTTTGTCCTCTACGCCCGC 60.810 63.158 0.00 0.00 0.00 6.13
271 272 1.810030 GCTTTGTCCTCTACGCCCG 60.810 63.158 0.00 0.00 0.00 6.13
272 273 1.019805 GTGCTTTGTCCTCTACGCCC 61.020 60.000 0.00 0.00 0.00 6.13
273 274 0.320421 TGTGCTTTGTCCTCTACGCC 60.320 55.000 0.00 0.00 0.00 5.68
274 275 1.394917 CATGTGCTTTGTCCTCTACGC 59.605 52.381 0.00 0.00 0.00 4.42
275 276 2.002586 CCATGTGCTTTGTCCTCTACG 58.997 52.381 0.00 0.00 0.00 3.51
276 277 2.290323 ACCCATGTGCTTTGTCCTCTAC 60.290 50.000 0.00 0.00 0.00 2.59
277 278 1.985159 ACCCATGTGCTTTGTCCTCTA 59.015 47.619 0.00 0.00 0.00 2.43
278 279 0.773644 ACCCATGTGCTTTGTCCTCT 59.226 50.000 0.00 0.00 0.00 3.69
279 280 1.270550 CAACCCATGTGCTTTGTCCTC 59.729 52.381 0.00 0.00 0.00 3.71
280 281 1.133513 TCAACCCATGTGCTTTGTCCT 60.134 47.619 0.00 0.00 0.00 3.85
281 282 1.270550 CTCAACCCATGTGCTTTGTCC 59.729 52.381 0.00 0.00 0.00 4.02
282 283 2.227388 CTCTCAACCCATGTGCTTTGTC 59.773 50.000 0.00 0.00 0.00 3.18
283 284 2.233271 CTCTCAACCCATGTGCTTTGT 58.767 47.619 0.00 0.00 0.00 2.83
284 285 1.542915 CCTCTCAACCCATGTGCTTTG 59.457 52.381 0.00 0.00 0.00 2.77
285 286 1.425066 TCCTCTCAACCCATGTGCTTT 59.575 47.619 0.00 0.00 0.00 3.51
286 287 1.067295 TCCTCTCAACCCATGTGCTT 58.933 50.000 0.00 0.00 0.00 3.91
287 288 0.326264 GTCCTCTCAACCCATGTGCT 59.674 55.000 0.00 0.00 0.00 4.40
288 289 0.036732 TGTCCTCTCAACCCATGTGC 59.963 55.000 0.00 0.00 0.00 4.57
289 290 2.290514 ACATGTCCTCTCAACCCATGTG 60.291 50.000 0.00 0.00 43.16 3.21
290 291 1.988107 ACATGTCCTCTCAACCCATGT 59.012 47.619 0.00 0.00 40.80 3.21
291 292 2.362736 CACATGTCCTCTCAACCCATG 58.637 52.381 0.00 0.00 39.00 3.66
292 293 1.283029 CCACATGTCCTCTCAACCCAT 59.717 52.381 0.00 0.00 0.00 4.00
293 294 0.692476 CCACATGTCCTCTCAACCCA 59.308 55.000 0.00 0.00 0.00 4.51
294 295 0.693049 ACCACATGTCCTCTCAACCC 59.307 55.000 0.00 0.00 0.00 4.11
295 296 2.100605 GACCACATGTCCTCTCAACC 57.899 55.000 0.00 0.00 38.09 3.77
304 305 3.003689 CACTTTCAGTTGGACCACATGTC 59.996 47.826 0.00 0.00 43.67 3.06
305 306 2.951642 CACTTTCAGTTGGACCACATGT 59.048 45.455 0.00 0.00 0.00 3.21
306 307 2.294233 CCACTTTCAGTTGGACCACATG 59.706 50.000 0.00 0.00 0.00 3.21
307 308 2.586425 CCACTTTCAGTTGGACCACAT 58.414 47.619 0.00 0.00 0.00 3.21
308 309 1.409521 CCCACTTTCAGTTGGACCACA 60.410 52.381 0.00 0.00 33.09 4.17
309 310 1.318576 CCCACTTTCAGTTGGACCAC 58.681 55.000 0.00 0.00 33.09 4.16
310 311 0.467290 GCCCACTTTCAGTTGGACCA 60.467 55.000 0.00 0.00 33.09 4.02
311 312 0.467290 TGCCCACTTTCAGTTGGACC 60.467 55.000 0.00 0.00 33.09 4.46
312 313 1.398692 TTGCCCACTTTCAGTTGGAC 58.601 50.000 0.00 0.00 33.09 4.02
313 314 2.031120 CTTTGCCCACTTTCAGTTGGA 58.969 47.619 0.00 0.00 33.09 3.53
314 315 1.538849 GCTTTGCCCACTTTCAGTTGG 60.539 52.381 0.00 0.00 34.36 3.77
315 316 1.136695 TGCTTTGCCCACTTTCAGTTG 59.863 47.619 0.00 0.00 0.00 3.16
316 317 1.410153 CTGCTTTGCCCACTTTCAGTT 59.590 47.619 0.00 0.00 0.00 3.16
317 318 1.035139 CTGCTTTGCCCACTTTCAGT 58.965 50.000 0.00 0.00 0.00 3.41
318 319 1.000938 GTCTGCTTTGCCCACTTTCAG 60.001 52.381 0.00 0.00 0.00 3.02
319 320 1.032014 GTCTGCTTTGCCCACTTTCA 58.968 50.000 0.00 0.00 0.00 2.69
320 321 0.315251 GGTCTGCTTTGCCCACTTTC 59.685 55.000 0.00 0.00 0.00 2.62
321 322 0.396974 TGGTCTGCTTTGCCCACTTT 60.397 50.000 0.00 0.00 0.00 2.66
322 323 1.109323 GTGGTCTGCTTTGCCCACTT 61.109 55.000 8.49 0.00 43.21 3.16
323 324 1.529244 GTGGTCTGCTTTGCCCACT 60.529 57.895 8.49 0.00 43.21 4.00
324 325 1.529244 AGTGGTCTGCTTTGCCCAC 60.529 57.895 7.91 7.91 46.17 4.61
325 326 1.529010 CAGTGGTCTGCTTTGCCCA 60.529 57.895 0.00 0.00 34.79 5.36
326 327 3.359002 CAGTGGTCTGCTTTGCCC 58.641 61.111 0.00 0.00 34.79 5.36
334 335 1.338973 ACTTTTGCATGCAGTGGTCTG 59.661 47.619 21.50 10.29 43.87 3.51
335 336 1.610522 GACTTTTGCATGCAGTGGTCT 59.389 47.619 26.70 11.20 0.00 3.85
336 337 1.337703 TGACTTTTGCATGCAGTGGTC 59.662 47.619 26.99 26.99 0.00 4.02
337 338 1.401761 TGACTTTTGCATGCAGTGGT 58.598 45.000 21.50 18.91 0.00 4.16
338 339 2.512485 TTGACTTTTGCATGCAGTGG 57.488 45.000 21.50 15.95 0.00 4.00
339 340 5.006844 TGAATTTTGACTTTTGCATGCAGTG 59.993 36.000 21.50 16.37 0.00 3.66
340 341 5.117584 TGAATTTTGACTTTTGCATGCAGT 58.882 33.333 21.50 15.68 0.00 4.40
341 342 5.660629 TGAATTTTGACTTTTGCATGCAG 57.339 34.783 21.50 12.23 0.00 4.41
342 343 6.432607 TTTGAATTTTGACTTTTGCATGCA 57.567 29.167 18.46 18.46 0.00 3.96
343 344 7.917720 ATTTTGAATTTTGACTTTTGCATGC 57.082 28.000 11.82 11.82 0.00 4.06
354 355 9.202273 CGGACAGGATAAAATTTTGAATTTTGA 57.798 29.630 13.76 6.25 33.73 2.69
355 356 8.442384 CCGGACAGGATAAAATTTTGAATTTTG 58.558 33.333 13.76 6.97 45.00 2.44
356 357 7.119116 GCCGGACAGGATAAAATTTTGAATTTT 59.881 33.333 13.76 13.82 45.00 1.82
357 358 6.593770 GCCGGACAGGATAAAATTTTGAATTT 59.406 34.615 13.76 0.00 45.00 1.82
358 359 6.106003 GCCGGACAGGATAAAATTTTGAATT 58.894 36.000 13.76 0.00 45.00 2.17
359 360 5.186797 TGCCGGACAGGATAAAATTTTGAAT 59.813 36.000 13.76 0.00 45.00 2.57
360 361 4.524714 TGCCGGACAGGATAAAATTTTGAA 59.475 37.500 13.76 0.00 45.00 2.69
361 362 4.082845 TGCCGGACAGGATAAAATTTTGA 58.917 39.130 13.76 0.00 45.00 2.69
362 363 4.448537 TGCCGGACAGGATAAAATTTTG 57.551 40.909 13.76 0.00 45.00 2.44
363 364 5.476091 TTTGCCGGACAGGATAAAATTTT 57.524 34.783 5.05 8.75 45.00 1.82
364 365 5.011635 ACTTTTGCCGGACAGGATAAAATTT 59.988 36.000 5.05 0.00 45.00 1.82
365 366 4.526650 ACTTTTGCCGGACAGGATAAAATT 59.473 37.500 5.05 0.00 45.00 1.82
366 367 4.086457 ACTTTTGCCGGACAGGATAAAAT 58.914 39.130 5.05 0.00 45.00 1.82
367 368 3.492337 ACTTTTGCCGGACAGGATAAAA 58.508 40.909 5.05 1.94 45.00 1.52
368 369 3.078837 GACTTTTGCCGGACAGGATAAA 58.921 45.455 5.05 0.00 45.00 1.40
470 471 3.259374 CCTGAGAGCAAGTAGGACAAAGA 59.741 47.826 0.00 0.00 31.91 2.52
526 527 7.175990 CCAAACCTCCTTTGCTTTAGTACATAA 59.824 37.037 0.00 0.00 38.40 1.90
656 657 7.747690 TCGTACATTTTGGTACCCCATAATAT 58.252 34.615 10.07 0.00 39.50 1.28
825 826 2.190538 CAAGCCCCCTTTTTCATGGAT 58.809 47.619 0.00 0.00 0.00 3.41
842 843 0.106519 CCTAGGGGGACAATGCCAAG 60.107 60.000 0.00 0.00 37.23 3.61
867 868 2.290641 GGCGTCAACATTGAGTTTCACT 59.709 45.455 0.00 0.00 38.74 3.41
918 919 1.532794 TCGCAAAACTGCCCCCATT 60.533 52.632 0.00 0.00 0.00 3.16
927 928 1.597663 CCTTTGTCGTCTCGCAAAACT 59.402 47.619 10.67 0.00 34.60 2.66
1004 1005 5.418840 CCAAATTTGAGGGCTAAAGCTTCTA 59.581 40.000 19.86 0.00 41.70 2.10
1147 1148 1.001974 TGCGTAGTGGAAGCAGTCATT 59.998 47.619 0.00 0.00 37.65 2.57
1381 1383 2.063979 TCCTCACGGCCCATGTAGG 61.064 63.158 0.00 5.59 37.03 3.18
1382 1384 1.144057 GTCCTCACGGCCCATGTAG 59.856 63.158 0.00 0.00 0.00 2.74
1383 1385 0.980754 ATGTCCTCACGGCCCATGTA 60.981 55.000 0.00 0.00 0.00 2.29
1384 1386 0.980754 TATGTCCTCACGGCCCATGT 60.981 55.000 0.00 0.00 0.00 3.21
1385 1387 0.397941 ATATGTCCTCACGGCCCATG 59.602 55.000 0.00 0.00 0.00 3.66
1386 1388 0.397941 CATATGTCCTCACGGCCCAT 59.602 55.000 0.00 0.00 0.00 4.00
1387 1389 1.695114 CCATATGTCCTCACGGCCCA 61.695 60.000 0.00 0.00 0.00 5.36
1388 1390 1.071471 CCATATGTCCTCACGGCCC 59.929 63.158 0.00 0.00 0.00 5.80
1389 1391 0.249911 GACCATATGTCCTCACGGCC 60.250 60.000 1.24 0.00 38.09 6.13
1390 1392 3.290776 GACCATATGTCCTCACGGC 57.709 57.895 1.24 0.00 38.09 5.68
1398 1400 2.093658 ACCGTCAGTTGGACCATATGTC 60.094 50.000 0.00 0.00 43.95 3.06
1399 1401 1.906574 ACCGTCAGTTGGACCATATGT 59.093 47.619 0.00 0.00 43.95 2.29
1400 1402 2.279741 CACCGTCAGTTGGACCATATG 58.720 52.381 0.00 0.00 43.95 1.78
1401 1403 1.209504 CCACCGTCAGTTGGACCATAT 59.790 52.381 0.00 0.00 43.95 1.78
1402 1404 0.611200 CCACCGTCAGTTGGACCATA 59.389 55.000 0.00 0.00 43.95 2.74
1403 1405 1.374947 CCACCGTCAGTTGGACCAT 59.625 57.895 0.00 0.00 43.95 3.55
1404 1406 2.813726 CCCACCGTCAGTTGGACCA 61.814 63.158 0.00 0.00 43.95 4.02
1405 1407 2.032071 CCCACCGTCAGTTGGACC 59.968 66.667 0.00 0.00 43.95 4.46
1406 1408 2.668550 GCCCACCGTCAGTTGGAC 60.669 66.667 0.00 0.00 43.36 4.02
1407 1409 3.948719 GGCCCACCGTCAGTTGGA 61.949 66.667 0.00 0.00 32.81 3.53
1408 1410 3.783362 TTGGCCCACCGTCAGTTGG 62.783 63.158 0.00 0.00 39.70 3.77
1409 1411 2.203280 TTGGCCCACCGTCAGTTG 60.203 61.111 0.00 0.00 39.70 3.16
1410 1412 2.113139 CTTGGCCCACCGTCAGTT 59.887 61.111 0.00 0.00 39.70 3.16
1411 1413 4.643387 GCTTGGCCCACCGTCAGT 62.643 66.667 0.00 0.00 39.70 3.41
1412 1414 4.641645 TGCTTGGCCCACCGTCAG 62.642 66.667 0.00 0.00 39.70 3.51
1413 1415 4.641645 CTGCTTGGCCCACCGTCA 62.642 66.667 0.00 0.00 39.70 4.35
1414 1416 4.329545 TCTGCTTGGCCCACCGTC 62.330 66.667 0.00 0.00 39.70 4.79
1415 1417 4.643387 GTCTGCTTGGCCCACCGT 62.643 66.667 0.00 0.00 39.70 4.83
1417 1419 4.284550 TGGTCTGCTTGGCCCACC 62.285 66.667 0.00 0.00 40.46 4.61
1418 1420 2.985847 GTGGTCTGCTTGGCCCAC 60.986 66.667 0.00 0.00 40.46 4.61
1419 1421 3.177884 AGTGGTCTGCTTGGCCCA 61.178 61.111 0.00 0.00 40.46 5.36
1420 1422 2.674380 CAGTGGTCTGCTTGGCCC 60.674 66.667 0.00 0.00 40.46 5.80
1447 1449 3.886550 GAAGCAACCTGGGGGTGGG 62.887 68.421 3.69 0.00 46.67 4.61
1448 1450 2.283173 GAAGCAACCTGGGGGTGG 60.283 66.667 3.69 0.00 46.67 4.61
1449 1451 2.283173 GGAAGCAACCTGGGGGTG 60.283 66.667 0.00 0.00 46.67 4.61
1451 1453 2.499303 AATCGGAAGCAACCTGGGGG 62.499 60.000 0.00 0.00 38.88 5.40
1452 1454 0.611896 AAATCGGAAGCAACCTGGGG 60.612 55.000 0.00 0.00 0.00 4.96
1453 1455 0.527565 CAAATCGGAAGCAACCTGGG 59.472 55.000 0.00 0.00 0.00 4.45
1454 1456 1.470098 CTCAAATCGGAAGCAACCTGG 59.530 52.381 0.00 0.00 0.00 4.45
1455 1457 2.417933 CTCTCAAATCGGAAGCAACCTG 59.582 50.000 0.00 0.00 0.00 4.00
1456 1458 2.303022 TCTCTCAAATCGGAAGCAACCT 59.697 45.455 0.00 0.00 0.00 3.50
1457 1459 2.699954 TCTCTCAAATCGGAAGCAACC 58.300 47.619 0.00 0.00 0.00 3.77
1458 1460 4.954092 ATTCTCTCAAATCGGAAGCAAC 57.046 40.909 0.00 0.00 0.00 4.17
1459 1461 5.812642 GTCTATTCTCTCAAATCGGAAGCAA 59.187 40.000 0.00 0.00 0.00 3.91
1460 1462 5.105351 TGTCTATTCTCTCAAATCGGAAGCA 60.105 40.000 0.00 0.00 0.00 3.91
1461 1463 5.352284 TGTCTATTCTCTCAAATCGGAAGC 58.648 41.667 0.00 0.00 0.00 3.86
1462 1464 6.073873 GCATGTCTATTCTCTCAAATCGGAAG 60.074 42.308 0.00 0.00 0.00 3.46
1463 1465 5.755375 GCATGTCTATTCTCTCAAATCGGAA 59.245 40.000 0.00 0.00 0.00 4.30
1464 1466 5.292765 GCATGTCTATTCTCTCAAATCGGA 58.707 41.667 0.00 0.00 0.00 4.55
1465 1467 4.149571 CGCATGTCTATTCTCTCAAATCGG 59.850 45.833 0.00 0.00 0.00 4.18
1466 1468 4.149571 CCGCATGTCTATTCTCTCAAATCG 59.850 45.833 0.00 0.00 0.00 3.34
1467 1469 5.292765 TCCGCATGTCTATTCTCTCAAATC 58.707 41.667 0.00 0.00 0.00 2.17
1468 1470 5.282055 TCCGCATGTCTATTCTCTCAAAT 57.718 39.130 0.00 0.00 0.00 2.32
1469 1471 4.736126 TCCGCATGTCTATTCTCTCAAA 57.264 40.909 0.00 0.00 0.00 2.69
1470 1472 4.944619 ATCCGCATGTCTATTCTCTCAA 57.055 40.909 0.00 0.00 0.00 3.02
1471 1473 4.502087 CCAATCCGCATGTCTATTCTCTCA 60.502 45.833 0.00 0.00 0.00 3.27
1472 1474 3.993081 CCAATCCGCATGTCTATTCTCTC 59.007 47.826 0.00 0.00 0.00 3.20
1473 1475 3.389329 ACCAATCCGCATGTCTATTCTCT 59.611 43.478 0.00 0.00 0.00 3.10
1474 1476 3.733337 ACCAATCCGCATGTCTATTCTC 58.267 45.455 0.00 0.00 0.00 2.87
1475 1477 3.495100 GGACCAATCCGCATGTCTATTCT 60.495 47.826 0.00 0.00 34.48 2.40
1476 1478 2.808543 GGACCAATCCGCATGTCTATTC 59.191 50.000 0.00 0.00 34.48 1.75
1477 1479 2.851195 GGACCAATCCGCATGTCTATT 58.149 47.619 0.00 0.00 34.48 1.73
1478 1480 2.550830 GGACCAATCCGCATGTCTAT 57.449 50.000 0.00 0.00 34.48 1.98
1480 1482 4.963878 GGACCAATCCGCATGTCT 57.036 55.556 0.00 0.00 34.48 3.41
1488 1490 1.405661 GGAACGTCTGAGGACCAATCC 60.406 57.143 4.12 0.92 46.69 3.01
1489 1491 2.011540 GGAACGTCTGAGGACCAATC 57.988 55.000 4.12 0.00 39.15 2.67
1519 1521 1.269448 CACTTTTGTCATCCAACGGGG 59.731 52.381 0.00 0.00 38.37 5.73
1520 1522 1.269448 CCACTTTTGTCATCCAACGGG 59.731 52.381 0.00 0.00 31.20 5.28
1521 1523 1.953686 ACCACTTTTGTCATCCAACGG 59.046 47.619 0.00 0.00 31.20 4.44
1522 1524 2.031157 GGACCACTTTTGTCATCCAACG 60.031 50.000 0.00 0.00 34.92 4.10
1523 1525 2.031157 CGGACCACTTTTGTCATCCAAC 60.031 50.000 0.00 0.00 34.63 3.77
1524 1526 2.226330 CGGACCACTTTTGTCATCCAA 58.774 47.619 0.00 0.00 34.63 3.53
1525 1527 1.544537 CCGGACCACTTTTGTCATCCA 60.545 52.381 0.00 0.00 34.63 3.41
1526 1528 1.165270 CCGGACCACTTTTGTCATCC 58.835 55.000 0.00 0.00 34.36 3.51
1527 1529 1.804748 GTCCGGACCACTTTTGTCATC 59.195 52.381 24.75 0.00 34.36 2.92
1528 1530 1.142060 TGTCCGGACCACTTTTGTCAT 59.858 47.619 31.19 0.00 34.36 3.06
1529 1531 0.542333 TGTCCGGACCACTTTTGTCA 59.458 50.000 31.19 6.03 34.36 3.58
1530 1532 0.942252 GTGTCCGGACCACTTTTGTC 59.058 55.000 31.19 3.08 0.00 3.18
1531 1533 0.464916 GGTGTCCGGACCACTTTTGT 60.465 55.000 31.19 0.00 35.88 2.83
1532 1534 0.464735 TGGTGTCCGGACCACTTTTG 60.465 55.000 31.19 0.00 41.30 2.44
1533 1535 1.916738 TGGTGTCCGGACCACTTTT 59.083 52.632 31.19 0.00 41.30 2.27
1534 1536 3.650023 TGGTGTCCGGACCACTTT 58.350 55.556 31.19 0.00 41.30 2.66
1539 1541 0.828022 TGTATCATGGTGTCCGGACC 59.172 55.000 31.19 21.32 36.43 4.46
1540 1542 1.754803 TCTGTATCATGGTGTCCGGAC 59.245 52.381 28.17 28.17 0.00 4.79
1541 1543 2.031870 CTCTGTATCATGGTGTCCGGA 58.968 52.381 0.00 0.00 0.00 5.14
1542 1544 2.031870 TCTCTGTATCATGGTGTCCGG 58.968 52.381 0.00 0.00 0.00 5.14
1543 1545 2.690497 ACTCTCTGTATCATGGTGTCCG 59.310 50.000 0.00 0.00 0.00 4.79
1544 1546 3.957497 AGACTCTCTGTATCATGGTGTCC 59.043 47.826 0.00 0.00 0.00 4.02
1545 1547 4.202101 CCAGACTCTCTGTATCATGGTGTC 60.202 50.000 0.00 0.00 42.80 3.67
1546 1548 3.703556 CCAGACTCTCTGTATCATGGTGT 59.296 47.826 0.00 0.00 42.80 4.16
1547 1549 3.703556 ACCAGACTCTCTGTATCATGGTG 59.296 47.826 0.00 0.00 42.80 4.17
1548 1550 3.987745 ACCAGACTCTCTGTATCATGGT 58.012 45.455 0.00 0.00 42.80 3.55
1549 1551 5.350504 AAACCAGACTCTCTGTATCATGG 57.649 43.478 0.00 0.00 42.80 3.66
1550 1552 8.253810 TCTTTAAACCAGACTCTCTGTATCATG 58.746 37.037 0.00 0.00 42.80 3.07
1551 1553 8.367660 TCTTTAAACCAGACTCTCTGTATCAT 57.632 34.615 0.00 0.00 42.80 2.45
1552 1554 7.776618 TCTTTAAACCAGACTCTCTGTATCA 57.223 36.000 0.00 0.00 42.80 2.15
1553 1555 7.223777 GCATCTTTAAACCAGACTCTCTGTATC 59.776 40.741 0.00 0.00 42.80 2.24
1554 1556 7.044798 GCATCTTTAAACCAGACTCTCTGTAT 58.955 38.462 0.00 0.00 42.80 2.29
1555 1557 6.398918 GCATCTTTAAACCAGACTCTCTGTA 58.601 40.000 0.00 0.00 42.80 2.74
1556 1558 5.241662 GCATCTTTAAACCAGACTCTCTGT 58.758 41.667 0.00 0.00 42.80 3.41
1557 1559 4.633565 GGCATCTTTAAACCAGACTCTCTG 59.366 45.833 0.00 0.00 43.91 3.35
1558 1560 4.287067 TGGCATCTTTAAACCAGACTCTCT 59.713 41.667 0.00 0.00 0.00 3.10
1559 1561 4.579869 TGGCATCTTTAAACCAGACTCTC 58.420 43.478 0.00 0.00 0.00 3.20
1560 1562 4.640771 TGGCATCTTTAAACCAGACTCT 57.359 40.909 0.00 0.00 0.00 3.24
1561 1563 5.904362 AATGGCATCTTTAAACCAGACTC 57.096 39.130 0.00 0.00 35.20 3.36
1562 1564 6.948309 AGTTAATGGCATCTTTAAACCAGACT 59.052 34.615 0.00 3.56 35.20 3.24
1563 1565 7.029563 CAGTTAATGGCATCTTTAAACCAGAC 58.970 38.462 0.00 1.79 35.20 3.51
1564 1566 6.945435 TCAGTTAATGGCATCTTTAAACCAGA 59.055 34.615 0.00 0.62 35.20 3.86
1565 1567 7.156876 TCAGTTAATGGCATCTTTAAACCAG 57.843 36.000 0.00 0.00 35.20 4.00
1566 1568 7.232534 AGTTCAGTTAATGGCATCTTTAAACCA 59.767 33.333 0.00 0.00 36.43 3.67
1567 1569 7.602753 AGTTCAGTTAATGGCATCTTTAAACC 58.397 34.615 0.00 0.00 0.00 3.27
1568 1570 8.915654 CAAGTTCAGTTAATGGCATCTTTAAAC 58.084 33.333 0.00 2.24 0.00 2.01
1569 1571 8.637986 ACAAGTTCAGTTAATGGCATCTTTAAA 58.362 29.630 0.00 0.00 0.00 1.52
1570 1572 8.177119 ACAAGTTCAGTTAATGGCATCTTTAA 57.823 30.769 0.00 0.00 0.00 1.52
1571 1573 7.360861 CGACAAGTTCAGTTAATGGCATCTTTA 60.361 37.037 0.00 0.00 0.00 1.85
1572 1574 6.568462 CGACAAGTTCAGTTAATGGCATCTTT 60.568 38.462 0.00 0.00 0.00 2.52
1573 1575 5.106555 CGACAAGTTCAGTTAATGGCATCTT 60.107 40.000 0.00 0.00 0.00 2.40
1574 1576 4.393062 CGACAAGTTCAGTTAATGGCATCT 59.607 41.667 0.00 0.00 0.00 2.90
1575 1577 4.437390 CCGACAAGTTCAGTTAATGGCATC 60.437 45.833 0.00 0.00 0.00 3.91
1576 1578 3.440173 CCGACAAGTTCAGTTAATGGCAT 59.560 43.478 0.00 0.00 0.00 4.40
1577 1579 2.811431 CCGACAAGTTCAGTTAATGGCA 59.189 45.455 0.00 0.00 0.00 4.92
1578 1580 2.161609 CCCGACAAGTTCAGTTAATGGC 59.838 50.000 0.00 0.00 0.00 4.40
1579 1581 2.747446 CCCCGACAAGTTCAGTTAATGG 59.253 50.000 0.00 0.00 0.00 3.16
1580 1582 2.747446 CCCCCGACAAGTTCAGTTAATG 59.253 50.000 0.00 0.00 0.00 1.90
1581 1583 3.067684 CCCCCGACAAGTTCAGTTAAT 57.932 47.619 0.00 0.00 0.00 1.40
1582 1584 2.554370 CCCCCGACAAGTTCAGTTAA 57.446 50.000 0.00 0.00 0.00 2.01
1722 1742 3.068691 CGAGTCGAGGGGCTTGGA 61.069 66.667 6.73 0.00 0.00 3.53
1774 1794 0.971386 GTCGGGGAAGTCTTGGTGTA 59.029 55.000 0.00 0.00 0.00 2.90
1777 1797 0.396811 CTTGTCGGGGAAGTCTTGGT 59.603 55.000 0.00 0.00 0.00 3.67
1818 1839 1.152610 CCCATGGCTGGATTGAGGG 60.153 63.158 6.09 0.00 46.37 4.30
1856 1877 2.363276 TCATCCCACCGTACGGCT 60.363 61.111 33.62 18.07 39.32 5.52
1883 1904 2.799126 ATTGCCTCGGTCATTTGGTA 57.201 45.000 0.00 0.00 0.00 3.25
1983 2004 1.003839 TGACGGTGGGAGCAATGTC 60.004 57.895 0.00 0.00 0.00 3.06
1987 2008 3.164977 TGGTGACGGTGGGAGCAA 61.165 61.111 0.00 0.00 0.00 3.91
1991 2012 1.808531 CGTTAGTGGTGACGGTGGGA 61.809 60.000 0.00 0.00 35.74 4.37
2066 2089 1.792367 CGCTGTCTTGTCAATCGTCAA 59.208 47.619 0.00 0.00 0.00 3.18
2174 2198 4.840005 GGGCCAGGTAGTCAGCGC 62.840 72.222 4.39 0.00 0.00 5.92
2182 2206 1.273609 ACATGACTGTAGGGCCAGGTA 60.274 52.381 6.18 0.00 36.75 3.08
2207 2231 2.083628 CCCTAGGGGTACAGTGGTAG 57.916 60.000 21.44 0.00 38.25 3.18
2232 2256 1.850998 GCTCCTGGGGGTTTTATAGGT 59.149 52.381 0.00 0.00 0.00 3.08
2320 2362 2.377136 GCTCCTTCTTCCAGGGTGA 58.623 57.895 0.00 0.00 34.24 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.