Multiple sequence alignment - TraesCS6B01G047300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G047300 chr6B 100.000 5312 0 0 1 5312 27945904 27940593 0.000000e+00 9810.0
1 TraesCS6B01G047300 chr6B 91.151 1763 104 13 1202 2956 28002837 28004555 0.000000e+00 2344.0
2 TraesCS6B01G047300 chr6B 92.245 1341 69 12 3508 4836 28005344 28006661 0.000000e+00 1868.0
3 TraesCS6B01G047300 chr6B 83.796 1080 113 26 3805 4844 59301537 59300480 0.000000e+00 968.0
4 TraesCS6B01G047300 chr6B 84.812 823 91 13 3805 4609 28724981 28724175 0.000000e+00 797.0
5 TraesCS6B01G047300 chr6B 87.270 597 61 6 1812 2408 27996698 27997279 0.000000e+00 667.0
6 TraesCS6B01G047300 chr6B 86.905 504 26 11 2954 3443 28004885 28005362 3.640000e-146 529.0
7 TraesCS6B01G047300 chr6B 84.698 562 40 15 423 941 28000865 28001423 2.190000e-143 520.0
8 TraesCS6B01G047300 chr6B 85.122 531 50 12 3805 4319 27998317 27998834 2.840000e-142 516.0
9 TraesCS6B01G047300 chr6B 84.986 353 8 16 784 1099 28002321 28002665 3.090000e-82 316.0
10 TraesCS6B01G047300 chr6B 84.242 330 33 8 1202 1517 27995846 27996170 2.400000e-78 303.0
11 TraesCS6B01G047300 chr6B 91.176 170 14 1 181 349 144272756 144272925 4.140000e-56 230.0
12 TraesCS6B01G047300 chr6B 82.456 285 25 15 4849 5125 28010332 28010599 5.350000e-55 226.0
13 TraesCS6B01G047300 chr6B 98.276 116 2 0 1090 1205 28002693 28002808 2.510000e-48 204.0
14 TraesCS6B01G047300 chr6B 86.777 121 15 1 4722 4841 28511170 28511290 3.340000e-27 134.0
15 TraesCS6B01G047300 chr6B 85.484 124 17 1 4722 4844 28724028 28723905 1.550000e-25 128.0
16 TraesCS6B01G047300 chr6B 94.872 78 1 2 3444 3521 160667198 160667272 9.350000e-23 119.0
17 TraesCS6B01G047300 chr6A 91.974 1520 95 13 3508 5015 16457996 16456492 0.000000e+00 2106.0
18 TraesCS6B01G047300 chr6A 91.599 1476 92 9 1202 2671 16460393 16458944 0.000000e+00 2010.0
19 TraesCS6B01G047300 chr6A 85.885 503 21 17 2962 3441 16458455 16457980 1.720000e-134 490.0
20 TraesCS6B01G047300 chr6A 92.283 311 23 1 4096 4406 16467123 16466814 1.760000e-119 440.0
21 TraesCS6B01G047300 chr6A 82.332 283 32 16 830 1099 16460840 16460563 4.140000e-56 230.0
22 TraesCS6B01G047300 chr6A 94.262 122 6 1 2706 2827 16458940 16458820 9.080000e-43 185.0
23 TraesCS6B01G047300 chr6D 89.681 1628 112 27 3544 5159 16191571 16189988 0.000000e+00 2025.0
24 TraesCS6B01G047300 chr6D 92.446 1390 82 9 1202 2582 16196358 16194983 0.000000e+00 1964.0
25 TraesCS6B01G047300 chr6D 85.832 847 64 16 2617 3441 16192413 16191601 0.000000e+00 848.0
26 TraesCS6B01G047300 chr6D 84.879 787 92 15 3802 4571 16380584 16381360 0.000000e+00 769.0
27 TraesCS6B01G047300 chr6D 93.891 311 18 1 4096 4406 16232612 16232303 8.060000e-128 468.0
28 TraesCS6B01G047300 chr6D 83.099 284 35 10 828 1099 16196824 16196542 4.110000e-61 246.0
29 TraesCS6B01G047300 chr6D 83.273 275 35 7 4581 4844 16384011 16384285 5.320000e-60 243.0
30 TraesCS6B01G047300 chr6D 85.345 116 13 2 1090 1205 16196514 16196403 3.360000e-22 117.0
31 TraesCS6B01G047300 chr2B 90.698 1462 85 15 1202 2648 46601790 46600365 0.000000e+00 1899.0
32 TraesCS6B01G047300 chr2B 92.299 870 44 4 3508 4376 46596313 46595466 0.000000e+00 1214.0
33 TraesCS6B01G047300 chr2B 87.592 814 78 18 4379 5181 46595368 46594567 0.000000e+00 922.0
34 TraesCS6B01G047300 chr2B 89.197 685 52 12 2772 3443 46596970 46596295 0.000000e+00 835.0
35 TraesCS6B01G047300 chr2B 83.644 752 45 24 423 1099 46602714 46601966 2.090000e-178 636.0
36 TraesCS6B01G047300 chr2B 90.341 176 15 2 182 355 184124220 184124045 4.140000e-56 230.0
37 TraesCS6B01G047300 chr2B 93.966 116 7 0 1090 1205 46601938 46601823 5.470000e-40 176.0
38 TraesCS6B01G047300 chr1D 85.286 1366 169 19 1202 2558 313215904 313214562 0.000000e+00 1380.0
39 TraesCS6B01G047300 chr1B 84.868 1368 165 29 1202 2558 423592838 423591502 0.000000e+00 1341.0
40 TraesCS6B01G047300 chr1B 90.751 173 15 1 182 353 666906872 666907044 4.140000e-56 230.0
41 TraesCS6B01G047300 chr1B 90.805 87 4 2 3444 3530 381609850 381609768 4.350000e-21 113.0
42 TraesCS6B01G047300 chr1B 83.824 68 9 2 5246 5312 457347606 457347672 4.440000e-06 63.9
43 TraesCS6B01G047300 chr1A 84.430 1368 177 25 1202 2558 392786369 392785027 0.000000e+00 1314.0
44 TraesCS6B01G047300 chr1A 96.104 77 2 1 3444 3520 550884908 550884833 2.010000e-24 124.0
45 TraesCS6B01G047300 chr3B 87.940 199 22 2 181 378 648068881 648068684 3.200000e-57 233.0
46 TraesCS6B01G047300 chr3B 90.341 176 17 0 182 357 689002691 689002866 1.150000e-56 231.0
47 TraesCS6B01G047300 chr3B 90.751 173 15 1 181 352 70584009 70583837 4.140000e-56 230.0
48 TraesCS6B01G047300 chr4A 90.341 176 16 1 170 345 567682106 567681932 4.140000e-56 230.0
49 TraesCS6B01G047300 chr4A 89.831 177 16 2 182 358 89423254 89423080 5.350000e-55 226.0
50 TraesCS6B01G047300 chr4A 98.611 72 1 0 3444 3515 114586398 114586469 1.550000e-25 128.0
51 TraesCS6B01G047300 chr4A 95.000 80 2 2 3444 3521 420020440 420020361 2.010000e-24 124.0
52 TraesCS6B01G047300 chr4B 88.830 188 18 3 159 345 106047828 106047643 1.490000e-55 228.0
53 TraesCS6B01G047300 chr7A 98.592 71 1 0 3444 3514 459178926 459178996 5.580000e-25 126.0
54 TraesCS6B01G047300 chrUn 98.592 71 0 1 3444 3514 348740577 348740508 2.010000e-24 124.0
55 TraesCS6B01G047300 chr5B 87.619 105 7 6 3444 3546 297034398 297034298 3.360000e-22 117.0
56 TraesCS6B01G047300 chr7B 89.011 91 9 1 3444 3534 462530520 462530431 1.560000e-20 111.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G047300 chr6B 27940593 27945904 5311 True 9810.0 9810 100.0000 1 5312 1 chr6B.!!$R1 5311
1 TraesCS6B01G047300 chr6B 59300480 59301537 1057 True 968.0 968 83.7960 3805 4844 1 chr6B.!!$R2 1039
2 TraesCS6B01G047300 chr6B 27995846 28010599 14753 False 749.3 2344 87.7351 423 5125 10 chr6B.!!$F4 4702
3 TraesCS6B01G047300 chr6B 28723905 28724981 1076 True 462.5 797 85.1480 3805 4844 2 chr6B.!!$R3 1039
4 TraesCS6B01G047300 chr6A 16456492 16460840 4348 True 1004.2 2106 89.2104 830 5015 5 chr6A.!!$R2 4185
5 TraesCS6B01G047300 chr6D 16189988 16196824 6836 True 1040.0 2025 87.2806 828 5159 5 chr6D.!!$R2 4331
6 TraesCS6B01G047300 chr6D 16380584 16384285 3701 False 506.0 769 84.0760 3802 4844 2 chr6D.!!$F1 1042
7 TraesCS6B01G047300 chr2B 46594567 46602714 8147 True 947.0 1899 89.5660 423 5181 6 chr2B.!!$R2 4758
8 TraesCS6B01G047300 chr1D 313214562 313215904 1342 True 1380.0 1380 85.2860 1202 2558 1 chr1D.!!$R1 1356
9 TraesCS6B01G047300 chr1B 423591502 423592838 1336 True 1341.0 1341 84.8680 1202 2558 1 chr1B.!!$R2 1356
10 TraesCS6B01G047300 chr1A 392785027 392786369 1342 True 1314.0 1314 84.4300 1202 2558 1 chr1A.!!$R1 1356

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
174 175 0.034186 AGGAAATCCTCGGCATTGCA 60.034 50.0 11.39 0.0 44.77 4.08 F
932 6621 0.108186 TGTGCAGCTAGGTGAATCCG 60.108 55.0 25.66 0.0 41.99 4.18 F
1996 7877 0.179045 GCCGCATCTATGAGTGGGTT 60.179 55.0 0.00 0.0 0.00 4.11 F
2249 8130 0.324943 AAATGGAGGTGGGTCTGACG 59.675 55.0 1.07 0.0 0.00 4.35 F
3187 15300 1.037493 TACGGATGGCGCTCAGTAAT 58.963 50.0 7.64 0.0 0.00 1.89 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1652 7529 1.067295 TGGCAGGACAGGAAACAGAT 58.933 50.0 0.00 0.00 0.00 2.90 R
2203 8084 0.253044 CCTCGCAAATCTCCTTGGGA 59.747 55.0 3.51 3.51 43.58 4.37 R
3437 15575 0.323629 GGGTCCGACCACTTCATGAA 59.676 55.0 19.43 8.12 41.02 2.57 R
3439 15577 0.324943 AAGGGTCCGACCACTTCATG 59.675 55.0 19.43 0.00 41.02 3.07 R
5183 23898 0.542938 AAAAAGAGCAGGGGCCCTTC 60.543 55.0 26.34 20.42 37.05 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 2.377193 TGGTTTATGTGGCTACCAGGTT 59.623 45.455 0.00 0.00 35.82 3.50
23 24 2.752903 GGTTTATGTGGCTACCAGGTTG 59.247 50.000 0.00 0.00 32.34 3.77
24 25 3.560453 GGTTTATGTGGCTACCAGGTTGA 60.560 47.826 5.05 0.00 32.34 3.18
25 26 4.270008 GTTTATGTGGCTACCAGGTTGAT 58.730 43.478 5.05 0.00 32.34 2.57
26 27 4.584638 TTATGTGGCTACCAGGTTGATT 57.415 40.909 5.05 0.00 32.34 2.57
28 29 3.237268 TGTGGCTACCAGGTTGATTTT 57.763 42.857 5.05 0.00 32.34 1.82
29 30 3.571590 TGTGGCTACCAGGTTGATTTTT 58.428 40.909 5.05 0.00 32.34 1.94
49 50 3.810310 TTGTTCAACCATGGAAACCAC 57.190 42.857 21.47 8.70 35.80 4.16
50 51 3.025322 TGTTCAACCATGGAAACCACT 57.975 42.857 21.47 0.00 35.80 4.00
53 54 4.141367 TGTTCAACCATGGAAACCACTCTA 60.141 41.667 21.47 0.38 35.80 2.43
54 55 4.715534 TCAACCATGGAAACCACTCTAA 57.284 40.909 21.47 0.00 35.80 2.10
55 56 5.255397 TCAACCATGGAAACCACTCTAAT 57.745 39.130 21.47 0.00 35.80 1.73
56 57 5.640147 TCAACCATGGAAACCACTCTAATT 58.360 37.500 21.47 0.00 35.80 1.40
57 58 5.476599 TCAACCATGGAAACCACTCTAATTG 59.523 40.000 21.47 7.64 35.80 2.32
59 60 5.640147 ACCATGGAAACCACTCTAATTGAA 58.360 37.500 21.47 0.00 35.80 2.69
61 62 5.105756 CCATGGAAACCACTCTAATTGAACC 60.106 44.000 5.56 0.00 35.80 3.62
63 64 3.439129 GGAAACCACTCTAATTGAACCGG 59.561 47.826 0.00 0.00 0.00 5.28
65 66 3.782656 ACCACTCTAATTGAACCGGTT 57.217 42.857 22.50 22.50 0.00 4.44
66 67 4.094830 ACCACTCTAATTGAACCGGTTT 57.905 40.909 23.22 8.00 0.00 3.27
68 69 4.999311 ACCACTCTAATTGAACCGGTTTAC 59.001 41.667 23.22 10.40 0.00 2.01
69 70 4.998672 CCACTCTAATTGAACCGGTTTACA 59.001 41.667 23.22 13.26 0.00 2.41
71 72 6.819649 CCACTCTAATTGAACCGGTTTACATA 59.180 38.462 23.22 11.51 0.00 2.29
74 75 7.763071 ACTCTAATTGAACCGGTTTACATACTC 59.237 37.037 23.22 6.48 0.00 2.59
75 76 7.844009 TCTAATTGAACCGGTTTACATACTCT 58.156 34.615 23.22 0.00 0.00 3.24
77 78 7.754851 AATTGAACCGGTTTACATACTCTTT 57.245 32.000 23.22 1.85 0.00 2.52
78 79 7.754851 ATTGAACCGGTTTACATACTCTTTT 57.245 32.000 23.22 0.00 0.00 2.27
79 80 6.548441 TGAACCGGTTTACATACTCTTTTG 57.452 37.500 23.22 0.00 0.00 2.44
80 81 6.289834 TGAACCGGTTTACATACTCTTTTGA 58.710 36.000 23.22 0.00 0.00 2.69
81 82 6.203338 TGAACCGGTTTACATACTCTTTTGAC 59.797 38.462 23.22 2.40 0.00 3.18
82 83 5.613329 ACCGGTTTACATACTCTTTTGACA 58.387 37.500 0.00 0.00 0.00 3.58
83 84 6.056884 ACCGGTTTACATACTCTTTTGACAA 58.943 36.000 0.00 0.00 0.00 3.18
84 85 6.543100 ACCGGTTTACATACTCTTTTGACAAA 59.457 34.615 0.00 0.00 0.00 2.83
97 98 2.842208 TGACAAAAGAACAGTTGCCG 57.158 45.000 0.00 0.00 0.00 5.69
98 99 2.360844 TGACAAAAGAACAGTTGCCGA 58.639 42.857 0.00 0.00 0.00 5.54
99 100 2.750166 TGACAAAAGAACAGTTGCCGAA 59.250 40.909 0.00 0.00 0.00 4.30
100 101 3.191581 TGACAAAAGAACAGTTGCCGAAA 59.808 39.130 0.00 0.00 0.00 3.46
101 102 4.170256 GACAAAAGAACAGTTGCCGAAAA 58.830 39.130 0.00 0.00 0.00 2.29
102 103 4.561105 ACAAAAGAACAGTTGCCGAAAAA 58.439 34.783 0.00 0.00 0.00 1.94
127 128 4.506886 ACTTTAGAGATATCCTTCGGCG 57.493 45.455 0.00 0.00 0.00 6.46
128 129 4.142790 ACTTTAGAGATATCCTTCGGCGA 58.857 43.478 4.99 4.99 0.00 5.54
129 130 4.023021 ACTTTAGAGATATCCTTCGGCGAC 60.023 45.833 10.16 0.00 0.00 5.19
141 142 2.796651 GGCGACGTGTCCTATCGT 59.203 61.111 0.00 0.00 43.00 3.73
142 143 2.016961 GGCGACGTGTCCTATCGTA 58.983 57.895 0.00 0.00 40.39 3.43
143 144 0.590195 GGCGACGTGTCCTATCGTAT 59.410 55.000 0.00 0.00 40.39 3.06
148 149 0.109873 CGTGTCCTATCGTATCGCCC 60.110 60.000 0.00 0.00 0.00 6.13
149 150 1.245732 GTGTCCTATCGTATCGCCCT 58.754 55.000 0.00 0.00 0.00 5.19
151 152 0.447011 GTCCTATCGTATCGCCCTCG 59.553 60.000 0.00 0.00 0.00 4.63
168 169 1.001158 CTCGAGTAGGAAATCCTCGGC 60.001 57.143 4.96 0.00 44.77 5.54
169 170 0.744874 CGAGTAGGAAATCCTCGGCA 59.255 55.000 4.96 0.00 44.77 5.69
170 171 1.341531 CGAGTAGGAAATCCTCGGCAT 59.658 52.381 4.96 0.00 44.77 4.40
171 172 2.224066 CGAGTAGGAAATCCTCGGCATT 60.224 50.000 4.96 0.00 44.77 3.56
174 175 0.034186 AGGAAATCCTCGGCATTGCA 60.034 50.000 11.39 0.00 44.77 4.08
176 177 1.098050 GAAATCCTCGGCATTGCACT 58.902 50.000 11.39 0.00 0.00 4.40
177 178 1.474077 GAAATCCTCGGCATTGCACTT 59.526 47.619 11.39 0.00 0.00 3.16
178 179 1.098050 AATCCTCGGCATTGCACTTC 58.902 50.000 11.39 0.00 0.00 3.01
179 180 0.749454 ATCCTCGGCATTGCACTTCC 60.749 55.000 11.39 0.00 0.00 3.46
180 181 1.675310 CCTCGGCATTGCACTTCCA 60.675 57.895 11.39 0.00 0.00 3.53
181 182 1.243342 CCTCGGCATTGCACTTCCAA 61.243 55.000 11.39 0.00 0.00 3.53
182 183 0.169672 CTCGGCATTGCACTTCCAAG 59.830 55.000 11.39 0.00 0.00 3.61
183 184 0.250684 TCGGCATTGCACTTCCAAGA 60.251 50.000 11.39 0.00 0.00 3.02
185 186 0.529378 GGCATTGCACTTCCAAGAGG 59.471 55.000 11.39 0.00 0.00 3.69
186 187 0.529378 GCATTGCACTTCCAAGAGGG 59.471 55.000 3.15 0.00 34.83 4.30
187 188 0.529378 CATTGCACTTCCAAGAGGGC 59.471 55.000 0.00 0.00 46.33 5.19
189 190 3.993535 GCACTTCCAAGAGGGCAG 58.006 61.111 0.00 0.00 45.45 4.85
190 191 1.676967 GCACTTCCAAGAGGGCAGG 60.677 63.158 0.00 0.00 45.45 4.85
191 192 1.676967 CACTTCCAAGAGGGCAGGC 60.677 63.158 0.00 0.00 36.21 4.85
192 193 2.044551 CTTCCAAGAGGGCAGGCC 60.045 66.667 4.33 4.33 36.21 5.19
193 194 2.532715 TTCCAAGAGGGCAGGCCT 60.533 61.111 17.36 17.36 36.21 5.19
194 195 2.833604 CTTCCAAGAGGGCAGGCCTG 62.834 65.000 29.34 29.34 36.21 4.85
209 210 2.281070 CTGGCGCAGTGGTGAAGT 60.281 61.111 10.83 0.00 0.00 3.01
210 211 2.280797 TGGCGCAGTGGTGAAGTC 60.281 61.111 10.83 0.00 0.00 3.01
211 212 3.050275 GGCGCAGTGGTGAAGTCC 61.050 66.667 10.83 0.00 0.00 3.85
212 213 2.031163 GCGCAGTGGTGAAGTCCT 59.969 61.111 0.30 0.00 0.00 3.85
214 215 1.374758 CGCAGTGGTGAAGTCCTCC 60.375 63.158 0.00 0.00 0.00 4.30
216 217 1.679898 CAGTGGTGAAGTCCTCCCC 59.320 63.158 0.00 0.00 0.00 4.81
217 218 1.127567 CAGTGGTGAAGTCCTCCCCA 61.128 60.000 0.00 0.00 0.00 4.96
218 219 1.128188 AGTGGTGAAGTCCTCCCCAC 61.128 60.000 0.00 0.00 44.69 4.61
219 220 1.128188 GTGGTGAAGTCCTCCCCACT 61.128 60.000 0.00 0.00 41.83 4.00
220 221 0.401395 TGGTGAAGTCCTCCCCACTT 60.401 55.000 0.00 0.00 36.77 3.16
222 223 0.765510 GTGAAGTCCTCCCCACTTGT 59.234 55.000 0.00 0.00 34.10 3.16
223 224 0.764890 TGAAGTCCTCCCCACTTGTG 59.235 55.000 0.00 0.00 34.10 3.33
224 225 0.606673 GAAGTCCTCCCCACTTGTGC 60.607 60.000 0.00 0.00 34.10 4.57
225 226 2.034221 GTCCTCCCCACTTGTGCC 59.966 66.667 0.00 0.00 0.00 5.01
226 227 2.121963 TCCTCCCCACTTGTGCCT 60.122 61.111 0.00 0.00 0.00 4.75
228 229 0.474854 TCCTCCCCACTTGTGCCTAA 60.475 55.000 0.00 0.00 0.00 2.69
229 230 0.404040 CCTCCCCACTTGTGCCTAAA 59.596 55.000 0.00 0.00 0.00 1.85
230 231 1.614317 CCTCCCCACTTGTGCCTAAAG 60.614 57.143 0.00 0.00 0.00 1.85
231 232 0.404040 TCCCCACTTGTGCCTAAAGG 59.596 55.000 0.00 0.00 38.53 3.11
235 236 1.073923 CCACTTGTGCCTAAAGGTCCT 59.926 52.381 0.00 0.00 37.57 3.85
236 237 2.154462 CACTTGTGCCTAAAGGTCCTG 58.846 52.381 0.00 0.00 37.57 3.86
237 238 2.054799 ACTTGTGCCTAAAGGTCCTGA 58.945 47.619 0.00 0.00 37.57 3.86
238 239 2.039084 ACTTGTGCCTAAAGGTCCTGAG 59.961 50.000 0.00 0.00 37.57 3.35
239 240 1.729586 TGTGCCTAAAGGTCCTGAGT 58.270 50.000 0.00 0.00 37.57 3.41
241 242 2.441750 TGTGCCTAAAGGTCCTGAGTTT 59.558 45.455 0.00 0.00 37.57 2.66
244 245 3.137544 TGCCTAAAGGTCCTGAGTTTGAA 59.862 43.478 0.00 0.00 37.57 2.69
245 246 3.502595 GCCTAAAGGTCCTGAGTTTGAAC 59.497 47.826 0.00 0.00 37.57 3.18
246 247 4.072839 CCTAAAGGTCCTGAGTTTGAACC 58.927 47.826 0.00 0.00 0.00 3.62
247 248 3.662759 AAAGGTCCTGAGTTTGAACCA 57.337 42.857 0.00 0.00 0.00 3.67
248 249 2.938956 AGGTCCTGAGTTTGAACCAG 57.061 50.000 0.00 0.00 0.00 4.00
249 250 1.202818 AGGTCCTGAGTTTGAACCAGC 60.203 52.381 0.00 0.00 0.00 4.85
251 252 1.140312 TCCTGAGTTTGAACCAGCCT 58.860 50.000 6.76 0.00 0.00 4.58
252 253 1.072331 TCCTGAGTTTGAACCAGCCTC 59.928 52.381 6.76 0.00 0.00 4.70
253 254 1.202806 CCTGAGTTTGAACCAGCCTCA 60.203 52.381 6.76 0.00 0.00 3.86
255 256 3.307691 CCTGAGTTTGAACCAGCCTCATA 60.308 47.826 0.00 0.00 32.20 2.15
256 257 3.937706 CTGAGTTTGAACCAGCCTCATAG 59.062 47.826 0.00 0.00 32.20 2.23
258 259 2.040278 AGTTTGAACCAGCCTCATAGCA 59.960 45.455 0.00 0.00 34.23 3.49
259 260 3.019564 GTTTGAACCAGCCTCATAGCAT 58.980 45.455 0.00 0.00 34.23 3.79
260 261 3.370840 TTGAACCAGCCTCATAGCATT 57.629 42.857 0.00 0.00 34.23 3.56
261 262 2.646930 TGAACCAGCCTCATAGCATTG 58.353 47.619 0.00 0.00 34.23 2.82
263 264 3.199727 TGAACCAGCCTCATAGCATTGTA 59.800 43.478 0.00 0.00 34.23 2.41
264 265 3.199880 ACCAGCCTCATAGCATTGTAC 57.800 47.619 0.00 0.00 34.23 2.90
267 268 4.202441 CCAGCCTCATAGCATTGTACTTT 58.798 43.478 0.00 0.00 34.23 2.66
268 269 4.036027 CCAGCCTCATAGCATTGTACTTTG 59.964 45.833 0.00 0.00 34.23 2.77
269 270 3.629398 AGCCTCATAGCATTGTACTTTGC 59.371 43.478 11.27 11.27 39.17 3.68
270 271 3.378112 GCCTCATAGCATTGTACTTTGCA 59.622 43.478 18.56 8.46 41.35 4.08
271 272 4.497006 GCCTCATAGCATTGTACTTTGCAG 60.497 45.833 18.56 9.65 41.35 4.41
272 273 4.036027 CCTCATAGCATTGTACTTTGCAGG 59.964 45.833 18.56 13.49 41.35 4.85
274 275 1.549203 AGCATTGTACTTTGCAGGGG 58.451 50.000 18.56 0.00 41.35 4.79
275 276 1.203050 AGCATTGTACTTTGCAGGGGT 60.203 47.619 18.56 0.00 41.35 4.95
277 278 2.823154 GCATTGTACTTTGCAGGGGTAA 59.177 45.455 13.53 0.00 38.72 2.85
278 279 3.119495 GCATTGTACTTTGCAGGGGTAAG 60.119 47.826 13.53 0.00 38.72 2.34
279 280 4.331968 CATTGTACTTTGCAGGGGTAAGA 58.668 43.478 2.16 0.00 0.00 2.10
280 281 3.412237 TGTACTTTGCAGGGGTAAGAC 57.588 47.619 2.16 0.00 0.00 3.01
281 282 2.976882 TGTACTTTGCAGGGGTAAGACT 59.023 45.455 2.16 0.00 0.00 3.24
282 283 4.161876 TGTACTTTGCAGGGGTAAGACTA 58.838 43.478 2.16 0.00 0.00 2.59
283 284 4.594062 TGTACTTTGCAGGGGTAAGACTAA 59.406 41.667 2.16 0.00 0.00 2.24
285 286 5.256806 ACTTTGCAGGGGTAAGACTAAAT 57.743 39.130 2.16 0.00 0.00 1.40
287 288 5.710567 ACTTTGCAGGGGTAAGACTAAATTC 59.289 40.000 2.16 0.00 0.00 2.17
288 289 4.230745 TGCAGGGGTAAGACTAAATTCC 57.769 45.455 0.00 0.00 0.00 3.01
289 290 3.850173 TGCAGGGGTAAGACTAAATTCCT 59.150 43.478 0.00 0.00 0.00 3.36
291 292 5.670361 TGCAGGGGTAAGACTAAATTCCTAT 59.330 40.000 0.00 0.00 0.00 2.57
294 295 8.383947 GCAGGGGTAAGACTAAATTCCTATAAT 58.616 37.037 0.00 0.00 0.00 1.28
295 296 9.945904 CAGGGGTAAGACTAAATTCCTATAATC 57.054 37.037 0.00 0.00 0.00 1.75
296 297 9.113797 AGGGGTAAGACTAAATTCCTATAATCC 57.886 37.037 0.00 0.00 0.00 3.01
297 298 8.327271 GGGGTAAGACTAAATTCCTATAATCCC 58.673 40.741 0.00 0.00 0.00 3.85
298 299 9.113797 GGGTAAGACTAAATTCCTATAATCCCT 57.886 37.037 0.00 0.00 0.00 4.20
301 302 7.816300 AGACTAAATTCCTATAATCCCTCCC 57.184 40.000 0.00 0.00 0.00 4.30
302 303 6.736179 AGACTAAATTCCTATAATCCCTCCCC 59.264 42.308 0.00 0.00 0.00 4.81
305 306 2.320681 TCCTATAATCCCTCCCCACG 57.679 55.000 0.00 0.00 0.00 4.94
306 307 0.613777 CCTATAATCCCTCCCCACGC 59.386 60.000 0.00 0.00 0.00 5.34
307 308 0.613777 CTATAATCCCTCCCCACGCC 59.386 60.000 0.00 0.00 0.00 5.68
308 309 0.838987 TATAATCCCTCCCCACGCCC 60.839 60.000 0.00 0.00 0.00 6.13
319 320 3.286751 CACGCCCCACCTTGTGTG 61.287 66.667 0.00 0.00 45.01 3.82
328 329 2.348411 CACCTTGTGTGGGAGTTTCT 57.652 50.000 0.00 0.00 41.52 2.52
329 330 3.485463 CACCTTGTGTGGGAGTTTCTA 57.515 47.619 0.00 0.00 41.52 2.10
330 331 4.021102 CACCTTGTGTGGGAGTTTCTAT 57.979 45.455 0.00 0.00 41.52 1.98
332 333 2.749621 CCTTGTGTGGGAGTTTCTATGC 59.250 50.000 0.00 0.00 0.00 3.14
335 336 2.371841 TGTGTGGGAGTTTCTATGCACT 59.628 45.455 0.00 0.00 0.00 4.40
337 338 2.290260 TGTGGGAGTTTCTATGCACTGG 60.290 50.000 0.00 0.00 0.00 4.00
338 339 1.281867 TGGGAGTTTCTATGCACTGGG 59.718 52.381 0.00 0.00 0.00 4.45
339 340 1.282157 GGGAGTTTCTATGCACTGGGT 59.718 52.381 0.00 0.00 0.00 4.51
340 341 2.633488 GGAGTTTCTATGCACTGGGTC 58.367 52.381 0.00 0.00 0.00 4.46
342 343 3.526534 GAGTTTCTATGCACTGGGTCTC 58.473 50.000 0.00 0.00 0.00 3.36
343 344 3.177228 AGTTTCTATGCACTGGGTCTCT 58.823 45.455 0.00 0.00 0.00 3.10
345 346 2.836636 TCTATGCACTGGGTCTCTCT 57.163 50.000 0.00 0.00 0.00 3.10
347 348 3.027412 TCTATGCACTGGGTCTCTCTTC 58.973 50.000 0.00 0.00 0.00 2.87
348 349 1.949799 ATGCACTGGGTCTCTCTTCT 58.050 50.000 0.00 0.00 0.00 2.85
349 350 1.722034 TGCACTGGGTCTCTCTTCTT 58.278 50.000 0.00 0.00 0.00 2.52
350 351 1.620819 TGCACTGGGTCTCTCTTCTTC 59.379 52.381 0.00 0.00 0.00 2.87
351 352 1.620819 GCACTGGGTCTCTCTTCTTCA 59.379 52.381 0.00 0.00 0.00 3.02
352 353 2.235898 GCACTGGGTCTCTCTTCTTCAT 59.764 50.000 0.00 0.00 0.00 2.57
353 354 3.307339 GCACTGGGTCTCTCTTCTTCATT 60.307 47.826 0.00 0.00 0.00 2.57
354 355 4.252073 CACTGGGTCTCTCTTCTTCATTG 58.748 47.826 0.00 0.00 0.00 2.82
355 356 3.269178 CTGGGTCTCTCTTCTTCATTGC 58.731 50.000 0.00 0.00 0.00 3.56
357 358 3.072915 TGGGTCTCTCTTCTTCATTGCAA 59.927 43.478 0.00 0.00 0.00 4.08
358 359 3.688673 GGGTCTCTCTTCTTCATTGCAAG 59.311 47.826 4.94 0.00 0.00 4.01
359 360 3.688673 GGTCTCTCTTCTTCATTGCAAGG 59.311 47.826 4.34 4.34 0.00 3.61
360 361 4.564406 GGTCTCTCTTCTTCATTGCAAGGA 60.564 45.833 10.22 10.22 0.00 3.36
363 364 6.150809 GTCTCTCTTCTTCATTGCAAGGAAAT 59.849 38.462 24.91 0.00 0.00 2.17
365 366 6.917533 TCTCTTCTTCATTGCAAGGAAATTC 58.082 36.000 24.91 0.00 0.00 2.17
366 367 5.702865 TCTTCTTCATTGCAAGGAAATTCG 58.297 37.500 24.91 14.62 0.00 3.34
369 370 6.083098 TCTTCATTGCAAGGAAATTCGAAA 57.917 33.333 24.91 3.06 0.00 3.46
370 371 6.690530 TCTTCATTGCAAGGAAATTCGAAAT 58.309 32.000 24.91 0.00 0.00 2.17
373 374 9.090692 CTTCATTGCAAGGAAATTCGAAATAAT 57.909 29.630 24.91 0.00 0.00 1.28
374 375 9.434420 TTCATTGCAAGGAAATTCGAAATAATT 57.566 25.926 23.11 0.00 0.00 1.40
376 377 9.480538 CATTGCAAGGAAATTCGAAATAATTTG 57.519 29.630 4.81 6.34 38.77 2.32
377 378 7.593875 TGCAAGGAAATTCGAAATAATTTGG 57.406 32.000 0.00 0.00 38.77 3.28
379 380 6.037062 GCAAGGAAATTCGAAATAATTTGGGG 59.963 38.462 0.00 0.00 38.77 4.96
380 381 6.867519 AGGAAATTCGAAATAATTTGGGGT 57.132 33.333 0.00 0.00 38.77 4.95
381 382 6.639563 AGGAAATTCGAAATAATTTGGGGTG 58.360 36.000 0.00 0.00 38.77 4.61
382 383 5.293324 GGAAATTCGAAATAATTTGGGGTGC 59.707 40.000 0.00 0.00 38.77 5.01
384 385 4.448537 TTCGAAATAATTTGGGGTGCTG 57.551 40.909 0.00 0.00 0.00 4.41
385 386 3.691575 TCGAAATAATTTGGGGTGCTGA 58.308 40.909 0.00 0.00 0.00 4.26
387 388 3.734902 CGAAATAATTTGGGGTGCTGAGC 60.735 47.826 0.00 0.00 0.00 4.26
389 390 2.530460 TAATTTGGGGTGCTGAGCAT 57.470 45.000 11.58 0.00 41.91 3.79
390 391 0.899720 AATTTGGGGTGCTGAGCATG 59.100 50.000 11.58 0.00 41.91 4.06
391 392 1.610554 ATTTGGGGTGCTGAGCATGC 61.611 55.000 11.58 10.51 41.91 4.06
392 393 2.998301 TTTGGGGTGCTGAGCATGCA 62.998 55.000 21.98 0.00 41.91 3.96
393 394 2.677524 GGGGTGCTGAGCATGCAA 60.678 61.111 21.98 6.70 41.91 4.08
394 395 2.277591 GGGGTGCTGAGCATGCAAA 61.278 57.895 21.98 6.29 41.91 3.68
395 396 1.080298 GGGTGCTGAGCATGCAAAC 60.080 57.895 21.98 11.31 41.91 2.93
397 398 1.443194 GTGCTGAGCATGCAAACCG 60.443 57.895 21.98 8.36 41.91 4.44
398 399 2.505557 GCTGAGCATGCAAACCGC 60.506 61.111 21.98 14.23 42.89 5.68
399 400 2.180017 CTGAGCATGCAAACCGCC 59.820 61.111 21.98 0.25 41.33 6.13
403 404 4.722855 GCATGCAAACCGCCGCTT 62.723 61.111 14.21 0.00 41.33 4.68
404 405 2.806198 CATGCAAACCGCCGCTTG 60.806 61.111 0.00 0.00 41.33 4.01
407 408 4.999939 GCAAACCGCCGCTTGGTG 63.000 66.667 0.36 0.00 40.35 4.17
413 414 2.358247 CGCCGCTTGGTGGTAACT 60.358 61.111 0.00 0.00 39.71 2.24
414 415 2.388232 CGCCGCTTGGTGGTAACTC 61.388 63.158 0.00 0.00 39.71 3.01
421 422 3.795905 GGTGGTAACTCCCGGACA 58.204 61.111 0.73 0.00 44.68 4.02
426 427 2.093128 GTGGTAACTCCCGGACATGATT 60.093 50.000 0.73 0.00 34.77 2.57
454 5052 1.796617 GCAAGCGAATGATGCAAGGTC 60.797 52.381 0.00 0.00 39.81 3.85
455 5053 1.098050 AAGCGAATGATGCAAGGTCC 58.902 50.000 0.00 0.00 33.85 4.46
456 5054 0.254178 AGCGAATGATGCAAGGTCCT 59.746 50.000 0.00 0.00 33.85 3.85
457 5055 0.659957 GCGAATGATGCAAGGTCCTC 59.340 55.000 0.00 0.00 0.00 3.71
459 5057 1.685148 GAATGATGCAAGGTCCTCCC 58.315 55.000 0.00 0.00 0.00 4.30
462 5060 1.144936 GATGCAAGGTCCTCCCTCG 59.855 63.158 0.00 0.00 45.47 4.63
463 5061 2.932130 GATGCAAGGTCCTCCCTCGC 62.932 65.000 0.00 0.00 45.47 5.03
464 5062 3.394836 GCAAGGTCCTCCCTCGCT 61.395 66.667 0.00 0.00 45.47 4.93
465 5063 2.960688 GCAAGGTCCTCCCTCGCTT 61.961 63.158 0.00 0.00 45.47 4.68
478 5087 0.379669 CTCGCTTCCCATGTTGATGC 59.620 55.000 9.16 9.16 0.00 3.91
482 5091 1.019673 CTTCCCATGTTGATGCGGAG 58.980 55.000 0.00 0.00 33.20 4.63
505 5114 1.410737 CCACCGTCACAATACGAGCG 61.411 60.000 0.00 0.00 45.68 5.03
521 5130 1.134075 GCGCATCTGCTCAACACTG 59.866 57.895 0.30 0.00 39.32 3.66
535 5144 1.071987 CACTGCACTGCCCTCTTCA 59.928 57.895 0.00 0.00 0.00 3.02
537 5146 1.374190 CTGCACTGCCCTCTTCAGT 59.626 57.895 0.00 0.00 44.87 3.41
546 5155 2.160721 CCCTCTTCAGTAGTAGGGCA 57.839 55.000 0.00 0.00 42.22 5.36
547 5156 1.757699 CCCTCTTCAGTAGTAGGGCAC 59.242 57.143 0.00 0.00 42.22 5.01
548 5157 2.624557 CCCTCTTCAGTAGTAGGGCACT 60.625 54.545 0.00 0.00 42.22 4.40
680 5293 5.421056 TGTCGGTATGTTATCTCAAGGAAGT 59.579 40.000 0.00 0.00 0.00 3.01
708 5321 5.237815 GGCTGGCTTTTACTGCTAATTTTT 58.762 37.500 0.00 0.00 33.87 1.94
928 6617 1.882912 CAGTTGTGCAGCTAGGTGAA 58.117 50.000 25.66 12.99 0.00 3.18
929 6618 2.430465 CAGTTGTGCAGCTAGGTGAAT 58.570 47.619 25.66 0.55 0.00 2.57
931 6620 1.740025 GTTGTGCAGCTAGGTGAATCC 59.260 52.381 25.66 8.14 0.00 3.01
932 6621 0.108186 TGTGCAGCTAGGTGAATCCG 60.108 55.000 25.66 0.00 41.99 4.18
933 6622 1.153369 TGCAGCTAGGTGAATCCGC 60.153 57.895 25.66 9.33 41.99 5.54
934 6623 1.144936 GCAGCTAGGTGAATCCGCT 59.855 57.895 25.66 0.00 41.99 5.52
935 6624 1.156645 GCAGCTAGGTGAATCCGCTG 61.157 60.000 25.66 8.23 46.35 5.18
936 6625 1.144936 AGCTAGGTGAATCCGCTGC 59.855 57.895 0.00 0.00 41.99 5.25
937 6626 2.240500 GCTAGGTGAATCCGCTGCG 61.241 63.158 16.34 16.34 41.99 5.18
938 6627 2.202878 TAGGTGAATCCGCTGCGC 60.203 61.111 18.00 0.00 41.99 6.09
969 6669 2.280389 CGCTCCCATGGATGACGG 60.280 66.667 15.22 0.00 0.00 4.79
1413 7278 2.407428 CGAGGCCACGCAGAGACTA 61.407 63.158 10.32 0.00 0.00 2.59
1555 7431 1.261619 CAAGAGGTGAAGTGTGAACGC 59.738 52.381 0.00 0.00 0.00 4.84
1616 7493 0.247458 GTTCATCTTTCTGCGCTCGC 60.247 55.000 9.73 7.38 42.35 5.03
1652 7529 2.096980 CCGCTGTACTCGACATTGTCTA 59.903 50.000 14.54 3.13 37.45 2.59
1746 7623 0.396811 AAGCTTCCTTACGTGGCAGT 59.603 50.000 0.00 0.00 0.00 4.40
1747 7624 0.396811 AGCTTCCTTACGTGGCAGTT 59.603 50.000 0.00 0.00 0.00 3.16
1995 7876 1.337384 TGCCGCATCTATGAGTGGGT 61.337 55.000 0.00 0.00 0.00 4.51
1996 7877 0.179045 GCCGCATCTATGAGTGGGTT 60.179 55.000 0.00 0.00 0.00 4.11
2003 7884 4.747931 GCATCTATGAGTGGGTTATGCCTT 60.748 45.833 0.00 0.00 37.43 4.35
2039 7920 1.694696 CTAGTAATCCAGCCAGGGTCC 59.305 57.143 0.00 0.00 38.24 4.46
2040 7921 0.988678 AGTAATCCAGCCAGGGTCCC 60.989 60.000 0.00 0.00 38.24 4.46
2041 7922 2.070039 TAATCCAGCCAGGGTCCCG 61.070 63.158 0.99 0.00 38.24 5.14
2168 8049 7.228706 TCACTCGCTTATGTCATGTAAGATCTA 59.771 37.037 0.00 0.00 32.20 1.98
2235 8116 1.138247 GCGAGGCAGCAAGAAATGG 59.862 57.895 0.00 0.00 37.05 3.16
2249 8130 0.324943 AAATGGAGGTGGGTCTGACG 59.675 55.000 1.07 0.00 0.00 4.35
2278 8159 7.167924 TGCAAATTTAGCACCATCTATGAAA 57.832 32.000 10.11 0.00 37.02 2.69
2396 8280 5.221402 TGTTTGACCATTGCTTTGCATCTAA 60.221 36.000 0.00 0.00 38.76 2.10
2579 8470 3.498397 CCATGGTAGGCATGTCGTATTTC 59.502 47.826 2.57 0.00 0.00 2.17
2701 11139 9.111519 TGTATGGAGTATGGACCATTGTTATAT 57.888 33.333 13.40 4.00 43.30 0.86
2702 11140 9.383519 GTATGGAGTATGGACCATTGTTATATG 57.616 37.037 13.40 0.00 43.30 1.78
2841 14605 5.931146 TGGCCTTGTTTGCAATAAATAACTG 59.069 36.000 3.32 0.00 33.65 3.16
2863 14627 5.573219 TGTTCACATTTCCAGGATCTCAAT 58.427 37.500 0.00 0.00 0.00 2.57
2866 14630 6.070951 TCACATTTCCAGGATCTCAATCTT 57.929 37.500 0.00 0.00 32.12 2.40
2903 14667 9.618890 AATAGAGAGCTTCATTATGCTTGTTAA 57.381 29.630 0.00 0.00 39.91 2.01
2909 14673 8.737168 AGCTTCATTATGCTTGTTAATGACTA 57.263 30.769 5.80 0.00 42.68 2.59
2910 14674 9.177608 AGCTTCATTATGCTTGTTAATGACTAA 57.822 29.630 5.80 0.00 42.68 2.24
2911 14675 9.226345 GCTTCATTATGCTTGTTAATGACTAAC 57.774 33.333 5.80 0.00 42.68 2.34
3131 15236 5.682234 AGGGATCCCATGTTTCAAAAATC 57.318 39.130 32.69 0.00 38.92 2.17
3140 15253 5.239087 CCATGTTTCAAAAATCCAACCAAGG 59.761 40.000 0.00 0.00 0.00 3.61
3177 15290 4.000988 TCTCTTTCTTTTGTACGGATGGC 58.999 43.478 0.00 0.00 0.00 4.40
3187 15300 1.037493 TACGGATGGCGCTCAGTAAT 58.963 50.000 7.64 0.00 0.00 1.89
3335 15457 1.276989 CCCAAAGGCTAGACGTGGTTA 59.723 52.381 17.37 0.00 0.00 2.85
3345 15467 3.832615 AGACGTGGTTAGTCTGGTTTT 57.167 42.857 0.00 0.00 46.12 2.43
3417 15555 8.102047 TGGATAAGAAAAATGTGCATTCCATTT 58.898 29.630 7.70 7.70 42.68 2.32
3449 15587 7.915293 TTTAATACGATGTTCATGAAGTGGT 57.085 32.000 8.80 10.49 0.00 4.16
3450 15588 7.534085 TTAATACGATGTTCATGAAGTGGTC 57.466 36.000 8.80 4.06 0.00 4.02
3451 15589 2.337583 ACGATGTTCATGAAGTGGTCG 58.662 47.619 20.74 20.74 0.00 4.79
3452 15590 1.660607 CGATGTTCATGAAGTGGTCGG 59.339 52.381 8.80 0.00 0.00 4.79
3453 15591 2.673893 CGATGTTCATGAAGTGGTCGGA 60.674 50.000 8.80 0.00 0.00 4.55
3454 15592 2.163818 TGTTCATGAAGTGGTCGGAC 57.836 50.000 8.80 0.00 0.00 4.79
3455 15593 1.270625 TGTTCATGAAGTGGTCGGACC 60.271 52.381 20.36 20.36 39.22 4.46
3456 15594 0.323629 TTCATGAAGTGGTCGGACCC 59.676 55.000 23.81 14.91 37.50 4.46
3457 15595 0.544357 TCATGAAGTGGTCGGACCCT 60.544 55.000 23.81 16.82 37.50 4.34
3458 15596 0.324943 CATGAAGTGGTCGGACCCTT 59.675 55.000 23.81 23.17 37.50 3.95
3459 15597 0.613777 ATGAAGTGGTCGGACCCTTC 59.386 55.000 30.92 30.92 41.67 3.46
3460 15598 1.295746 GAAGTGGTCGGACCCTTCC 59.704 63.158 29.24 19.29 38.50 3.46
3461 15599 2.181445 GAAGTGGTCGGACCCTTCCC 62.181 65.000 29.24 17.13 38.50 3.97
3462 15600 3.714001 GTGGTCGGACCCTTCCCC 61.714 72.222 23.81 0.00 38.99 4.81
3469 15607 4.735599 GACCCTTCCCCGGACCCT 62.736 72.222 0.73 0.00 0.00 4.34
3496 15634 2.203070 GGAGCTACATGCACCGGG 60.203 66.667 6.32 0.00 42.21 5.73
3497 15635 2.897350 GAGCTACATGCACCGGGC 60.897 66.667 6.32 7.25 45.94 6.13
3498 15636 3.391665 GAGCTACATGCACCGGGCT 62.392 63.158 6.32 0.81 45.94 5.19
3499 15637 3.204827 GCTACATGCACCGGGCTG 61.205 66.667 6.32 9.21 45.15 4.85
3500 15638 3.204827 CTACATGCACCGGGCTGC 61.205 66.667 6.32 8.50 45.15 5.25
3501 15639 4.794648 TACATGCACCGGGCTGCC 62.795 66.667 11.05 11.05 45.15 4.85
3507 15645 2.917227 CACCGGGCTGCCCTTTTT 60.917 61.111 33.39 13.23 42.67 1.94
3650 15818 5.543507 ATTCTGCAGACTATTCGAAGGAT 57.456 39.130 18.03 0.00 0.00 3.24
3701 15869 2.223923 TGTTGTTTTTCCTGGGATTGCG 60.224 45.455 0.00 0.00 0.00 4.85
3704 15872 0.316841 TTTTTCCTGGGATTGCGTGC 59.683 50.000 0.00 0.00 0.00 5.34
3764 15932 2.557056 TCTGTACAAAGGACGAGAGGTG 59.443 50.000 0.00 0.00 0.00 4.00
3829 15997 7.969387 TTTATTCGCAGCATATTTGAACTTC 57.031 32.000 0.00 0.00 0.00 3.01
3854 16022 7.230510 TCAAATTTGTACAAATGTAGCACCTCT 59.769 33.333 29.54 10.94 40.57 3.69
3902 16071 5.048434 TGGCGATTGTTGTTGATTTGATGTA 60.048 36.000 0.00 0.00 0.00 2.29
3922 16092 6.104146 TGTATAAACCTGTTGCACTGTAGA 57.896 37.500 0.00 0.00 0.00 2.59
4005 16190 0.463620 TTGGTGCAAGGTGCTTTTCC 59.536 50.000 1.43 0.69 45.31 3.13
4170 16361 4.453819 GCTGGACATGCTGATTATTACCTC 59.546 45.833 0.00 0.00 0.00 3.85
4272 16463 6.488715 ACTTGGCTGGATAGAAGAAAGAATT 58.511 36.000 0.00 0.00 0.00 2.17
4274 16465 6.065976 TGGCTGGATAGAAGAAAGAATTGA 57.934 37.500 0.00 0.00 0.00 2.57
4322 16520 1.203050 ACCTGGCTAAGCAAATGGTGT 60.203 47.619 0.00 0.00 0.00 4.16
4377 16679 0.541296 ATTGCCAGCTTGCCAAGTCT 60.541 50.000 7.41 1.04 0.00 3.24
4649 19659 9.427127 GAGATTTATCAGCTCGATTGTAAAAAC 57.573 33.333 4.35 0.28 35.39 2.43
4660 19670 4.261405 CGATTGTAAAAACTGACCAAGGCA 60.261 41.667 0.00 0.00 0.00 4.75
4712 19722 8.803235 AGTTTTCACCCTTTCTTATTTATGGAC 58.197 33.333 0.00 0.00 0.00 4.02
4823 19840 8.082242 AGGTTATTGATTTGTTTTGTACTGCTC 58.918 33.333 0.00 0.00 0.00 4.26
4844 19861 7.272978 TGCTCGATTTAGCTAGGAAAAACTAT 58.727 34.615 0.00 0.00 43.19 2.12
4846 19863 8.277018 GCTCGATTTAGCTAGGAAAAACTATTC 58.723 37.037 0.00 0.00 39.50 1.75
4962 23640 5.824904 AGCAAAATATCGACTTGCAGATT 57.175 34.783 19.42 3.01 46.26 2.40
4995 23673 0.114954 TCCCAAGGCCATTCTTTGCT 59.885 50.000 5.01 0.00 0.00 3.91
5002 23680 4.931661 AGGCCATTCTTTGCTTGATATG 57.068 40.909 5.01 0.00 0.00 1.78
5003 23681 3.640029 AGGCCATTCTTTGCTTGATATGG 59.360 43.478 5.01 0.00 36.47 2.74
5015 23693 6.788598 TGCTTGATATGGCCATTTTCTTTA 57.211 33.333 26.37 3.59 0.00 1.85
5016 23694 7.364149 TGCTTGATATGGCCATTTTCTTTAT 57.636 32.000 26.37 9.33 0.00 1.40
5017 23695 7.436118 TGCTTGATATGGCCATTTTCTTTATC 58.564 34.615 26.37 18.49 0.00 1.75
5018 23696 7.069702 TGCTTGATATGGCCATTTTCTTTATCA 59.930 33.333 26.37 20.89 0.00 2.15
5019 23697 8.092687 GCTTGATATGGCCATTTTCTTTATCAT 58.907 33.333 26.37 6.80 0.00 2.45
5020 23698 9.991906 CTTGATATGGCCATTTTCTTTATCATT 57.008 29.630 26.37 0.00 0.00 2.57
5021 23699 9.767228 TTGATATGGCCATTTTCTTTATCATTG 57.233 29.630 26.37 0.00 0.00 2.82
5022 23700 9.145442 TGATATGGCCATTTTCTTTATCATTGA 57.855 29.630 26.37 0.00 0.00 2.57
5025 23703 8.671384 ATGGCCATTTTCTTTATCATTGATTG 57.329 30.769 14.09 0.00 0.00 2.67
5026 23704 6.539464 TGGCCATTTTCTTTATCATTGATTGC 59.461 34.615 0.00 0.00 0.00 3.56
5027 23705 6.539464 GGCCATTTTCTTTATCATTGATTGCA 59.461 34.615 4.14 0.00 0.00 4.08
5028 23706 7.066043 GGCCATTTTCTTTATCATTGATTGCAA 59.934 33.333 0.00 0.00 38.60 4.08
5029 23707 8.617809 GCCATTTTCTTTATCATTGATTGCAAT 58.382 29.630 12.83 12.83 45.33 3.56
5073 23751 4.946157 AGCTGGCCATGATATATGCTAAAC 59.054 41.667 5.51 0.00 0.00 2.01
5092 23771 6.801862 GCTAAACTGTTTCTTAACGCATGATT 59.198 34.615 9.38 0.00 37.06 2.57
5093 23772 7.960738 GCTAAACTGTTTCTTAACGCATGATTA 59.039 33.333 9.38 0.00 37.06 1.75
5094 23773 9.988350 CTAAACTGTTTCTTAACGCATGATTAT 57.012 29.630 9.38 0.00 37.06 1.28
5097 23776 9.935682 AACTGTTTCTTAACGCATGATTATATG 57.064 29.630 0.00 0.00 37.06 1.78
5132 23839 3.368248 CCCCATCATTGAATCCACAAGT 58.632 45.455 0.00 0.00 33.22 3.16
5135 23850 6.306199 CCCCATCATTGAATCCACAAGTATA 58.694 40.000 0.00 0.00 33.22 1.47
5138 23853 8.355169 CCCATCATTGAATCCACAAGTATAAAG 58.645 37.037 0.00 0.00 33.22 1.85
5183 23898 4.087892 CACGAGGGGCTCCAGGTG 62.088 72.222 4.79 8.77 34.05 4.00
5184 23899 4.316823 ACGAGGGGCTCCAGGTGA 62.317 66.667 4.79 0.00 34.83 4.02
5185 23900 3.003173 CGAGGGGCTCCAGGTGAA 61.003 66.667 4.79 0.00 34.83 3.18
5186 23901 2.993853 GAGGGGCTCCAGGTGAAG 59.006 66.667 4.79 0.00 34.83 3.02
5187 23902 2.612115 AGGGGCTCCAGGTGAAGG 60.612 66.667 4.79 0.00 34.83 3.46
5188 23903 3.732849 GGGGCTCCAGGTGAAGGG 61.733 72.222 0.00 0.00 0.00 3.95
5189 23904 4.432741 GGGCTCCAGGTGAAGGGC 62.433 72.222 0.00 0.00 0.00 5.19
5190 23905 4.432741 GGCTCCAGGTGAAGGGCC 62.433 72.222 0.00 0.00 36.04 5.80
5191 23906 4.432741 GCTCCAGGTGAAGGGCCC 62.433 72.222 16.46 16.46 0.00 5.80
5192 23907 3.732849 CTCCAGGTGAAGGGCCCC 61.733 72.222 21.43 4.15 0.00 5.80
5193 23908 4.285790 TCCAGGTGAAGGGCCCCT 62.286 66.667 21.43 4.78 33.87 4.79
5194 23909 4.052518 CCAGGTGAAGGGCCCCTG 62.053 72.222 21.43 18.11 44.39 4.45
5195 23910 4.748144 CAGGTGAAGGGCCCCTGC 62.748 72.222 21.43 0.00 39.36 4.85
5197 23912 4.432741 GGTGAAGGGCCCCTGCTC 62.433 72.222 21.43 5.09 38.71 4.26
5224 23939 7.938563 TTTTAAGTGAATGTATTTGGTGCAC 57.061 32.000 8.80 8.80 0.00 4.57
5225 23940 4.519540 AAGTGAATGTATTTGGTGCACC 57.480 40.909 29.67 29.67 0.00 5.01
5226 23941 2.487762 AGTGAATGTATTTGGTGCACCG 59.512 45.455 30.07 0.00 39.43 4.94
5227 23942 2.227865 GTGAATGTATTTGGTGCACCGT 59.772 45.455 30.07 20.40 39.43 4.83
5228 23943 3.437395 GTGAATGTATTTGGTGCACCGTA 59.563 43.478 30.07 20.61 39.43 4.02
5229 23944 4.095782 GTGAATGTATTTGGTGCACCGTAT 59.904 41.667 30.07 25.34 39.43 3.06
5230 23945 4.095632 TGAATGTATTTGGTGCACCGTATG 59.904 41.667 30.07 0.00 39.43 2.39
5240 23955 2.684128 CACCGTATGCCGTATTGCA 58.316 52.632 0.00 0.00 46.94 4.08
5251 23966 5.065704 TGCCGTATTGCATTGTAAAATGT 57.934 34.783 7.46 0.00 36.04 2.71
5252 23967 5.473931 TGCCGTATTGCATTGTAAAATGTT 58.526 33.333 7.46 0.00 36.04 2.71
5253 23968 5.928839 TGCCGTATTGCATTGTAAAATGTTT 59.071 32.000 7.46 0.00 36.04 2.83
5254 23969 6.425114 TGCCGTATTGCATTGTAAAATGTTTT 59.575 30.769 7.46 0.00 36.04 2.43
5255 23970 7.598869 TGCCGTATTGCATTGTAAAATGTTTTA 59.401 29.630 7.46 0.00 36.04 1.52
5256 23971 8.436200 GCCGTATTGCATTGTAAAATGTTTTAA 58.564 29.630 7.46 0.00 34.71 1.52
5291 24006 9.593134 AAAACAATTTAGCACATTAAGACAACA 57.407 25.926 0.00 0.00 0.00 3.33
5292 24007 9.762933 AAACAATTTAGCACATTAAGACAACAT 57.237 25.926 0.00 0.00 0.00 2.71
5293 24008 8.970691 ACAATTTAGCACATTAAGACAACATC 57.029 30.769 0.00 0.00 0.00 3.06
5294 24009 8.575589 ACAATTTAGCACATTAAGACAACATCA 58.424 29.630 0.00 0.00 0.00 3.07
5295 24010 9.409312 CAATTTAGCACATTAAGACAACATCAA 57.591 29.630 0.00 0.00 0.00 2.57
5297 24012 8.969121 TTTAGCACATTAAGACAACATCAATG 57.031 30.769 0.00 0.00 33.75 2.82
5298 24013 6.579666 AGCACATTAAGACAACATCAATGT 57.420 33.333 0.00 0.00 44.20 2.71
5299 24014 7.686438 AGCACATTAAGACAACATCAATGTA 57.314 32.000 0.00 0.00 40.80 2.29
5300 24015 8.284945 AGCACATTAAGACAACATCAATGTAT 57.715 30.769 0.00 0.00 40.80 2.29
5301 24016 8.186163 AGCACATTAAGACAACATCAATGTATG 58.814 33.333 0.00 0.00 40.80 2.39
5302 24017 7.970061 GCACATTAAGACAACATCAATGTATGT 59.030 33.333 0.00 3.86 40.80 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.580783 ACCTGGTAGCCACATAAACCAT 59.419 45.455 0.00 0.00 41.04 3.55
1 2 1.989586 ACCTGGTAGCCACATAAACCA 59.010 47.619 0.00 0.00 39.66 3.67
5 6 4.584638 AATCAACCTGGTAGCCACATAA 57.415 40.909 0.00 0.00 0.00 1.90
6 7 4.584638 AAATCAACCTGGTAGCCACATA 57.415 40.909 0.00 0.00 0.00 2.29
7 8 3.456380 AAATCAACCTGGTAGCCACAT 57.544 42.857 0.00 0.00 0.00 3.21
8 9 2.969821 AAATCAACCTGGTAGCCACA 57.030 45.000 0.00 0.00 0.00 4.17
26 27 4.938226 GTGGTTTCCATGGTTGAACAAAAA 59.062 37.500 21.29 8.26 35.28 1.94
28 29 3.772025 AGTGGTTTCCATGGTTGAACAAA 59.228 39.130 21.29 9.42 35.28 2.83
29 30 3.370104 AGTGGTTTCCATGGTTGAACAA 58.630 40.909 21.29 13.00 35.28 2.83
30 31 2.955660 GAGTGGTTTCCATGGTTGAACA 59.044 45.455 21.29 12.28 35.28 3.18
31 32 3.222603 AGAGTGGTTTCCATGGTTGAAC 58.777 45.455 12.58 14.40 35.28 3.18
32 33 3.593442 AGAGTGGTTTCCATGGTTGAA 57.407 42.857 12.58 2.75 35.28 2.69
33 34 4.715534 TTAGAGTGGTTTCCATGGTTGA 57.284 40.909 12.58 0.00 35.28 3.18
34 35 5.476599 TCAATTAGAGTGGTTTCCATGGTTG 59.523 40.000 12.58 4.13 35.28 3.77
35 36 5.640147 TCAATTAGAGTGGTTTCCATGGTT 58.360 37.500 12.58 0.00 35.28 3.67
36 37 5.255397 TCAATTAGAGTGGTTTCCATGGT 57.745 39.130 12.58 0.00 35.28 3.55
37 38 5.105756 GGTTCAATTAGAGTGGTTTCCATGG 60.106 44.000 4.97 4.97 35.28 3.66
38 39 5.391950 CGGTTCAATTAGAGTGGTTTCCATG 60.392 44.000 0.00 0.00 35.28 3.66
39 40 4.700213 CGGTTCAATTAGAGTGGTTTCCAT 59.300 41.667 0.00 0.00 35.28 3.41
42 43 4.070009 ACCGGTTCAATTAGAGTGGTTTC 58.930 43.478 0.00 0.00 0.00 2.78
44 45 3.782656 ACCGGTTCAATTAGAGTGGTT 57.217 42.857 0.00 0.00 0.00 3.67
45 46 3.782656 AACCGGTTCAATTAGAGTGGT 57.217 42.857 15.86 0.00 0.00 4.16
46 47 4.998672 TGTAAACCGGTTCAATTAGAGTGG 59.001 41.667 22.53 0.00 0.00 4.00
47 48 6.737254 ATGTAAACCGGTTCAATTAGAGTG 57.263 37.500 22.53 0.00 0.00 3.51
49 50 7.980099 AGAGTATGTAAACCGGTTCAATTAGAG 59.020 37.037 22.53 0.00 0.00 2.43
50 51 7.844009 AGAGTATGTAAACCGGTTCAATTAGA 58.156 34.615 22.53 8.23 0.00 2.10
53 54 7.754851 AAAGAGTATGTAAACCGGTTCAATT 57.245 32.000 22.53 7.47 0.00 2.32
54 55 7.446013 TCAAAAGAGTATGTAAACCGGTTCAAT 59.554 33.333 22.53 16.28 0.00 2.57
55 56 6.766944 TCAAAAGAGTATGTAAACCGGTTCAA 59.233 34.615 22.53 9.44 0.00 2.69
56 57 6.203338 GTCAAAAGAGTATGTAAACCGGTTCA 59.797 38.462 22.53 15.98 0.00 3.18
57 58 6.203338 TGTCAAAAGAGTATGTAAACCGGTTC 59.797 38.462 22.53 9.92 0.00 3.62
59 60 5.613329 TGTCAAAAGAGTATGTAAACCGGT 58.387 37.500 0.00 0.00 0.00 5.28
75 76 3.923461 CGGCAACTGTTCTTTTGTCAAAA 59.077 39.130 10.27 10.27 0.00 2.44
77 78 2.750166 TCGGCAACTGTTCTTTTGTCAA 59.250 40.909 0.00 0.00 0.00 3.18
78 79 2.360844 TCGGCAACTGTTCTTTTGTCA 58.639 42.857 0.00 0.00 0.00 3.58
79 80 3.414549 TTCGGCAACTGTTCTTTTGTC 57.585 42.857 0.00 0.00 0.00 3.18
80 81 3.859411 TTTCGGCAACTGTTCTTTTGT 57.141 38.095 0.00 0.00 0.00 2.83
120 121 0.591741 GATAGGACACGTCGCCGAAG 60.592 60.000 0.00 0.00 37.88 3.79
121 122 1.430632 GATAGGACACGTCGCCGAA 59.569 57.895 0.00 0.00 37.88 4.30
122 123 2.816360 CGATAGGACACGTCGCCGA 61.816 63.158 0.00 0.00 37.88 5.54
125 126 1.720860 CGATACGATAGGACACGTCGC 60.721 57.143 0.00 0.00 42.61 5.19
127 128 1.399471 GGCGATACGATAGGACACGTC 60.399 57.143 0.00 0.00 42.61 4.34
128 129 0.590195 GGCGATACGATAGGACACGT 59.410 55.000 0.00 0.00 44.72 4.49
129 130 0.109873 GGGCGATACGATAGGACACG 60.110 60.000 0.00 0.00 43.77 4.49
130 131 1.199558 GAGGGCGATACGATAGGACAC 59.800 57.143 0.00 0.00 43.77 3.67
133 134 0.322648 TCGAGGGCGATACGATAGGA 59.677 55.000 0.00 0.00 42.51 2.94
134 135 0.727970 CTCGAGGGCGATACGATAGG 59.272 60.000 3.91 0.00 46.80 2.57
137 138 1.440708 CTACTCGAGGGCGATACGAT 58.559 55.000 18.41 0.00 46.80 3.73
138 139 0.602106 CCTACTCGAGGGCGATACGA 60.602 60.000 18.41 0.00 46.80 3.43
139 140 0.602106 TCCTACTCGAGGGCGATACG 60.602 60.000 18.41 0.00 46.80 3.06
140 141 1.602311 TTCCTACTCGAGGGCGATAC 58.398 55.000 18.41 0.00 46.80 2.24
141 142 2.353357 TTTCCTACTCGAGGGCGATA 57.647 50.000 18.41 0.00 46.80 2.92
142 143 1.614413 GATTTCCTACTCGAGGGCGAT 59.386 52.381 18.41 6.40 46.80 4.58
143 144 1.030457 GATTTCCTACTCGAGGGCGA 58.970 55.000 18.41 5.43 46.70 5.54
157 158 1.098050 AGTGCAATGCCGAGGATTTC 58.902 50.000 1.53 0.00 0.00 2.17
158 159 1.474077 GAAGTGCAATGCCGAGGATTT 59.526 47.619 1.53 0.00 0.00 2.17
159 160 1.098050 GAAGTGCAATGCCGAGGATT 58.902 50.000 1.53 0.00 0.00 3.01
160 161 0.749454 GGAAGTGCAATGCCGAGGAT 60.749 55.000 1.53 0.00 0.00 3.24
161 162 1.377202 GGAAGTGCAATGCCGAGGA 60.377 57.895 1.53 0.00 0.00 3.71
163 164 0.169672 CTTGGAAGTGCAATGCCGAG 59.830 55.000 14.14 14.14 0.00 4.63
164 165 0.250684 TCTTGGAAGTGCAATGCCGA 60.251 50.000 6.70 3.34 0.00 5.54
165 166 0.169672 CTCTTGGAAGTGCAATGCCG 59.830 55.000 6.70 0.00 0.00 5.69
166 167 0.529378 CCTCTTGGAAGTGCAATGCC 59.471 55.000 3.51 3.51 34.57 4.40
167 168 0.529378 CCCTCTTGGAAGTGCAATGC 59.471 55.000 0.00 0.00 35.39 3.56
168 169 0.529378 GCCCTCTTGGAAGTGCAATG 59.471 55.000 0.00 0.00 35.39 2.82
169 170 0.112995 TGCCCTCTTGGAAGTGCAAT 59.887 50.000 0.00 0.00 35.39 3.56
170 171 0.538057 CTGCCCTCTTGGAAGTGCAA 60.538 55.000 0.00 0.00 34.60 4.08
171 172 1.073722 CTGCCCTCTTGGAAGTGCA 59.926 57.895 0.00 0.00 34.60 4.57
174 175 2.759795 GCCTGCCCTCTTGGAAGT 59.240 61.111 0.00 0.00 38.27 3.01
176 177 2.532715 AGGCCTGCCCTCTTGGAA 60.533 61.111 3.11 0.00 41.21 3.53
177 178 3.333219 CAGGCCTGCCCTCTTGGA 61.333 66.667 22.33 0.00 44.09 3.53
178 179 4.437587 CCAGGCCTGCCCTCTTGG 62.438 72.222 28.39 8.26 44.09 3.61
191 192 3.052082 CTTCACCACTGCGCCAGG 61.052 66.667 4.18 6.64 35.51 4.45
192 193 2.281070 ACTTCACCACTGCGCCAG 60.281 61.111 4.18 4.99 37.52 4.85
193 194 2.280797 GACTTCACCACTGCGCCA 60.281 61.111 4.18 0.00 0.00 5.69
194 195 3.050275 GGACTTCACCACTGCGCC 61.050 66.667 4.18 0.00 0.00 6.53
197 198 1.003233 GGGAGGACTTCACCACTGC 60.003 63.158 0.00 0.00 0.00 4.40
203 204 0.765510 ACAAGTGGGGAGGACTTCAC 59.234 55.000 0.00 0.00 31.05 3.18
204 205 0.764890 CACAAGTGGGGAGGACTTCA 59.235 55.000 0.00 0.00 31.05 3.02
206 207 1.456287 GCACAAGTGGGGAGGACTT 59.544 57.895 2.00 0.00 33.82 3.01
207 208 2.529744 GGCACAAGTGGGGAGGACT 61.530 63.158 2.00 0.00 0.00 3.85
209 210 0.474854 TTAGGCACAAGTGGGGAGGA 60.475 55.000 2.00 0.00 0.00 3.71
210 211 0.404040 TTTAGGCACAAGTGGGGAGG 59.596 55.000 2.00 0.00 0.00 4.30
211 212 1.614317 CCTTTAGGCACAAGTGGGGAG 60.614 57.143 2.00 0.00 0.00 4.30
212 213 0.404040 CCTTTAGGCACAAGTGGGGA 59.596 55.000 2.00 0.00 0.00 4.81
214 215 1.534729 GACCTTTAGGCACAAGTGGG 58.465 55.000 2.00 0.00 39.32 4.61
216 217 2.154462 CAGGACCTTTAGGCACAAGTG 58.846 52.381 0.00 0.00 39.32 3.16
217 218 2.039084 CTCAGGACCTTTAGGCACAAGT 59.961 50.000 0.00 0.00 39.32 3.16
218 219 2.039084 ACTCAGGACCTTTAGGCACAAG 59.961 50.000 0.00 0.00 39.32 3.16
219 220 2.054799 ACTCAGGACCTTTAGGCACAA 58.945 47.619 0.00 0.00 39.32 3.33
220 221 1.729586 ACTCAGGACCTTTAGGCACA 58.270 50.000 0.00 0.00 39.32 4.57
222 223 2.708861 TCAAACTCAGGACCTTTAGGCA 59.291 45.455 0.00 0.00 39.32 4.75
223 224 3.418684 TCAAACTCAGGACCTTTAGGC 57.581 47.619 0.00 0.00 39.32 3.93
224 225 4.072839 GGTTCAAACTCAGGACCTTTAGG 58.927 47.826 0.00 0.00 42.17 2.69
225 226 4.714632 TGGTTCAAACTCAGGACCTTTAG 58.285 43.478 0.00 0.00 0.00 1.85
226 227 4.714632 CTGGTTCAAACTCAGGACCTTTA 58.285 43.478 0.00 0.00 0.00 1.85
228 229 2.749800 GCTGGTTCAAACTCAGGACCTT 60.750 50.000 0.00 0.00 31.84 3.50
229 230 1.202818 GCTGGTTCAAACTCAGGACCT 60.203 52.381 11.04 0.00 31.84 3.85
230 231 1.239347 GCTGGTTCAAACTCAGGACC 58.761 55.000 11.04 0.00 31.84 4.46
231 232 1.202818 AGGCTGGTTCAAACTCAGGAC 60.203 52.381 11.04 0.00 31.84 3.85
235 236 2.957402 ATGAGGCTGGTTCAAACTCA 57.043 45.000 0.00 0.00 41.79 3.41
236 237 2.680339 GCTATGAGGCTGGTTCAAACTC 59.320 50.000 0.00 0.00 0.00 3.01
237 238 2.040278 TGCTATGAGGCTGGTTCAAACT 59.960 45.455 0.00 0.00 0.00 2.66
238 239 2.436417 TGCTATGAGGCTGGTTCAAAC 58.564 47.619 0.00 0.00 0.00 2.93
239 240 2.877097 TGCTATGAGGCTGGTTCAAA 57.123 45.000 0.00 0.00 0.00 2.69
241 242 2.025981 ACAATGCTATGAGGCTGGTTCA 60.026 45.455 0.00 0.00 0.00 3.18
244 245 2.774234 AGTACAATGCTATGAGGCTGGT 59.226 45.455 0.00 0.00 0.00 4.00
245 246 3.482156 AGTACAATGCTATGAGGCTGG 57.518 47.619 0.00 0.00 0.00 4.85
246 247 4.497006 GCAAAGTACAATGCTATGAGGCTG 60.497 45.833 13.76 0.00 39.46 4.85
247 248 3.629398 GCAAAGTACAATGCTATGAGGCT 59.371 43.478 13.76 0.00 39.46 4.58
248 249 3.378112 TGCAAAGTACAATGCTATGAGGC 59.622 43.478 19.53 0.00 42.97 4.70
249 250 4.036027 CCTGCAAAGTACAATGCTATGAGG 59.964 45.833 19.53 14.80 42.97 3.86
251 252 3.947196 CCCTGCAAAGTACAATGCTATGA 59.053 43.478 19.53 3.43 42.97 2.15
252 253 3.067180 CCCCTGCAAAGTACAATGCTATG 59.933 47.826 19.53 11.68 42.97 2.23
253 254 3.290710 CCCCTGCAAAGTACAATGCTAT 58.709 45.455 19.53 0.00 42.97 2.97
255 256 1.203050 ACCCCTGCAAAGTACAATGCT 60.203 47.619 19.53 1.40 42.97 3.79
256 257 1.256812 ACCCCTGCAAAGTACAATGC 58.743 50.000 14.06 14.06 42.86 3.56
258 259 4.042934 AGTCTTACCCCTGCAAAGTACAAT 59.957 41.667 0.00 0.00 0.00 2.71
259 260 3.393278 AGTCTTACCCCTGCAAAGTACAA 59.607 43.478 0.00 0.00 0.00 2.41
260 261 2.976882 AGTCTTACCCCTGCAAAGTACA 59.023 45.455 0.00 0.00 0.00 2.90
261 262 3.697619 AGTCTTACCCCTGCAAAGTAC 57.302 47.619 0.00 0.00 0.00 2.73
263 264 4.717279 TTTAGTCTTACCCCTGCAAAGT 57.283 40.909 0.00 0.00 0.00 2.66
264 265 5.125578 GGAATTTAGTCTTACCCCTGCAAAG 59.874 44.000 0.00 0.00 0.00 2.77
267 268 3.850173 AGGAATTTAGTCTTACCCCTGCA 59.150 43.478 0.00 0.00 0.00 4.41
268 269 4.505324 AGGAATTTAGTCTTACCCCTGC 57.495 45.455 0.00 0.00 0.00 4.85
269 270 9.945904 GATTATAGGAATTTAGTCTTACCCCTG 57.054 37.037 0.00 0.00 0.00 4.45
270 271 9.113797 GGATTATAGGAATTTAGTCTTACCCCT 57.886 37.037 0.00 0.00 0.00 4.79
271 272 8.327271 GGGATTATAGGAATTTAGTCTTACCCC 58.673 40.741 0.00 0.00 0.00 4.95
272 273 9.113797 AGGGATTATAGGAATTTAGTCTTACCC 57.886 37.037 0.00 0.00 0.00 3.69
275 276 9.335211 GGGAGGGATTATAGGAATTTAGTCTTA 57.665 37.037 0.00 0.00 0.00 2.10
277 278 6.736179 GGGGAGGGATTATAGGAATTTAGTCT 59.264 42.308 0.00 0.00 0.00 3.24
278 279 6.504279 TGGGGAGGGATTATAGGAATTTAGTC 59.496 42.308 0.00 0.00 0.00 2.59
279 280 6.274908 GTGGGGAGGGATTATAGGAATTTAGT 59.725 42.308 0.00 0.00 0.00 2.24
280 281 6.576442 CGTGGGGAGGGATTATAGGAATTTAG 60.576 46.154 0.00 0.00 0.00 1.85
281 282 5.249852 CGTGGGGAGGGATTATAGGAATTTA 59.750 44.000 0.00 0.00 0.00 1.40
282 283 4.042934 CGTGGGGAGGGATTATAGGAATTT 59.957 45.833 0.00 0.00 0.00 1.82
283 284 3.587506 CGTGGGGAGGGATTATAGGAATT 59.412 47.826 0.00 0.00 0.00 2.17
285 286 2.616524 CGTGGGGAGGGATTATAGGAA 58.383 52.381 0.00 0.00 0.00 3.36
287 288 0.613777 GCGTGGGGAGGGATTATAGG 59.386 60.000 0.00 0.00 0.00 2.57
288 289 0.613777 GGCGTGGGGAGGGATTATAG 59.386 60.000 0.00 0.00 0.00 1.31
289 290 0.838987 GGGCGTGGGGAGGGATTATA 60.839 60.000 0.00 0.00 0.00 0.98
291 292 2.770904 GGGCGTGGGGAGGGATTA 60.771 66.667 0.00 0.00 0.00 1.75
301 302 4.579384 ACACAAGGTGGGGCGTGG 62.579 66.667 1.07 0.00 37.94 4.94
302 303 3.286751 CACACAAGGTGGGGCGTG 61.287 66.667 1.07 0.00 44.04 5.34
310 311 3.810743 GCATAGAAACTCCCACACAAGGT 60.811 47.826 0.00 0.00 0.00 3.50
311 312 2.749621 GCATAGAAACTCCCACACAAGG 59.250 50.000 0.00 0.00 0.00 3.61
312 313 3.189287 GTGCATAGAAACTCCCACACAAG 59.811 47.826 0.00 0.00 0.00 3.16
314 315 2.371841 AGTGCATAGAAACTCCCACACA 59.628 45.455 0.00 0.00 0.00 3.72
315 316 2.744202 CAGTGCATAGAAACTCCCACAC 59.256 50.000 0.00 0.00 0.00 3.82
316 317 2.290260 CCAGTGCATAGAAACTCCCACA 60.290 50.000 0.00 0.00 0.00 4.17
317 318 2.359900 CCAGTGCATAGAAACTCCCAC 58.640 52.381 0.00 0.00 0.00 4.61
319 320 1.282157 ACCCAGTGCATAGAAACTCCC 59.718 52.381 0.00 0.00 0.00 4.30
320 321 2.237392 AGACCCAGTGCATAGAAACTCC 59.763 50.000 0.00 0.00 0.00 3.85
322 323 3.177228 AGAGACCCAGTGCATAGAAACT 58.823 45.455 0.00 0.00 0.00 2.66
325 326 3.107402 AGAGAGACCCAGTGCATAGAA 57.893 47.619 0.00 0.00 0.00 2.10
326 327 2.836636 AGAGAGACCCAGTGCATAGA 57.163 50.000 0.00 0.00 0.00 1.98
327 328 3.030291 AGAAGAGAGACCCAGTGCATAG 58.970 50.000 0.00 0.00 0.00 2.23
328 329 3.107402 AGAAGAGAGACCCAGTGCATA 57.893 47.619 0.00 0.00 0.00 3.14
329 330 1.949799 AGAAGAGAGACCCAGTGCAT 58.050 50.000 0.00 0.00 0.00 3.96
330 331 1.620819 GAAGAAGAGAGACCCAGTGCA 59.379 52.381 0.00 0.00 0.00 4.57
332 333 4.252073 CAATGAAGAAGAGAGACCCAGTG 58.748 47.826 0.00 0.00 0.00 3.66
335 336 2.639347 TGCAATGAAGAAGAGAGACCCA 59.361 45.455 0.00 0.00 0.00 4.51
337 338 3.688673 CCTTGCAATGAAGAAGAGAGACC 59.311 47.826 0.00 0.00 0.00 3.85
338 339 4.573900 TCCTTGCAATGAAGAAGAGAGAC 58.426 43.478 0.00 0.00 0.00 3.36
339 340 4.897509 TCCTTGCAATGAAGAAGAGAGA 57.102 40.909 0.00 0.00 0.00 3.10
340 341 5.954296 TTTCCTTGCAATGAAGAAGAGAG 57.046 39.130 15.37 0.00 0.00 3.20
342 343 5.798934 CGAATTTCCTTGCAATGAAGAAGAG 59.201 40.000 15.37 6.12 0.00 2.85
343 344 5.473162 TCGAATTTCCTTGCAATGAAGAAGA 59.527 36.000 15.37 11.49 0.00 2.87
345 346 5.703978 TCGAATTTCCTTGCAATGAAGAA 57.296 34.783 15.37 7.13 0.00 2.52
347 348 6.956299 ATTTCGAATTTCCTTGCAATGAAG 57.044 33.333 15.37 6.26 0.00 3.02
348 349 9.434420 AATTATTTCGAATTTCCTTGCAATGAA 57.566 25.926 12.47 12.47 0.00 2.57
349 350 9.434420 AAATTATTTCGAATTTCCTTGCAATGA 57.566 25.926 0.00 0.00 34.62 2.57
350 351 9.480538 CAAATTATTTCGAATTTCCTTGCAATG 57.519 29.630 0.00 0.00 36.99 2.82
351 352 8.667463 CCAAATTATTTCGAATTTCCTTGCAAT 58.333 29.630 0.00 0.00 36.99 3.56
352 353 7.118971 CCCAAATTATTTCGAATTTCCTTGCAA 59.881 33.333 0.00 0.00 36.99 4.08
353 354 6.593382 CCCAAATTATTTCGAATTTCCTTGCA 59.407 34.615 0.00 0.00 36.99 4.08
354 355 6.037062 CCCCAAATTATTTCGAATTTCCTTGC 59.963 38.462 0.00 0.00 36.99 4.01
355 356 7.064490 CACCCCAAATTATTTCGAATTTCCTTG 59.936 37.037 0.00 1.00 36.99 3.61
357 358 6.639563 CACCCCAAATTATTTCGAATTTCCT 58.360 36.000 0.00 0.00 36.99 3.36
358 359 5.293324 GCACCCCAAATTATTTCGAATTTCC 59.707 40.000 0.00 0.00 36.99 3.13
359 360 6.035975 CAGCACCCCAAATTATTTCGAATTTC 59.964 38.462 0.00 0.00 36.99 2.17
360 361 5.874261 CAGCACCCCAAATTATTTCGAATTT 59.126 36.000 0.00 0.00 39.13 1.82
363 364 4.082845 TCAGCACCCCAAATTATTTCGAA 58.917 39.130 0.00 0.00 0.00 3.71
365 366 3.734902 GCTCAGCACCCCAAATTATTTCG 60.735 47.826 0.00 0.00 0.00 3.46
366 367 3.195396 TGCTCAGCACCCCAAATTATTTC 59.805 43.478 0.00 0.00 31.71 2.17
369 370 2.530460 TGCTCAGCACCCCAAATTAT 57.470 45.000 0.00 0.00 31.71 1.28
370 371 2.101783 CATGCTCAGCACCCCAAATTA 58.898 47.619 0.00 0.00 43.04 1.40
373 374 2.277591 GCATGCTCAGCACCCCAAA 61.278 57.895 11.37 0.00 43.04 3.28
374 375 2.677524 GCATGCTCAGCACCCCAA 60.678 61.111 11.37 0.00 43.04 4.12
376 377 2.277591 TTTGCATGCTCAGCACCCC 61.278 57.895 20.33 0.00 43.04 4.95
377 378 1.080298 GTTTGCATGCTCAGCACCC 60.080 57.895 20.33 0.00 43.04 4.61
379 380 1.443194 CGGTTTGCATGCTCAGCAC 60.443 57.895 20.33 7.87 43.04 4.40
380 381 2.956194 CGGTTTGCATGCTCAGCA 59.044 55.556 20.33 0.00 44.86 4.41
381 382 2.505557 GCGGTTTGCATGCTCAGC 60.506 61.111 20.33 16.44 45.45 4.26
390 391 4.999939 CACCAAGCGGCGGTTTGC 63.000 66.667 22.98 0.00 45.38 3.68
391 392 4.341502 CCACCAAGCGGCGGTTTG 62.342 66.667 22.98 21.03 33.25 2.93
392 393 2.962142 TTACCACCAAGCGGCGGTTT 62.962 55.000 22.98 9.95 46.08 3.27
393 394 3.479127 TTACCACCAAGCGGCGGTT 62.479 57.895 19.75 19.75 46.08 4.44
395 396 3.428282 GTTACCACCAAGCGGCGG 61.428 66.667 9.78 0.00 40.71 6.13
397 398 2.038837 GGAGTTACCACCAAGCGGC 61.039 63.158 0.00 0.00 38.79 6.53
398 399 1.376812 GGGAGTTACCACCAAGCGG 60.377 63.158 0.00 0.00 41.20 5.52
399 400 1.740296 CGGGAGTTACCACCAAGCG 60.740 63.158 0.00 0.00 41.20 4.68
401 402 0.036671 GTCCGGGAGTTACCACCAAG 60.037 60.000 0.00 0.00 41.20 3.61
402 403 0.763604 TGTCCGGGAGTTACCACCAA 60.764 55.000 0.00 0.00 41.20 3.67
403 404 0.545787 ATGTCCGGGAGTTACCACCA 60.546 55.000 0.00 0.00 41.20 4.17
404 405 0.107848 CATGTCCGGGAGTTACCACC 60.108 60.000 0.00 0.00 41.20 4.61
406 407 1.874129 ATCATGTCCGGGAGTTACCA 58.126 50.000 0.00 0.00 41.20 3.25
407 408 2.169769 TCAATCATGTCCGGGAGTTACC 59.830 50.000 0.00 0.00 38.08 2.85
409 410 3.371034 TCTCAATCATGTCCGGGAGTTA 58.629 45.455 0.00 0.00 0.00 2.24
410 411 2.187958 TCTCAATCATGTCCGGGAGTT 58.812 47.619 0.00 0.00 0.00 3.01
412 413 3.056250 CCTATCTCAATCATGTCCGGGAG 60.056 52.174 0.00 0.00 0.00 4.30
413 414 2.899900 CCTATCTCAATCATGTCCGGGA 59.100 50.000 0.00 0.00 0.00 5.14
414 415 2.613977 GCCTATCTCAATCATGTCCGGG 60.614 54.545 0.00 0.00 0.00 5.73
415 416 2.037641 TGCCTATCTCAATCATGTCCGG 59.962 50.000 0.00 0.00 0.00 5.14
416 417 3.391506 TGCCTATCTCAATCATGTCCG 57.608 47.619 0.00 0.00 0.00 4.79
417 418 3.501445 GCTTGCCTATCTCAATCATGTCC 59.499 47.826 0.00 0.00 0.00 4.02
420 421 3.396560 TCGCTTGCCTATCTCAATCATG 58.603 45.455 0.00 0.00 0.00 3.07
421 422 3.758755 TCGCTTGCCTATCTCAATCAT 57.241 42.857 0.00 0.00 0.00 2.45
426 427 3.396560 CATCATTCGCTTGCCTATCTCA 58.603 45.455 0.00 0.00 0.00 3.27
454 5052 1.915078 AACATGGGAAGCGAGGGAGG 61.915 60.000 0.00 0.00 0.00 4.30
455 5053 0.745845 CAACATGGGAAGCGAGGGAG 60.746 60.000 0.00 0.00 0.00 4.30
456 5054 1.198094 TCAACATGGGAAGCGAGGGA 61.198 55.000 0.00 0.00 0.00 4.20
457 5055 0.107017 ATCAACATGGGAAGCGAGGG 60.107 55.000 0.00 0.00 0.00 4.30
459 5057 0.379669 GCATCAACATGGGAAGCGAG 59.620 55.000 0.00 0.00 0.00 5.03
460 5058 2.481212 GCATCAACATGGGAAGCGA 58.519 52.632 0.00 0.00 0.00 4.93
462 5060 1.031571 TCCGCATCAACATGGGAAGC 61.032 55.000 0.00 2.18 44.08 3.86
463 5061 1.019673 CTCCGCATCAACATGGGAAG 58.980 55.000 0.00 0.00 44.08 3.46
464 5062 1.031571 GCTCCGCATCAACATGGGAA 61.032 55.000 0.00 0.00 44.08 3.97
465 5063 1.451927 GCTCCGCATCAACATGGGA 60.452 57.895 0.00 0.00 44.08 4.37
484 5093 1.079681 TCGTATTGTGACGGTGGCC 60.080 57.895 0.00 0.00 43.12 5.36
485 5094 1.693083 GCTCGTATTGTGACGGTGGC 61.693 60.000 0.00 0.00 43.12 5.01
505 5114 0.109873 GTGCAGTGTTGAGCAGATGC 60.110 55.000 0.00 0.00 42.14 3.91
521 5130 0.610687 ACTACTGAAGAGGGCAGTGC 59.389 55.000 6.55 6.55 45.52 4.40
535 5144 1.358103 TGAGGTCAGTGCCCTACTACT 59.642 52.381 0.00 0.00 37.60 2.57
537 5146 2.848678 ATGAGGTCAGTGCCCTACTA 57.151 50.000 0.00 0.00 37.60 1.82
546 5155 3.031736 AGGCGTTGTATATGAGGTCAGT 58.968 45.455 0.00 0.00 0.00 3.41
547 5156 3.735237 AGGCGTTGTATATGAGGTCAG 57.265 47.619 0.00 0.00 0.00 3.51
548 5157 3.449377 TCAAGGCGTTGTATATGAGGTCA 59.551 43.478 17.96 0.00 34.98 4.02
604 5217 3.164610 AACAGGCAGCCCATTGGGT 62.165 57.895 22.82 7.26 46.51 4.51
608 5221 3.064324 GCGAACAGGCAGCCCATT 61.064 61.111 8.22 1.92 0.00 3.16
680 5293 1.816074 CAGTAAAAGCCAGCCGGTTA 58.184 50.000 1.90 0.00 33.28 2.85
708 5321 9.482627 AACACTTATTGATTTCGCCAAATTTTA 57.517 25.926 0.00 0.00 31.94 1.52
713 5326 6.078202 TGAACACTTATTGATTTCGCCAAA 57.922 33.333 0.00 0.00 0.00 3.28
793 5406 6.773080 TCAAATTTGCAAACTTGTGAACATG 58.227 32.000 27.00 5.91 0.00 3.21
794 5407 6.981762 TCAAATTTGCAAACTTGTGAACAT 57.018 29.167 27.00 1.34 0.00 2.71
795 5408 6.791887 TTCAAATTTGCAAACTTGTGAACA 57.208 29.167 27.00 9.81 0.00 3.18
796 5409 8.499514 TTTTTCAAATTTGCAAACTTGTGAAC 57.500 26.923 27.00 0.00 0.00 3.18
902 6591 2.031919 CTGCACAACTGCCGGGTA 59.968 61.111 2.18 0.00 43.51 3.69
914 6603 1.432270 GCGGATTCACCTAGCTGCAC 61.432 60.000 1.02 0.00 36.31 4.57
1413 7278 2.101700 GCTGGCAGAGCGCTTAATT 58.898 52.632 20.86 0.00 41.91 1.40
1534 7407 1.261619 CGTTCACACTTCACCTCTTGC 59.738 52.381 0.00 0.00 0.00 4.01
1616 7493 2.584418 CGGCAGCATCGTCCTCAG 60.584 66.667 0.00 0.00 0.00 3.35
1652 7529 1.067295 TGGCAGGACAGGAAACAGAT 58.933 50.000 0.00 0.00 0.00 2.90
1738 7615 1.600485 ACTTCGGTAAAAACTGCCACG 59.400 47.619 0.00 0.00 0.00 4.94
1746 7623 3.547746 AGCTTGTCCACTTCGGTAAAAA 58.452 40.909 0.00 0.00 35.57 1.94
1747 7624 3.202829 AGCTTGTCCACTTCGGTAAAA 57.797 42.857 0.00 0.00 35.57 1.52
1995 7876 3.788227 ACCACAGTTCTGAAGGCATAA 57.212 42.857 6.83 0.00 0.00 1.90
1996 7877 3.181445 ACAACCACAGTTCTGAAGGCATA 60.181 43.478 6.83 0.00 32.45 3.14
2003 7884 6.295123 GGATTACTAGACAACCACAGTTCTGA 60.295 42.308 6.83 0.00 32.45 3.27
2040 7921 2.126071 CACAGACCCGTGTAGGCG 60.126 66.667 0.00 0.00 39.21 5.52
2062 7943 8.164733 ACTCTTAGAGCCACTATTAGTATAGCA 58.835 37.037 9.44 0.00 34.14 3.49
2168 8049 5.957132 AGTTCAGCCCATCATATTTATGGT 58.043 37.500 11.30 0.00 42.06 3.55
2203 8084 0.253044 CCTCGCAAATCTCCTTGGGA 59.747 55.000 3.51 3.51 43.58 4.37
2204 8085 1.379642 GCCTCGCAAATCTCCTTGGG 61.380 60.000 0.00 0.00 39.82 4.12
2207 8088 1.028868 GCTGCCTCGCAAATCTCCTT 61.029 55.000 0.00 0.00 38.41 3.36
2235 8116 1.258445 ATCACCGTCAGACCCACCTC 61.258 60.000 0.00 0.00 0.00 3.85
2249 8130 3.591196 TGGTGCTAAATTTGCATCACC 57.409 42.857 18.52 18.32 45.26 4.02
2287 8168 1.697432 CCAAACTCCTCACTGGTACCA 59.303 52.381 15.39 15.39 37.07 3.25
2290 8171 1.071699 GTGCCAAACTCCTCACTGGTA 59.928 52.381 0.00 0.00 37.07 3.25
2408 8295 9.429359 GAGACCTGACATGAATATATTACAAGG 57.571 37.037 0.00 5.29 0.00 3.61
2841 14605 5.884792 AGATTGAGATCCTGGAAATGTGAAC 59.115 40.000 0.00 0.00 32.44 3.18
2863 14627 8.554490 AAGCTCTCTATTTATAAGTGGGAAGA 57.446 34.615 0.00 0.00 0.00 2.87
2866 14630 7.914427 TGAAGCTCTCTATTTATAAGTGGGA 57.086 36.000 0.00 0.00 0.00 4.37
2909 14673 7.160726 CCCCATAAATGTTCAATTCTTGTGTT 58.839 34.615 0.00 0.00 0.00 3.32
2910 14674 6.700352 CCCCATAAATGTTCAATTCTTGTGT 58.300 36.000 0.00 0.00 0.00 3.72
2911 14675 5.581874 GCCCCATAAATGTTCAATTCTTGTG 59.418 40.000 0.00 0.00 0.00 3.33
2912 14676 5.248020 TGCCCCATAAATGTTCAATTCTTGT 59.752 36.000 0.00 0.00 0.00 3.16
2913 14677 5.732633 TGCCCCATAAATGTTCAATTCTTG 58.267 37.500 0.00 0.00 0.00 3.02
2914 14678 6.564557 ATGCCCCATAAATGTTCAATTCTT 57.435 33.333 0.00 0.00 0.00 2.52
2916 14680 6.458615 GCAAATGCCCCATAAATGTTCAATTC 60.459 38.462 0.00 0.00 34.31 2.17
3131 15236 3.677527 CAGCTCTGCCTTGGTTGG 58.322 61.111 0.00 0.00 0.00 3.77
3154 15267 4.142881 GCCATCCGTACAAAAGAAAGAGAC 60.143 45.833 0.00 0.00 0.00 3.36
3177 15290 3.871594 CACTAAAGGGGAATTACTGAGCG 59.128 47.826 0.00 0.00 0.00 5.03
3187 15300 3.008049 GCTCTGTTCTCACTAAAGGGGAA 59.992 47.826 0.00 0.00 0.00 3.97
3245 15358 4.680237 CTCGAACACAGGCGGGCA 62.680 66.667 3.78 0.00 0.00 5.36
3361 15495 7.168219 ACTTTGCCATCATTGTACTTCTAAGA 58.832 34.615 0.00 0.00 0.00 2.10
3432 15570 1.660607 CCGACCACTTCATGAACATCG 59.339 52.381 3.38 10.74 0.00 3.84
3433 15571 2.673368 GTCCGACCACTTCATGAACATC 59.327 50.000 3.38 0.00 0.00 3.06
3434 15572 2.615493 GGTCCGACCACTTCATGAACAT 60.615 50.000 13.05 0.00 38.42 2.71
3435 15573 1.270625 GGTCCGACCACTTCATGAACA 60.271 52.381 13.05 0.00 38.42 3.18
3436 15574 1.439679 GGTCCGACCACTTCATGAAC 58.560 55.000 13.05 0.00 38.42 3.18
3437 15575 0.323629 GGGTCCGACCACTTCATGAA 59.676 55.000 19.43 8.12 41.02 2.57
3438 15576 0.544357 AGGGTCCGACCACTTCATGA 60.544 55.000 19.43 0.00 41.02 3.07
3439 15577 0.324943 AAGGGTCCGACCACTTCATG 59.675 55.000 19.43 0.00 41.02 3.07
3440 15578 0.613777 GAAGGGTCCGACCACTTCAT 59.386 55.000 27.35 9.66 41.31 2.57
3441 15579 1.477685 GGAAGGGTCCGACCACTTCA 61.478 60.000 30.15 0.00 42.38 3.02
3442 15580 1.295746 GGAAGGGTCCGACCACTTC 59.704 63.158 25.81 25.81 41.02 3.01
3443 15581 2.222013 GGGAAGGGTCCGACCACTT 61.222 63.158 19.43 17.88 46.04 3.16
3444 15582 2.606826 GGGAAGGGTCCGACCACT 60.607 66.667 19.43 10.80 46.04 4.00
3445 15583 3.714001 GGGGAAGGGTCCGACCAC 61.714 72.222 19.43 8.70 46.04 4.16
3452 15590 4.735599 AGGGTCCGGGGAAGGGTC 62.736 72.222 0.00 0.00 0.00 4.46
3468 15606 4.819761 TAGCTCCCGCTTGCGCAG 62.820 66.667 11.31 6.32 46.47 5.18
3471 15609 2.202932 ATGTAGCTCCCGCTTGCG 60.203 61.111 8.14 8.14 46.47 4.85
3472 15610 2.828128 GCATGTAGCTCCCGCTTGC 61.828 63.158 0.00 0.00 46.47 4.01
3473 15611 1.450134 TGCATGTAGCTCCCGCTTG 60.450 57.895 0.00 0.00 46.47 4.01
3474 15612 1.450312 GTGCATGTAGCTCCCGCTT 60.450 57.895 0.00 0.00 46.47 4.68
3480 15618 2.897350 GCCCGGTGCATGTAGCTC 60.897 66.667 11.25 0.00 45.94 4.09
3481 15619 3.402681 AGCCCGGTGCATGTAGCT 61.403 61.111 15.92 4.82 45.94 3.32
3482 15620 3.204827 CAGCCCGGTGCATGTAGC 61.205 66.667 15.92 2.56 44.83 3.58
3483 15621 3.204827 GCAGCCCGGTGCATGTAG 61.205 66.667 13.70 0.91 43.41 2.74
3484 15622 4.794648 GGCAGCCCGGTGCATGTA 62.795 66.667 19.47 0.00 45.93 2.29
3511 15649 8.668353 GCAAATATATCACCATGAACATCGTAT 58.332 33.333 0.00 0.00 0.00 3.06
3512 15650 7.877612 AGCAAATATATCACCATGAACATCGTA 59.122 33.333 0.00 0.00 0.00 3.43
3513 15651 6.712095 AGCAAATATATCACCATGAACATCGT 59.288 34.615 0.00 0.00 0.00 3.73
3514 15652 7.095102 TGAGCAAATATATCACCATGAACATCG 60.095 37.037 0.00 0.00 0.00 3.84
3650 15818 8.186709 TGCAATATCTGAGATATGAGTGAAGA 57.813 34.615 15.21 0.00 0.00 2.87
3704 15872 8.031864 TCTATTAAGTGCTCTTCTTCAACTGAG 58.968 37.037 3.91 0.00 35.36 3.35
3829 15997 7.370383 AGAGGTGCTACATTTGTACAAATTTG 58.630 34.615 27.33 21.65 38.84 2.32
3854 16022 8.210946 CCACCAAAAGACATGTAGATAATCCTA 58.789 37.037 0.00 0.00 0.00 2.94
3902 16071 6.237901 TCATTCTACAGTGCAACAGGTTTAT 58.762 36.000 0.00 0.00 41.43 1.40
3922 16092 3.983344 GTGTGCGCTTTTGAATTCTCATT 59.017 39.130 9.73 0.00 0.00 2.57
4005 16190 2.467566 TCCCTGATGATGATGATGCG 57.532 50.000 0.00 0.00 0.00 4.73
4170 16361 3.688272 CTTGGCAAATGAGCGTATCAAG 58.312 45.455 0.00 0.00 42.53 3.02
4272 16463 0.694771 AGGCATCCAAGCTTCTGTCA 59.305 50.000 0.00 0.00 34.17 3.58
4274 16465 1.542492 CAAGGCATCCAAGCTTCTGT 58.458 50.000 0.00 0.00 34.17 3.41
4322 16520 4.206375 TCAGCCTGAAACATGTCTTTTCA 58.794 39.130 10.28 10.28 39.99 2.69
4352 16550 1.324740 GGCAAGCTGGCAATCCATCA 61.325 55.000 16.69 0.00 42.51 3.07
4366 16564 3.820467 TCACCAATTACAGACTTGGCAAG 59.180 43.478 25.06 25.06 44.74 4.01
4377 16679 5.105567 ACGATAACCCATCACCAATTACA 57.894 39.130 0.00 0.00 32.71 2.41
4456 16765 3.517602 CGTTGTTTGGATCCTCATCGTA 58.482 45.455 14.23 0.00 0.00 3.43
4506 16817 2.370849 ACGGTTTACTGTTCCTGGTCAT 59.629 45.455 0.00 0.00 29.59 3.06
4571 16883 3.430236 GCTTGCCACCAAAGTTAACAACT 60.430 43.478 8.61 0.00 45.46 3.16
4574 16893 2.383855 AGCTTGCCACCAAAGTTAACA 58.616 42.857 8.61 0.00 0.00 2.41
4649 19659 3.679389 ACTTCATAGTTGCCTTGGTCAG 58.321 45.455 0.00 0.00 0.00 3.51
4712 19722 5.601662 ACATACAAACGATGAGGTGGATAG 58.398 41.667 0.00 0.00 0.00 2.08
4820 19837 7.716768 ATAGTTTTTCCTAGCTAAATCGAGC 57.283 36.000 0.00 0.00 43.19 5.03
4925 23600 8.494347 CGATATTTTGCTTTGAATTTGACCAAA 58.506 29.630 0.00 0.00 34.46 3.28
4995 23673 9.767228 CAATGATAAAGAAAATGGCCATATCAA 57.233 29.630 21.15 10.47 33.50 2.57
5002 23680 6.539464 TGCAATCAATGATAAAGAAAATGGCC 59.461 34.615 0.00 0.00 0.00 5.36
5003 23681 7.542534 TGCAATCAATGATAAAGAAAATGGC 57.457 32.000 0.00 0.00 0.00 4.40
5043 23721 2.062971 ATCATGGCCAGCTTGGTAAG 57.937 50.000 13.05 0.00 40.46 2.34
5044 23722 3.882102 ATATCATGGCCAGCTTGGTAA 57.118 42.857 13.05 0.00 40.46 2.85
5045 23723 4.847198 CATATATCATGGCCAGCTTGGTA 58.153 43.478 13.05 5.84 40.46 3.25
5046 23724 3.693807 CATATATCATGGCCAGCTTGGT 58.306 45.455 13.05 3.19 40.46 3.67
5047 23725 2.426024 GCATATATCATGGCCAGCTTGG 59.574 50.000 13.05 0.00 41.55 3.61
5048 23726 3.353557 AGCATATATCATGGCCAGCTTG 58.646 45.455 13.05 4.75 0.00 4.01
5049 23727 3.733883 AGCATATATCATGGCCAGCTT 57.266 42.857 13.05 0.00 0.00 3.74
5050 23728 4.849813 TTAGCATATATCATGGCCAGCT 57.150 40.909 13.05 14.38 35.06 4.24
5051 23729 4.946157 AGTTTAGCATATATCATGGCCAGC 59.054 41.667 13.05 6.38 0.00 4.85
5052 23730 5.942236 ACAGTTTAGCATATATCATGGCCAG 59.058 40.000 13.05 3.43 0.00 4.85
5053 23731 5.879763 ACAGTTTAGCATATATCATGGCCA 58.120 37.500 8.56 8.56 0.00 5.36
5054 23732 6.824305 AACAGTTTAGCATATATCATGGCC 57.176 37.500 0.00 0.00 0.00 5.36
5055 23733 8.103948 AGAAACAGTTTAGCATATATCATGGC 57.896 34.615 0.00 0.00 0.00 4.40
5073 23751 8.427181 GCATATAATCATGCGTTAAGAAACAG 57.573 34.615 0.00 0.00 41.73 3.16
5092 23771 7.892771 TGATGGGGCAACATATTTTAGCATATA 59.107 33.333 0.00 0.00 39.74 0.86
5093 23772 6.725369 TGATGGGGCAACATATTTTAGCATAT 59.275 34.615 0.00 0.00 39.74 1.78
5094 23773 6.073981 TGATGGGGCAACATATTTTAGCATA 58.926 36.000 0.00 0.00 39.74 3.14
5095 23774 4.900652 TGATGGGGCAACATATTTTAGCAT 59.099 37.500 0.00 0.00 39.74 3.79
5096 23775 4.285020 TGATGGGGCAACATATTTTAGCA 58.715 39.130 0.00 0.00 39.74 3.49
5097 23776 4.935352 TGATGGGGCAACATATTTTAGC 57.065 40.909 0.00 0.00 39.74 3.09
5098 23777 7.053316 TCAATGATGGGGCAACATATTTTAG 57.947 36.000 0.00 0.00 39.74 1.85
5099 23778 7.429374 TTCAATGATGGGGCAACATATTTTA 57.571 32.000 0.00 0.00 39.74 1.52
5172 23887 4.432741 GCCCTTCACCTGGAGCCC 62.433 72.222 0.00 0.00 0.00 5.19
5181 23896 2.432174 AAAGAGCAGGGGCCCTTCAC 62.432 60.000 26.34 18.05 37.05 3.18
5182 23897 1.729267 AAAAGAGCAGGGGCCCTTCA 61.729 55.000 26.34 0.00 37.05 3.02
5183 23898 0.542938 AAAAAGAGCAGGGGCCCTTC 60.543 55.000 26.34 20.42 37.05 3.46
5184 23899 1.548784 AAAAAGAGCAGGGGCCCTT 59.451 52.632 26.34 12.72 40.10 3.95
5185 23900 3.276326 AAAAAGAGCAGGGGCCCT 58.724 55.556 22.67 22.67 42.56 5.19
5199 23914 7.439655 GGTGCACCAAATACATTCACTTAAAAA 59.560 33.333 31.23 0.00 35.64 1.94
5200 23915 6.926272 GGTGCACCAAATACATTCACTTAAAA 59.074 34.615 31.23 0.00 35.64 1.52
5201 23916 6.451393 GGTGCACCAAATACATTCACTTAAA 58.549 36.000 31.23 0.00 35.64 1.52
5202 23917 5.335269 CGGTGCACCAAATACATTCACTTAA 60.335 40.000 34.16 0.00 35.14 1.85
5203 23918 4.155099 CGGTGCACCAAATACATTCACTTA 59.845 41.667 34.16 0.00 35.14 2.24
5204 23919 3.057596 CGGTGCACCAAATACATTCACTT 60.058 43.478 34.16 0.00 35.14 3.16
5205 23920 2.487762 CGGTGCACCAAATACATTCACT 59.512 45.455 34.16 0.00 35.14 3.41
5206 23921 2.227865 ACGGTGCACCAAATACATTCAC 59.772 45.455 34.16 3.75 35.14 3.18
5207 23922 2.509569 ACGGTGCACCAAATACATTCA 58.490 42.857 34.16 0.00 35.14 2.57
5208 23923 4.597079 CATACGGTGCACCAAATACATTC 58.403 43.478 34.16 4.51 35.14 2.67
5209 23924 4.630894 CATACGGTGCACCAAATACATT 57.369 40.909 34.16 10.47 35.14 2.71
5230 23945 6.401955 AAACATTTTACAATGCAATACGGC 57.598 33.333 1.43 0.00 43.39 5.68
5265 23980 9.593134 TGTTGTCTTAATGTGCTAAATTGTTTT 57.407 25.926 0.00 0.00 0.00 2.43
5266 23981 9.762933 ATGTTGTCTTAATGTGCTAAATTGTTT 57.237 25.926 0.00 0.00 0.00 2.83
5267 23982 9.410556 GATGTTGTCTTAATGTGCTAAATTGTT 57.589 29.630 0.00 0.00 0.00 2.83
5268 23983 8.575589 TGATGTTGTCTTAATGTGCTAAATTGT 58.424 29.630 0.00 0.00 0.00 2.71
5269 23984 8.969121 TGATGTTGTCTTAATGTGCTAAATTG 57.031 30.769 0.00 0.00 0.00 2.32
5271 23986 9.577110 CATTGATGTTGTCTTAATGTGCTAAAT 57.423 29.630 0.00 0.00 0.00 1.40
5272 23987 8.575589 ACATTGATGTTGTCTTAATGTGCTAAA 58.424 29.630 0.00 0.00 39.65 1.85
5273 23988 8.109705 ACATTGATGTTGTCTTAATGTGCTAA 57.890 30.769 0.00 0.00 39.65 3.09
5274 23989 7.686438 ACATTGATGTTGTCTTAATGTGCTA 57.314 32.000 0.00 0.00 39.65 3.49
5275 23990 6.579666 ACATTGATGTTGTCTTAATGTGCT 57.420 33.333 0.00 0.00 39.65 4.40
5276 23991 7.970061 ACATACATTGATGTTGTCTTAATGTGC 59.030 33.333 10.22 0.00 40.83 4.57
5277 23992 9.844790 AACATACATTGATGTTGTCTTAATGTG 57.155 29.630 10.22 0.00 46.00 3.21


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.