Multiple sequence alignment - TraesCS6B01G047200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G047200 chr6B 100.000 2322 0 0 440 2761 27923920 27921599 0.000000e+00 4289.0
1 TraesCS6B01G047200 chr6B 88.172 1302 117 27 832 2125 28015936 28017208 0.000000e+00 1517.0
2 TraesCS6B01G047200 chr6B 100.000 339 0 0 1 339 27924359 27924021 6.490000e-176 627.0
3 TraesCS6B01G047200 chr6B 94.461 343 16 2 492 831 719404284 719404626 2.440000e-145 525.0
4 TraesCS6B01G047200 chr6B 93.846 325 17 3 3 327 2881191 2881512 1.150000e-133 486.0
5 TraesCS6B01G047200 chr6B 93.846 325 17 3 3 327 9640788 9640467 1.150000e-133 486.0
6 TraesCS6B01G047200 chr6B 93.846 325 17 3 3 327 35043902 35044223 1.150000e-133 486.0
7 TraesCS6B01G047200 chr6B 93.846 325 17 3 3 327 713093406 713093085 1.150000e-133 486.0
8 TraesCS6B01G047200 chr6D 92.387 1169 72 5 832 1996 16185739 16184584 0.000000e+00 1650.0
9 TraesCS6B01G047200 chr6D 96.875 64 2 0 2065 2128 16184585 16184522 1.050000e-19 108.0
10 TraesCS6B01G047200 chr6A 88.214 1120 97 11 832 1943 16449483 16448391 0.000000e+00 1304.0
11 TraesCS6B01G047200 chr1A 98.525 610 9 0 2152 2761 34926452 34925843 0.000000e+00 1077.0
12 TraesCS6B01G047200 chr7B 97.377 610 16 0 2152 2761 1701555 1700946 0.000000e+00 1038.0
13 TraesCS6B01G047200 chr7B 97.377 610 16 0 2152 2761 313381532 313380923 0.000000e+00 1038.0
14 TraesCS6B01G047200 chr7B 79.821 1006 159 24 979 1969 608405306 608406282 0.000000e+00 693.0
15 TraesCS6B01G047200 chr7B 82.890 789 115 10 979 1761 608415110 608415884 0.000000e+00 691.0
16 TraesCS6B01G047200 chr7B 78.942 1002 176 21 959 1948 608392265 608393243 0.000000e+00 649.0
17 TraesCS6B01G047200 chr7B 91.117 394 23 9 440 831 731384688 731385071 8.760000e-145 523.0
18 TraesCS6B01G047200 chr7A 97.377 610 16 0 2152 2761 734636464 734635855 0.000000e+00 1038.0
19 TraesCS6B01G047200 chr7A 81.098 783 132 11 979 1761 644710569 644711335 1.820000e-171 612.0
20 TraesCS6B01G047200 chr7A 88.693 398 28 13 441 832 87888481 87888867 1.160000e-128 470.0
21 TraesCS6B01G047200 chr7A 88.250 400 35 10 441 833 698885149 698884755 4.160000e-128 468.0
22 TraesCS6B01G047200 chr3B 97.213 610 17 0 2152 2761 59343343 59342734 0.000000e+00 1033.0
23 TraesCS6B01G047200 chr3B 97.213 610 17 0 2152 2761 781715738 781715129 0.000000e+00 1033.0
24 TraesCS6B01G047200 chr3B 97.213 610 17 0 2152 2761 782200854 782200245 0.000000e+00 1033.0
25 TraesCS6B01G047200 chr3B 87.970 399 39 8 440 833 66762246 66762640 1.940000e-126 462.0
26 TraesCS6B01G047200 chr1B 97.213 610 17 0 2152 2761 593227883 593228492 0.000000e+00 1033.0
27 TraesCS6B01G047200 chrUn 97.049 610 18 0 2152 2761 37951782 37952391 0.000000e+00 1027.0
28 TraesCS6B01G047200 chrUn 99.401 334 2 0 1 334 438826443 438826110 8.460000e-170 606.0
29 TraesCS6B01G047200 chrUn 94.752 343 14 3 492 831 47419656 47419997 5.240000e-147 531.0
30 TraesCS6B01G047200 chr2B 87.736 742 49 16 1265 2005 46590980 46590280 0.000000e+00 828.0
31 TraesCS6B01G047200 chr2B 93.373 332 19 3 3 334 750045495 750045823 3.200000e-134 488.0
32 TraesCS6B01G047200 chr7D 81.957 787 126 12 979 1761 560701938 560702712 0.000000e+00 652.0
33 TraesCS6B01G047200 chr7D 81.830 787 127 12 979 1761 560682973 560683747 0.000000e+00 647.0
34 TraesCS6B01G047200 chr7D 81.865 783 123 11 982 1761 560603149 560603915 2.320000e-180 641.0
35 TraesCS6B01G047200 chr7D 78.256 975 177 23 979 1940 560597249 560598201 6.580000e-166 593.0
36 TraesCS6B01G047200 chr4A 97.872 329 7 0 1 329 731440160 731440488 1.110000e-158 569.0
37 TraesCS6B01G047200 chr4A 93.846 325 17 3 3 327 713672007 713672328 1.150000e-133 486.0
38 TraesCS6B01G047200 chr4A 87.654 405 39 10 441 838 643928287 643928687 6.970000e-126 460.0
39 TraesCS6B01G047200 chr4A 92.105 38 3 0 1077 1114 456449898 456449861 1.000000e-03 54.7
40 TraesCS6B01G047200 chr5B 96.657 329 11 0 1 329 695940770 695941098 5.200000e-152 547.0
41 TraesCS6B01G047200 chr4B 88.293 410 33 12 440 838 669682048 669681643 6.920000e-131 477.0
42 TraesCS6B01G047200 chr4B 88.889 396 30 11 441 831 226072980 226072594 2.490000e-130 475.0
43 TraesCS6B01G047200 chr1D 86.567 67 7 2 1073 1138 35900455 35900390 3.810000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G047200 chr6B 27921599 27924359 2760 True 2458 4289 100.000 1 2761 2 chr6B.!!$R3 2760
1 TraesCS6B01G047200 chr6B 28015936 28017208 1272 False 1517 1517 88.172 832 2125 1 chr6B.!!$F2 1293
2 TraesCS6B01G047200 chr6D 16184522 16185739 1217 True 879 1650 94.631 832 2128 2 chr6D.!!$R1 1296
3 TraesCS6B01G047200 chr6A 16448391 16449483 1092 True 1304 1304 88.214 832 1943 1 chr6A.!!$R1 1111
4 TraesCS6B01G047200 chr1A 34925843 34926452 609 True 1077 1077 98.525 2152 2761 1 chr1A.!!$R1 609
5 TraesCS6B01G047200 chr7B 1700946 1701555 609 True 1038 1038 97.377 2152 2761 1 chr7B.!!$R1 609
6 TraesCS6B01G047200 chr7B 313380923 313381532 609 True 1038 1038 97.377 2152 2761 1 chr7B.!!$R2 609
7 TraesCS6B01G047200 chr7B 608405306 608406282 976 False 693 693 79.821 979 1969 1 chr7B.!!$F2 990
8 TraesCS6B01G047200 chr7B 608415110 608415884 774 False 691 691 82.890 979 1761 1 chr7B.!!$F3 782
9 TraesCS6B01G047200 chr7B 608392265 608393243 978 False 649 649 78.942 959 1948 1 chr7B.!!$F1 989
10 TraesCS6B01G047200 chr7A 734635855 734636464 609 True 1038 1038 97.377 2152 2761 1 chr7A.!!$R2 609
11 TraesCS6B01G047200 chr7A 644710569 644711335 766 False 612 612 81.098 979 1761 1 chr7A.!!$F2 782
12 TraesCS6B01G047200 chr3B 59342734 59343343 609 True 1033 1033 97.213 2152 2761 1 chr3B.!!$R1 609
13 TraesCS6B01G047200 chr3B 781715129 781715738 609 True 1033 1033 97.213 2152 2761 1 chr3B.!!$R2 609
14 TraesCS6B01G047200 chr3B 782200245 782200854 609 True 1033 1033 97.213 2152 2761 1 chr3B.!!$R3 609
15 TraesCS6B01G047200 chr1B 593227883 593228492 609 False 1033 1033 97.213 2152 2761 1 chr1B.!!$F1 609
16 TraesCS6B01G047200 chrUn 37951782 37952391 609 False 1027 1027 97.049 2152 2761 1 chrUn.!!$F1 609
17 TraesCS6B01G047200 chr2B 46590280 46590980 700 True 828 828 87.736 1265 2005 1 chr2B.!!$R1 740
18 TraesCS6B01G047200 chr7D 560701938 560702712 774 False 652 652 81.957 979 1761 1 chr7D.!!$F4 782
19 TraesCS6B01G047200 chr7D 560682973 560683747 774 False 647 647 81.830 979 1761 1 chr7D.!!$F3 782
20 TraesCS6B01G047200 chr7D 560603149 560603915 766 False 641 641 81.865 982 1761 1 chr7D.!!$F2 779
21 TraesCS6B01G047200 chr7D 560597249 560598201 952 False 593 593 78.256 979 1940 1 chr7D.!!$F1 961

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
138 139 0.093705 GCGCGTAGAAGCACTTCAAG 59.906 55.0 8.43 4.68 41.84 3.02 F
811 812 0.103572 GGCCTTACGAATCGGTGCTA 59.896 55.0 7.80 0.00 0.00 3.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1286 1314 0.178767 CGGACAGATGGATGCCAGAA 59.821 55.0 0.0 0.0 36.75 3.02 R
2140 2186 0.178990 GGTCCAAACTTGTCCAGGCT 60.179 55.0 0.0 0.0 0.00 4.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.877178 AAAACACTATTCACAATTTTTACACCA 57.123 25.926 0.00 0.00 0.00 4.17
45 46 7.761038 ACACCATTATCGATATCTAGTCACA 57.239 36.000 5.84 0.00 0.00 3.58
46 47 7.594714 ACACCATTATCGATATCTAGTCACAC 58.405 38.462 5.84 0.00 0.00 3.82
47 48 7.230712 ACACCATTATCGATATCTAGTCACACA 59.769 37.037 5.84 0.00 0.00 3.72
48 49 8.082242 CACCATTATCGATATCTAGTCACACAA 58.918 37.037 5.84 0.00 0.00 3.33
49 50 8.082852 ACCATTATCGATATCTAGTCACACAAC 58.917 37.037 5.84 0.00 0.00 3.32
50 51 8.300286 CCATTATCGATATCTAGTCACACAACT 58.700 37.037 5.84 0.00 0.00 3.16
56 57 9.333724 TCGATATCTAGTCACACAACTAATACA 57.666 33.333 0.34 0.00 31.56 2.29
57 58 9.946165 CGATATCTAGTCACACAACTAATACAA 57.054 33.333 0.34 0.00 31.56 2.41
61 62 8.251750 TCTAGTCACACAACTAATACAAATGC 57.748 34.615 0.00 0.00 31.56 3.56
62 63 6.875948 AGTCACACAACTAATACAAATGCA 57.124 33.333 0.00 0.00 0.00 3.96
63 64 7.452880 AGTCACACAACTAATACAAATGCAT 57.547 32.000 0.00 0.00 0.00 3.96
64 65 8.560355 AGTCACACAACTAATACAAATGCATA 57.440 30.769 0.00 0.00 0.00 3.14
65 66 9.177608 AGTCACACAACTAATACAAATGCATAT 57.822 29.630 0.00 0.00 0.00 1.78
66 67 9.787532 GTCACACAACTAATACAAATGCATATT 57.212 29.630 0.00 0.00 0.00 1.28
67 68 9.786105 TCACACAACTAATACAAATGCATATTG 57.214 29.630 15.58 15.58 0.00 1.90
68 69 9.786105 CACACAACTAATACAAATGCATATTGA 57.214 29.630 20.96 10.24 0.00 2.57
84 85 8.579850 TGCATATTGATCTCCTTTTTAACAGT 57.420 30.769 0.00 0.00 0.00 3.55
85 86 9.023962 TGCATATTGATCTCCTTTTTAACAGTT 57.976 29.630 0.00 0.00 0.00 3.16
86 87 9.508567 GCATATTGATCTCCTTTTTAACAGTTC 57.491 33.333 0.00 0.00 0.00 3.01
89 90 7.873719 TTGATCTCCTTTTTAACAGTTCACA 57.126 32.000 0.00 0.00 0.00 3.58
90 91 7.496529 TGATCTCCTTTTTAACAGTTCACAG 57.503 36.000 0.00 0.00 0.00 3.66
91 92 7.279615 TGATCTCCTTTTTAACAGTTCACAGA 58.720 34.615 0.00 0.00 0.00 3.41
92 93 7.442364 TGATCTCCTTTTTAACAGTTCACAGAG 59.558 37.037 0.00 0.00 0.00 3.35
93 94 6.055588 TCTCCTTTTTAACAGTTCACAGAGG 58.944 40.000 0.00 0.00 0.00 3.69
94 95 5.751586 TCCTTTTTAACAGTTCACAGAGGT 58.248 37.500 0.00 0.00 0.00 3.85
95 96 5.588648 TCCTTTTTAACAGTTCACAGAGGTG 59.411 40.000 0.00 0.00 46.66 4.00
96 97 4.893424 TTTTAACAGTTCACAGAGGTGC 57.107 40.909 0.00 0.00 44.87 5.01
97 98 2.148916 TAACAGTTCACAGAGGTGCG 57.851 50.000 0.00 0.00 44.87 5.34
98 99 0.532862 AACAGTTCACAGAGGTGCGG 60.533 55.000 0.00 0.00 44.87 5.69
99 100 1.069765 CAGTTCACAGAGGTGCGGT 59.930 57.895 0.00 0.00 44.87 5.68
100 101 0.317160 CAGTTCACAGAGGTGCGGTA 59.683 55.000 0.00 0.00 44.87 4.02
101 102 0.603569 AGTTCACAGAGGTGCGGTAG 59.396 55.000 0.00 0.00 44.87 3.18
102 103 0.601558 GTTCACAGAGGTGCGGTAGA 59.398 55.000 0.00 0.00 44.87 2.59
103 104 1.000506 GTTCACAGAGGTGCGGTAGAA 59.999 52.381 0.00 0.00 44.87 2.10
104 105 0.888619 TCACAGAGGTGCGGTAGAAG 59.111 55.000 0.00 0.00 44.87 2.85
105 106 0.737715 CACAGAGGTGCGGTAGAAGC 60.738 60.000 0.00 0.00 38.37 3.86
106 107 0.900647 ACAGAGGTGCGGTAGAAGCT 60.901 55.000 0.00 0.00 36.20 3.74
107 108 4.816990 GAGGTGCGGTAGAAGCTC 57.183 61.111 0.00 0.00 42.66 4.09
108 109 1.142097 GAGGTGCGGTAGAAGCTCC 59.858 63.158 0.00 1.53 43.19 4.70
109 110 3.300013 GGTGCGGTAGAAGCTCCT 58.700 61.111 0.00 0.00 42.91 3.69
110 111 2.501492 GGTGCGGTAGAAGCTCCTA 58.499 57.895 0.00 0.00 42.91 2.94
111 112 0.386113 GGTGCGGTAGAAGCTCCTAG 59.614 60.000 0.00 0.00 42.91 3.02
112 113 1.390565 GTGCGGTAGAAGCTCCTAGA 58.609 55.000 0.00 0.00 35.28 2.43
113 114 1.749634 GTGCGGTAGAAGCTCCTAGAA 59.250 52.381 0.00 0.00 35.28 2.10
114 115 2.165845 GTGCGGTAGAAGCTCCTAGAAA 59.834 50.000 0.00 0.00 35.28 2.52
115 116 2.165845 TGCGGTAGAAGCTCCTAGAAAC 59.834 50.000 0.00 0.00 35.28 2.78
116 117 2.795331 GCGGTAGAAGCTCCTAGAAACG 60.795 54.545 0.00 0.00 0.00 3.60
117 118 2.223525 CGGTAGAAGCTCCTAGAAACGG 60.224 54.545 0.00 0.00 0.00 4.44
118 119 3.022406 GGTAGAAGCTCCTAGAAACGGA 58.978 50.000 0.00 0.00 0.00 4.69
122 123 4.403976 CTCCTAGAAACGGAGCGC 57.596 61.111 0.00 0.00 41.39 5.92
123 124 1.586564 CTCCTAGAAACGGAGCGCG 60.587 63.158 0.00 0.00 41.39 6.86
124 125 2.181021 CCTAGAAACGGAGCGCGT 59.819 61.111 8.43 0.00 0.00 6.01
125 126 1.026182 TCCTAGAAACGGAGCGCGTA 61.026 55.000 8.43 0.00 0.00 4.42
126 127 0.591741 CCTAGAAACGGAGCGCGTAG 60.592 60.000 8.43 0.00 0.00 3.51
127 128 0.376152 CTAGAAACGGAGCGCGTAGA 59.624 55.000 8.43 0.00 0.00 2.59
128 129 0.804364 TAGAAACGGAGCGCGTAGAA 59.196 50.000 8.43 0.00 0.00 2.10
129 130 0.456312 AGAAACGGAGCGCGTAGAAG 60.456 55.000 8.43 0.00 0.00 2.85
130 131 2.010740 GAAACGGAGCGCGTAGAAGC 62.011 60.000 8.43 0.00 0.00 3.86
131 132 2.758770 AAACGGAGCGCGTAGAAGCA 62.759 55.000 8.43 0.00 36.85 3.91
132 133 3.248171 CGGAGCGCGTAGAAGCAC 61.248 66.667 8.43 0.00 36.85 4.40
133 134 2.182030 GGAGCGCGTAGAAGCACT 59.818 61.111 8.43 0.00 36.85 4.40
134 135 1.446272 GGAGCGCGTAGAAGCACTT 60.446 57.895 8.43 0.00 36.85 3.16
135 136 1.414527 GGAGCGCGTAGAAGCACTTC 61.415 60.000 8.43 2.04 39.78 3.01
136 137 0.732880 GAGCGCGTAGAAGCACTTCA 60.733 55.000 8.43 0.00 41.84 3.02
137 138 0.319555 AGCGCGTAGAAGCACTTCAA 60.320 50.000 8.43 0.00 41.84 2.69
138 139 0.093705 GCGCGTAGAAGCACTTCAAG 59.906 55.000 8.43 4.68 41.84 3.02
139 140 1.698165 CGCGTAGAAGCACTTCAAGA 58.302 50.000 12.65 0.00 41.84 3.02
140 141 1.651138 CGCGTAGAAGCACTTCAAGAG 59.349 52.381 12.65 2.09 41.84 2.85
141 142 1.996191 GCGTAGAAGCACTTCAAGAGG 59.004 52.381 12.65 4.73 41.84 3.69
142 143 2.352814 GCGTAGAAGCACTTCAAGAGGA 60.353 50.000 12.65 0.00 41.84 3.71
143 144 3.861131 GCGTAGAAGCACTTCAAGAGGAA 60.861 47.826 12.65 0.00 41.84 3.36
144 145 4.307432 CGTAGAAGCACTTCAAGAGGAAA 58.693 43.478 12.65 0.00 41.84 3.13
145 146 4.932200 CGTAGAAGCACTTCAAGAGGAAAT 59.068 41.667 12.65 0.00 41.84 2.17
146 147 6.100004 CGTAGAAGCACTTCAAGAGGAAATA 58.900 40.000 12.65 0.00 41.84 1.40
147 148 6.590292 CGTAGAAGCACTTCAAGAGGAAATAA 59.410 38.462 12.65 0.00 41.84 1.40
148 149 6.809630 AGAAGCACTTCAAGAGGAAATAAC 57.190 37.500 12.65 0.00 41.84 1.89
149 150 5.409826 AGAAGCACTTCAAGAGGAAATAACG 59.590 40.000 12.65 0.00 41.84 3.18
150 151 4.003648 AGCACTTCAAGAGGAAATAACGG 58.996 43.478 0.00 0.00 34.44 4.44
151 152 3.127030 GCACTTCAAGAGGAAATAACGGG 59.873 47.826 0.00 0.00 34.44 5.28
152 153 4.575885 CACTTCAAGAGGAAATAACGGGA 58.424 43.478 0.00 0.00 34.44 5.14
153 154 5.001232 CACTTCAAGAGGAAATAACGGGAA 58.999 41.667 0.00 0.00 34.44 3.97
154 155 5.648092 CACTTCAAGAGGAAATAACGGGAAT 59.352 40.000 0.00 0.00 34.44 3.01
155 156 6.151144 CACTTCAAGAGGAAATAACGGGAATT 59.849 38.462 0.00 0.00 34.44 2.17
156 157 6.719829 ACTTCAAGAGGAAATAACGGGAATTT 59.280 34.615 0.00 0.00 34.44 1.82
157 158 7.232737 ACTTCAAGAGGAAATAACGGGAATTTT 59.767 33.333 0.00 0.00 34.44 1.82
158 159 6.919721 TCAAGAGGAAATAACGGGAATTTTG 58.080 36.000 0.00 0.00 0.00 2.44
159 160 5.324784 AGAGGAAATAACGGGAATTTTGC 57.675 39.130 0.00 0.00 0.00 3.68
160 161 5.016831 AGAGGAAATAACGGGAATTTTGCT 58.983 37.500 0.00 0.00 33.25 3.91
161 162 5.125578 AGAGGAAATAACGGGAATTTTGCTC 59.874 40.000 7.43 7.43 43.01 4.26
162 163 4.102649 GGAAATAACGGGAATTTTGCTCG 58.897 43.478 0.00 0.00 0.00 5.03
163 164 4.142556 GGAAATAACGGGAATTTTGCTCGA 60.143 41.667 0.00 0.00 0.00 4.04
164 165 4.351131 AATAACGGGAATTTTGCTCGAC 57.649 40.909 0.00 0.00 0.00 4.20
165 166 0.879090 AACGGGAATTTTGCTCGACC 59.121 50.000 0.00 0.00 0.00 4.79
166 167 0.250553 ACGGGAATTTTGCTCGACCA 60.251 50.000 0.00 0.00 0.00 4.02
167 168 0.447801 CGGGAATTTTGCTCGACCAG 59.552 55.000 0.00 0.00 0.00 4.00
168 169 0.811281 GGGAATTTTGCTCGACCAGG 59.189 55.000 0.00 0.00 0.00 4.45
169 170 1.534729 GGAATTTTGCTCGACCAGGT 58.465 50.000 0.00 0.00 0.00 4.00
170 171 1.468914 GGAATTTTGCTCGACCAGGTC 59.531 52.381 9.92 9.92 0.00 3.85
171 172 2.151202 GAATTTTGCTCGACCAGGTCA 58.849 47.619 20.13 6.03 32.09 4.02
172 173 2.496899 ATTTTGCTCGACCAGGTCAT 57.503 45.000 20.13 0.35 32.09 3.06
173 174 3.627395 ATTTTGCTCGACCAGGTCATA 57.373 42.857 20.13 5.95 32.09 2.15
174 175 3.410631 TTTTGCTCGACCAGGTCATAA 57.589 42.857 20.13 5.66 32.09 1.90
175 176 3.410631 TTTGCTCGACCAGGTCATAAA 57.589 42.857 20.13 11.02 32.09 1.40
176 177 3.627395 TTGCTCGACCAGGTCATAAAT 57.373 42.857 20.13 0.00 32.09 1.40
177 178 3.179443 TGCTCGACCAGGTCATAAATC 57.821 47.619 20.13 2.82 32.09 2.17
178 179 2.158957 TGCTCGACCAGGTCATAAATCC 60.159 50.000 20.13 1.05 32.09 3.01
179 180 2.743938 CTCGACCAGGTCATAAATCCG 58.256 52.381 20.13 3.54 32.09 4.18
180 181 2.361119 CTCGACCAGGTCATAAATCCGA 59.639 50.000 20.13 7.90 32.09 4.55
181 182 2.761767 TCGACCAGGTCATAAATCCGAA 59.238 45.455 20.13 0.00 32.09 4.30
182 183 3.123804 CGACCAGGTCATAAATCCGAAG 58.876 50.000 20.13 0.00 32.09 3.79
183 184 3.467803 GACCAGGTCATAAATCCGAAGG 58.532 50.000 15.43 0.00 40.27 3.46
184 185 3.744530 GACCAGGTCATAAATCCGAAGGG 60.745 52.174 15.43 0.00 39.65 3.95
185 186 5.963904 GACCAGGTCATAAATCCGAAGGGA 61.964 50.000 15.43 0.00 39.65 4.20
186 187 7.703945 GACCAGGTCATAAATCCGAAGGGAG 62.704 52.000 15.43 0.00 39.65 4.30
200 201 5.056894 CGAAGGGAGAATACTATTACCCG 57.943 47.826 13.53 0.00 41.81 5.28
201 202 4.617762 CGAAGGGAGAATACTATTACCCGC 60.618 50.000 13.53 10.60 41.81 6.13
202 203 4.129317 AGGGAGAATACTATTACCCGCT 57.871 45.455 13.53 4.32 41.81 5.52
203 204 5.266709 AGGGAGAATACTATTACCCGCTA 57.733 43.478 13.53 0.00 41.81 4.26
204 205 5.015515 AGGGAGAATACTATTACCCGCTAC 58.984 45.833 13.53 0.00 41.81 3.58
205 206 4.159321 GGGAGAATACTATTACCCGCTACC 59.841 50.000 7.41 0.00 0.00 3.18
206 207 4.142513 GGAGAATACTATTACCCGCTACCG 60.143 50.000 0.00 0.00 0.00 4.02
207 208 3.192212 AGAATACTATTACCCGCTACCGC 59.808 47.826 0.00 0.00 0.00 5.68
208 209 1.247567 TACTATTACCCGCTACCGCC 58.752 55.000 0.00 0.00 0.00 6.13
209 210 0.468771 ACTATTACCCGCTACCGCCT 60.469 55.000 0.00 0.00 0.00 5.52
210 211 0.243095 CTATTACCCGCTACCGCCTC 59.757 60.000 0.00 0.00 0.00 4.70
211 212 1.181098 TATTACCCGCTACCGCCTCC 61.181 60.000 0.00 0.00 0.00 4.30
212 213 3.829927 TATTACCCGCTACCGCCTCCA 62.830 57.143 0.00 0.00 0.00 3.86
213 214 3.744003 TACCCGCTACCGCCTCCAT 62.744 63.158 0.00 0.00 0.00 3.41
214 215 4.301027 CCCGCTACCGCCTCCATC 62.301 72.222 0.00 0.00 0.00 3.51
215 216 4.647615 CCGCTACCGCCTCCATCG 62.648 72.222 0.00 0.00 0.00 3.84
216 217 3.900892 CGCTACCGCCTCCATCGT 61.901 66.667 0.00 0.00 0.00 3.73
217 218 2.279517 GCTACCGCCTCCATCGTG 60.280 66.667 0.00 0.00 0.00 4.35
218 219 2.279517 CTACCGCCTCCATCGTGC 60.280 66.667 0.00 0.00 0.00 5.34
219 220 2.758327 TACCGCCTCCATCGTGCT 60.758 61.111 0.00 0.00 0.00 4.40
220 221 2.685387 CTACCGCCTCCATCGTGCTC 62.685 65.000 0.00 0.00 0.00 4.26
221 222 4.899239 CCGCCTCCATCGTGCTCC 62.899 72.222 0.00 0.00 0.00 4.70
238 239 2.106844 CCGAAGGCACCAATTAGGC 58.893 57.895 0.00 0.00 46.14 3.93
239 240 0.394352 CCGAAGGCACCAATTAGGCT 60.394 55.000 0.00 0.00 46.14 4.58
240 241 1.134220 CCGAAGGCACCAATTAGGCTA 60.134 52.381 0.00 0.00 46.14 3.93
241 242 2.639065 CGAAGGCACCAATTAGGCTAA 58.361 47.619 9.79 9.79 43.14 3.09
242 243 3.214328 CGAAGGCACCAATTAGGCTAAT 58.786 45.455 13.96 13.96 43.14 1.73
243 244 4.385825 CGAAGGCACCAATTAGGCTAATA 58.614 43.478 19.53 0.00 43.14 0.98
244 245 4.213482 CGAAGGCACCAATTAGGCTAATAC 59.787 45.833 19.53 7.65 43.14 1.89
245 246 4.100279 AGGCACCAATTAGGCTAATACC 57.900 45.455 19.53 14.97 43.14 2.73
246 247 3.461831 AGGCACCAATTAGGCTAATACCA 59.538 43.478 19.53 0.00 43.14 3.25
247 248 3.568430 GGCACCAATTAGGCTAATACCAC 59.432 47.826 19.53 8.90 43.14 4.16
248 249 4.461198 GCACCAATTAGGCTAATACCACT 58.539 43.478 19.53 1.45 43.14 4.00
249 250 4.275936 GCACCAATTAGGCTAATACCACTG 59.724 45.833 19.53 13.25 43.14 3.66
250 251 4.821805 CACCAATTAGGCTAATACCACTGG 59.178 45.833 23.85 23.85 43.14 4.00
251 252 3.821033 CCAATTAGGCTAATACCACTGGC 59.179 47.826 19.53 0.00 0.00 4.85
252 253 4.446311 CCAATTAGGCTAATACCACTGGCT 60.446 45.833 19.53 0.00 38.79 4.75
253 254 4.625607 ATTAGGCTAATACCACTGGCTC 57.374 45.455 17.92 0.00 36.69 4.70
254 255 1.132500 AGGCTAATACCACTGGCTCC 58.868 55.000 0.00 0.00 0.00 4.70
255 256 0.249911 GGCTAATACCACTGGCTCCG 60.250 60.000 0.00 0.00 0.00 4.63
256 257 0.750850 GCTAATACCACTGGCTCCGA 59.249 55.000 0.00 0.00 0.00 4.55
257 258 1.138266 GCTAATACCACTGGCTCCGAA 59.862 52.381 0.00 0.00 0.00 4.30
258 259 2.803492 GCTAATACCACTGGCTCCGAAG 60.803 54.545 0.00 0.00 0.00 3.79
275 276 4.137849 CGAAGGCAACATGCATATGTAG 57.862 45.455 0.00 0.00 46.54 2.74
276 277 3.058708 CGAAGGCAACATGCATATGTAGG 60.059 47.826 0.00 3.80 46.54 3.18
277 278 3.862877 AGGCAACATGCATATGTAGGA 57.137 42.857 12.50 0.00 46.54 2.94
278 279 3.748083 AGGCAACATGCATATGTAGGAG 58.252 45.455 12.50 5.55 46.54 3.69
279 280 3.392285 AGGCAACATGCATATGTAGGAGA 59.608 43.478 12.50 0.00 46.54 3.71
280 281 4.136796 GGCAACATGCATATGTAGGAGAA 58.863 43.478 12.50 0.00 46.54 2.87
281 282 4.580167 GGCAACATGCATATGTAGGAGAAA 59.420 41.667 12.50 0.00 46.54 2.52
282 283 5.242393 GGCAACATGCATATGTAGGAGAAAT 59.758 40.000 12.50 0.00 46.54 2.17
283 284 6.239120 GGCAACATGCATATGTAGGAGAAATT 60.239 38.462 12.50 0.00 46.54 1.82
284 285 6.639686 GCAACATGCATATGTAGGAGAAATTG 59.360 38.462 12.50 6.87 46.54 2.32
285 286 7.682741 GCAACATGCATATGTAGGAGAAATTGT 60.683 37.037 12.50 0.00 46.54 2.71
286 287 8.839343 CAACATGCATATGTAGGAGAAATTGTA 58.161 33.333 12.50 0.00 46.54 2.41
287 288 9.578576 AACATGCATATGTAGGAGAAATTGTAT 57.421 29.630 12.50 0.00 46.54 2.29
532 533 4.398549 GTGCATAACGTGTACAATGTGT 57.601 40.909 0.00 0.00 42.30 3.72
533 534 5.518529 GTGCATAACGTGTACAATGTGTA 57.481 39.130 0.00 0.00 42.30 2.90
534 535 5.547341 GTGCATAACGTGTACAATGTGTAG 58.453 41.667 0.00 0.00 42.30 2.74
535 536 5.119588 GTGCATAACGTGTACAATGTGTAGT 59.880 40.000 0.00 0.00 42.30 2.73
536 537 6.308524 GTGCATAACGTGTACAATGTGTAGTA 59.691 38.462 0.00 0.00 42.30 1.82
537 538 7.009815 GTGCATAACGTGTACAATGTGTAGTAT 59.990 37.037 0.00 0.00 42.30 2.12
538 539 7.221259 TGCATAACGTGTACAATGTGTAGTATC 59.779 37.037 0.00 0.00 32.84 2.24
539 540 7.564538 GCATAACGTGTACAATGTGTAGTATCG 60.565 40.741 0.00 0.00 32.84 2.92
540 541 5.300969 ACGTGTACAATGTGTAGTATCGT 57.699 39.130 0.00 0.00 32.84 3.73
541 542 6.421377 ACGTGTACAATGTGTAGTATCGTA 57.579 37.500 0.00 0.00 32.84 3.43
542 543 6.841119 ACGTGTACAATGTGTAGTATCGTAA 58.159 36.000 0.00 0.00 32.84 3.18
543 544 7.304735 ACGTGTACAATGTGTAGTATCGTAAA 58.695 34.615 0.00 0.00 32.84 2.01
544 545 7.807433 ACGTGTACAATGTGTAGTATCGTAAAA 59.193 33.333 0.00 0.00 32.84 1.52
545 546 8.800972 CGTGTACAATGTGTAGTATCGTAAAAT 58.199 33.333 0.00 0.00 32.84 1.82
550 551 9.309516 ACAATGTGTAGTATCGTAAAATACCAG 57.690 33.333 0.00 0.00 33.42 4.00
551 552 7.941795 ATGTGTAGTATCGTAAAATACCAGC 57.058 36.000 0.00 0.00 33.42 4.85
552 553 6.865411 TGTGTAGTATCGTAAAATACCAGCA 58.135 36.000 0.00 0.00 33.42 4.41
553 554 7.321908 TGTGTAGTATCGTAAAATACCAGCAA 58.678 34.615 0.00 0.00 33.42 3.91
554 555 7.818446 TGTGTAGTATCGTAAAATACCAGCAAA 59.182 33.333 0.00 0.00 33.42 3.68
555 556 8.112449 GTGTAGTATCGTAAAATACCAGCAAAC 58.888 37.037 0.00 0.00 33.42 2.93
556 557 6.340537 AGTATCGTAAAATACCAGCAAACG 57.659 37.500 0.00 0.00 33.42 3.60
557 558 6.101332 AGTATCGTAAAATACCAGCAAACGA 58.899 36.000 0.00 0.00 41.45 3.85
558 559 5.866335 ATCGTAAAATACCAGCAAACGAA 57.134 34.783 0.00 0.00 40.71 3.85
559 560 5.670149 TCGTAAAATACCAGCAAACGAAA 57.330 34.783 0.00 0.00 35.23 3.46
560 561 6.057627 TCGTAAAATACCAGCAAACGAAAA 57.942 33.333 0.00 0.00 35.23 2.29
561 562 6.493116 TCGTAAAATACCAGCAAACGAAAAA 58.507 32.000 0.00 0.00 35.23 1.94
562 563 6.633634 TCGTAAAATACCAGCAAACGAAAAAG 59.366 34.615 0.00 0.00 35.23 2.27
563 564 6.633634 CGTAAAATACCAGCAAACGAAAAAGA 59.366 34.615 0.00 0.00 0.00 2.52
564 565 7.166142 CGTAAAATACCAGCAAACGAAAAAGAA 59.834 33.333 0.00 0.00 0.00 2.52
565 566 8.974408 GTAAAATACCAGCAAACGAAAAAGAAT 58.026 29.630 0.00 0.00 0.00 2.40
566 567 8.432110 AAAATACCAGCAAACGAAAAAGAATT 57.568 26.923 0.00 0.00 0.00 2.17
567 568 9.535878 AAAATACCAGCAAACGAAAAAGAATTA 57.464 25.926 0.00 0.00 0.00 1.40
568 569 9.535878 AAATACCAGCAAACGAAAAAGAATTAA 57.464 25.926 0.00 0.00 0.00 1.40
569 570 9.535878 AATACCAGCAAACGAAAAAGAATTAAA 57.464 25.926 0.00 0.00 0.00 1.52
570 571 9.705290 ATACCAGCAAACGAAAAAGAATTAAAT 57.295 25.926 0.00 0.00 0.00 1.40
571 572 8.432110 ACCAGCAAACGAAAAAGAATTAAATT 57.568 26.923 0.00 0.00 0.00 1.82
572 573 8.334632 ACCAGCAAACGAAAAAGAATTAAATTG 58.665 29.630 0.00 0.00 0.00 2.32
573 574 8.547069 CCAGCAAACGAAAAAGAATTAAATTGA 58.453 29.630 0.00 0.00 0.00 2.57
632 633 9.767228 AATAAAAACCCACAAACATTTAGTACC 57.233 29.630 0.00 0.00 0.00 3.34
633 634 5.441709 AAACCCACAAACATTTAGTACCG 57.558 39.130 0.00 0.00 0.00 4.02
634 635 3.414269 ACCCACAAACATTTAGTACCGG 58.586 45.455 0.00 0.00 0.00 5.28
635 636 3.181441 ACCCACAAACATTTAGTACCGGT 60.181 43.478 13.98 13.98 0.00 5.28
636 637 3.822167 CCCACAAACATTTAGTACCGGTT 59.178 43.478 15.04 0.00 0.00 4.44
637 638 4.320641 CCCACAAACATTTAGTACCGGTTG 60.321 45.833 15.04 6.22 0.00 3.77
638 639 4.320641 CCACAAACATTTAGTACCGGTTGG 60.321 45.833 15.04 5.40 42.84 3.77
662 663 0.325933 ACCAACCGGTACTAAAGGGC 59.674 55.000 8.00 0.00 46.71 5.19
663 664 0.616891 CCAACCGGTACTAAAGGGCT 59.383 55.000 8.00 0.00 0.00 5.19
664 665 1.406477 CCAACCGGTACTAAAGGGCTC 60.406 57.143 8.00 0.00 0.00 4.70
665 666 0.907486 AACCGGTACTAAAGGGCTCC 59.093 55.000 8.00 0.00 0.00 4.70
666 667 0.979709 ACCGGTACTAAAGGGCTCCC 60.980 60.000 4.49 0.00 0.00 4.30
667 668 1.440476 CGGTACTAAAGGGCTCCCG 59.560 63.158 0.00 0.00 41.95 5.14
668 669 1.828081 GGTACTAAAGGGCTCCCGG 59.172 63.158 0.00 0.00 41.95 5.73
669 670 1.145598 GTACTAAAGGGCTCCCGGC 59.854 63.158 0.00 0.00 41.95 6.13
687 688 4.760047 CCCCGGAACTGCCTCGTG 62.760 72.222 0.73 0.00 0.00 4.35
690 691 4.680237 CGGAACTGCCTCGTGCCA 62.680 66.667 0.00 0.00 40.16 4.92
691 692 3.050275 GGAACTGCCTCGTGCCAC 61.050 66.667 0.00 0.00 40.16 5.01
692 693 3.414700 GAACTGCCTCGTGCCACG 61.415 66.667 11.80 11.80 44.19 4.94
693 694 4.235762 AACTGCCTCGTGCCACGT 62.236 61.111 17.83 0.00 43.14 4.49
694 695 4.969196 ACTGCCTCGTGCCACGTG 62.969 66.667 17.83 14.77 43.14 4.49
698 699 3.345808 CCTCGTGCCACGTGGTTG 61.346 66.667 33.92 23.28 46.59 3.77
699 700 3.345808 CTCGTGCCACGTGGTTGG 61.346 66.667 33.92 22.42 43.14 3.77
705 706 4.484987 CCACGTGGTTGGCCTTTA 57.515 55.556 26.95 0.00 35.27 1.85
706 707 2.253513 CCACGTGGTTGGCCTTTAG 58.746 57.895 26.95 0.00 35.27 1.85
707 708 1.579429 CACGTGGTTGGCCTTTAGC 59.421 57.895 7.95 0.00 42.60 3.09
708 709 1.149627 ACGTGGTTGGCCTTTAGCA 59.850 52.632 3.32 2.28 46.50 3.49
709 710 1.170290 ACGTGGTTGGCCTTTAGCAC 61.170 55.000 19.01 19.01 46.50 4.40
710 711 1.862602 CGTGGTTGGCCTTTAGCACC 61.863 60.000 21.37 11.70 46.50 5.01
711 712 1.602323 TGGTTGGCCTTTAGCACCG 60.602 57.895 3.32 0.00 46.50 4.94
712 713 1.302993 GGTTGGCCTTTAGCACCGA 60.303 57.895 3.32 0.00 46.50 4.69
713 714 0.679960 GGTTGGCCTTTAGCACCGAT 60.680 55.000 3.32 0.00 46.50 4.18
714 715 1.173913 GTTGGCCTTTAGCACCGATT 58.826 50.000 3.32 0.00 46.50 3.34
715 716 1.132453 GTTGGCCTTTAGCACCGATTC 59.868 52.381 3.32 0.00 46.50 2.52
716 717 0.742990 TGGCCTTTAGCACCGATTCG 60.743 55.000 3.32 0.00 46.50 3.34
717 718 0.743345 GGCCTTTAGCACCGATTCGT 60.743 55.000 5.20 0.00 46.50 3.85
718 719 0.373716 GCCTTTAGCACCGATTCGTG 59.626 55.000 5.20 4.99 42.97 4.35
725 726 1.787847 CACCGATTCGTGCTGAACC 59.212 57.895 5.20 0.00 40.00 3.62
726 727 1.736645 ACCGATTCGTGCTGAACCG 60.737 57.895 5.20 0.00 43.58 4.44
727 728 3.081133 CGATTCGTGCTGAACCGG 58.919 61.111 0.00 0.00 40.08 5.28
728 729 1.736645 CGATTCGTGCTGAACCGGT 60.737 57.895 0.00 0.00 40.08 5.28
729 730 0.457166 CGATTCGTGCTGAACCGGTA 60.457 55.000 8.00 0.00 40.08 4.02
730 731 0.997196 GATTCGTGCTGAACCGGTAC 59.003 55.000 8.00 0.00 40.00 3.34
731 732 0.606604 ATTCGTGCTGAACCGGTACT 59.393 50.000 8.00 0.00 40.00 2.73
732 733 1.246649 TTCGTGCTGAACCGGTACTA 58.753 50.000 8.00 0.00 0.00 1.82
733 734 1.246649 TCGTGCTGAACCGGTACTAA 58.753 50.000 8.00 0.00 0.00 2.24
734 735 1.612950 TCGTGCTGAACCGGTACTAAA 59.387 47.619 8.00 0.00 0.00 1.85
735 736 1.990563 CGTGCTGAACCGGTACTAAAG 59.009 52.381 8.00 2.29 0.00 1.85
736 737 2.344025 GTGCTGAACCGGTACTAAAGG 58.656 52.381 8.00 0.00 0.00 3.11
737 738 1.276989 TGCTGAACCGGTACTAAAGGG 59.723 52.381 8.00 0.00 0.00 3.95
738 739 1.406477 GCTGAACCGGTACTAAAGGGG 60.406 57.143 8.00 0.00 0.00 4.79
739 740 1.208776 CTGAACCGGTACTAAAGGGGG 59.791 57.143 8.00 0.00 0.00 5.40
758 759 4.736739 GGGGGCTTTAGTGACCAC 57.263 61.111 0.00 0.00 0.00 4.16
759 760 1.765074 GGGGGCTTTAGTGACCACA 59.235 57.895 2.78 0.00 0.00 4.17
760 761 0.608308 GGGGGCTTTAGTGACCACAC 60.608 60.000 2.78 0.00 46.24 3.82
777 778 0.591170 CACTTTAGTGCGGGTTGTGG 59.409 55.000 0.00 0.00 39.39 4.17
778 779 0.470766 ACTTTAGTGCGGGTTGTGGA 59.529 50.000 0.00 0.00 0.00 4.02
779 780 1.134037 ACTTTAGTGCGGGTTGTGGAA 60.134 47.619 0.00 0.00 0.00 3.53
780 781 1.265905 CTTTAGTGCGGGTTGTGGAAC 59.734 52.381 0.00 0.00 37.35 3.62
789 790 2.837532 GGTTGTGGAACCGGTACTAA 57.162 50.000 8.00 1.56 42.47 2.24
790 791 3.124578 GGTTGTGGAACCGGTACTAAA 57.875 47.619 8.00 0.31 42.47 1.85
791 792 3.069289 GGTTGTGGAACCGGTACTAAAG 58.931 50.000 8.00 0.00 42.47 1.85
792 793 3.069289 GTTGTGGAACCGGTACTAAAGG 58.931 50.000 8.00 0.00 34.36 3.11
793 794 1.624813 TGTGGAACCGGTACTAAAGGG 59.375 52.381 8.00 0.00 34.36 3.95
794 795 0.614812 TGGAACCGGTACTAAAGGGC 59.385 55.000 8.00 0.00 0.00 5.19
795 796 0.107508 GGAACCGGTACTAAAGGGCC 60.108 60.000 8.00 0.00 0.00 5.80
796 797 0.907486 GAACCGGTACTAAAGGGCCT 59.093 55.000 8.00 0.00 0.00 5.19
797 798 1.280133 GAACCGGTACTAAAGGGCCTT 59.720 52.381 14.48 14.48 0.00 4.35
798 799 2.252535 ACCGGTACTAAAGGGCCTTA 57.747 50.000 21.25 0.00 0.00 2.69
799 800 1.833630 ACCGGTACTAAAGGGCCTTAC 59.166 52.381 21.25 13.83 0.00 2.34
800 801 1.202452 CCGGTACTAAAGGGCCTTACG 60.202 57.143 21.25 15.66 0.00 3.18
801 802 1.750778 CGGTACTAAAGGGCCTTACGA 59.249 52.381 21.25 7.25 0.00 3.43
802 803 2.166254 CGGTACTAAAGGGCCTTACGAA 59.834 50.000 21.25 3.05 0.00 3.85
803 804 3.181472 CGGTACTAAAGGGCCTTACGAAT 60.181 47.826 21.25 5.86 0.00 3.34
804 805 4.375272 GGTACTAAAGGGCCTTACGAATC 58.625 47.826 21.25 8.76 0.00 2.52
805 806 3.175109 ACTAAAGGGCCTTACGAATCG 57.825 47.619 21.25 0.00 0.00 3.34
806 807 2.159000 ACTAAAGGGCCTTACGAATCGG 60.159 50.000 21.25 6.24 0.00 4.18
807 808 0.616891 AAAGGGCCTTACGAATCGGT 59.383 50.000 21.25 0.00 0.00 4.69
808 809 0.107848 AAGGGCCTTACGAATCGGTG 60.108 55.000 19.37 0.00 0.00 4.94
809 810 2.178235 GGGCCTTACGAATCGGTGC 61.178 63.158 7.80 3.57 0.00 5.01
810 811 1.153429 GGCCTTACGAATCGGTGCT 60.153 57.895 7.80 0.00 0.00 4.40
811 812 0.103572 GGCCTTACGAATCGGTGCTA 59.896 55.000 7.80 0.00 0.00 3.49
812 813 1.270147 GGCCTTACGAATCGGTGCTAT 60.270 52.381 7.80 0.00 0.00 2.97
813 814 2.480845 GCCTTACGAATCGGTGCTATT 58.519 47.619 7.80 0.00 0.00 1.73
814 815 2.221055 GCCTTACGAATCGGTGCTATTG 59.779 50.000 7.80 0.00 0.00 1.90
815 816 2.221055 CCTTACGAATCGGTGCTATTGC 59.779 50.000 7.80 0.00 40.20 3.56
816 817 1.860676 TACGAATCGGTGCTATTGCC 58.139 50.000 7.80 0.00 38.71 4.52
817 818 0.814010 ACGAATCGGTGCTATTGCCC 60.814 55.000 7.80 0.00 38.71 5.36
818 819 1.831389 CGAATCGGTGCTATTGCCCG 61.831 60.000 17.97 17.97 46.73 6.13
819 820 1.507141 GAATCGGTGCTATTGCCCGG 61.507 60.000 21.56 0.00 45.99 5.73
820 821 2.265467 AATCGGTGCTATTGCCCGGT 62.265 55.000 21.56 15.64 45.99 5.28
821 822 2.265467 ATCGGTGCTATTGCCCGGTT 62.265 55.000 21.56 11.69 45.99 4.44
822 823 1.153329 CGGTGCTATTGCCCGGTTA 60.153 57.895 16.86 0.00 43.94 2.85
823 824 1.433837 CGGTGCTATTGCCCGGTTAC 61.434 60.000 16.86 0.07 43.94 2.50
824 825 0.393267 GGTGCTATTGCCCGGTTACA 60.393 55.000 0.00 0.00 38.71 2.41
825 826 0.730840 GTGCTATTGCCCGGTTACAC 59.269 55.000 0.00 0.00 38.71 2.90
826 827 0.616371 TGCTATTGCCCGGTTACACT 59.384 50.000 0.00 0.00 38.71 3.55
827 828 1.832366 TGCTATTGCCCGGTTACACTA 59.168 47.619 0.00 0.00 38.71 2.74
828 829 2.159014 TGCTATTGCCCGGTTACACTAG 60.159 50.000 0.00 5.15 38.71 2.57
829 830 2.159000 GCTATTGCCCGGTTACACTAGT 60.159 50.000 0.00 0.00 0.00 2.57
830 831 2.396590 ATTGCCCGGTTACACTAGTG 57.603 50.000 21.44 21.44 0.00 2.74
891 892 6.126863 ACCTCCATTGTTGTTTAGAGATCA 57.873 37.500 0.00 0.00 0.00 2.92
915 924 0.824595 TCAAGCAGCACAGCAACCAT 60.825 50.000 0.00 0.00 36.85 3.55
933 942 2.892852 CCATTTCCCAAAGCTTGACAGA 59.107 45.455 0.00 0.00 0.00 3.41
935 944 2.276732 TTCCCAAAGCTTGACAGAGG 57.723 50.000 0.00 0.00 0.00 3.69
946 955 1.374758 GACAGAGGGCACGTTCCTG 60.375 63.158 11.55 1.38 34.21 3.86
1192 1219 3.374678 AGTTAACCGATCACTCGTCTCTC 59.625 47.826 0.88 0.00 43.49 3.20
1286 1314 0.966920 TCGCCGAGGACTTCTTCTTT 59.033 50.000 0.00 0.00 0.00 2.52
1293 1321 3.744660 GAGGACTTCTTCTTTTCTGGCA 58.255 45.455 0.00 0.00 0.00 4.92
1302 1330 3.726557 TCTTTTCTGGCATCCATCTGT 57.273 42.857 0.00 0.00 30.82 3.41
1388 1416 2.092212 CCTTAACACCATGGGCATCTCT 60.092 50.000 18.09 0.00 0.00 3.10
1389 1417 2.715749 TAACACCATGGGCATCTCTG 57.284 50.000 18.09 5.66 0.00 3.35
1435 1463 1.298014 GCCTCAACCCTCCTCACAG 59.702 63.158 0.00 0.00 0.00 3.66
1511 1539 1.080705 CGTCACCTCGAACCCTGAC 60.081 63.158 0.00 0.00 0.00 3.51
1514 1542 1.002087 GTCACCTCGAACCCTGACAAT 59.998 52.381 6.57 0.00 34.38 2.71
1663 1691 0.389426 GTGATCACGGTAGCCAACGT 60.389 55.000 10.69 0.00 45.25 3.99
1703 1731 4.936411 CCTGCCATCTCAGATGATGTTATC 59.064 45.833 16.90 0.00 41.47 1.75
1733 1761 2.103153 TCCAGGTGGAGAAGAACACT 57.897 50.000 0.00 0.00 39.78 3.55
1745 1773 6.013379 TGGAGAAGAACACTGTAGATTGGATT 60.013 38.462 0.00 0.00 0.00 3.01
1911 1956 6.177610 TCCTCATGTGTATGTCTTTTTACCC 58.822 40.000 0.00 0.00 35.73 3.69
1917 1962 8.902806 CATGTGTATGTCTTTTTACCCATGTAT 58.097 33.333 0.00 0.00 32.75 2.29
2013 2059 6.361768 TTTCCTTTGTTTGGTTTGGTACTT 57.638 33.333 0.00 0.00 0.00 2.24
2015 2061 5.265989 TCCTTTGTTTGGTTTGGTACTTCT 58.734 37.500 0.00 0.00 0.00 2.85
2021 2067 8.749026 TTGTTTGGTTTGGTACTTCTTATGTA 57.251 30.769 0.00 0.00 0.00 2.29
2025 2071 8.983702 TTGGTTTGGTACTTCTTATGTAAACT 57.016 30.769 0.00 0.00 0.00 2.66
2038 2084 8.767478 TCTTATGTAAACTAATATAAGGCCGC 57.233 34.615 0.00 0.00 35.10 6.53
2039 2085 8.591072 TCTTATGTAAACTAATATAAGGCCGCT 58.409 33.333 0.00 0.00 35.10 5.52
2040 2086 9.216117 CTTATGTAAACTAATATAAGGCCGCTT 57.784 33.333 0.00 0.00 32.27 4.68
2042 2088 8.773404 ATGTAAACTAATATAAGGCCGCTTAG 57.227 34.615 0.00 4.35 0.00 2.18
2043 2089 7.954835 TGTAAACTAATATAAGGCCGCTTAGA 58.045 34.615 15.20 1.73 0.00 2.10
2044 2090 8.591072 TGTAAACTAATATAAGGCCGCTTAGAT 58.409 33.333 15.20 3.73 0.00 1.98
2045 2091 9.085250 GTAAACTAATATAAGGCCGCTTAGATC 57.915 37.037 15.20 0.00 0.00 2.75
2046 2092 6.852420 ACTAATATAAGGCCGCTTAGATCA 57.148 37.500 15.20 0.00 0.00 2.92
2047 2093 6.631962 ACTAATATAAGGCCGCTTAGATCAC 58.368 40.000 15.20 0.00 0.00 3.06
2048 2094 5.746990 AATATAAGGCCGCTTAGATCACT 57.253 39.130 0.00 0.00 0.00 3.41
2049 2095 6.852420 AATATAAGGCCGCTTAGATCACTA 57.148 37.500 0.00 0.00 0.00 2.74
2050 2096 2.892784 AAGGCCGCTTAGATCACTAC 57.107 50.000 0.00 0.00 0.00 2.73
2055 2101 4.070716 GGCCGCTTAGATCACTACTAGTA 58.929 47.826 1.89 1.89 0.00 1.82
2060 2106 8.460428 GCCGCTTAGATCACTACTAGTAAATAT 58.540 37.037 3.76 0.00 0.00 1.28
2102 2148 3.674997 ACTTTACACTGCCCACATGTAG 58.325 45.455 0.00 0.00 30.82 2.74
2128 2174 1.541588 GGACCTCACAAATCCAAGTGC 59.458 52.381 0.00 0.00 35.76 4.40
2129 2175 2.229792 GACCTCACAAATCCAAGTGCA 58.770 47.619 0.00 0.00 35.76 4.57
2130 2176 1.956477 ACCTCACAAATCCAAGTGCAC 59.044 47.619 9.40 9.40 35.76 4.57
2131 2177 1.270550 CCTCACAAATCCAAGTGCACC 59.729 52.381 14.63 0.00 35.76 5.01
2132 2178 1.955778 CTCACAAATCCAAGTGCACCA 59.044 47.619 14.63 0.00 35.76 4.17
2133 2179 2.559668 CTCACAAATCCAAGTGCACCAT 59.440 45.455 14.63 0.00 35.76 3.55
2134 2180 2.296752 TCACAAATCCAAGTGCACCATG 59.703 45.455 14.63 13.16 35.76 3.66
2135 2181 2.296752 CACAAATCCAAGTGCACCATGA 59.703 45.455 14.63 7.77 0.00 3.07
2136 2182 2.559668 ACAAATCCAAGTGCACCATGAG 59.440 45.455 14.63 7.65 0.00 2.90
2137 2183 1.843368 AATCCAAGTGCACCATGAGG 58.157 50.000 14.63 8.69 42.21 3.86
2526 2572 1.000506 GCTCGTGTAGAAGGTGGTTCA 59.999 52.381 0.00 0.00 37.67 3.18
2648 2694 2.332063 AAATGGAATCGCGAGTGGAT 57.668 45.000 16.27 1.90 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.877178 TGGTGTAAAAATTGTGAATAGTGTTTT 57.123 25.926 0.00 0.00 0.00 2.43
19 20 9.292195 TGTGACTAGATATCGATAATGGTGTAA 57.708 33.333 9.61 0.00 0.00 2.41
20 21 8.727910 GTGTGACTAGATATCGATAATGGTGTA 58.272 37.037 9.61 0.00 0.00 2.90
21 22 7.230712 TGTGTGACTAGATATCGATAATGGTGT 59.769 37.037 9.61 5.33 0.00 4.16
22 23 7.593825 TGTGTGACTAGATATCGATAATGGTG 58.406 38.462 9.61 2.23 0.00 4.17
23 24 7.761038 TGTGTGACTAGATATCGATAATGGT 57.239 36.000 9.61 9.23 0.00 3.55
24 25 8.300286 AGTTGTGTGACTAGATATCGATAATGG 58.700 37.037 9.61 6.07 0.00 3.16
30 31 9.333724 TGTATTAGTTGTGTGACTAGATATCGA 57.666 33.333 0.00 0.00 33.91 3.59
31 32 9.946165 TTGTATTAGTTGTGTGACTAGATATCG 57.054 33.333 0.00 0.00 33.91 2.92
35 36 8.883731 GCATTTGTATTAGTTGTGTGACTAGAT 58.116 33.333 0.00 0.00 33.91 1.98
36 37 7.875554 TGCATTTGTATTAGTTGTGTGACTAGA 59.124 33.333 0.00 0.00 33.91 2.43
37 38 8.028540 TGCATTTGTATTAGTTGTGTGACTAG 57.971 34.615 0.00 0.00 33.91 2.57
38 39 7.971183 TGCATTTGTATTAGTTGTGTGACTA 57.029 32.000 0.00 0.00 0.00 2.59
39 40 6.875948 TGCATTTGTATTAGTTGTGTGACT 57.124 33.333 0.00 0.00 0.00 3.41
40 41 9.787532 AATATGCATTTGTATTAGTTGTGTGAC 57.212 29.630 3.54 0.00 0.00 3.67
41 42 9.786105 CAATATGCATTTGTATTAGTTGTGTGA 57.214 29.630 3.54 0.00 0.00 3.58
42 43 9.786105 TCAATATGCATTTGTATTAGTTGTGTG 57.214 29.630 3.54 0.00 0.00 3.82
58 59 9.193806 ACTGTTAAAAAGGAGATCAATATGCAT 57.806 29.630 3.79 3.79 0.00 3.96
59 60 8.579850 ACTGTTAAAAAGGAGATCAATATGCA 57.420 30.769 0.00 0.00 0.00 3.96
60 61 9.508567 GAACTGTTAAAAAGGAGATCAATATGC 57.491 33.333 0.00 0.00 0.00 3.14
63 64 9.567776 TGTGAACTGTTAAAAAGGAGATCAATA 57.432 29.630 0.00 0.00 0.00 1.90
64 65 8.463930 TGTGAACTGTTAAAAAGGAGATCAAT 57.536 30.769 0.00 0.00 0.00 2.57
65 66 7.773224 TCTGTGAACTGTTAAAAAGGAGATCAA 59.227 33.333 0.00 0.00 0.00 2.57
66 67 7.279615 TCTGTGAACTGTTAAAAAGGAGATCA 58.720 34.615 0.00 0.00 0.00 2.92
67 68 7.095017 CCTCTGTGAACTGTTAAAAAGGAGATC 60.095 40.741 0.00 0.00 0.00 2.75
68 69 6.712547 CCTCTGTGAACTGTTAAAAAGGAGAT 59.287 38.462 0.00 0.00 0.00 2.75
69 70 6.055588 CCTCTGTGAACTGTTAAAAAGGAGA 58.944 40.000 0.00 0.00 0.00 3.71
70 71 5.823045 ACCTCTGTGAACTGTTAAAAAGGAG 59.177 40.000 12.57 7.59 0.00 3.69
71 72 5.588648 CACCTCTGTGAACTGTTAAAAAGGA 59.411 40.000 12.57 0.32 45.76 3.36
72 73 5.733373 GCACCTCTGTGAACTGTTAAAAAGG 60.733 44.000 0.00 0.39 45.76 3.11
73 74 5.273944 GCACCTCTGTGAACTGTTAAAAAG 58.726 41.667 0.00 0.00 45.76 2.27
74 75 4.201871 CGCACCTCTGTGAACTGTTAAAAA 60.202 41.667 0.00 0.00 45.76 1.94
75 76 3.311322 CGCACCTCTGTGAACTGTTAAAA 59.689 43.478 0.00 0.00 45.76 1.52
76 77 2.869801 CGCACCTCTGTGAACTGTTAAA 59.130 45.455 0.00 0.00 45.76 1.52
77 78 2.479837 CGCACCTCTGTGAACTGTTAA 58.520 47.619 0.00 0.00 45.76 2.01
78 79 1.270094 CCGCACCTCTGTGAACTGTTA 60.270 52.381 0.00 0.00 45.76 2.41
79 80 0.532862 CCGCACCTCTGTGAACTGTT 60.533 55.000 0.00 0.00 45.76 3.16
80 81 1.069765 CCGCACCTCTGTGAACTGT 59.930 57.895 0.00 0.00 45.76 3.55
81 82 0.317160 TACCGCACCTCTGTGAACTG 59.683 55.000 0.00 0.00 45.76 3.16
82 83 0.603569 CTACCGCACCTCTGTGAACT 59.396 55.000 0.00 0.00 45.76 3.01
83 84 0.601558 TCTACCGCACCTCTGTGAAC 59.398 55.000 0.00 0.00 45.76 3.18
84 85 1.272490 CTTCTACCGCACCTCTGTGAA 59.728 52.381 0.00 0.00 45.76 3.18
85 86 0.888619 CTTCTACCGCACCTCTGTGA 59.111 55.000 0.00 0.00 45.76 3.58
86 87 0.737715 GCTTCTACCGCACCTCTGTG 60.738 60.000 0.00 0.00 45.65 3.66
87 88 0.900647 AGCTTCTACCGCACCTCTGT 60.901 55.000 0.00 0.00 0.00 3.41
88 89 0.179124 GAGCTTCTACCGCACCTCTG 60.179 60.000 0.00 0.00 0.00 3.35
89 90 1.324005 GGAGCTTCTACCGCACCTCT 61.324 60.000 0.00 0.00 35.59 3.69
90 91 1.142097 GGAGCTTCTACCGCACCTC 59.858 63.158 0.00 0.00 35.59 3.85
91 92 1.305381 AGGAGCTTCTACCGCACCT 60.305 57.895 0.00 0.00 42.47 4.00
92 93 0.386113 CTAGGAGCTTCTACCGCACC 59.614 60.000 0.00 0.00 38.25 5.01
93 94 1.390565 TCTAGGAGCTTCTACCGCAC 58.609 55.000 0.00 0.00 0.00 5.34
94 95 2.139323 TTCTAGGAGCTTCTACCGCA 57.861 50.000 0.00 0.00 0.00 5.69
95 96 2.795331 CGTTTCTAGGAGCTTCTACCGC 60.795 54.545 0.00 0.00 0.00 5.68
96 97 2.223525 CCGTTTCTAGGAGCTTCTACCG 60.224 54.545 0.00 0.00 0.00 4.02
97 98 3.022406 TCCGTTTCTAGGAGCTTCTACC 58.978 50.000 0.00 0.00 33.19 3.18
106 107 2.488355 CGCGCTCCGTTTCTAGGA 59.512 61.111 5.56 0.00 36.20 2.94
115 116 3.248171 GTGCTTCTACGCGCTCCG 61.248 66.667 5.73 0.00 44.21 4.63
119 120 0.093705 CTTGAAGTGCTTCTACGCGC 59.906 55.000 5.73 0.00 40.14 6.86
120 121 1.651138 CTCTTGAAGTGCTTCTACGCG 59.349 52.381 3.53 3.53 40.14 6.01
121 122 1.996191 CCTCTTGAAGTGCTTCTACGC 59.004 52.381 12.44 0.00 40.14 4.42
122 123 3.577649 TCCTCTTGAAGTGCTTCTACG 57.422 47.619 12.44 2.57 40.14 3.51
123 124 7.412020 CGTTATTTCCTCTTGAAGTGCTTCTAC 60.412 40.741 12.44 0.00 40.14 2.59
124 125 6.590292 CGTTATTTCCTCTTGAAGTGCTTCTA 59.410 38.462 12.44 4.96 40.14 2.10
125 126 5.409826 CGTTATTTCCTCTTGAAGTGCTTCT 59.590 40.000 12.44 0.00 40.14 2.85
126 127 5.390991 CCGTTATTTCCTCTTGAAGTGCTTC 60.391 44.000 5.07 5.07 39.91 3.86
127 128 4.455877 CCGTTATTTCCTCTTGAAGTGCTT 59.544 41.667 0.00 0.00 33.63 3.91
128 129 4.003648 CCGTTATTTCCTCTTGAAGTGCT 58.996 43.478 0.00 0.00 33.63 4.40
129 130 3.127030 CCCGTTATTTCCTCTTGAAGTGC 59.873 47.826 0.00 0.00 33.63 4.40
130 131 4.575885 TCCCGTTATTTCCTCTTGAAGTG 58.424 43.478 0.00 0.00 33.63 3.16
131 132 4.903045 TCCCGTTATTTCCTCTTGAAGT 57.097 40.909 0.00 0.00 33.63 3.01
132 133 6.759497 AATTCCCGTTATTTCCTCTTGAAG 57.241 37.500 0.00 0.00 33.63 3.02
133 134 7.375053 CAAAATTCCCGTTATTTCCTCTTGAA 58.625 34.615 0.00 0.00 0.00 2.69
134 135 6.571537 GCAAAATTCCCGTTATTTCCTCTTGA 60.572 38.462 0.00 0.00 0.00 3.02
135 136 5.576774 GCAAAATTCCCGTTATTTCCTCTTG 59.423 40.000 0.00 0.00 0.00 3.02
136 137 5.480422 AGCAAAATTCCCGTTATTTCCTCTT 59.520 36.000 0.00 0.00 0.00 2.85
137 138 5.016831 AGCAAAATTCCCGTTATTTCCTCT 58.983 37.500 0.00 0.00 0.00 3.69
138 139 5.324784 AGCAAAATTCCCGTTATTTCCTC 57.675 39.130 0.00 0.00 0.00 3.71
139 140 4.142469 CGAGCAAAATTCCCGTTATTTCCT 60.142 41.667 0.00 0.00 0.00 3.36
140 141 4.102649 CGAGCAAAATTCCCGTTATTTCC 58.897 43.478 0.00 0.00 0.00 3.13
141 142 4.791676 GTCGAGCAAAATTCCCGTTATTTC 59.208 41.667 0.00 0.00 0.00 2.17
142 143 4.380128 GGTCGAGCAAAATTCCCGTTATTT 60.380 41.667 10.30 0.00 0.00 1.40
143 144 3.128068 GGTCGAGCAAAATTCCCGTTATT 59.872 43.478 10.30 0.00 0.00 1.40
144 145 2.681344 GGTCGAGCAAAATTCCCGTTAT 59.319 45.455 10.30 0.00 0.00 1.89
145 146 2.078392 GGTCGAGCAAAATTCCCGTTA 58.922 47.619 10.30 0.00 0.00 3.18
146 147 0.879090 GGTCGAGCAAAATTCCCGTT 59.121 50.000 10.30 0.00 0.00 4.44
147 148 0.250553 TGGTCGAGCAAAATTCCCGT 60.251 50.000 16.20 0.00 0.00 5.28
148 149 0.447801 CTGGTCGAGCAAAATTCCCG 59.552 55.000 19.16 0.07 0.00 5.14
149 150 0.811281 CCTGGTCGAGCAAAATTCCC 59.189 55.000 19.16 0.00 0.00 3.97
150 151 1.468914 GACCTGGTCGAGCAAAATTCC 59.531 52.381 19.16 0.00 0.00 3.01
151 152 2.151202 TGACCTGGTCGAGCAAAATTC 58.849 47.619 21.15 12.09 34.95 2.17
152 153 2.270352 TGACCTGGTCGAGCAAAATT 57.730 45.000 21.15 2.74 34.95 1.82
153 154 2.496899 ATGACCTGGTCGAGCAAAAT 57.503 45.000 21.15 6.70 34.95 1.82
154 155 3.410631 TTATGACCTGGTCGAGCAAAA 57.589 42.857 21.15 4.80 34.95 2.44
155 156 3.410631 TTTATGACCTGGTCGAGCAAA 57.589 42.857 21.15 14.43 34.95 3.68
156 157 3.531538 GATTTATGACCTGGTCGAGCAA 58.468 45.455 21.15 11.70 34.95 3.91
157 158 2.158957 GGATTTATGACCTGGTCGAGCA 60.159 50.000 21.15 17.59 34.95 4.26
158 159 2.484889 GGATTTATGACCTGGTCGAGC 58.515 52.381 21.15 7.89 34.95 5.03
159 160 2.361119 TCGGATTTATGACCTGGTCGAG 59.639 50.000 21.15 6.80 34.95 4.04
160 161 2.380941 TCGGATTTATGACCTGGTCGA 58.619 47.619 21.15 10.27 34.95 4.20
161 162 2.882927 TCGGATTTATGACCTGGTCG 57.117 50.000 21.15 8.05 34.95 4.79
162 163 3.467803 CCTTCGGATTTATGACCTGGTC 58.532 50.000 19.96 19.96 0.00 4.02
163 164 2.172717 CCCTTCGGATTTATGACCTGGT 59.827 50.000 0.00 0.00 0.00 4.00
164 165 2.438021 TCCCTTCGGATTTATGACCTGG 59.562 50.000 0.00 0.00 31.13 4.45
165 166 3.388024 TCTCCCTTCGGATTTATGACCTG 59.612 47.826 0.00 0.00 37.60 4.00
166 167 3.654273 TCTCCCTTCGGATTTATGACCT 58.346 45.455 0.00 0.00 37.60 3.85
167 168 4.417426 TTCTCCCTTCGGATTTATGACC 57.583 45.455 0.00 0.00 37.60 4.02
168 169 6.760291 AGTATTCTCCCTTCGGATTTATGAC 58.240 40.000 0.00 0.00 37.60 3.06
169 170 6.996180 AGTATTCTCCCTTCGGATTTATGA 57.004 37.500 0.00 0.00 37.60 2.15
172 173 8.810041 GGTAATAGTATTCTCCCTTCGGATTTA 58.190 37.037 0.00 0.00 37.60 1.40
173 174 7.256583 GGGTAATAGTATTCTCCCTTCGGATTT 60.257 40.741 20.24 0.00 37.60 2.17
174 175 6.212993 GGGTAATAGTATTCTCCCTTCGGATT 59.787 42.308 20.24 0.00 37.60 3.01
175 176 5.720520 GGGTAATAGTATTCTCCCTTCGGAT 59.279 44.000 20.24 0.00 37.60 4.18
176 177 5.082425 GGGTAATAGTATTCTCCCTTCGGA 58.918 45.833 20.24 0.00 36.45 4.55
177 178 4.082354 CGGGTAATAGTATTCTCCCTTCGG 60.082 50.000 22.73 11.29 33.41 4.30
178 179 4.617762 GCGGGTAATAGTATTCTCCCTTCG 60.618 50.000 22.73 15.48 33.41 3.79
179 180 4.527427 AGCGGGTAATAGTATTCTCCCTTC 59.473 45.833 22.73 17.20 33.41 3.46
180 181 4.490706 AGCGGGTAATAGTATTCTCCCTT 58.509 43.478 22.73 14.00 33.41 3.95
181 182 4.129317 AGCGGGTAATAGTATTCTCCCT 57.871 45.455 22.73 12.71 33.41 4.20
182 183 4.159321 GGTAGCGGGTAATAGTATTCTCCC 59.841 50.000 18.70 18.70 0.00 4.30
183 184 4.142513 CGGTAGCGGGTAATAGTATTCTCC 60.143 50.000 6.39 3.88 0.00 3.71
184 185 4.673841 GCGGTAGCGGGTAATAGTATTCTC 60.674 50.000 17.08 0.00 0.00 2.87
185 186 3.192212 GCGGTAGCGGGTAATAGTATTCT 59.808 47.826 17.08 0.00 0.00 2.40
186 187 3.505836 GCGGTAGCGGGTAATAGTATTC 58.494 50.000 17.08 0.00 0.00 1.75
187 188 2.232208 GGCGGTAGCGGGTAATAGTATT 59.768 50.000 17.08 0.17 46.35 1.89
188 189 1.821136 GGCGGTAGCGGGTAATAGTAT 59.179 52.381 17.08 0.00 46.35 2.12
189 190 1.202927 AGGCGGTAGCGGGTAATAGTA 60.203 52.381 17.08 0.00 46.35 1.82
190 191 0.468771 AGGCGGTAGCGGGTAATAGT 60.469 55.000 17.08 0.00 46.35 2.12
191 192 0.243095 GAGGCGGTAGCGGGTAATAG 59.757 60.000 17.08 0.00 46.35 1.73
192 193 1.181098 GGAGGCGGTAGCGGGTAATA 61.181 60.000 17.08 0.00 46.35 0.98
193 194 2.505167 GGAGGCGGTAGCGGGTAAT 61.505 63.158 17.08 0.00 46.35 1.89
194 195 3.149648 GGAGGCGGTAGCGGGTAA 61.150 66.667 17.08 0.00 46.35 2.85
195 196 3.744003 ATGGAGGCGGTAGCGGGTA 62.744 63.158 17.08 0.00 46.35 3.69
197 198 4.301027 GATGGAGGCGGTAGCGGG 62.301 72.222 17.08 0.00 46.35 6.13
198 199 4.647615 CGATGGAGGCGGTAGCGG 62.648 72.222 17.08 0.00 46.35 5.52
199 200 3.900892 ACGATGGAGGCGGTAGCG 61.901 66.667 10.57 10.57 46.35 4.26
200 201 2.279517 CACGATGGAGGCGGTAGC 60.280 66.667 0.00 0.00 44.18 3.58
201 202 2.279517 GCACGATGGAGGCGGTAG 60.280 66.667 0.00 0.00 0.00 3.18
202 203 2.758327 AGCACGATGGAGGCGGTA 60.758 61.111 0.00 0.00 0.00 4.02
203 204 4.148825 GAGCACGATGGAGGCGGT 62.149 66.667 0.00 0.00 0.00 5.68
204 205 4.899239 GGAGCACGATGGAGGCGG 62.899 72.222 0.00 0.00 0.00 6.13
216 217 0.326595 TAATTGGTGCCTTCGGAGCA 59.673 50.000 0.00 0.00 38.08 4.26
217 218 1.017387 CTAATTGGTGCCTTCGGAGC 58.983 55.000 0.00 0.00 0.00 4.70
218 219 1.668419 CCTAATTGGTGCCTTCGGAG 58.332 55.000 0.00 0.00 0.00 4.63
219 220 0.393808 GCCTAATTGGTGCCTTCGGA 60.394 55.000 0.00 0.00 38.35 4.55
220 221 0.394352 AGCCTAATTGGTGCCTTCGG 60.394 55.000 0.00 0.00 38.35 4.30
221 222 2.325583 TAGCCTAATTGGTGCCTTCG 57.674 50.000 0.00 0.00 38.35 3.79
222 223 4.519350 GGTATTAGCCTAATTGGTGCCTTC 59.481 45.833 1.63 0.00 38.35 3.46
223 224 4.079443 TGGTATTAGCCTAATTGGTGCCTT 60.079 41.667 1.63 0.00 38.35 4.35
224 225 3.461831 TGGTATTAGCCTAATTGGTGCCT 59.538 43.478 1.63 0.00 38.35 4.75
225 226 3.568430 GTGGTATTAGCCTAATTGGTGCC 59.432 47.826 1.63 0.00 38.35 5.01
226 227 4.275936 CAGTGGTATTAGCCTAATTGGTGC 59.724 45.833 1.63 0.00 38.35 5.01
227 228 4.821805 CCAGTGGTATTAGCCTAATTGGTG 59.178 45.833 1.63 0.00 38.35 4.17
228 229 4.688874 GCCAGTGGTATTAGCCTAATTGGT 60.689 45.833 11.74 0.00 38.35 3.67
229 230 3.821033 GCCAGTGGTATTAGCCTAATTGG 59.179 47.826 11.74 5.16 39.35 3.16
230 231 4.718961 AGCCAGTGGTATTAGCCTAATTG 58.281 43.478 11.74 0.00 0.00 2.32
231 232 4.202472 GGAGCCAGTGGTATTAGCCTAATT 60.202 45.833 11.74 0.00 0.00 1.40
232 233 3.328050 GGAGCCAGTGGTATTAGCCTAAT 59.672 47.826 11.74 2.01 0.00 1.73
233 234 2.704065 GGAGCCAGTGGTATTAGCCTAA 59.296 50.000 11.74 0.00 0.00 2.69
234 235 2.326428 GGAGCCAGTGGTATTAGCCTA 58.674 52.381 11.74 0.00 0.00 3.93
235 236 1.132500 GGAGCCAGTGGTATTAGCCT 58.868 55.000 11.74 0.00 0.00 4.58
236 237 0.249911 CGGAGCCAGTGGTATTAGCC 60.250 60.000 11.74 2.85 0.00 3.93
237 238 0.750850 TCGGAGCCAGTGGTATTAGC 59.249 55.000 11.74 0.00 0.00 3.09
238 239 2.224066 CCTTCGGAGCCAGTGGTATTAG 60.224 54.545 11.74 1.49 0.00 1.73
239 240 1.760613 CCTTCGGAGCCAGTGGTATTA 59.239 52.381 11.74 0.00 0.00 0.98
240 241 0.541863 CCTTCGGAGCCAGTGGTATT 59.458 55.000 11.74 0.00 0.00 1.89
241 242 1.972660 GCCTTCGGAGCCAGTGGTAT 61.973 60.000 11.74 0.00 0.00 2.73
242 243 2.656069 GCCTTCGGAGCCAGTGGTA 61.656 63.158 11.74 0.00 0.00 3.25
243 244 4.021925 GCCTTCGGAGCCAGTGGT 62.022 66.667 11.74 0.00 0.00 4.16
244 245 3.551496 TTGCCTTCGGAGCCAGTGG 62.551 63.158 4.20 4.20 0.00 4.00
245 246 2.032528 TTGCCTTCGGAGCCAGTG 59.967 61.111 0.00 0.00 0.00 3.66
246 247 2.032681 GTTGCCTTCGGAGCCAGT 59.967 61.111 0.00 0.00 0.00 4.00
247 248 1.377725 ATGTTGCCTTCGGAGCCAG 60.378 57.895 0.00 0.00 0.00 4.85
248 249 1.675310 CATGTTGCCTTCGGAGCCA 60.675 57.895 0.00 0.00 0.00 4.75
249 250 3.056313 GCATGTTGCCTTCGGAGCC 62.056 63.158 0.00 0.00 37.42 4.70
250 251 1.660560 ATGCATGTTGCCTTCGGAGC 61.661 55.000 0.00 0.00 44.23 4.70
251 252 1.667236 TATGCATGTTGCCTTCGGAG 58.333 50.000 10.16 0.00 44.23 4.63
252 253 1.948834 CATATGCATGTTGCCTTCGGA 59.051 47.619 10.16 0.00 44.23 4.55
253 254 1.677576 ACATATGCATGTTGCCTTCGG 59.322 47.619 10.16 0.00 42.98 4.30
254 255 3.058708 CCTACATATGCATGTTGCCTTCG 60.059 47.826 10.16 0.00 42.98 3.79
255 256 4.136796 TCCTACATATGCATGTTGCCTTC 58.863 43.478 10.16 0.00 42.98 3.46
256 257 4.139786 CTCCTACATATGCATGTTGCCTT 58.860 43.478 10.16 0.00 42.98 4.35
257 258 3.392285 TCTCCTACATATGCATGTTGCCT 59.608 43.478 10.16 0.00 42.98 4.75
258 259 3.743521 TCTCCTACATATGCATGTTGCC 58.256 45.455 10.16 0.00 42.98 4.52
259 260 5.756195 TTTCTCCTACATATGCATGTTGC 57.244 39.130 10.16 0.00 42.98 4.17
260 261 7.709947 ACAATTTCTCCTACATATGCATGTTG 58.290 34.615 10.16 9.61 42.98 3.33
261 262 7.886629 ACAATTTCTCCTACATATGCATGTT 57.113 32.000 10.16 0.00 42.98 2.71
504 505 9.699703 ACATTGTACACGTTATGCACATATATA 57.300 29.630 0.00 0.00 34.44 0.86
505 506 8.495148 CACATTGTACACGTTATGCACATATAT 58.505 33.333 0.00 0.00 34.44 0.86
506 507 7.492994 ACACATTGTACACGTTATGCACATATA 59.507 33.333 0.00 0.00 34.44 0.86
507 508 6.315144 ACACATTGTACACGTTATGCACATAT 59.685 34.615 0.00 0.00 34.44 1.78
508 509 5.639931 ACACATTGTACACGTTATGCACATA 59.360 36.000 0.00 0.00 34.44 2.29
509 510 4.454161 ACACATTGTACACGTTATGCACAT 59.546 37.500 0.00 0.00 34.44 3.21
510 511 3.810386 ACACATTGTACACGTTATGCACA 59.190 39.130 0.00 0.00 32.40 4.57
511 512 4.398549 ACACATTGTACACGTTATGCAC 57.601 40.909 0.00 0.00 0.00 4.57
512 513 5.231702 ACTACACATTGTACACGTTATGCA 58.768 37.500 0.00 0.00 0.00 3.96
513 514 5.773239 ACTACACATTGTACACGTTATGC 57.227 39.130 0.00 0.00 0.00 3.14
514 515 7.430211 ACGATACTACACATTGTACACGTTATG 59.570 37.037 0.00 0.00 34.30 1.90
515 516 7.475015 ACGATACTACACATTGTACACGTTAT 58.525 34.615 0.00 0.00 34.30 1.89
516 517 6.841119 ACGATACTACACATTGTACACGTTA 58.159 36.000 0.00 0.00 34.30 3.18
517 518 5.702865 ACGATACTACACATTGTACACGTT 58.297 37.500 0.00 0.00 34.30 3.99
518 519 5.300969 ACGATACTACACATTGTACACGT 57.699 39.130 0.00 0.00 33.71 4.49
519 520 7.724128 TTTACGATACTACACATTGTACACG 57.276 36.000 0.00 0.00 0.00 4.49
524 525 9.309516 CTGGTATTTTACGATACTACACATTGT 57.690 33.333 0.00 0.00 33.86 2.71
525 526 8.273557 GCTGGTATTTTACGATACTACACATTG 58.726 37.037 0.00 0.00 33.86 2.82
526 527 7.982919 TGCTGGTATTTTACGATACTACACATT 59.017 33.333 0.00 0.00 33.86 2.71
527 528 7.494211 TGCTGGTATTTTACGATACTACACAT 58.506 34.615 0.00 0.00 33.86 3.21
528 529 6.865411 TGCTGGTATTTTACGATACTACACA 58.135 36.000 0.00 0.00 33.86 3.72
529 530 7.760131 TTGCTGGTATTTTACGATACTACAC 57.240 36.000 0.00 0.00 33.86 2.90
530 531 7.009448 CGTTTGCTGGTATTTTACGATACTACA 59.991 37.037 0.00 0.00 33.86 2.74
531 532 7.220683 TCGTTTGCTGGTATTTTACGATACTAC 59.779 37.037 0.00 0.00 33.86 2.73
532 533 7.257003 TCGTTTGCTGGTATTTTACGATACTA 58.743 34.615 0.00 0.00 33.86 1.82
533 534 6.101332 TCGTTTGCTGGTATTTTACGATACT 58.899 36.000 0.00 0.00 33.86 2.12
534 535 6.335176 TCGTTTGCTGGTATTTTACGATAC 57.665 37.500 0.00 0.00 32.39 2.24
535 536 6.964741 TTCGTTTGCTGGTATTTTACGATA 57.035 33.333 0.00 0.00 36.58 2.92
536 537 5.866335 TTCGTTTGCTGGTATTTTACGAT 57.134 34.783 0.00 0.00 36.58 3.73
537 538 5.670149 TTTCGTTTGCTGGTATTTTACGA 57.330 34.783 0.00 0.00 35.11 3.43
538 539 6.633634 TCTTTTTCGTTTGCTGGTATTTTACG 59.366 34.615 0.00 0.00 0.00 3.18
539 540 7.917720 TCTTTTTCGTTTGCTGGTATTTTAC 57.082 32.000 0.00 0.00 0.00 2.01
540 541 9.535878 AATTCTTTTTCGTTTGCTGGTATTTTA 57.464 25.926 0.00 0.00 0.00 1.52
541 542 8.432110 AATTCTTTTTCGTTTGCTGGTATTTT 57.568 26.923 0.00 0.00 0.00 1.82
542 543 9.535878 TTAATTCTTTTTCGTTTGCTGGTATTT 57.464 25.926 0.00 0.00 0.00 1.40
543 544 9.535878 TTTAATTCTTTTTCGTTTGCTGGTATT 57.464 25.926 0.00 0.00 0.00 1.89
544 545 9.705290 ATTTAATTCTTTTTCGTTTGCTGGTAT 57.295 25.926 0.00 0.00 0.00 2.73
545 546 9.535878 AATTTAATTCTTTTTCGTTTGCTGGTA 57.464 25.926 0.00 0.00 0.00 3.25
546 547 8.334632 CAATTTAATTCTTTTTCGTTTGCTGGT 58.665 29.630 0.00 0.00 0.00 4.00
547 548 8.547069 TCAATTTAATTCTTTTTCGTTTGCTGG 58.453 29.630 0.00 0.00 0.00 4.85
606 607 9.767228 GGTACTAAATGTTTGTGGGTTTTTATT 57.233 29.630 0.00 0.00 0.00 1.40
607 608 8.083462 CGGTACTAAATGTTTGTGGGTTTTTAT 58.917 33.333 0.00 0.00 0.00 1.40
608 609 7.424001 CGGTACTAAATGTTTGTGGGTTTTTA 58.576 34.615 0.00 0.00 0.00 1.52
609 610 6.274579 CGGTACTAAATGTTTGTGGGTTTTT 58.725 36.000 0.00 0.00 0.00 1.94
610 611 5.221283 CCGGTACTAAATGTTTGTGGGTTTT 60.221 40.000 0.00 0.00 0.00 2.43
611 612 4.278919 CCGGTACTAAATGTTTGTGGGTTT 59.721 41.667 0.00 0.00 0.00 3.27
612 613 3.822167 CCGGTACTAAATGTTTGTGGGTT 59.178 43.478 0.00 0.00 0.00 4.11
613 614 3.181441 ACCGGTACTAAATGTTTGTGGGT 60.181 43.478 4.49 0.00 0.00 4.51
614 615 3.414269 ACCGGTACTAAATGTTTGTGGG 58.586 45.455 4.49 0.00 0.00 4.61
615 616 4.320641 CCAACCGGTACTAAATGTTTGTGG 60.321 45.833 8.00 2.52 0.00 4.17
616 617 4.276431 ACCAACCGGTACTAAATGTTTGTG 59.724 41.667 8.00 0.00 46.71 3.33
617 618 4.276431 CACCAACCGGTACTAAATGTTTGT 59.724 41.667 8.00 0.00 46.94 2.83
618 619 4.276431 ACACCAACCGGTACTAAATGTTTG 59.724 41.667 8.00 3.32 46.94 2.93
619 620 4.463070 ACACCAACCGGTACTAAATGTTT 58.537 39.130 8.00 0.00 46.94 2.83
620 621 4.089408 ACACCAACCGGTACTAAATGTT 57.911 40.909 8.00 0.00 46.94 2.71
621 622 3.775261 ACACCAACCGGTACTAAATGT 57.225 42.857 8.00 4.16 46.94 2.71
622 623 4.392754 GGTAACACCAACCGGTACTAAATG 59.607 45.833 8.00 0.00 46.94 2.32
623 624 4.578871 GGTAACACCAACCGGTACTAAAT 58.421 43.478 8.00 0.00 46.94 1.40
624 625 4.001618 GGTAACACCAACCGGTACTAAA 57.998 45.455 8.00 0.00 46.94 1.85
625 626 3.676291 GGTAACACCAACCGGTACTAA 57.324 47.619 8.00 0.00 46.94 2.24
644 645 0.616891 AGCCCTTTAGTACCGGTTGG 59.383 55.000 15.04 5.94 42.84 3.77
645 646 1.406477 GGAGCCCTTTAGTACCGGTTG 60.406 57.143 15.04 0.00 0.00 3.77
646 647 0.907486 GGAGCCCTTTAGTACCGGTT 59.093 55.000 15.04 0.00 0.00 4.44
647 648 0.979709 GGGAGCCCTTTAGTACCGGT 60.980 60.000 13.98 13.98 0.00 5.28
648 649 1.828081 GGGAGCCCTTTAGTACCGG 59.172 63.158 0.00 0.00 0.00 5.28
649 650 1.440476 CGGGAGCCCTTTAGTACCG 59.560 63.158 3.70 0.00 0.00 4.02
650 651 1.828081 CCGGGAGCCCTTTAGTACC 59.172 63.158 3.70 0.00 0.00 3.34
651 652 1.145598 GCCGGGAGCCCTTTAGTAC 59.854 63.158 2.18 0.00 34.35 2.73
652 653 3.638132 GCCGGGAGCCCTTTAGTA 58.362 61.111 2.18 0.00 34.35 1.82
670 671 4.760047 CACGAGGCAGTTCCGGGG 62.760 72.222 0.00 0.00 40.77 5.73
673 674 4.680237 TGGCACGAGGCAGTTCCG 62.680 66.667 4.68 0.00 46.46 4.30
682 683 3.345808 CCAACCACGTGGCACGAG 61.346 66.667 42.65 34.61 46.05 4.18
688 689 1.862602 GCTAAAGGCCAACCACGTGG 61.863 60.000 32.83 32.83 42.05 4.94
689 690 1.169661 TGCTAAAGGCCAACCACGTG 61.170 55.000 9.08 9.08 40.92 4.49
690 691 1.149627 TGCTAAAGGCCAACCACGT 59.850 52.632 5.01 0.00 40.92 4.49
691 692 1.579429 GTGCTAAAGGCCAACCACG 59.421 57.895 5.01 0.00 40.92 4.94
692 693 1.862602 CGGTGCTAAAGGCCAACCAC 61.863 60.000 5.01 4.46 36.98 4.16
693 694 1.602323 CGGTGCTAAAGGCCAACCA 60.602 57.895 5.01 0.00 36.98 3.67
694 695 0.679960 ATCGGTGCTAAAGGCCAACC 60.680 55.000 5.01 1.39 40.92 3.77
695 696 1.132453 GAATCGGTGCTAAAGGCCAAC 59.868 52.381 5.01 0.00 40.92 3.77
696 697 1.459450 GAATCGGTGCTAAAGGCCAA 58.541 50.000 5.01 0.00 40.92 4.52
697 698 0.742990 CGAATCGGTGCTAAAGGCCA 60.743 55.000 5.01 0.00 40.92 5.36
698 699 0.743345 ACGAATCGGTGCTAAAGGCC 60.743 55.000 7.80 0.00 40.92 5.19
699 700 0.373716 CACGAATCGGTGCTAAAGGC 59.626 55.000 7.80 0.00 42.22 4.35
707 708 1.787847 GGTTCAGCACGAATCGGTG 59.212 57.895 7.80 4.29 40.89 4.94
708 709 4.278956 GGTTCAGCACGAATCGGT 57.721 55.556 7.80 0.00 35.63 4.69
711 712 0.997196 GTACCGGTTCAGCACGAATC 59.003 55.000 15.04 0.00 35.63 2.52
712 713 0.606604 AGTACCGGTTCAGCACGAAT 59.393 50.000 15.04 0.00 35.63 3.34
713 714 1.246649 TAGTACCGGTTCAGCACGAA 58.753 50.000 15.04 0.00 0.00 3.85
714 715 1.246649 TTAGTACCGGTTCAGCACGA 58.753 50.000 15.04 0.00 0.00 4.35
715 716 1.990563 CTTTAGTACCGGTTCAGCACG 59.009 52.381 15.04 0.00 0.00 5.34
716 717 2.344025 CCTTTAGTACCGGTTCAGCAC 58.656 52.381 15.04 3.84 0.00 4.40
717 718 1.276989 CCCTTTAGTACCGGTTCAGCA 59.723 52.381 15.04 0.00 0.00 4.41
718 719 1.406477 CCCCTTTAGTACCGGTTCAGC 60.406 57.143 15.04 0.59 0.00 4.26
719 720 1.208776 CCCCCTTTAGTACCGGTTCAG 59.791 57.143 15.04 0.52 0.00 3.02
720 721 1.278537 CCCCCTTTAGTACCGGTTCA 58.721 55.000 15.04 0.00 0.00 3.18
741 742 0.608308 GTGTGGTCACTAAAGCCCCC 60.608 60.000 2.66 0.00 40.98 5.40
742 743 2.942641 GTGTGGTCACTAAAGCCCC 58.057 57.895 2.66 0.00 40.98 5.80
759 760 0.470766 TCCACAACCCGCACTAAAGT 59.529 50.000 0.00 0.00 0.00 2.66
760 761 1.265905 GTTCCACAACCCGCACTAAAG 59.734 52.381 0.00 0.00 0.00 1.85
761 762 1.310904 GTTCCACAACCCGCACTAAA 58.689 50.000 0.00 0.00 0.00 1.85
762 763 0.535553 GGTTCCACAACCCGCACTAA 60.536 55.000 0.00 0.00 46.01 2.24
763 764 1.071814 GGTTCCACAACCCGCACTA 59.928 57.895 0.00 0.00 46.01 2.74
764 765 2.203294 GGTTCCACAACCCGCACT 60.203 61.111 0.00 0.00 46.01 4.40
771 772 3.069289 CCTTTAGTACCGGTTCCACAAC 58.931 50.000 15.04 2.91 0.00 3.32
772 773 2.038820 CCCTTTAGTACCGGTTCCACAA 59.961 50.000 15.04 0.00 0.00 3.33
773 774 1.624813 CCCTTTAGTACCGGTTCCACA 59.375 52.381 15.04 0.00 0.00 4.17
774 775 1.676916 GCCCTTTAGTACCGGTTCCAC 60.677 57.143 15.04 4.79 0.00 4.02
775 776 0.614812 GCCCTTTAGTACCGGTTCCA 59.385 55.000 15.04 0.00 0.00 3.53
776 777 0.107508 GGCCCTTTAGTACCGGTTCC 60.108 60.000 15.04 3.66 0.00 3.62
777 778 0.907486 AGGCCCTTTAGTACCGGTTC 59.093 55.000 15.04 8.12 0.00 3.62
778 779 1.365293 AAGGCCCTTTAGTACCGGTT 58.635 50.000 15.04 0.00 0.00 4.44
779 780 1.833630 GTAAGGCCCTTTAGTACCGGT 59.166 52.381 13.98 13.98 0.00 5.28
780 781 1.202452 CGTAAGGCCCTTTAGTACCGG 60.202 57.143 0.00 0.00 0.00 5.28
781 782 1.750778 TCGTAAGGCCCTTTAGTACCG 59.249 52.381 0.00 0.00 38.47 4.02
782 783 3.893326 TTCGTAAGGCCCTTTAGTACC 57.107 47.619 0.00 0.00 38.47 3.34
783 784 4.047142 CGATTCGTAAGGCCCTTTAGTAC 58.953 47.826 0.00 0.00 38.47 2.73
784 785 3.068590 CCGATTCGTAAGGCCCTTTAGTA 59.931 47.826 0.00 0.00 38.47 1.82
785 786 2.159000 CCGATTCGTAAGGCCCTTTAGT 60.159 50.000 0.00 0.00 38.47 2.24
786 787 2.159000 ACCGATTCGTAAGGCCCTTTAG 60.159 50.000 0.00 0.00 38.47 1.85
787 788 1.832998 ACCGATTCGTAAGGCCCTTTA 59.167 47.619 0.00 0.00 38.47 1.85
788 789 0.616891 ACCGATTCGTAAGGCCCTTT 59.383 50.000 0.00 0.00 38.47 3.11
789 790 0.107848 CACCGATTCGTAAGGCCCTT 60.108 55.000 0.00 0.00 38.47 3.95
790 791 1.520666 CACCGATTCGTAAGGCCCT 59.479 57.895 0.00 0.00 38.47 5.19
791 792 2.178235 GCACCGATTCGTAAGGCCC 61.178 63.158 0.00 0.00 38.47 5.80
792 793 0.103572 TAGCACCGATTCGTAAGGCC 59.896 55.000 5.20 0.00 38.47 5.19
793 794 2.150397 ATAGCACCGATTCGTAAGGC 57.850 50.000 5.20 3.20 38.47 4.35
794 795 2.221055 GCAATAGCACCGATTCGTAAGG 59.779 50.000 5.20 0.00 41.58 2.69
795 796 2.221055 GGCAATAGCACCGATTCGTAAG 59.779 50.000 5.20 0.00 44.61 2.34
796 797 2.206750 GGCAATAGCACCGATTCGTAA 58.793 47.619 5.20 0.00 44.61 3.18
797 798 1.539496 GGGCAATAGCACCGATTCGTA 60.539 52.381 5.20 0.00 44.61 3.43
798 799 0.814010 GGGCAATAGCACCGATTCGT 60.814 55.000 5.20 0.00 44.61 3.85
799 800 1.941812 GGGCAATAGCACCGATTCG 59.058 57.895 0.00 0.00 44.61 3.34
805 806 0.393267 TGTAACCGGGCAATAGCACC 60.393 55.000 6.32 0.00 42.77 5.01
806 807 0.730840 GTGTAACCGGGCAATAGCAC 59.269 55.000 6.32 1.04 44.61 4.40
807 808 0.616371 AGTGTAACCGGGCAATAGCA 59.384 50.000 6.32 0.00 39.77 3.49
808 809 2.159000 ACTAGTGTAACCGGGCAATAGC 60.159 50.000 21.61 2.54 36.94 2.97
809 810 3.118884 ACACTAGTGTAACCGGGCAATAG 60.119 47.826 26.91 20.70 42.90 1.73
810 811 2.833338 ACACTAGTGTAACCGGGCAATA 59.167 45.455 26.91 4.68 42.90 1.90
811 812 1.626825 ACACTAGTGTAACCGGGCAAT 59.373 47.619 26.91 3.59 42.90 3.56
812 813 1.050204 ACACTAGTGTAACCGGGCAA 58.950 50.000 26.91 0.00 42.90 4.52
813 814 1.545582 GTACACTAGTGTAACCGGGCA 59.454 52.381 32.02 11.56 46.33 5.36
814 815 1.545582 TGTACACTAGTGTAACCGGGC 59.454 52.381 32.02 20.55 46.33 6.13
815 816 3.429822 CCATGTACACTAGTGTAACCGGG 60.430 52.174 32.02 25.42 46.33 5.73
816 817 3.777478 CCATGTACACTAGTGTAACCGG 58.223 50.000 32.02 26.28 46.33 5.28
817 818 3.184541 GCCATGTACACTAGTGTAACCG 58.815 50.000 32.02 22.55 46.33 4.44
818 819 3.930848 GTGCCATGTACACTAGTGTAACC 59.069 47.826 32.02 22.42 46.33 2.85
819 820 4.817517 AGTGCCATGTACACTAGTGTAAC 58.182 43.478 32.02 24.85 46.32 2.50
828 829 3.118775 TCCTGACATAGTGCCATGTACAC 60.119 47.826 0.00 7.80 39.25 2.90
829 830 3.103742 TCCTGACATAGTGCCATGTACA 58.896 45.455 0.00 0.00 39.25 2.90
830 831 3.819564 TCCTGACATAGTGCCATGTAC 57.180 47.619 0.00 0.00 39.25 2.90
868 869 5.940470 GTGATCTCTAAACAACAATGGAGGT 59.060 40.000 0.00 0.00 0.00 3.85
891 892 0.749091 TGCTGTGCTGCTTGAACTGT 60.749 50.000 0.00 0.00 0.00 3.55
915 924 2.586425 CCTCTGTCAAGCTTTGGGAAA 58.414 47.619 0.00 0.00 0.00 3.13
962 971 5.977129 CACCTCACTGAAACAATTTACCAAC 59.023 40.000 0.00 0.00 0.00 3.77
970 979 5.913137 TGTTTTCACCTCACTGAAACAAT 57.087 34.783 0.00 0.00 39.37 2.71
1032 1046 0.251474 ATGCAAAGGCCAAGAGAGCA 60.251 50.000 5.01 6.65 40.13 4.26
1192 1219 5.278315 ATTGGATGCATTCATCGAAGATGTG 60.278 40.000 8.93 3.71 45.91 3.21
1286 1314 0.178767 CGGACAGATGGATGCCAGAA 59.821 55.000 0.00 0.00 36.75 3.02
1293 1321 0.392998 GTGTTGCCGGACAGATGGAT 60.393 55.000 5.05 0.00 0.00 3.41
1367 1395 2.092212 AGAGATGCCCATGGTGTTAAGG 60.092 50.000 11.73 0.00 0.00 2.69
1388 1416 1.921243 CATAGTCAATGCGGACGACA 58.079 50.000 10.34 0.00 42.62 4.35
1511 1539 2.795329 ACCTTGGTGAAGTGCCTATTG 58.205 47.619 0.00 0.00 0.00 1.90
1514 1542 2.038557 GAGAACCTTGGTGAAGTGCCTA 59.961 50.000 0.00 0.00 0.00 3.93
1663 1691 1.002624 GGCTCCGATCCAAACACCA 60.003 57.895 0.00 0.00 0.00 4.17
1703 1731 2.269978 CACCTGGAATGCCTTGGTG 58.730 57.895 17.35 17.35 45.52 4.17
1733 1761 4.910195 ACTGTGCTTGAATCCAATCTACA 58.090 39.130 0.00 0.00 0.00 2.74
1745 1773 6.374333 ACAAGACTTTTTAGAACTGTGCTTGA 59.626 34.615 0.00 0.00 34.67 3.02
1830 1866 2.159212 TGCAATGCAATCCGAATGAAGG 60.159 45.455 5.01 0.00 34.76 3.46
1838 1879 4.932268 AAAGAAAATGCAATGCAATCCG 57.068 36.364 13.45 0.00 43.62 4.18
1911 1956 6.198650 ACCACAACACATCAATGATACATG 57.801 37.500 0.00 0.00 0.00 3.21
2013 2059 8.591072 AGCGGCCTTATATTAGTTTACATAAGA 58.409 33.333 0.00 0.00 34.36 2.10
2021 2067 7.603024 GTGATCTAAGCGGCCTTATATTAGTTT 59.397 37.037 0.00 0.00 33.31 2.66
2025 2071 6.852420 AGTGATCTAAGCGGCCTTATATTA 57.148 37.500 0.00 0.00 33.31 0.98
2034 2080 5.686159 TTACTAGTAGTGATCTAAGCGGC 57.314 43.478 13.29 0.00 0.00 6.53
2043 2089 8.948145 CGGCAGTAGATATTTACTAGTAGTGAT 58.052 37.037 13.29 9.19 32.74 3.06
2044 2090 7.094890 GCGGCAGTAGATATTTACTAGTAGTGA 60.095 40.741 13.29 1.35 32.74 3.41
2045 2091 7.022384 GCGGCAGTAGATATTTACTAGTAGTG 58.978 42.308 13.29 0.00 32.74 2.74
2046 2092 6.941436 AGCGGCAGTAGATATTTACTAGTAGT 59.059 38.462 8.14 8.14 32.74 2.73
2047 2093 7.119407 TCAGCGGCAGTAGATATTTACTAGTAG 59.881 40.741 5.66 0.00 32.74 2.57
2048 2094 6.938596 TCAGCGGCAGTAGATATTTACTAGTA 59.061 38.462 5.66 0.00 32.74 1.82
2049 2095 5.768662 TCAGCGGCAGTAGATATTTACTAGT 59.231 40.000 5.66 0.00 32.74 2.57
2050 2096 6.255596 TCAGCGGCAGTAGATATTTACTAG 57.744 41.667 5.66 2.95 32.74 2.57
2055 2101 3.990469 CGAATCAGCGGCAGTAGATATTT 59.010 43.478 1.45 0.00 0.00 1.40
2060 2106 0.179137 CACGAATCAGCGGCAGTAGA 60.179 55.000 1.45 0.00 35.12 2.59
2128 2174 1.077930 CCAGGCTGACCTCATGGTG 60.078 63.158 17.94 0.00 46.34 4.17
2129 2175 1.229625 TCCAGGCTGACCTCATGGT 60.230 57.895 17.94 0.00 46.34 3.55
2130 2176 1.222936 GTCCAGGCTGACCTCATGG 59.777 63.158 17.94 0.00 46.34 3.66
2131 2177 0.325933 TTGTCCAGGCTGACCTCATG 59.674 55.000 17.94 0.00 46.34 3.07
2132 2178 0.617413 CTTGTCCAGGCTGACCTCAT 59.383 55.000 17.94 0.00 46.34 2.90
2133 2179 0.764369 ACTTGTCCAGGCTGACCTCA 60.764 55.000 17.94 6.44 46.34 3.86
2134 2180 0.398318 AACTTGTCCAGGCTGACCTC 59.602 55.000 17.94 3.78 46.34 3.85
2136 2182 0.954452 CAAACTTGTCCAGGCTGACC 59.046 55.000 17.94 6.24 34.25 4.02
2137 2183 0.954452 CCAAACTTGTCCAGGCTGAC 59.046 55.000 17.94 12.66 35.77 3.51
2138 2184 0.843309 TCCAAACTTGTCCAGGCTGA 59.157 50.000 17.94 0.00 0.00 4.26
2139 2185 0.954452 GTCCAAACTTGTCCAGGCTG 59.046 55.000 7.75 7.75 0.00 4.85
2140 2186 0.178990 GGTCCAAACTTGTCCAGGCT 60.179 55.000 0.00 0.00 0.00 4.58
2141 2187 1.515521 CGGTCCAAACTTGTCCAGGC 61.516 60.000 0.00 0.00 0.00 4.85
2142 2188 0.889186 CCGGTCCAAACTTGTCCAGG 60.889 60.000 0.00 0.00 0.00 4.45
2143 2189 1.515521 GCCGGTCCAAACTTGTCCAG 61.516 60.000 1.90 0.00 0.00 3.86
2144 2190 1.527380 GCCGGTCCAAACTTGTCCA 60.527 57.895 1.90 0.00 0.00 4.02
2145 2191 2.265904 GGCCGGTCCAAACTTGTCC 61.266 63.158 1.90 0.00 34.01 4.02
2146 2192 2.613506 CGGCCGGTCCAAACTTGTC 61.614 63.158 20.10 0.00 34.01 3.18
2147 2193 2.593436 CGGCCGGTCCAAACTTGT 60.593 61.111 20.10 0.00 34.01 3.16
2148 2194 4.038080 GCGGCCGGTCCAAACTTG 62.038 66.667 29.38 0.00 34.01 3.16
2199 2245 2.614481 GGTCCTGAAAATACAGACCGCA 60.614 50.000 0.00 0.00 39.94 5.69
2648 2694 2.678580 TGTCTCCGGCGATCACCA 60.679 61.111 9.30 0.00 0.00 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.