Multiple sequence alignment - TraesCS6B01G047800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G047800 chr6B 100.000 2919 0 0 1 2919 28000949 27998031 0.000000e+00 5391.0
1 TraesCS6B01G047800 chr6B 89.965 1156 66 15 959 2080 27946185 27947324 0.000000e+00 1447.0
2 TraesCS6B01G047800 chr6B 83.401 735 89 20 2112 2818 59301000 59301729 0.000000e+00 651.0
3 TraesCS6B01G047800 chr6B 85.122 531 50 12 2116 2633 27941586 27942100 1.550000e-142 516.0
4 TraesCS6B01G047800 chr6B 84.586 532 52 13 2116 2633 28006157 28005642 4.340000e-138 501.0
5 TraesCS6B01G047800 chr6B 84.777 381 46 5 2112 2481 29047659 29048038 3.550000e-99 372.0
6 TraesCS6B01G047800 chr6B 80.781 333 50 13 2494 2818 29053236 29053562 6.250000e-62 248.0
7 TraesCS6B01G047800 chr6B 82.993 294 25 16 530 803 27945804 27946092 2.910000e-60 243.0
8 TraesCS6B01G047800 chr6B 95.122 41 2 0 916 956 27946121 27946161 6.750000e-07 65.8
9 TraesCS6B01G047800 chr6B 100.000 32 0 0 486 517 28000316 28000347 3.140000e-05 60.2
10 TraesCS6B01G047800 chr6B 97.143 35 1 0 600 634 28000430 28000464 3.140000e-05 60.2
11 TraesCS6B01G047800 chr6A 88.756 1005 77 23 1082 2081 16462131 16463104 0.000000e+00 1197.0
12 TraesCS6B01G047800 chr6A 82.275 756 104 20 2112 2850 16712427 16713169 6.870000e-176 627.0
13 TraesCS6B01G047800 chr6A 83.647 532 52 12 2112 2624 16457179 16457694 4.400000e-128 468.0
14 TraesCS6B01G047800 chr6A 88.158 228 18 5 2112 2330 16466896 16467123 2.230000e-66 263.0
15 TraesCS6B01G047800 chr6A 79.924 264 35 14 664 917 16461533 16461788 8.310000e-41 178.0
16 TraesCS6B01G047800 chr6A 88.172 93 11 0 2084 2176 16463923 16464015 8.550000e-21 111.0
17 TraesCS6B01G047800 chr2B 82.348 1320 70 56 825 2080 46603316 46604536 0.000000e+00 996.0
18 TraesCS6B01G047800 chr2B 85.983 478 33 4 1 477 46602630 46603074 5.660000e-132 481.0
19 TraesCS6B01G047800 chr2B 83.396 536 57 15 2112 2633 46595518 46596035 4.400000e-128 468.0
20 TraesCS6B01G047800 chr6D 91.408 547 29 3 1552 2081 16198921 16199466 0.000000e+00 734.0
21 TraesCS6B01G047800 chr6D 89.871 543 40 7 954 1489 16198370 16198904 0.000000e+00 684.0
22 TraesCS6B01G047800 chr6D 85.234 535 50 12 2112 2633 16190791 16191309 9.270000e-145 523.0
23 TraesCS6B01G047800 chr6D 87.037 432 46 5 46 477 16197309 16197730 2.030000e-131 479.0
24 TraesCS6B01G047800 chr6D 90.789 228 12 5 2112 2330 16232385 16232612 2.200000e-76 296.0
25 TraesCS6B01G047800 chr6D 80.723 249 40 8 2608 2850 16516422 16516668 1.380000e-43 187.0
26 TraesCS6B01G047800 chr6D 81.739 230 23 11 530 745 16197850 16198074 1.080000e-39 174.0
27 TraesCS6B01G047800 chr1B 80.952 756 116 19 2115 2853 587496221 587495477 9.070000e-160 573.0
28 TraesCS6B01G047800 chr3B 80.612 294 55 2 1557 1849 786720611 786720903 2.930000e-55 226.0
29 TraesCS6B01G047800 chr3B 78.007 291 59 5 1565 1851 786279644 786279933 8.310000e-41 178.0
30 TraesCS6B01G047800 chr3B 81.915 188 26 6 1254 1434 786279445 786279631 5.040000e-33 152.0
31 TraesCS6B01G047800 chr3D 79.661 295 56 4 1557 1849 588315063 588315355 2.950000e-50 209.0
32 TraesCS6B01G047800 chr3D 81.915 188 26 6 1254 1434 588078511 588078697 5.040000e-33 152.0
33 TraesCS6B01G047800 chr3D 82.286 175 25 3 1266 1434 588155973 588155799 2.340000e-31 147.0
34 TraesCS6B01G047800 chr3A 80.928 194 31 3 1247 1434 718063764 718063571 6.520000e-32 148.0
35 TraesCS6B01G047800 chr3A 81.977 172 25 4 1269 1434 717946475 717946646 1.090000e-29 141.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G047800 chr6B 27998031 28000949 2918 True 5391.00 5391 100.00000 1 2919 1 chr6B.!!$R1 2918
1 TraesCS6B01G047800 chr6B 59301000 59301729 729 False 651.00 651 83.40100 2112 2818 1 chr6B.!!$F3 706
2 TraesCS6B01G047800 chr6B 27941586 27947324 5738 False 567.95 1447 88.30050 530 2633 4 chr6B.!!$F4 2103
3 TraesCS6B01G047800 chr6B 28005642 28006157 515 True 501.00 501 84.58600 2116 2633 1 chr6B.!!$R2 517
4 TraesCS6B01G047800 chr6A 16712427 16713169 742 False 627.00 627 82.27500 2112 2850 1 chr6A.!!$F1 738
5 TraesCS6B01G047800 chr6A 16457179 16467123 9944 False 443.40 1197 85.73140 664 2624 5 chr6A.!!$F2 1960
6 TraesCS6B01G047800 chr2B 46602630 46604536 1906 False 738.50 996 84.16550 1 2080 2 chr2B.!!$F2 2079
7 TraesCS6B01G047800 chr2B 46595518 46596035 517 False 468.00 468 83.39600 2112 2633 1 chr2B.!!$F1 521
8 TraesCS6B01G047800 chr6D 16190791 16191309 518 False 523.00 523 85.23400 2112 2633 1 chr6D.!!$F1 521
9 TraesCS6B01G047800 chr6D 16197309 16199466 2157 False 517.75 734 87.51375 46 2081 4 chr6D.!!$F4 2035
10 TraesCS6B01G047800 chr1B 587495477 587496221 744 True 573.00 573 80.95200 2115 2853 1 chr1B.!!$R1 738

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
825 922 0.031178 GTGGCCACTTTGTCTGCAAG 59.969 55.0 29.12 0.0 35.82 4.01 F
976 1151 0.108615 CAGATGGGTGGTGAGTCGTC 60.109 60.0 0.00 0.0 0.00 4.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1860 2087 0.038166 GGCATCAGTTCCCCTGTTCA 59.962 55.0 0.0 0.0 42.19 3.18 R
2110 2348 0.099436 CTGGCTAAGCAAATGACGCC 59.901 55.0 0.0 0.0 38.01 5.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 0.914417 ACATGGGGTAGTGTGGGAGG 60.914 60.000 0.00 0.00 0.00 4.30
47 48 2.669240 GTAGTGTGGGAGGTGGCC 59.331 66.667 0.00 0.00 0.00 5.36
159 160 7.307455 GCTCATAACTCCAAATTAGTTCCGATC 60.307 40.741 0.00 0.00 38.18 3.69
160 161 6.700081 TCATAACTCCAAATTAGTTCCGATCG 59.300 38.462 8.51 8.51 38.18 3.69
170 171 3.662247 AGTTCCGATCGACTTCTTTGT 57.338 42.857 18.66 0.00 0.00 2.83
180 181 8.388103 CCGATCGACTTCTTTGTAATAAACATT 58.612 33.333 18.66 0.00 38.10 2.71
273 274 5.049749 GCGTTGATTTAATGTTTTTGCCCTT 60.050 36.000 0.00 0.00 0.00 3.95
308 309 4.039245 TGAAAGTTCACAAAACCACCAACA 59.961 37.500 0.00 0.00 31.01 3.33
309 310 3.586100 AGTTCACAAAACCACCAACAC 57.414 42.857 0.00 0.00 0.00 3.32
314 315 4.590918 TCACAAAACCACCAACACTTAGA 58.409 39.130 0.00 0.00 0.00 2.10
317 318 5.299279 CACAAAACCACCAACACTTAGATCT 59.701 40.000 0.00 0.00 0.00 2.75
318 319 5.299279 ACAAAACCACCAACACTTAGATCTG 59.701 40.000 5.18 0.00 0.00 2.90
320 321 5.818678 AACCACCAACACTTAGATCTGTA 57.181 39.130 5.18 0.00 0.00 2.74
321 322 5.818678 ACCACCAACACTTAGATCTGTAA 57.181 39.130 5.18 0.00 0.00 2.41
408 409 6.465948 TGGATTTCAAATTCCAATGGTTCTG 58.534 36.000 0.00 0.00 39.05 3.02
410 411 6.936335 GGATTTCAAATTCCAATGGTTCTGTT 59.064 34.615 0.00 0.00 31.99 3.16
422 426 6.823182 CCAATGGTTCTGTTATGACTCATACA 59.177 38.462 0.00 0.99 0.00 2.29
423 427 7.201644 CCAATGGTTCTGTTATGACTCATACAC 60.202 40.741 0.00 2.42 0.00 2.90
424 428 6.353404 TGGTTCTGTTATGACTCATACACA 57.647 37.500 0.00 6.20 0.00 3.72
431 435 6.033966 TGTTATGACTCATACACATCGTGAC 58.966 40.000 0.24 0.00 36.96 3.67
477 481 5.544650 CATTCATGCTTCCTTGGTTTCTTT 58.455 37.500 0.00 0.00 0.00 2.52
478 482 6.690530 CATTCATGCTTCCTTGGTTTCTTTA 58.309 36.000 0.00 0.00 0.00 1.85
479 483 5.705609 TCATGCTTCCTTGGTTTCTTTAC 57.294 39.130 0.00 0.00 0.00 2.01
480 484 5.136828 TCATGCTTCCTTGGTTTCTTTACA 58.863 37.500 0.00 0.00 0.00 2.41
481 485 4.911514 TGCTTCCTTGGTTTCTTTACAC 57.088 40.909 0.00 0.00 0.00 2.90
482 486 4.274147 TGCTTCCTTGGTTTCTTTACACA 58.726 39.130 0.00 0.00 0.00 3.72
483 487 4.892934 TGCTTCCTTGGTTTCTTTACACAT 59.107 37.500 0.00 0.00 0.00 3.21
485 489 5.682943 TTCCTTGGTTTCTTTACACATCG 57.317 39.130 0.00 0.00 0.00 3.84
486 490 4.963373 TCCTTGGTTTCTTTACACATCGA 58.037 39.130 0.00 0.00 0.00 3.59
489 493 5.391950 CCTTGGTTTCTTTACACATCGATGG 60.392 44.000 28.09 18.89 0.00 3.51
490 494 4.647611 TGGTTTCTTTACACATCGATGGT 58.352 39.130 28.09 22.97 0.00 3.55
491 495 5.067273 TGGTTTCTTTACACATCGATGGTT 58.933 37.500 28.09 16.79 0.00 3.67
492 496 5.533154 TGGTTTCTTTACACATCGATGGTTT 59.467 36.000 28.09 14.40 0.00 3.27
493 497 6.711194 TGGTTTCTTTACACATCGATGGTTTA 59.289 34.615 28.09 13.44 0.00 2.01
494 498 7.392113 TGGTTTCTTTACACATCGATGGTTTAT 59.608 33.333 28.09 11.47 0.00 1.40
495 499 7.696453 GGTTTCTTTACACATCGATGGTTTATG 59.304 37.037 28.09 18.75 0.00 1.90
496 500 7.915293 TTCTTTACACATCGATGGTTTATGT 57.085 32.000 28.09 22.91 34.22 2.29
500 504 2.945008 CACATCGATGGTTTATGTGGCT 59.055 45.455 28.09 0.58 44.28 4.75
502 506 4.756642 CACATCGATGGTTTATGTGGCTAT 59.243 41.667 28.09 0.00 44.28 2.97
505 509 4.631131 TCGATGGTTTATGTGGCTATCAG 58.369 43.478 0.00 0.00 0.00 2.90
508 512 4.584638 TGGTTTATGTGGCTATCAGGTT 57.415 40.909 0.00 0.00 0.00 3.50
509 513 4.269183 TGGTTTATGTGGCTATCAGGTTG 58.731 43.478 0.00 0.00 0.00 3.77
510 514 4.263727 TGGTTTATGTGGCTATCAGGTTGT 60.264 41.667 0.00 0.00 0.00 3.32
511 515 4.096382 GGTTTATGTGGCTATCAGGTTGTG 59.904 45.833 0.00 0.00 0.00 3.33
512 516 1.755179 ATGTGGCTATCAGGTTGTGC 58.245 50.000 0.00 0.00 0.00 4.57
513 517 0.692476 TGTGGCTATCAGGTTGTGCT 59.308 50.000 0.00 0.00 0.00 4.40
514 518 1.073763 TGTGGCTATCAGGTTGTGCTT 59.926 47.619 0.00 0.00 0.00 3.91
516 520 2.558359 GTGGCTATCAGGTTGTGCTTTT 59.442 45.455 0.00 0.00 0.00 2.27
517 521 3.005791 GTGGCTATCAGGTTGTGCTTTTT 59.994 43.478 0.00 0.00 0.00 1.94
635 707 5.132502 CCTGATAGCCACATAAACCATCAA 58.867 41.667 0.00 0.00 0.00 2.57
636 708 5.009010 CCTGATAGCCACATAAACCATCAAC 59.991 44.000 0.00 0.00 0.00 3.18
673 752 3.798548 GCGAAAAAGGTCCAGAAAATGCA 60.799 43.478 0.00 0.00 0.00 3.96
674 753 3.983344 CGAAAAAGGTCCAGAAAATGCAG 59.017 43.478 0.00 0.00 0.00 4.41
751 848 6.477669 AATCTAGAATGTGCGCATAATCAG 57.522 37.500 22.03 16.49 34.39 2.90
752 849 4.948847 TCTAGAATGTGCGCATAATCAGT 58.051 39.130 22.03 11.38 34.39 3.41
781 878 5.885230 GCAAATAGCTGCCATATATCACA 57.115 39.130 0.00 0.00 41.15 3.58
782 879 6.258230 GCAAATAGCTGCCATATATCACAA 57.742 37.500 0.00 0.00 41.15 3.33
783 880 6.680810 GCAAATAGCTGCCATATATCACAAA 58.319 36.000 0.00 0.00 41.15 2.83
784 881 7.318141 GCAAATAGCTGCCATATATCACAAAT 58.682 34.615 0.00 0.00 41.15 2.32
785 882 7.816031 GCAAATAGCTGCCATATATCACAAATT 59.184 33.333 0.00 0.00 41.15 1.82
789 886 9.745018 ATAGCTGCCATATATCACAAATTAAGT 57.255 29.630 0.00 0.00 0.00 2.24
791 888 9.224267 AGCTGCCATATATCACAAATTAAGTAG 57.776 33.333 0.00 0.00 0.00 2.57
800 897 5.730550 TCACAAATTAAGTAGAGATGCGGT 58.269 37.500 0.00 0.00 0.00 5.68
801 898 6.170506 TCACAAATTAAGTAGAGATGCGGTT 58.829 36.000 0.00 0.00 0.00 4.44
802 899 6.092122 TCACAAATTAAGTAGAGATGCGGTTG 59.908 38.462 0.00 0.00 0.00 3.77
803 900 5.938125 ACAAATTAAGTAGAGATGCGGTTGT 59.062 36.000 0.00 0.00 0.00 3.32
804 901 6.430000 ACAAATTAAGTAGAGATGCGGTTGTT 59.570 34.615 0.00 0.00 0.00 2.83
805 902 7.040686 ACAAATTAAGTAGAGATGCGGTTGTTT 60.041 33.333 0.00 0.00 0.00 2.83
806 903 5.856126 TTAAGTAGAGATGCGGTTGTTTG 57.144 39.130 0.00 0.00 0.00 2.93
808 905 3.067106 AGTAGAGATGCGGTTGTTTGTG 58.933 45.455 0.00 0.00 0.00 3.33
809 906 1.238439 AGAGATGCGGTTGTTTGTGG 58.762 50.000 0.00 0.00 0.00 4.17
810 907 0.387239 GAGATGCGGTTGTTTGTGGC 60.387 55.000 0.00 0.00 0.00 5.01
811 908 1.372872 GATGCGGTTGTTTGTGGCC 60.373 57.895 0.00 0.00 0.00 5.36
815 912 1.813192 CGGTTGTTTGTGGCCACTT 59.187 52.632 34.75 0.00 0.00 3.16
816 913 0.174617 CGGTTGTTTGTGGCCACTTT 59.825 50.000 34.75 0.00 0.00 2.66
817 914 1.650825 GGTTGTTTGTGGCCACTTTG 58.349 50.000 34.75 0.00 0.00 2.77
819 916 2.267426 GTTGTTTGTGGCCACTTTGTC 58.733 47.619 34.75 20.15 0.00 3.18
822 919 0.459489 TTTGTGGCCACTTTGTCTGC 59.541 50.000 34.75 7.37 0.00 4.26
824 921 0.682532 TGTGGCCACTTTGTCTGCAA 60.683 50.000 34.75 9.34 0.00 4.08
825 922 0.031178 GTGGCCACTTTGTCTGCAAG 59.969 55.000 29.12 0.00 35.82 4.01
903 1057 5.048294 GTCATTTTCAACTCCGGGTATTTGT 60.048 40.000 0.00 0.00 0.00 2.83
904 1058 4.839668 TTTTCAACTCCGGGTATTTGTG 57.160 40.909 0.00 0.00 0.00 3.33
905 1059 3.495434 TTCAACTCCGGGTATTTGTGT 57.505 42.857 0.00 0.00 0.00 3.72
906 1060 2.773487 TCAACTCCGGGTATTTGTGTG 58.227 47.619 0.00 0.00 0.00 3.82
958 1133 2.360600 GGCGTACCAACCATGCCA 60.361 61.111 0.73 0.00 45.72 4.92
964 1139 0.258484 TACCAACCATGCCAGATGGG 59.742 55.000 6.51 0.00 43.32 4.00
975 1150 1.544825 CCAGATGGGTGGTGAGTCGT 61.545 60.000 0.00 0.00 32.32 4.34
976 1151 0.108615 CAGATGGGTGGTGAGTCGTC 60.109 60.000 0.00 0.00 0.00 4.20
977 1152 1.153823 GATGGGTGGTGAGTCGTCG 60.154 63.158 0.00 0.00 0.00 5.12
1053 1232 3.998099 AGGCTTTTCTTCTTTCTGCAC 57.002 42.857 0.00 0.00 0.00 4.57
1185 1364 0.391263 CCGGTAAGTCCCTTGCACTC 60.391 60.000 0.00 0.00 0.00 3.51
1186 1365 0.320374 CGGTAAGTCCCTTGCACTCA 59.680 55.000 0.00 0.00 0.00 3.41
1194 1373 4.404691 CTTGCACTCAAGGTCCCC 57.595 61.111 0.00 0.00 44.53 4.81
1195 1374 1.763770 CTTGCACTCAAGGTCCCCT 59.236 57.895 0.00 0.00 44.53 4.79
1198 1377 1.002011 GCACTCAAGGTCCCCTTCC 60.002 63.158 0.00 0.00 42.67 3.46
1199 1378 1.492993 GCACTCAAGGTCCCCTTCCT 61.493 60.000 0.00 0.00 42.67 3.36
1200 1379 0.326264 CACTCAAGGTCCCCTTCCTG 59.674 60.000 0.00 0.00 42.67 3.86
1206 1406 1.369403 AGGTCCCCTTCCTGTTTACC 58.631 55.000 0.00 0.00 33.62 2.85
1210 1410 0.981943 CCCCTTCCTGTTTACCGTCT 59.018 55.000 0.00 0.00 0.00 4.18
1211 1411 2.181975 CCCCTTCCTGTTTACCGTCTA 58.818 52.381 0.00 0.00 0.00 2.59
1213 1413 3.199289 CCCCTTCCTGTTTACCGTCTATT 59.801 47.826 0.00 0.00 0.00 1.73
1218 1418 6.755607 CCTTCCTGTTTACCGTCTATTAGTTC 59.244 42.308 0.00 0.00 0.00 3.01
1222 1422 6.012658 TGTTTACCGTCTATTAGTTCGTGT 57.987 37.500 8.98 8.76 0.00 4.49
1235 1435 2.693250 TTCGTGTGGCTGACGACCTG 62.693 60.000 10.43 0.00 45.11 4.00
1238 1438 3.626924 GTGGCTGACGACCTGGGT 61.627 66.667 0.00 0.00 0.00 4.51
1240 1440 3.626924 GGCTGACGACCTGGGTGT 61.627 66.667 0.00 0.00 0.00 4.16
1241 1441 2.357517 GCTGACGACCTGGGTGTG 60.358 66.667 0.00 0.00 0.00 3.82
1250 1465 2.433446 CTGGGTGTGAAGCCAGCT 59.567 61.111 10.73 0.00 33.43 4.24
1313 1528 1.306642 ACGTCGACATCTCGGAGCTT 61.307 55.000 17.16 0.00 40.58 3.74
1349 1568 4.796231 CTCGAGGTCAACGGCCGG 62.796 72.222 31.76 13.23 0.00 6.13
1386 1605 2.355363 CGTTCCGCGACAAGGTCA 60.355 61.111 8.23 0.00 44.77 4.02
1389 1608 2.867855 TTCCGCGACAAGGTCAGCT 61.868 57.895 8.23 0.00 32.91 4.24
1421 1640 4.560856 CTCTTCGCCTCGCCCGAG 62.561 72.222 10.56 10.56 41.63 4.63
1451 1670 1.562008 TCCATTTCAGGTGCCCGATTA 59.438 47.619 0.00 0.00 0.00 1.75
1453 1672 2.958355 CCATTTCAGGTGCCCGATTATT 59.042 45.455 0.00 0.00 0.00 1.40
1454 1673 3.384467 CCATTTCAGGTGCCCGATTATTT 59.616 43.478 0.00 0.00 0.00 1.40
1456 1675 3.644966 TTCAGGTGCCCGATTATTTCT 57.355 42.857 0.00 0.00 0.00 2.52
1457 1676 3.194005 TCAGGTGCCCGATTATTTCTC 57.806 47.619 0.00 0.00 0.00 2.87
1461 1680 2.158813 GGTGCCCGATTATTTCTCCTGA 60.159 50.000 0.00 0.00 0.00 3.86
1462 1681 2.872858 GTGCCCGATTATTTCTCCTGAC 59.127 50.000 0.00 0.00 0.00 3.51
1463 1682 2.771943 TGCCCGATTATTTCTCCTGACT 59.228 45.455 0.00 0.00 0.00 3.41
1464 1683 3.134458 GCCCGATTATTTCTCCTGACTG 58.866 50.000 0.00 0.00 0.00 3.51
1465 1684 3.134458 CCCGATTATTTCTCCTGACTGC 58.866 50.000 0.00 0.00 0.00 4.40
1466 1685 3.134458 CCGATTATTTCTCCTGACTGCC 58.866 50.000 0.00 0.00 0.00 4.85
1467 1686 3.432186 CCGATTATTTCTCCTGACTGCCA 60.432 47.826 0.00 0.00 0.00 4.92
1468 1687 3.557595 CGATTATTTCTCCTGACTGCCAC 59.442 47.826 0.00 0.00 0.00 5.01
1469 1688 4.681781 CGATTATTTCTCCTGACTGCCACT 60.682 45.833 0.00 0.00 0.00 4.00
1470 1689 2.777832 ATTTCTCCTGACTGCCACTC 57.222 50.000 0.00 0.00 0.00 3.51
1471 1690 0.687354 TTTCTCCTGACTGCCACTCC 59.313 55.000 0.00 0.00 0.00 3.85
1472 1691 1.536073 TTCTCCTGACTGCCACTCCG 61.536 60.000 0.00 0.00 0.00 4.63
1473 1692 3.655810 CTCCTGACTGCCACTCCGC 62.656 68.421 0.00 0.00 0.00 5.54
1474 1693 4.767255 CCTGACTGCCACTCCGCC 62.767 72.222 0.00 0.00 0.00 6.13
1479 1698 4.473520 CTGCCACTCCGCCGGAAT 62.474 66.667 7.50 0.00 0.00 3.01
1480 1699 4.467084 TGCCACTCCGCCGGAATC 62.467 66.667 7.50 0.00 0.00 2.52
1484 1703 1.521681 CACTCCGCCGGAATCCTTC 60.522 63.158 7.50 0.00 0.00 3.46
1485 1704 2.109181 CTCCGCCGGAATCCTTCC 59.891 66.667 7.50 0.00 46.62 3.46
1496 1715 3.892284 GGAATCCTTCCTTCCTTCCTTC 58.108 50.000 0.00 0.00 46.57 3.46
1497 1716 3.372133 GGAATCCTTCCTTCCTTCCTTCC 60.372 52.174 0.00 0.00 46.57 3.46
1498 1717 2.743131 TCCTTCCTTCCTTCCTTCCT 57.257 50.000 0.00 0.00 0.00 3.36
1503 1722 3.005529 TCCTTCCTTCCTTCCTTCCTT 57.994 47.619 0.00 0.00 0.00 3.36
1504 1723 2.913617 TCCTTCCTTCCTTCCTTCCTTC 59.086 50.000 0.00 0.00 0.00 3.46
1506 1725 2.743131 TCCTTCCTTCCTTCCTTCCT 57.257 50.000 0.00 0.00 0.00 3.36
1507 1726 3.005529 TCCTTCCTTCCTTCCTTCCTT 57.994 47.619 0.00 0.00 0.00 3.36
1508 1727 2.913617 TCCTTCCTTCCTTCCTTCCTTC 59.086 50.000 0.00 0.00 0.00 3.46
1511 1730 3.005529 TCCTTCCTTCCTTCCTTCCTT 57.994 47.619 0.00 0.00 0.00 3.36
1516 1735 4.694280 TCCTTCCTTCCTTCCTTCTCTA 57.306 45.455 0.00 0.00 0.00 2.43
1517 1736 5.024803 TCCTTCCTTCCTTCCTTCTCTAA 57.975 43.478 0.00 0.00 0.00 2.10
1518 1737 4.778427 TCCTTCCTTCCTTCCTTCTCTAAC 59.222 45.833 0.00 0.00 0.00 2.34
1519 1738 4.080807 CCTTCCTTCCTTCCTTCTCTAACC 60.081 50.000 0.00 0.00 0.00 2.85
1520 1739 3.097614 TCCTTCCTTCCTTCTCTAACCG 58.902 50.000 0.00 0.00 0.00 4.44
1521 1740 2.418884 CCTTCCTTCCTTCTCTAACCGC 60.419 54.545 0.00 0.00 0.00 5.68
1522 1741 1.933021 TCCTTCCTTCTCTAACCGCA 58.067 50.000 0.00 0.00 0.00 5.69
1523 1742 2.467880 TCCTTCCTTCTCTAACCGCAT 58.532 47.619 0.00 0.00 0.00 4.73
1524 1743 3.638860 TCCTTCCTTCTCTAACCGCATA 58.361 45.455 0.00 0.00 0.00 3.14
1525 1744 4.223953 TCCTTCCTTCTCTAACCGCATAT 58.776 43.478 0.00 0.00 0.00 1.78
1526 1745 4.281182 TCCTTCCTTCTCTAACCGCATATC 59.719 45.833 0.00 0.00 0.00 1.63
1527 1746 4.282195 CCTTCCTTCTCTAACCGCATATCT 59.718 45.833 0.00 0.00 0.00 1.98
1528 1747 4.855715 TCCTTCTCTAACCGCATATCTG 57.144 45.455 0.00 0.00 0.00 2.90
1529 1748 3.005897 TCCTTCTCTAACCGCATATCTGC 59.994 47.826 0.00 0.00 45.31 4.26
1530 1749 3.006323 CCTTCTCTAACCGCATATCTGCT 59.994 47.826 1.28 0.00 46.65 4.24
1531 1750 4.502259 CCTTCTCTAACCGCATATCTGCTT 60.502 45.833 1.28 0.00 46.65 3.91
1532 1751 4.672587 TCTCTAACCGCATATCTGCTTT 57.327 40.909 1.28 0.00 46.65 3.51
1533 1752 4.621991 TCTCTAACCGCATATCTGCTTTC 58.378 43.478 1.28 0.00 46.65 2.62
1534 1753 4.342378 TCTCTAACCGCATATCTGCTTTCT 59.658 41.667 1.28 0.00 46.65 2.52
1535 1754 4.371786 TCTAACCGCATATCTGCTTTCTG 58.628 43.478 1.28 0.00 46.65 3.02
1536 1755 1.303309 ACCGCATATCTGCTTTCTGC 58.697 50.000 1.28 0.00 46.65 4.26
1537 1756 3.723347 CGCATATCTGCTTTCTGCG 57.277 52.632 1.28 0.62 46.65 5.18
1543 1762 3.483959 CTGCTTTCTGCGGCTCTC 58.516 61.111 0.00 0.00 46.63 3.20
1544 1763 2.046892 TGCTTTCTGCGGCTCTCC 60.047 61.111 0.00 0.00 46.63 3.71
1545 1764 2.267324 GCTTTCTGCGGCTCTCCT 59.733 61.111 0.00 0.00 0.00 3.69
1546 1765 1.257750 TGCTTTCTGCGGCTCTCCTA 61.258 55.000 0.00 0.00 46.63 2.94
1550 1769 0.257905 TTCTGCGGCTCTCCTACCTA 59.742 55.000 0.00 0.00 0.00 3.08
1553 1772 2.553727 GCGGCTCTCCTACCTACCG 61.554 68.421 0.00 0.00 43.37 4.02
1573 1799 1.078848 CCAGGCCCTCTGAAGAACG 60.079 63.158 0.00 0.00 46.18 3.95
1686 1912 1.153429 GTACCACATCCGGCAGGTC 60.153 63.158 1.81 1.02 39.05 3.85
1758 1985 1.530655 ACACCTGCCCCCGAAAAAG 60.531 57.895 0.00 0.00 0.00 2.27
1773 2000 2.682256 AAAAGTTCGACGCCGACGGA 62.682 55.000 20.50 0.00 45.50 4.69
1774 2001 3.606065 AAGTTCGACGCCGACGGAG 62.606 63.158 20.50 18.44 45.50 4.63
1779 2006 4.477975 GACGCCGACGGAGACCTG 62.478 72.222 25.04 4.99 46.04 4.00
1785 2012 1.352404 CGACGGAGACCTGATCGAC 59.648 63.158 0.00 0.00 34.77 4.20
1788 2015 1.090625 ACGGAGACCTGATCGACTCG 61.091 60.000 0.00 0.00 0.00 4.18
1812 2039 1.601171 CAAGGAGCAGGTCAGGAGG 59.399 63.158 1.20 0.00 0.00 4.30
1856 2083 3.333219 CCTCAGGCTCCAGGGCAA 61.333 66.667 1.51 0.00 43.56 4.52
1857 2084 2.271497 CTCAGGCTCCAGGGCAAG 59.729 66.667 0.00 0.00 43.56 4.01
1858 2085 2.530151 TCAGGCTCCAGGGCAAGT 60.530 61.111 0.00 0.00 43.56 3.16
1859 2086 2.045536 CAGGCTCCAGGGCAAGTC 60.046 66.667 0.00 0.00 43.56 3.01
1860 2087 2.204059 AGGCTCCAGGGCAAGTCT 60.204 61.111 0.00 0.00 43.56 3.24
1861 2088 2.045536 GGCTCCAGGGCAAGTCTG 60.046 66.667 0.00 0.00 40.53 3.51
1862 2089 2.596851 GGCTCCAGGGCAAGTCTGA 61.597 63.158 0.00 0.00 40.53 3.27
1863 2090 1.376466 GCTCCAGGGCAAGTCTGAA 59.624 57.895 0.00 0.00 34.36 3.02
1864 2091 0.957888 GCTCCAGGGCAAGTCTGAAC 60.958 60.000 0.00 0.00 34.36 3.18
1865 2092 0.397941 CTCCAGGGCAAGTCTGAACA 59.602 55.000 0.00 0.00 34.36 3.18
1866 2093 0.397941 TCCAGGGCAAGTCTGAACAG 59.602 55.000 0.00 0.00 34.36 3.16
1867 2094 0.607489 CCAGGGCAAGTCTGAACAGG 60.607 60.000 1.93 0.00 34.36 4.00
1919 2148 1.480137 GAGTGGTAGTGCTCTGCTCAT 59.520 52.381 3.89 0.00 0.00 2.90
1927 2156 4.484537 AGTGCTCTGCTCATTAGATTGT 57.515 40.909 0.00 0.00 0.00 2.71
1961 2190 4.441792 GTCACAAACTCCAAAAGCCAAAT 58.558 39.130 0.00 0.00 0.00 2.32
1974 2203 3.607490 AGCCAAATCCATATGCTCCTT 57.393 42.857 0.00 0.00 0.00 3.36
1986 2215 0.106868 TGCTCCTTGATGCTCCATGG 60.107 55.000 4.97 4.97 33.91 3.66
1996 2225 3.654321 TGATGCTCCATGGTATCTGGAAT 59.346 43.478 12.58 0.00 42.12 3.01
2010 2248 6.149142 GGTATCTGGAATGATTCTTCATCTGC 59.851 42.308 5.03 0.00 41.83 4.26
2015 2253 4.025061 GGAATGATTCTTCATCTGCGACTG 60.025 45.833 5.03 0.00 41.83 3.51
2017 2255 4.192429 TGATTCTTCATCTGCGACTGAA 57.808 40.909 0.00 0.00 32.34 3.02
2080 2318 5.782845 TCTTGCCCCTTGGTAATTTTGTTAT 59.217 36.000 0.00 0.00 35.54 1.89
2081 2319 6.954684 TCTTGCCCCTTGGTAATTTTGTTATA 59.045 34.615 0.00 0.00 35.54 0.98
2082 2320 7.621683 TCTTGCCCCTTGGTAATTTTGTTATAT 59.378 33.333 0.00 0.00 35.54 0.86
2083 2321 7.118496 TGCCCCTTGGTAATTTTGTTATATG 57.882 36.000 0.00 0.00 0.00 1.78
2084 2322 6.098982 TGCCCCTTGGTAATTTTGTTATATGG 59.901 38.462 0.00 0.00 0.00 2.74
2085 2323 6.463755 GCCCCTTGGTAATTTTGTTATATGGG 60.464 42.308 0.00 0.00 0.00 4.00
2086 2324 6.463755 CCCCTTGGTAATTTTGTTATATGGGC 60.464 42.308 0.00 0.00 0.00 5.36
2087 2325 6.098982 CCCTTGGTAATTTTGTTATATGGGCA 59.901 38.462 0.00 0.00 0.00 5.36
2088 2326 7.209475 CCTTGGTAATTTTGTTATATGGGCAG 58.791 38.462 0.00 0.00 0.00 4.85
2089 2327 6.155475 TGGTAATTTTGTTATATGGGCAGC 57.845 37.500 0.00 0.00 0.00 5.25
2090 2328 5.069781 TGGTAATTTTGTTATATGGGCAGCC 59.930 40.000 1.26 1.26 0.00 4.85
2091 2329 5.304357 GGTAATTTTGTTATATGGGCAGCCT 59.696 40.000 12.43 0.00 0.00 4.58
2092 2330 5.955961 AATTTTGTTATATGGGCAGCCTT 57.044 34.783 12.43 1.66 0.00 4.35
2093 2331 7.014808 GGTAATTTTGTTATATGGGCAGCCTTA 59.985 37.037 12.43 4.17 0.00 2.69
2094 2332 5.845391 TTTTGTTATATGGGCAGCCTTAC 57.155 39.130 12.43 0.00 0.00 2.34
2095 2333 4.788925 TTGTTATATGGGCAGCCTTACT 57.211 40.909 12.43 0.00 0.00 2.24
2096 2334 5.897851 TTGTTATATGGGCAGCCTTACTA 57.102 39.130 12.43 0.00 0.00 1.82
2097 2335 6.448369 TTGTTATATGGGCAGCCTTACTAT 57.552 37.500 12.43 6.17 0.00 2.12
2098 2336 6.049955 TGTTATATGGGCAGCCTTACTATC 57.950 41.667 12.43 0.00 0.00 2.08
2099 2337 5.785423 TGTTATATGGGCAGCCTTACTATCT 59.215 40.000 12.43 0.00 0.00 1.98
2100 2338 4.833478 ATATGGGCAGCCTTACTATCTG 57.167 45.455 12.43 0.00 0.00 2.90
2101 2339 1.879575 TGGGCAGCCTTACTATCTGT 58.120 50.000 12.43 0.00 0.00 3.41
2102 2340 3.040655 TGGGCAGCCTTACTATCTGTA 57.959 47.619 12.43 0.00 0.00 2.74
2103 2341 3.380393 TGGGCAGCCTTACTATCTGTAA 58.620 45.455 12.43 0.00 38.67 2.41
2104 2342 3.134081 TGGGCAGCCTTACTATCTGTAAC 59.866 47.826 12.43 0.00 36.33 2.50
2105 2343 3.134081 GGGCAGCCTTACTATCTGTAACA 59.866 47.826 12.43 0.00 36.33 2.41
2106 2344 4.202367 GGGCAGCCTTACTATCTGTAACAT 60.202 45.833 12.43 0.00 36.33 2.71
2107 2345 4.752101 GGCAGCCTTACTATCTGTAACATG 59.248 45.833 3.29 0.00 36.33 3.21
2108 2346 4.212214 GCAGCCTTACTATCTGTAACATGC 59.788 45.833 0.00 0.00 36.33 4.06
2109 2347 4.752101 CAGCCTTACTATCTGTAACATGCC 59.248 45.833 0.00 0.00 36.33 4.40
2110 2348 3.741344 GCCTTACTATCTGTAACATGCCG 59.259 47.826 0.00 0.00 36.33 5.69
2113 2351 1.139989 CTATCTGTAACATGCCGGCG 58.860 55.000 23.90 11.34 0.00 6.46
2140 2378 3.107601 TGCTTAGCCAGGTAGATTCTGT 58.892 45.455 0.29 0.00 0.00 3.41
2147 2385 3.798202 CCAGGTAGATTCTGTAAGGCAC 58.202 50.000 0.00 0.00 0.00 5.01
2207 2452 4.688413 GTCTCCTCTCAAGTTTTAGCACAG 59.312 45.833 0.00 0.00 0.00 3.66
2208 2453 4.588951 TCTCCTCTCAAGTTTTAGCACAGA 59.411 41.667 0.00 0.00 0.00 3.41
2219 2464 7.081526 AGTTTTAGCACAGAAGCATGAATAG 57.918 36.000 0.00 0.00 36.85 1.73
2237 2482 6.779860 TGAATAGCCCTAATATCAACTTCCC 58.220 40.000 0.00 0.00 0.00 3.97
2334 2588 4.392921 AGTGAAGGTAACCATCTGATCG 57.607 45.455 0.00 0.00 37.17 3.69
2356 2610 1.888018 CCACTTCCTTGGCAGCATG 59.112 57.895 0.00 0.00 40.87 4.06
2433 2700 2.930950 TGCAGAAAAGCACCTTACACT 58.069 42.857 0.00 0.00 40.11 3.55
2434 2701 2.618241 TGCAGAAAAGCACCTTACACTG 59.382 45.455 0.00 0.00 40.11 3.66
2435 2702 2.878406 GCAGAAAAGCACCTTACACTGA 59.122 45.455 0.00 0.00 0.00 3.41
2436 2703 3.503748 GCAGAAAAGCACCTTACACTGAT 59.496 43.478 0.00 0.00 0.00 2.90
2452 2719 3.627577 CACTGATAAAAGTTCCATCCCGG 59.372 47.826 0.00 0.00 0.00 5.73
2461 2728 2.813226 TTCCATCCCGGCCTCGTTTG 62.813 60.000 0.00 0.00 33.95 2.93
2481 2763 2.616376 TGTTCACTCCATTTGTGGTTCG 59.384 45.455 0.00 0.00 36.21 3.95
2485 2767 1.541147 ACTCCATTTGTGGTTCGCATG 59.459 47.619 0.00 0.00 0.00 4.06
2488 2770 1.269174 CCATTTGTGGTTCGCATGTCA 59.731 47.619 0.00 0.00 0.00 3.58
2491 2773 1.889545 TTGTGGTTCGCATGTCATCA 58.110 45.000 0.00 0.00 0.00 3.07
2492 2774 1.155889 TGTGGTTCGCATGTCATCAC 58.844 50.000 0.00 0.00 0.00 3.06
2503 2785 2.162319 TGTCATCACTGTGCGCTTTA 57.838 45.000 9.73 0.00 0.00 1.85
2512 2794 1.590238 CTGTGCGCTTTAGGATTCTCG 59.410 52.381 9.73 0.00 0.00 4.04
2525 2808 0.176680 ATTCTCGCCCTACAGTGCAG 59.823 55.000 0.00 0.00 0.00 4.41
2540 2823 0.680921 TGCAGCAGGTTTAGCCATCC 60.681 55.000 0.00 0.00 40.61 3.51
2543 2826 1.747355 CAGCAGGTTTAGCCATCCAAG 59.253 52.381 0.00 0.00 40.61 3.61
2553 2836 1.342174 AGCCATCCAAGCAACAACAAG 59.658 47.619 0.00 0.00 0.00 3.16
2576 2859 2.148768 CCCCCAAAAAGACGTGTAGAC 58.851 52.381 0.00 0.00 0.00 2.59
2583 2866 5.238650 CCAAAAAGACGTGTAGACAATCCTT 59.761 40.000 0.00 0.00 0.00 3.36
2592 2876 5.221263 CGTGTAGACAATCCTTAGGTGCTAT 60.221 44.000 0.00 0.00 0.00 2.97
2625 2909 9.270640 ACAAATTTCAAGTTAAAATATGCTGCA 57.729 25.926 4.13 4.13 0.00 4.41
2664 9169 9.646427 TTTTTATGAATAATAACCTTTTGCGCT 57.354 25.926 9.73 0.00 30.21 5.92
2669 9174 8.850454 TGAATAATAACCTTTTGCGCTTTATC 57.150 30.769 9.73 0.00 0.00 1.75
2724 11898 8.920509 AAAATAACAGTTGTGTTGGTTTCTAC 57.079 30.769 0.00 0.00 46.75 2.59
2736 12555 9.072375 TGTGTTGGTTTCTACAATCATTTATGA 57.928 29.630 0.00 0.00 41.70 2.15
2804 12623 7.054491 AGAAGATTGTTATTGGTTTTGCACT 57.946 32.000 0.00 0.00 0.00 4.40
2809 12628 5.843673 TGTTATTGGTTTTGCACTCAAGA 57.156 34.783 0.00 0.00 33.12 3.02
2818 12637 5.689068 GGTTTTGCACTCAAGATTCAGAAAG 59.311 40.000 0.00 0.00 33.12 2.62
2825 12644 3.067106 TCAAGATTCAGAAAGGCGACAC 58.933 45.455 0.00 0.00 0.00 3.67
2827 12646 1.347707 AGATTCAGAAAGGCGACACCA 59.652 47.619 0.00 0.00 43.14 4.17
2837 12656 4.755266 AAGGCGACACCAGTAGAAATAT 57.245 40.909 0.00 0.00 43.14 1.28
2843 12662 5.232414 GCGACACCAGTAGAAATATGAAGTC 59.768 44.000 0.00 0.00 0.00 3.01
2850 12669 8.960591 ACCAGTAGAAATATGAAGTCCAAAATG 58.039 33.333 0.00 0.00 0.00 2.32
2856 12675 9.865321 AGAAATATGAAGTCCAAAATGAACATG 57.135 29.630 0.00 0.00 0.00 3.21
2857 12676 9.643693 GAAATATGAAGTCCAAAATGAACATGT 57.356 29.630 0.00 0.00 0.00 3.21
2858 12677 9.643693 AAATATGAAGTCCAAAATGAACATGTC 57.356 29.630 0.00 0.00 0.00 3.06
2859 12678 5.452078 TGAAGTCCAAAATGAACATGTCC 57.548 39.130 0.00 0.00 0.00 4.02
2860 12679 5.139727 TGAAGTCCAAAATGAACATGTCCT 58.860 37.500 0.00 0.00 0.00 3.85
2861 12680 5.009911 TGAAGTCCAAAATGAACATGTCCTG 59.990 40.000 0.00 0.00 0.00 3.86
2863 12682 4.763793 AGTCCAAAATGAACATGTCCTGAG 59.236 41.667 0.00 0.00 0.00 3.35
2864 12683 4.761739 GTCCAAAATGAACATGTCCTGAGA 59.238 41.667 0.00 0.00 0.00 3.27
2865 12684 5.241506 GTCCAAAATGAACATGTCCTGAGAA 59.758 40.000 0.00 0.00 0.00 2.87
2866 12685 6.012113 TCCAAAATGAACATGTCCTGAGAAT 58.988 36.000 0.00 0.00 0.00 2.40
2868 12687 7.669304 TCCAAAATGAACATGTCCTGAGAATAA 59.331 33.333 0.00 0.00 0.00 1.40
2869 12688 8.306038 CCAAAATGAACATGTCCTGAGAATAAA 58.694 33.333 0.00 0.00 0.00 1.40
2874 12693 8.737168 TGAACATGTCCTGAGAATAAAATAGG 57.263 34.615 0.00 0.00 0.00 2.57
2875 12694 8.328758 TGAACATGTCCTGAGAATAAAATAGGT 58.671 33.333 0.00 0.00 0.00 3.08
2876 12695 9.832445 GAACATGTCCTGAGAATAAAATAGGTA 57.168 33.333 0.00 0.00 0.00 3.08
2898 12717 8.367156 AGGTAACATTTTGTGAATAGCAATGTT 58.633 29.630 11.97 11.97 45.52 2.71
2900 12719 9.190858 GTAACATTTTGTGAATAGCAATGTTGA 57.809 29.630 15.50 1.95 44.14 3.18
2901 12720 8.836268 AACATTTTGTGAATAGCAATGTTGAT 57.164 26.923 7.57 0.00 43.26 2.57
2902 12721 9.926158 AACATTTTGTGAATAGCAATGTTGATA 57.074 25.926 7.57 0.00 43.26 2.15
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 0.404040 GTTGATGGGGAAGACCACCA 59.596 55.000 0.00 0.00 44.72 4.17
31 32 3.000819 CGGCCACCTCCCACACTA 61.001 66.667 2.24 0.00 0.00 2.74
47 48 0.379669 GAATGATGCAAGGTGGAGCG 59.620 55.000 0.00 0.00 0.00 5.03
139 140 4.868734 GTCGATCGGAACTAATTTGGAGTT 59.131 41.667 16.41 0.00 39.85 3.01
159 160 8.500837 TTGCAATGTTTATTACAAAGAAGTCG 57.499 30.769 0.00 0.00 40.89 4.18
180 181 6.018589 TGAACGTTGGATGATTAAATTGCA 57.981 33.333 5.00 0.00 0.00 4.08
198 199 4.627467 AGCAGTAGCAGAATAACTTGAACG 59.373 41.667 0.00 0.00 45.49 3.95
314 315 7.876068 TGAGGTTCGTGAAGTAATTTTACAGAT 59.124 33.333 3.50 0.00 36.12 2.90
317 318 7.789273 TTGAGGTTCGTGAAGTAATTTTACA 57.211 32.000 3.50 0.00 36.12 2.41
318 319 9.673454 AATTTGAGGTTCGTGAAGTAATTTTAC 57.327 29.630 0.00 0.00 0.00 2.01
327 328 4.788100 CGCATAAATTTGAGGTTCGTGAAG 59.212 41.667 0.00 0.00 0.00 3.02
333 334 3.782889 AGGCGCATAAATTTGAGGTTC 57.217 42.857 10.83 0.00 0.00 3.62
397 398 6.823182 TGTATGAGTCATAACAGAACCATTGG 59.177 38.462 14.44 0.00 0.00 3.16
408 409 6.033966 TGTCACGATGTGTATGAGTCATAAC 58.966 40.000 14.44 14.11 34.79 1.89
410 411 5.357032 ACTGTCACGATGTGTATGAGTCATA 59.643 40.000 8.84 8.84 34.79 2.15
422 426 8.561738 AGGAAAATTTAATACTGTCACGATGT 57.438 30.769 0.00 0.00 0.00 3.06
423 427 9.490663 GAAGGAAAATTTAATACTGTCACGATG 57.509 33.333 0.00 0.00 0.00 3.84
424 428 9.226606 TGAAGGAAAATTTAATACTGTCACGAT 57.773 29.630 0.00 0.00 0.00 3.73
431 435 9.603921 AATGCCATGAAGGAAAATTTAATACTG 57.396 29.630 0.00 0.00 41.22 2.74
477 481 3.874543 GCCACATAAACCATCGATGTGTA 59.125 43.478 23.27 12.45 45.87 2.90
478 482 2.682856 GCCACATAAACCATCGATGTGT 59.317 45.455 23.27 17.04 45.87 3.72
479 483 2.945008 AGCCACATAAACCATCGATGTG 59.055 45.455 23.27 16.42 46.53 3.21
480 484 3.281727 AGCCACATAAACCATCGATGT 57.718 42.857 23.27 8.37 34.11 3.06
481 485 4.996758 TGATAGCCACATAAACCATCGATG 59.003 41.667 18.76 18.76 0.00 3.84
482 486 5.227569 TGATAGCCACATAAACCATCGAT 57.772 39.130 0.00 0.00 0.00 3.59
483 487 4.503123 CCTGATAGCCACATAAACCATCGA 60.503 45.833 0.00 0.00 0.00 3.59
485 489 4.718961 ACCTGATAGCCACATAAACCATC 58.281 43.478 0.00 0.00 0.00 3.51
486 490 4.796110 ACCTGATAGCCACATAAACCAT 57.204 40.909 0.00 0.00 0.00 3.55
489 493 4.438744 GCACAACCTGATAGCCACATAAAC 60.439 45.833 0.00 0.00 0.00 2.01
490 494 3.694072 GCACAACCTGATAGCCACATAAA 59.306 43.478 0.00 0.00 0.00 1.40
491 495 3.054434 AGCACAACCTGATAGCCACATAA 60.054 43.478 0.00 0.00 0.00 1.90
492 496 2.505407 AGCACAACCTGATAGCCACATA 59.495 45.455 0.00 0.00 0.00 2.29
493 497 1.283029 AGCACAACCTGATAGCCACAT 59.717 47.619 0.00 0.00 0.00 3.21
494 498 0.692476 AGCACAACCTGATAGCCACA 59.308 50.000 0.00 0.00 0.00 4.17
495 499 1.826385 AAGCACAACCTGATAGCCAC 58.174 50.000 0.00 0.00 0.00 5.01
496 500 2.584835 AAAGCACAACCTGATAGCCA 57.415 45.000 0.00 0.00 0.00 4.75
497 501 3.942130 AAAAAGCACAACCTGATAGCC 57.058 42.857 0.00 0.00 0.00 3.93
518 522 4.261031 GCAGTTGCCGTAAGAGAAGAAAAA 60.261 41.667 0.00 0.00 43.02 1.94
520 524 2.806244 GCAGTTGCCGTAAGAGAAGAAA 59.194 45.455 0.00 0.00 43.02 2.52
558 629 4.811969 AGTTGAACCGGTCACATACATA 57.188 40.909 8.04 0.00 35.39 2.29
559 630 3.695830 AGTTGAACCGGTCACATACAT 57.304 42.857 8.04 0.00 35.39 2.29
560 631 3.827876 TCTAGTTGAACCGGTCACATACA 59.172 43.478 8.04 0.00 35.39 2.29
561 632 4.421948 CTCTAGTTGAACCGGTCACATAC 58.578 47.826 8.04 12.00 35.39 2.39
659 738 6.058183 ACACTATATCTGCATTTTCTGGACC 58.942 40.000 0.00 0.00 0.00 4.46
673 752 7.679783 TGCCATGTTTATGCTACACTATATCT 58.320 34.615 0.00 0.00 32.79 1.98
674 753 7.413438 GCTGCCATGTTTATGCTACACTATATC 60.413 40.741 0.00 0.00 32.79 1.63
729 813 5.545588 ACTGATTATGCGCACATTCTAGAT 58.454 37.500 14.90 0.00 37.74 1.98
737 821 1.872952 GCCATACTGATTATGCGCACA 59.127 47.619 14.90 0.00 36.91 4.57
745 829 5.947228 GCTATTTGCTGCCATACTGATTA 57.053 39.130 0.00 0.00 38.95 1.75
777 874 5.730550 ACCGCATCTCTACTTAATTTGTGA 58.269 37.500 0.00 0.00 0.00 3.58
778 875 6.128282 ACAACCGCATCTCTACTTAATTTGTG 60.128 38.462 0.00 0.00 0.00 3.33
779 876 5.938125 ACAACCGCATCTCTACTTAATTTGT 59.062 36.000 0.00 0.00 0.00 2.83
781 878 7.040686 ACAAACAACCGCATCTCTACTTAATTT 60.041 33.333 0.00 0.00 0.00 1.82
782 879 6.430000 ACAAACAACCGCATCTCTACTTAATT 59.570 34.615 0.00 0.00 0.00 1.40
783 880 5.938125 ACAAACAACCGCATCTCTACTTAAT 59.062 36.000 0.00 0.00 0.00 1.40
784 881 5.178623 CACAAACAACCGCATCTCTACTTAA 59.821 40.000 0.00 0.00 0.00 1.85
785 882 4.688879 CACAAACAACCGCATCTCTACTTA 59.311 41.667 0.00 0.00 0.00 2.24
786 883 3.498397 CACAAACAACCGCATCTCTACTT 59.502 43.478 0.00 0.00 0.00 2.24
787 884 3.067106 CACAAACAACCGCATCTCTACT 58.933 45.455 0.00 0.00 0.00 2.57
788 885 2.159627 CCACAAACAACCGCATCTCTAC 59.840 50.000 0.00 0.00 0.00 2.59
789 886 2.422597 CCACAAACAACCGCATCTCTA 58.577 47.619 0.00 0.00 0.00 2.43
790 887 1.238439 CCACAAACAACCGCATCTCT 58.762 50.000 0.00 0.00 0.00 3.10
791 888 0.387239 GCCACAAACAACCGCATCTC 60.387 55.000 0.00 0.00 0.00 2.75
793 890 1.372872 GGCCACAAACAACCGCATC 60.373 57.895 0.00 0.00 0.00 3.91
794 891 2.130426 TGGCCACAAACAACCGCAT 61.130 52.632 0.00 0.00 0.00 4.73
795 892 2.755876 TGGCCACAAACAACCGCA 60.756 55.556 0.00 0.00 0.00 5.69
797 894 0.174617 AAAGTGGCCACAAACAACCG 59.825 50.000 36.39 0.00 0.00 4.44
798 895 1.066502 ACAAAGTGGCCACAAACAACC 60.067 47.619 36.39 8.24 0.00 3.77
800 897 2.094286 CAGACAAAGTGGCCACAAACAA 60.094 45.455 36.39 0.00 0.00 2.83
801 898 1.476085 CAGACAAAGTGGCCACAAACA 59.524 47.619 36.39 0.00 0.00 2.83
802 899 1.802508 GCAGACAAAGTGGCCACAAAC 60.803 52.381 36.39 21.28 0.00 2.93
803 900 0.459489 GCAGACAAAGTGGCCACAAA 59.541 50.000 36.39 0.00 0.00 2.83
804 901 0.682532 TGCAGACAAAGTGGCCACAA 60.683 50.000 36.39 8.23 0.00 3.33
805 902 0.682532 TTGCAGACAAAGTGGCCACA 60.683 50.000 36.39 10.87 31.21 4.17
806 903 0.031178 CTTGCAGACAAAGTGGCCAC 59.969 55.000 29.22 29.22 34.74 5.01
808 905 1.251251 ATCTTGCAGACAAAGTGGCC 58.749 50.000 0.00 0.00 34.74 5.36
809 906 4.418392 CAATATCTTGCAGACAAAGTGGC 58.582 43.478 0.00 0.00 34.74 5.01
822 919 8.883954 TTGATCTACTCTCTTGCAATATCTTG 57.116 34.615 0.00 0.00 35.36 3.02
824 921 9.491675 CATTTGATCTACTCTCTTGCAATATCT 57.508 33.333 0.00 0.00 0.00 1.98
825 922 9.270640 ACATTTGATCTACTCTCTTGCAATATC 57.729 33.333 0.00 0.00 0.00 1.63
827 924 8.886719 CAACATTTGATCTACTCTCTTGCAATA 58.113 33.333 0.00 0.00 0.00 1.90
829 926 6.712095 ACAACATTTGATCTACTCTCTTGCAA 59.288 34.615 0.00 0.00 0.00 4.08
831 928 6.454848 CGACAACATTTGATCTACTCTCTTGC 60.455 42.308 0.00 0.00 0.00 4.01
832 929 6.808704 TCGACAACATTTGATCTACTCTCTTG 59.191 38.462 0.00 0.00 0.00 3.02
869 966 7.362920 CCGGAGTTGAAAATGACCAGAATAATT 60.363 37.037 0.00 0.00 0.00 1.40
888 985 1.700739 TCCACACAAATACCCGGAGTT 59.299 47.619 0.73 0.00 0.00 3.01
903 1057 6.971756 CACGCATCACAATTTATAATTCCACA 59.028 34.615 0.00 0.00 0.00 4.17
904 1058 6.417635 CCACGCATCACAATTTATAATTCCAC 59.582 38.462 0.00 0.00 0.00 4.02
905 1059 6.319911 TCCACGCATCACAATTTATAATTCCA 59.680 34.615 0.00 0.00 0.00 3.53
906 1060 6.734137 TCCACGCATCACAATTTATAATTCC 58.266 36.000 0.00 0.00 0.00 3.01
958 1133 1.595993 CGACGACTCACCACCCATCT 61.596 60.000 0.00 0.00 0.00 2.90
964 1139 2.126965 CGACCGACGACTCACCAC 60.127 66.667 0.00 0.00 45.77 4.16
975 1150 0.959867 TATCGACAACACCCGACCGA 60.960 55.000 0.00 0.00 37.64 4.69
976 1151 0.109179 TTATCGACAACACCCGACCG 60.109 55.000 0.00 0.00 37.64 4.79
977 1152 1.636988 CTTATCGACAACACCCGACC 58.363 55.000 0.00 0.00 37.64 4.79
1053 1232 1.812922 GCGTGATGCACTCTGGAGG 60.813 63.158 0.00 0.00 45.45 4.30
1189 1368 0.689055 ACGGTAAACAGGAAGGGGAC 59.311 55.000 0.00 0.00 0.00 4.46
1192 1371 4.482952 AATAGACGGTAAACAGGAAGGG 57.517 45.455 0.00 0.00 0.00 3.95
1193 1372 6.218108 ACTAATAGACGGTAAACAGGAAGG 57.782 41.667 0.00 0.00 0.00 3.46
1194 1373 6.471519 CGAACTAATAGACGGTAAACAGGAAG 59.528 42.308 0.00 0.00 0.00 3.46
1195 1374 6.071952 ACGAACTAATAGACGGTAAACAGGAA 60.072 38.462 13.29 0.00 0.00 3.36
1198 1377 6.033196 CACACGAACTAATAGACGGTAAACAG 59.967 42.308 13.29 0.00 0.00 3.16
1199 1378 5.858049 CACACGAACTAATAGACGGTAAACA 59.142 40.000 13.29 0.00 0.00 2.83
1200 1379 5.287035 CCACACGAACTAATAGACGGTAAAC 59.713 44.000 13.29 0.00 0.00 2.01
1206 1406 2.852413 CAGCCACACGAACTAATAGACG 59.148 50.000 0.00 2.42 0.00 4.18
1210 1410 2.488937 TCGTCAGCCACACGAACTAATA 59.511 45.455 0.20 0.00 43.13 0.98
1211 1411 1.271379 TCGTCAGCCACACGAACTAAT 59.729 47.619 0.20 0.00 43.13 1.73
1213 1413 2.333291 TCGTCAGCCACACGAACTA 58.667 52.632 0.20 0.00 43.13 2.24
1218 1418 2.734723 CAGGTCGTCAGCCACACG 60.735 66.667 0.00 0.00 38.67 4.49
1222 1422 3.625897 CACCCAGGTCGTCAGCCA 61.626 66.667 0.00 0.00 0.00 4.75
1235 1435 3.368571 GCAGCTGGCTTCACACCC 61.369 66.667 17.12 0.00 40.25 4.61
1238 1438 3.889134 CTCCGCAGCTGGCTTCACA 62.889 63.158 17.12 0.00 41.67 3.58
1240 1440 2.584261 GATCTCCGCAGCTGGCTTCA 62.584 60.000 17.12 0.00 41.67 3.02
1241 1441 1.886777 GATCTCCGCAGCTGGCTTC 60.887 63.158 17.12 0.00 41.67 3.86
1250 1465 2.364186 TCCCTGCAGATCTCCGCA 60.364 61.111 17.39 7.45 36.52 5.69
1313 1528 1.006571 GTCGGTGTTGAGAAGCGGA 60.007 57.895 0.00 0.00 38.96 5.54
1319 1538 1.241990 CCTCGAGGTCGGTGTTGAGA 61.242 60.000 24.04 0.00 40.29 3.27
1386 1605 2.512515 GAAGCAATCGGCCGAGCT 60.513 61.111 33.87 31.81 46.50 4.09
1389 1608 1.899437 AAGAGGAAGCAATCGGCCGA 61.899 55.000 33.12 33.12 46.50 5.54
1421 1640 4.392138 GCACCTGAAATGGAGTAGTTGTAC 59.608 45.833 0.00 0.00 0.00 2.90
1451 1670 1.280421 GGAGTGGCAGTCAGGAGAAAT 59.720 52.381 22.95 0.00 0.00 2.17
1453 1672 1.536073 CGGAGTGGCAGTCAGGAGAA 61.536 60.000 22.95 0.00 0.00 2.87
1454 1673 1.979155 CGGAGTGGCAGTCAGGAGA 60.979 63.158 22.95 0.00 0.00 3.71
1456 1675 3.695606 GCGGAGTGGCAGTCAGGA 61.696 66.667 22.95 0.00 0.00 3.86
1457 1676 4.767255 GGCGGAGTGGCAGTCAGG 62.767 72.222 22.95 14.96 44.08 3.86
1462 1681 4.473520 ATTCCGGCGGAGTGGCAG 62.474 66.667 29.30 0.00 45.16 4.85
1463 1682 4.467084 GATTCCGGCGGAGTGGCA 62.467 66.667 29.31 14.70 45.16 4.92
1465 1684 2.925162 GAAGGATTCCGGCGGAGTGG 62.925 65.000 29.31 0.30 39.83 4.00
1466 1685 1.521681 GAAGGATTCCGGCGGAGTG 60.522 63.158 29.31 0.75 39.83 3.51
1467 1686 2.901042 GAAGGATTCCGGCGGAGT 59.099 61.111 29.30 27.04 39.83 3.85
1476 1695 3.525609 AGGAAGGAAGGAAGGAAGGATTC 59.474 47.826 0.00 0.00 46.67 2.52
1477 1696 3.546840 AGGAAGGAAGGAAGGAAGGATT 58.453 45.455 0.00 0.00 0.00 3.01
1478 1697 3.228589 AGGAAGGAAGGAAGGAAGGAT 57.771 47.619 0.00 0.00 0.00 3.24
1479 1698 2.743131 AGGAAGGAAGGAAGGAAGGA 57.257 50.000 0.00 0.00 0.00 3.36
1480 1699 2.025793 GGAAGGAAGGAAGGAAGGAAGG 60.026 54.545 0.00 0.00 0.00 3.46
1481 1700 2.916269 AGGAAGGAAGGAAGGAAGGAAG 59.084 50.000 0.00 0.00 0.00 3.46
1484 1703 2.025793 GGAAGGAAGGAAGGAAGGAAGG 60.026 54.545 0.00 0.00 0.00 3.46
1485 1704 2.916269 AGGAAGGAAGGAAGGAAGGAAG 59.084 50.000 0.00 0.00 0.00 3.46
1495 1714 3.569135 AGAGAAGGAAGGAAGGAAGGA 57.431 47.619 0.00 0.00 0.00 3.36
1496 1715 4.080807 GGTTAGAGAAGGAAGGAAGGAAGG 60.081 50.000 0.00 0.00 0.00 3.46
1497 1716 4.382147 CGGTTAGAGAAGGAAGGAAGGAAG 60.382 50.000 0.00 0.00 0.00 3.46
1498 1717 3.514309 CGGTTAGAGAAGGAAGGAAGGAA 59.486 47.826 0.00 0.00 0.00 3.36
1503 1722 1.933021 TGCGGTTAGAGAAGGAAGGA 58.067 50.000 0.00 0.00 0.00 3.36
1504 1723 2.990066 ATGCGGTTAGAGAAGGAAGG 57.010 50.000 0.00 0.00 0.00 3.46
1506 1725 4.501571 GCAGATATGCGGTTAGAGAAGGAA 60.502 45.833 0.00 0.00 0.00 3.36
1507 1726 3.005897 GCAGATATGCGGTTAGAGAAGGA 59.994 47.826 0.00 0.00 0.00 3.36
1508 1727 3.006323 AGCAGATATGCGGTTAGAGAAGG 59.994 47.826 6.68 0.00 40.27 3.46
1511 1730 4.342378 AGAAAGCAGATATGCGGTTAGAGA 59.658 41.667 6.68 0.00 40.27 3.10
1516 1735 1.672881 GCAGAAAGCAGATATGCGGTT 59.327 47.619 6.68 5.33 44.79 4.44
1517 1736 1.303309 GCAGAAAGCAGATATGCGGT 58.697 50.000 6.68 0.00 44.79 5.68
1520 1739 0.040603 GCCGCAGAAAGCAGATATGC 60.041 55.000 3.54 3.54 46.13 3.14
1521 1740 1.530293 GAGCCGCAGAAAGCAGATATG 59.470 52.381 0.00 0.00 46.13 1.78
1522 1741 1.415659 AGAGCCGCAGAAAGCAGATAT 59.584 47.619 0.00 0.00 46.13 1.63
1523 1742 0.826715 AGAGCCGCAGAAAGCAGATA 59.173 50.000 0.00 0.00 46.13 1.98
1524 1743 0.461693 GAGAGCCGCAGAAAGCAGAT 60.462 55.000 0.00 0.00 46.13 2.90
1525 1744 1.079543 GAGAGCCGCAGAAAGCAGA 60.080 57.895 0.00 0.00 46.13 4.26
1526 1745 2.105466 GGAGAGCCGCAGAAAGCAG 61.105 63.158 0.00 0.00 46.13 4.24
1527 1746 1.257750 TAGGAGAGCCGCAGAAAGCA 61.258 55.000 0.00 0.00 46.13 3.91
1528 1747 0.808060 GTAGGAGAGCCGCAGAAAGC 60.808 60.000 0.00 0.00 39.96 3.51
1529 1748 0.179097 GGTAGGAGAGCCGCAGAAAG 60.179 60.000 0.00 0.00 39.96 2.62
1530 1749 0.614979 AGGTAGGAGAGCCGCAGAAA 60.615 55.000 0.00 0.00 39.96 2.52
1531 1750 0.257905 TAGGTAGGAGAGCCGCAGAA 59.742 55.000 0.00 0.00 39.96 3.02
1532 1751 0.465824 GTAGGTAGGAGAGCCGCAGA 60.466 60.000 0.00 0.00 39.96 4.26
1533 1752 1.457009 GGTAGGTAGGAGAGCCGCAG 61.457 65.000 0.00 0.00 39.96 5.18
1534 1753 1.455217 GGTAGGTAGGAGAGCCGCA 60.455 63.158 0.00 0.00 39.96 5.69
1535 1754 2.553727 CGGTAGGTAGGAGAGCCGC 61.554 68.421 0.00 0.00 39.96 6.53
1536 1755 1.147824 TCGGTAGGTAGGAGAGCCG 59.852 63.158 0.00 0.00 39.96 5.52
1537 1756 0.822944 GGTCGGTAGGTAGGAGAGCC 60.823 65.000 0.00 0.00 0.00 4.70
1538 1757 0.106819 TGGTCGGTAGGTAGGAGAGC 60.107 60.000 0.00 0.00 0.00 4.09
1539 1758 1.477195 CCTGGTCGGTAGGTAGGAGAG 60.477 61.905 0.00 0.00 0.00 3.20
1540 1759 0.549950 CCTGGTCGGTAGGTAGGAGA 59.450 60.000 0.00 0.00 0.00 3.71
1541 1760 1.108132 GCCTGGTCGGTAGGTAGGAG 61.108 65.000 0.00 0.00 37.64 3.69
1542 1761 1.076485 GCCTGGTCGGTAGGTAGGA 60.076 63.158 0.00 0.00 37.64 2.94
1543 1762 2.132352 GGCCTGGTCGGTAGGTAGG 61.132 68.421 0.00 0.00 37.64 3.18
1544 1763 2.132352 GGGCCTGGTCGGTAGGTAG 61.132 68.421 0.84 0.00 37.64 3.18
1545 1764 2.042639 GGGCCTGGTCGGTAGGTA 60.043 66.667 0.84 0.00 37.64 3.08
1546 1765 3.978410 GAGGGCCTGGTCGGTAGGT 62.978 68.421 12.95 0.00 37.64 3.08
1550 1769 3.846405 TTCAGAGGGCCTGGTCGGT 62.846 63.158 12.95 0.00 43.12 4.69
1553 1772 0.035915 GTTCTTCAGAGGGCCTGGTC 60.036 60.000 12.95 0.00 43.12 4.02
1656 1882 4.063967 TGGTACTGCGACCGGCTG 62.064 66.667 0.00 0.00 42.99 4.85
1657 1883 4.065281 GTGGTACTGCGACCGGCT 62.065 66.667 0.00 0.00 42.99 5.52
1658 1884 3.659089 ATGTGGTACTGCGACCGGC 62.659 63.158 0.00 0.00 42.99 6.13
1659 1885 1.518572 GATGTGGTACTGCGACCGG 60.519 63.158 0.00 0.00 42.99 5.28
1660 1886 1.518572 GGATGTGGTACTGCGACCG 60.519 63.158 0.00 0.00 42.99 4.79
1661 1887 1.518572 CGGATGTGGTACTGCGACC 60.519 63.158 0.00 0.00 40.21 4.79
1662 1888 1.518572 CCGGATGTGGTACTGCGAC 60.519 63.158 0.00 0.00 0.00 5.19
1663 1889 2.889617 CCGGATGTGGTACTGCGA 59.110 61.111 0.00 0.00 0.00 5.10
1664 1890 2.890474 GCCGGATGTGGTACTGCG 60.890 66.667 5.05 0.00 0.00 5.18
1665 1891 1.815421 CTGCCGGATGTGGTACTGC 60.815 63.158 5.05 0.00 0.00 4.40
1666 1892 1.153369 CCTGCCGGATGTGGTACTG 60.153 63.158 5.05 0.00 0.00 2.74
1686 1912 1.165270 GGATGTCAAGAAACACCCCG 58.835 55.000 0.00 0.00 24.65 5.73
1767 1994 1.090625 AGTCGATCAGGTCTCCGTCG 61.091 60.000 0.00 0.00 0.00 5.12
1773 2000 0.542333 TCTCCGAGTCGATCAGGTCT 59.458 55.000 15.64 0.00 0.00 3.85
1774 2001 0.658897 GTCTCCGAGTCGATCAGGTC 59.341 60.000 15.64 1.27 0.00 3.85
1779 2006 0.382515 CCTTGGTCTCCGAGTCGATC 59.617 60.000 15.64 0.00 33.27 3.69
1785 2012 1.515020 CTGCTCCTTGGTCTCCGAG 59.485 63.158 0.00 0.00 34.87 4.63
1788 2015 1.599576 GACCTGCTCCTTGGTCTCC 59.400 63.158 5.05 0.00 46.65 3.71
1812 2039 1.703438 CTTGCAGCGACAGGAGCATC 61.703 60.000 0.00 0.00 36.80 3.91
1853 2080 1.202818 AGTTCCCCTGTTCAGACTTGC 60.203 52.381 1.00 0.00 0.00 4.01
1854 2081 2.104792 TCAGTTCCCCTGTTCAGACTTG 59.895 50.000 1.00 0.00 42.19 3.16
1855 2082 2.408565 TCAGTTCCCCTGTTCAGACTT 58.591 47.619 1.00 0.00 42.19 3.01
1856 2083 2.103153 TCAGTTCCCCTGTTCAGACT 57.897 50.000 1.00 0.00 42.19 3.24
1857 2084 2.704572 CATCAGTTCCCCTGTTCAGAC 58.295 52.381 1.00 0.00 42.19 3.51
1858 2085 1.003580 GCATCAGTTCCCCTGTTCAGA 59.996 52.381 1.00 0.00 42.19 3.27
1859 2086 1.457346 GCATCAGTTCCCCTGTTCAG 58.543 55.000 0.00 0.00 42.19 3.02
1860 2087 0.038166 GGCATCAGTTCCCCTGTTCA 59.962 55.000 0.00 0.00 42.19 3.18
1861 2088 0.329596 AGGCATCAGTTCCCCTGTTC 59.670 55.000 0.00 0.00 42.19 3.18
1862 2089 0.329596 GAGGCATCAGTTCCCCTGTT 59.670 55.000 0.00 0.00 42.19 3.16
1863 2090 1.566298 GGAGGCATCAGTTCCCCTGT 61.566 60.000 0.00 0.00 42.19 4.00
1864 2091 1.225704 GGAGGCATCAGTTCCCCTG 59.774 63.158 0.00 0.00 42.97 4.45
1865 2092 0.625683 ATGGAGGCATCAGTTCCCCT 60.626 55.000 0.00 0.00 0.00 4.79
1866 2093 0.259938 AATGGAGGCATCAGTTCCCC 59.740 55.000 0.00 0.00 0.00 4.81
1867 2094 1.753073 CAAATGGAGGCATCAGTTCCC 59.247 52.381 0.00 0.00 0.00 3.97
1919 2148 4.399303 TGACGATCTGCTCAGACAATCTAA 59.601 41.667 1.15 0.00 40.75 2.10
1927 2156 2.297315 AGTTTGTGACGATCTGCTCAGA 59.703 45.455 1.67 1.67 42.37 3.27
1961 2190 2.039480 GGAGCATCAAGGAGCATATGGA 59.961 50.000 4.56 0.00 36.25 3.41
1974 2203 2.693210 TCCAGATACCATGGAGCATCA 58.307 47.619 21.47 0.00 41.96 3.07
1986 2215 6.128607 CGCAGATGAAGAATCATTCCAGATAC 60.129 42.308 0.00 0.00 46.30 2.24
1996 2225 3.874392 TCAGTCGCAGATGAAGAATCA 57.126 42.857 0.00 0.00 40.67 2.57
2010 2248 0.165944 GCCACCGAAATGTTCAGTCG 59.834 55.000 0.00 0.00 34.58 4.18
2015 2253 0.951558 AGTGTGCCACCGAAATGTTC 59.048 50.000 0.00 0.00 34.49 3.18
2017 2255 2.264005 TTAGTGTGCCACCGAAATGT 57.736 45.000 0.00 0.00 34.49 2.71
2080 2318 3.587498 ACAGATAGTAAGGCTGCCCATA 58.413 45.455 16.57 6.37 33.03 2.74
2081 2319 2.412591 ACAGATAGTAAGGCTGCCCAT 58.587 47.619 16.57 7.49 33.03 4.00
2082 2320 1.879575 ACAGATAGTAAGGCTGCCCA 58.120 50.000 16.57 0.00 33.03 5.36
2083 2321 3.134081 TGTTACAGATAGTAAGGCTGCCC 59.866 47.826 16.57 0.00 43.06 5.36
2084 2322 4.402056 TGTTACAGATAGTAAGGCTGCC 57.598 45.455 11.65 11.65 43.06 4.85
2085 2323 4.212214 GCATGTTACAGATAGTAAGGCTGC 59.788 45.833 0.00 0.00 43.06 5.25
2086 2324 4.752101 GGCATGTTACAGATAGTAAGGCTG 59.248 45.833 0.00 0.00 43.06 4.85
2087 2325 4.501571 CGGCATGTTACAGATAGTAAGGCT 60.502 45.833 0.00 0.00 43.06 4.58
2088 2326 3.741344 CGGCATGTTACAGATAGTAAGGC 59.259 47.826 0.00 0.00 43.06 4.35
2089 2327 4.307432 CCGGCATGTTACAGATAGTAAGG 58.693 47.826 0.00 0.00 43.06 2.69
2090 2328 3.741344 GCCGGCATGTTACAGATAGTAAG 59.259 47.826 24.80 0.00 43.06 2.34
2091 2329 3.724374 GCCGGCATGTTACAGATAGTAA 58.276 45.455 24.80 0.00 40.30 2.24
2092 2330 2.287970 CGCCGGCATGTTACAGATAGTA 60.288 50.000 28.98 0.00 0.00 1.82
2093 2331 1.538204 CGCCGGCATGTTACAGATAGT 60.538 52.381 28.98 0.00 0.00 2.12
2094 2332 1.139989 CGCCGGCATGTTACAGATAG 58.860 55.000 28.98 0.12 0.00 2.08
2095 2333 0.462375 ACGCCGGCATGTTACAGATA 59.538 50.000 28.98 0.00 0.00 1.98
2096 2334 0.810031 GACGCCGGCATGTTACAGAT 60.810 55.000 28.98 0.00 0.00 2.90
2097 2335 1.447140 GACGCCGGCATGTTACAGA 60.447 57.895 28.98 0.00 0.00 3.41
2098 2336 1.089481 ATGACGCCGGCATGTTACAG 61.089 55.000 28.98 9.93 0.00 2.74
2099 2337 0.675208 AATGACGCCGGCATGTTACA 60.675 50.000 28.98 15.93 0.00 2.41
2100 2338 0.450184 AAATGACGCCGGCATGTTAC 59.550 50.000 28.98 10.64 0.00 2.50
2101 2339 0.449786 CAAATGACGCCGGCATGTTA 59.550 50.000 28.98 14.50 0.00 2.41
2102 2340 1.212490 CAAATGACGCCGGCATGTT 59.788 52.632 28.98 12.36 0.00 2.71
2103 2341 2.876955 CAAATGACGCCGGCATGT 59.123 55.556 28.98 17.86 0.00 3.21
2104 2342 2.546645 AAGCAAATGACGCCGGCATG 62.547 55.000 28.98 14.14 0.00 4.06
2105 2343 1.029408 TAAGCAAATGACGCCGGCAT 61.029 50.000 28.98 12.81 0.00 4.40
2106 2344 1.643868 CTAAGCAAATGACGCCGGCA 61.644 55.000 28.98 7.49 0.00 5.69
2107 2345 1.062525 CTAAGCAAATGACGCCGGC 59.937 57.895 19.07 19.07 0.00 6.13
2108 2346 1.062525 GCTAAGCAAATGACGCCGG 59.937 57.895 0.00 0.00 0.00 6.13
2109 2347 1.062525 GGCTAAGCAAATGACGCCG 59.937 57.895 0.00 0.00 0.00 6.46
2110 2348 0.099436 CTGGCTAAGCAAATGACGCC 59.901 55.000 0.00 0.00 38.01 5.68
2113 2351 3.873910 TCTACCTGGCTAAGCAAATGAC 58.126 45.455 0.00 0.00 0.00 3.06
2140 2378 0.609131 GCAGAAGCTTGGGTGCCTTA 60.609 55.000 2.10 0.00 37.91 2.69
2207 2452 7.609532 AGTTGATATTAGGGCTATTCATGCTTC 59.390 37.037 0.00 0.00 0.00 3.86
2208 2453 7.465116 AGTTGATATTAGGGCTATTCATGCTT 58.535 34.615 0.00 0.00 0.00 3.91
2219 2464 3.876309 TGGGGAAGTTGATATTAGGGC 57.124 47.619 0.00 0.00 0.00 5.19
2429 2692 4.261801 CGGGATGGAACTTTTATCAGTGT 58.738 43.478 0.00 0.00 0.00 3.55
2433 2700 2.650322 GCCGGGATGGAACTTTTATCA 58.350 47.619 2.18 0.00 42.00 2.15
2434 2701 1.954382 GGCCGGGATGGAACTTTTATC 59.046 52.381 2.18 0.00 42.00 1.75
2435 2702 1.569072 AGGCCGGGATGGAACTTTTAT 59.431 47.619 2.18 0.00 42.00 1.40
2436 2703 0.996583 AGGCCGGGATGGAACTTTTA 59.003 50.000 2.18 0.00 42.00 1.52
2452 2719 1.523758 ATGGAGTGAACAAACGAGGC 58.476 50.000 0.00 0.00 0.00 4.70
2481 2763 1.226211 GCGCACAGTGATGACATGC 60.226 57.895 4.15 2.13 34.59 4.06
2485 2767 1.394917 CCTAAAGCGCACAGTGATGAC 59.605 52.381 11.47 0.00 0.00 3.06
2488 2770 2.698855 ATCCTAAAGCGCACAGTGAT 57.301 45.000 11.47 2.76 0.00 3.06
2491 2773 2.622436 GAGAATCCTAAAGCGCACAGT 58.378 47.619 11.47 0.00 0.00 3.55
2492 2774 1.590238 CGAGAATCCTAAAGCGCACAG 59.410 52.381 11.47 2.65 0.00 3.66
2503 2785 1.115467 CACTGTAGGGCGAGAATCCT 58.885 55.000 0.00 0.00 37.18 3.24
2512 2794 2.437359 CCTGCTGCACTGTAGGGC 60.437 66.667 0.00 0.00 36.39 5.19
2525 2808 0.457443 GCTTGGATGGCTAAACCTGC 59.543 55.000 0.00 0.00 40.22 4.85
2540 2823 0.530431 GGGGTGCTTGTTGTTGCTTG 60.530 55.000 0.00 0.00 0.00 4.01
2543 2826 1.965754 TTGGGGGTGCTTGTTGTTGC 61.966 55.000 0.00 0.00 0.00 4.17
2553 2836 1.362355 CACGTCTTTTTGGGGGTGC 59.638 57.895 0.00 0.00 0.00 5.01
2576 2859 8.902540 TGTACAAATATAGCACCTAAGGATTG 57.097 34.615 0.00 0.00 0.00 2.67
2644 9149 8.682710 AGATAAAGCGCAAAAGGTTATTATTCA 58.317 29.630 11.47 0.00 0.00 2.57
2702 11873 7.633193 TTGTAGAAACCAACACAACTGTTAT 57.367 32.000 0.00 0.00 38.66 1.89
2785 12604 6.815089 TCTTGAGTGCAAAACCAATAACAAT 58.185 32.000 0.00 0.00 32.73 2.71
2792 12611 4.644234 TCTGAATCTTGAGTGCAAAACCAA 59.356 37.500 0.00 0.00 32.73 3.67
2801 12620 3.124297 GTCGCCTTTCTGAATCTTGAGTG 59.876 47.826 0.00 0.00 0.00 3.51
2804 12623 3.067106 GTGTCGCCTTTCTGAATCTTGA 58.933 45.455 0.00 0.00 0.00 3.02
2809 12628 1.072331 ACTGGTGTCGCCTTTCTGAAT 59.928 47.619 3.62 0.00 38.35 2.57
2818 12637 4.054780 TCATATTTCTACTGGTGTCGCC 57.945 45.455 0.00 0.00 37.90 5.54
2825 12644 9.177608 TCATTTTGGACTTCATATTTCTACTGG 57.822 33.333 0.00 0.00 0.00 4.00
2837 12656 5.009911 CAGGACATGTTCATTTTGGACTTCA 59.990 40.000 6.96 0.00 0.00 3.02
2843 12662 5.710513 TTCTCAGGACATGTTCATTTTGG 57.289 39.130 6.96 0.00 0.00 3.28
2850 12669 8.738645 ACCTATTTTATTCTCAGGACATGTTC 57.261 34.615 0.00 0.00 0.00 3.18
2871 12690 9.019656 ACATTGCTATTCACAAAATGTTACCTA 57.980 29.630 0.00 0.00 38.05 3.08
2873 12692 8.434661 CAACATTGCTATTCACAAAATGTTACC 58.565 33.333 10.68 0.00 45.09 2.85
2874 12693 9.190858 TCAACATTGCTATTCACAAAATGTTAC 57.809 29.630 10.68 0.00 45.09 2.50
2875 12694 9.926158 ATCAACATTGCTATTCACAAAATGTTA 57.074 25.926 10.68 2.98 45.09 2.41
2876 12695 8.836268 ATCAACATTGCTATTCACAAAATGTT 57.164 26.923 6.31 6.31 46.81 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.