Multiple sequence alignment - TraesCS6B01G047000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G047000 chr6B 100.000 3926 0 0 1 3926 27913003 27909078 0.000000e+00 7251
1 TraesCS6B01G047000 chr6B 99.704 1012 3 0 2915 3926 27928446 27927435 0.000000e+00 1853
2 TraesCS6B01G047000 chr6B 98.221 1012 18 0 2915 3926 32538768 32539779 0.000000e+00 1770
3 TraesCS6B01G047000 chr6B 98.221 1012 18 0 2915 3926 709037795 709038806 0.000000e+00 1770
4 TraesCS6B01G047000 chr6D 85.987 2198 264 22 377 2564 16156810 16154647 0.000000e+00 2313
5 TraesCS6B01G047000 chr6D 88.308 402 43 3 2513 2913 16154644 16154246 2.740000e-131 479
6 TraesCS6B01G047000 chr4A 98.518 1012 15 0 2915 3926 731436071 731437082 0.000000e+00 1786
7 TraesCS6B01G047000 chr1B 98.419 1012 16 0 2915 3926 15507539 15506528 0.000000e+00 1781
8 TraesCS6B01G047000 chr1B 98.419 1012 16 0 2915 3926 60763090 60762079 0.000000e+00 1781
9 TraesCS6B01G047000 chr2B 98.320 1012 17 0 2915 3926 29234708 29233697 0.000000e+00 1775
10 TraesCS6B01G047000 chr2B 79.966 1168 208 22 937 2091 799567856 799566702 0.000000e+00 837
11 TraesCS6B01G047000 chr2B 80.157 1144 197 21 952 2091 799608724 799607607 0.000000e+00 828
12 TraesCS6B01G047000 chr2B 79.686 1147 195 25 954 2092 799537644 799536528 0.000000e+00 793
13 TraesCS6B01G047000 chr2B 78.701 1155 212 21 941 2091 799548414 799547290 0.000000e+00 739
14 TraesCS6B01G047000 chr2B 84.190 253 37 3 2628 2879 799535728 799535478 3.920000e-60 243
15 TraesCS6B01G047000 chr2B 87.383 214 24 3 2667 2879 799565760 799565549 3.920000e-60 243
16 TraesCS6B01G047000 chr2B 86.286 175 24 0 2710 2884 799546179 799546005 1.440000e-44 191
17 TraesCS6B01G047000 chr5B 98.221 1012 18 0 2915 3926 599495629 599494618 0.000000e+00 1770
18 TraesCS6B01G047000 chr5B 83.636 110 18 0 2717 2826 6975226 6975335 1.930000e-18 104
19 TraesCS6B01G047000 chr3B 98.221 1012 18 0 2915 3926 51174459 51173448 0.000000e+00 1770
20 TraesCS6B01G047000 chr3B 85.171 263 34 3 2628 2886 829253537 829253798 8.360000e-67 265
21 TraesCS6B01G047000 chrUn 100.000 488 0 0 1 488 370995358 370995845 0.000000e+00 902
22 TraesCS6B01G047000 chr2D 80.473 1142 193 19 954 2091 642216457 642217572 0.000000e+00 846
23 TraesCS6B01G047000 chr2D 80.332 1144 195 21 952 2091 642209173 642210290 0.000000e+00 839
24 TraesCS6B01G047000 chr2A 79.738 1145 196 23 954 2091 767024614 767025729 0.000000e+00 797
25 TraesCS6B01G047000 chr4D 78.371 1142 205 28 965 2091 504255940 504257054 0.000000e+00 702
26 TraesCS6B01G047000 chr5A 79.722 503 96 5 1593 2092 688929464 688929963 3.730000e-95 359
27 TraesCS6B01G047000 chr5A 84.536 194 25 2 2710 2898 659253966 659253773 1.860000e-43 187
28 TraesCS6B01G047000 chr4B 79.059 425 81 6 1585 2005 650864967 650865387 6.420000e-73 285
29 TraesCS6B01G047000 chr4B 83.200 250 39 2 2633 2879 650866007 650866256 3.950000e-55 226


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G047000 chr6B 27909078 27913003 3925 True 7251.0 7251 100.0000 1 3926 1 chr6B.!!$R1 3925
1 TraesCS6B01G047000 chr6B 27927435 27928446 1011 True 1853.0 1853 99.7040 2915 3926 1 chr6B.!!$R2 1011
2 TraesCS6B01G047000 chr6B 32538768 32539779 1011 False 1770.0 1770 98.2210 2915 3926 1 chr6B.!!$F1 1011
3 TraesCS6B01G047000 chr6B 709037795 709038806 1011 False 1770.0 1770 98.2210 2915 3926 1 chr6B.!!$F2 1011
4 TraesCS6B01G047000 chr6D 16154246 16156810 2564 True 1396.0 2313 87.1475 377 2913 2 chr6D.!!$R1 2536
5 TraesCS6B01G047000 chr4A 731436071 731437082 1011 False 1786.0 1786 98.5180 2915 3926 1 chr4A.!!$F1 1011
6 TraesCS6B01G047000 chr1B 15506528 15507539 1011 True 1781.0 1781 98.4190 2915 3926 1 chr1B.!!$R1 1011
7 TraesCS6B01G047000 chr1B 60762079 60763090 1011 True 1781.0 1781 98.4190 2915 3926 1 chr1B.!!$R2 1011
8 TraesCS6B01G047000 chr2B 29233697 29234708 1011 True 1775.0 1775 98.3200 2915 3926 1 chr2B.!!$R1 1011
9 TraesCS6B01G047000 chr2B 799607607 799608724 1117 True 828.0 828 80.1570 952 2091 1 chr2B.!!$R2 1139
10 TraesCS6B01G047000 chr2B 799565549 799567856 2307 True 540.0 837 83.6745 937 2879 2 chr2B.!!$R5 1942
11 TraesCS6B01G047000 chr2B 799535478 799537644 2166 True 518.0 793 81.9380 954 2879 2 chr2B.!!$R3 1925
12 TraesCS6B01G047000 chr2B 799546005 799548414 2409 True 465.0 739 82.4935 941 2884 2 chr2B.!!$R4 1943
13 TraesCS6B01G047000 chr5B 599494618 599495629 1011 True 1770.0 1770 98.2210 2915 3926 1 chr5B.!!$R1 1011
14 TraesCS6B01G047000 chr3B 51173448 51174459 1011 True 1770.0 1770 98.2210 2915 3926 1 chr3B.!!$R1 1011
15 TraesCS6B01G047000 chr2D 642216457 642217572 1115 False 846.0 846 80.4730 954 2091 1 chr2D.!!$F2 1137
16 TraesCS6B01G047000 chr2D 642209173 642210290 1117 False 839.0 839 80.3320 952 2091 1 chr2D.!!$F1 1139
17 TraesCS6B01G047000 chr2A 767024614 767025729 1115 False 797.0 797 79.7380 954 2091 1 chr2A.!!$F1 1137
18 TraesCS6B01G047000 chr4D 504255940 504257054 1114 False 702.0 702 78.3710 965 2091 1 chr4D.!!$F1 1126
19 TraesCS6B01G047000 chr4B 650864967 650866256 1289 False 255.5 285 81.1295 1585 2879 2 chr4B.!!$F1 1294

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
198 199 0.035317 AATCAGCTCAGACAACGCCA 59.965 50.0 0.0 0.0 0.0 5.69 F
2126 2154 0.035056 CTGGAGGTGGATGGGTCAAC 60.035 60.0 0.0 0.0 0.0 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2139 2167 0.100682 TACGCTGCTCGAGTCCAATC 59.899 55.000 15.13 0.0 41.67 2.67 R
3264 3946 9.035607 GTCATAATCGTAGTTCATGACTTCATT 57.964 33.333 0.00 0.0 41.34 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.873739 ATTGCCGAGAAAGAAAACAATTAAG 57.126 32.000 0.00 0.00 0.00 1.85
25 26 5.219633 TGCCGAGAAAGAAAACAATTAAGC 58.780 37.500 0.00 0.00 0.00 3.09
26 27 5.009610 TGCCGAGAAAGAAAACAATTAAGCT 59.990 36.000 0.00 0.00 0.00 3.74
27 28 6.205853 TGCCGAGAAAGAAAACAATTAAGCTA 59.794 34.615 0.00 0.00 0.00 3.32
28 29 7.081976 GCCGAGAAAGAAAACAATTAAGCTAA 58.918 34.615 0.00 0.00 0.00 3.09
29 30 7.593644 GCCGAGAAAGAAAACAATTAAGCTAAA 59.406 33.333 0.00 0.00 0.00 1.85
30 31 9.458374 CCGAGAAAGAAAACAATTAAGCTAAAA 57.542 29.630 0.00 0.00 0.00 1.52
42 43 9.638239 ACAATTAAGCTAAAATACAACACCATG 57.362 29.630 0.00 0.00 0.00 3.66
43 44 9.853555 CAATTAAGCTAAAATACAACACCATGA 57.146 29.630 0.00 0.00 0.00 3.07
44 45 9.855021 AATTAAGCTAAAATACAACACCATGAC 57.145 29.630 0.00 0.00 0.00 3.06
45 46 6.892658 AAGCTAAAATACAACACCATGACA 57.107 33.333 0.00 0.00 0.00 3.58
46 47 6.254281 AGCTAAAATACAACACCATGACAC 57.746 37.500 0.00 0.00 0.00 3.67
47 48 5.767665 AGCTAAAATACAACACCATGACACA 59.232 36.000 0.00 0.00 0.00 3.72
48 49 5.856455 GCTAAAATACAACACCATGACACAC 59.144 40.000 0.00 0.00 0.00 3.82
49 50 4.846779 AAATACAACACCATGACACACC 57.153 40.909 0.00 0.00 0.00 4.16
50 51 2.264005 TACAACACCATGACACACCC 57.736 50.000 0.00 0.00 0.00 4.61
51 52 0.550914 ACAACACCATGACACACCCT 59.449 50.000 0.00 0.00 0.00 4.34
52 53 1.771854 ACAACACCATGACACACCCTA 59.228 47.619 0.00 0.00 0.00 3.53
53 54 2.224523 ACAACACCATGACACACCCTAG 60.225 50.000 0.00 0.00 0.00 3.02
54 55 0.984230 ACACCATGACACACCCTAGG 59.016 55.000 0.06 0.06 0.00 3.02
55 56 0.984230 CACCATGACACACCCTAGGT 59.016 55.000 8.29 0.00 35.62 3.08
56 57 1.066143 CACCATGACACACCCTAGGTC 60.066 57.143 8.29 0.00 31.02 3.85
57 58 1.275666 CCATGACACACCCTAGGTCA 58.724 55.000 8.29 4.67 44.73 4.02
58 59 1.066143 CCATGACACACCCTAGGTCAC 60.066 57.143 8.29 0.00 43.58 3.67
59 60 1.066143 CATGACACACCCTAGGTCACC 60.066 57.143 8.29 0.00 43.58 4.02
60 61 0.190069 TGACACACCCTAGGTCACCT 59.810 55.000 8.29 0.00 36.69 4.00
61 62 1.430075 TGACACACCCTAGGTCACCTA 59.570 52.381 8.29 2.74 36.69 3.08
62 63 2.158279 TGACACACCCTAGGTCACCTAA 60.158 50.000 4.72 0.00 35.49 2.69
63 64 2.496470 GACACACCCTAGGTCACCTAAG 59.504 54.545 4.72 0.00 35.49 2.18
64 65 1.207329 CACACCCTAGGTCACCTAAGC 59.793 57.143 4.72 0.00 35.49 3.09
65 66 1.078989 ACACCCTAGGTCACCTAAGCT 59.921 52.381 4.72 0.00 35.49 3.74
66 67 1.757699 CACCCTAGGTCACCTAAGCTC 59.242 57.143 4.72 0.00 35.49 4.09
67 68 1.343176 ACCCTAGGTCACCTAAGCTCC 60.343 57.143 4.72 0.00 35.49 4.70
68 69 1.343075 CCCTAGGTCACCTAAGCTCCA 60.343 57.143 4.72 0.00 35.49 3.86
69 70 1.757699 CCTAGGTCACCTAAGCTCCAC 59.242 57.143 4.72 0.00 35.49 4.02
70 71 2.457598 CTAGGTCACCTAAGCTCCACA 58.542 52.381 4.72 0.00 35.49 4.17
71 72 1.729586 AGGTCACCTAAGCTCCACAA 58.270 50.000 0.00 0.00 28.47 3.33
72 73 1.625818 AGGTCACCTAAGCTCCACAAG 59.374 52.381 0.00 0.00 28.47 3.16
73 74 1.339151 GGTCACCTAAGCTCCACAAGG 60.339 57.143 0.00 0.00 35.14 3.61
74 75 1.623811 GTCACCTAAGCTCCACAAGGA 59.376 52.381 6.15 0.00 43.21 3.36
82 83 3.916184 TCCACAAGGAGGGGGAAC 58.084 61.111 0.00 0.00 42.98 3.62
83 84 2.221299 TCCACAAGGAGGGGGAACG 61.221 63.158 0.00 0.00 42.98 3.95
84 85 2.221299 CCACAAGGAGGGGGAACGA 61.221 63.158 0.00 0.00 37.04 3.85
85 86 1.003718 CACAAGGAGGGGGAACGAC 60.004 63.158 0.00 0.00 0.00 4.34
86 87 2.264794 CAAGGAGGGGGAACGACG 59.735 66.667 0.00 0.00 0.00 5.12
87 88 3.703127 AAGGAGGGGGAACGACGC 61.703 66.667 0.00 0.00 0.00 5.19
88 89 4.698625 AGGAGGGGGAACGACGCT 62.699 66.667 0.00 0.00 0.00 5.07
89 90 2.757099 GGAGGGGGAACGACGCTA 60.757 66.667 0.00 0.00 0.00 4.26
90 91 2.353610 GGAGGGGGAACGACGCTAA 61.354 63.158 0.00 0.00 0.00 3.09
91 92 1.141234 GAGGGGGAACGACGCTAAG 59.859 63.158 0.00 0.00 0.00 2.18
92 93 2.510918 GGGGGAACGACGCTAAGC 60.511 66.667 0.00 0.00 0.00 3.09
93 94 2.263540 GGGGAACGACGCTAAGCA 59.736 61.111 0.00 0.00 0.00 3.91
94 95 1.153429 GGGGAACGACGCTAAGCAT 60.153 57.895 0.00 0.00 0.00 3.79
95 96 1.152383 GGGGAACGACGCTAAGCATC 61.152 60.000 0.00 0.00 0.00 3.91
99 100 3.682315 CGACGCTAAGCATCGCCG 61.682 66.667 0.00 0.00 37.45 6.46
100 101 3.330853 GACGCTAAGCATCGCCGG 61.331 66.667 0.00 0.00 0.00 6.13
101 102 4.143333 ACGCTAAGCATCGCCGGT 62.143 61.111 1.90 0.00 0.00 5.28
102 103 3.630148 CGCTAAGCATCGCCGGTG 61.630 66.667 9.28 9.28 0.00 4.94
103 104 3.941836 GCTAAGCATCGCCGGTGC 61.942 66.667 15.87 15.87 42.81 5.01
104 105 2.511373 CTAAGCATCGCCGGTGCA 60.511 61.111 25.81 3.29 44.87 4.57
105 106 2.511373 TAAGCATCGCCGGTGCAG 60.511 61.111 25.81 9.84 44.87 4.41
106 107 2.906182 CTAAGCATCGCCGGTGCAGA 62.906 60.000 25.81 10.59 44.87 4.26
107 108 2.906182 TAAGCATCGCCGGTGCAGAG 62.906 60.000 25.81 5.09 44.87 3.35
113 114 4.479993 GCCGGTGCAGAGCCTGAT 62.480 66.667 1.90 0.00 37.47 2.90
114 115 3.094062 GCCGGTGCAGAGCCTGATA 62.094 63.158 1.90 0.00 37.47 2.15
115 116 1.522092 CCGGTGCAGAGCCTGATAA 59.478 57.895 6.40 0.00 32.44 1.75
116 117 0.811616 CCGGTGCAGAGCCTGATAAC 60.812 60.000 6.40 1.89 32.44 1.89
117 118 1.148157 CGGTGCAGAGCCTGATAACG 61.148 60.000 6.40 5.09 32.44 3.18
118 119 0.811616 GGTGCAGAGCCTGATAACGG 60.812 60.000 6.40 0.00 32.44 4.44
119 120 0.175760 GTGCAGAGCCTGATAACGGA 59.824 55.000 6.40 0.00 32.44 4.69
120 121 0.175760 TGCAGAGCCTGATAACGGAC 59.824 55.000 6.40 0.00 32.44 4.79
121 122 0.461961 GCAGAGCCTGATAACGGACT 59.538 55.000 6.40 0.00 32.44 3.85
122 123 1.681793 GCAGAGCCTGATAACGGACTA 59.318 52.381 6.40 0.00 32.44 2.59
123 124 2.100916 GCAGAGCCTGATAACGGACTAA 59.899 50.000 6.40 0.00 32.44 2.24
124 125 3.243907 GCAGAGCCTGATAACGGACTAAT 60.244 47.826 6.40 0.00 32.44 1.73
125 126 4.302455 CAGAGCCTGATAACGGACTAATG 58.698 47.826 0.00 0.00 32.44 1.90
126 127 3.961408 AGAGCCTGATAACGGACTAATGT 59.039 43.478 0.00 0.00 0.00 2.71
127 128 4.038162 AGAGCCTGATAACGGACTAATGTC 59.962 45.833 0.00 0.00 42.22 3.06
128 129 3.961408 AGCCTGATAACGGACTAATGTCT 59.039 43.478 0.00 0.00 42.54 3.41
129 130 4.406003 AGCCTGATAACGGACTAATGTCTT 59.594 41.667 0.00 0.00 42.54 3.01
130 131 4.745620 GCCTGATAACGGACTAATGTCTTC 59.254 45.833 0.00 0.00 42.54 2.87
131 132 5.681437 GCCTGATAACGGACTAATGTCTTCA 60.681 44.000 0.00 0.00 42.54 3.02
132 133 5.749109 CCTGATAACGGACTAATGTCTTCAC 59.251 44.000 0.00 0.00 42.54 3.18
133 134 5.657474 TGATAACGGACTAATGTCTTCACC 58.343 41.667 0.00 0.00 42.54 4.02
134 135 5.421056 TGATAACGGACTAATGTCTTCACCT 59.579 40.000 0.00 0.00 42.54 4.00
135 136 3.594603 ACGGACTAATGTCTTCACCTG 57.405 47.619 0.00 0.00 42.54 4.00
136 137 2.233922 ACGGACTAATGTCTTCACCTGG 59.766 50.000 0.00 0.00 42.54 4.45
137 138 2.496070 CGGACTAATGTCTTCACCTGGA 59.504 50.000 0.00 0.00 42.54 3.86
138 139 3.676324 CGGACTAATGTCTTCACCTGGAC 60.676 52.174 0.00 0.00 42.54 4.02
139 140 3.369576 GGACTAATGTCTTCACCTGGACC 60.370 52.174 0.00 0.00 42.54 4.46
140 141 3.515901 GACTAATGTCTTCACCTGGACCT 59.484 47.826 0.00 0.00 39.94 3.85
141 142 4.684724 ACTAATGTCTTCACCTGGACCTA 58.315 43.478 0.00 0.00 0.00 3.08
142 143 5.281314 ACTAATGTCTTCACCTGGACCTAT 58.719 41.667 0.00 0.00 0.00 2.57
143 144 4.494091 AATGTCTTCACCTGGACCTATG 57.506 45.455 0.00 0.00 0.00 2.23
144 145 1.555075 TGTCTTCACCTGGACCTATGC 59.445 52.381 0.00 0.00 0.00 3.14
145 146 1.134371 GTCTTCACCTGGACCTATGCC 60.134 57.143 0.00 0.00 0.00 4.40
146 147 0.911769 CTTCACCTGGACCTATGCCA 59.088 55.000 0.00 0.00 0.00 4.92
147 148 0.618458 TTCACCTGGACCTATGCCAC 59.382 55.000 0.00 0.00 0.00 5.01
148 149 1.224592 CACCTGGACCTATGCCACC 59.775 63.158 0.00 0.00 0.00 4.61
149 150 2.367202 ACCTGGACCTATGCCACCG 61.367 63.158 0.00 0.00 0.00 4.94
150 151 2.063979 CCTGGACCTATGCCACCGA 61.064 63.158 0.00 0.00 0.00 4.69
151 152 1.443407 CTGGACCTATGCCACCGAG 59.557 63.158 0.00 0.00 0.00 4.63
152 153 1.001120 TGGACCTATGCCACCGAGA 59.999 57.895 0.00 0.00 0.00 4.04
153 154 1.043116 TGGACCTATGCCACCGAGAG 61.043 60.000 0.00 0.00 0.00 3.20
166 167 2.431539 CGAGAGGAAAACCACGACG 58.568 57.895 0.00 0.00 0.00 5.12
167 168 0.039798 CGAGAGGAAAACCACGACGA 60.040 55.000 0.00 0.00 0.00 4.20
168 169 1.416373 GAGAGGAAAACCACGACGAC 58.584 55.000 0.00 0.00 0.00 4.34
169 170 0.318445 AGAGGAAAACCACGACGACG 60.318 55.000 5.58 5.58 45.75 5.12
183 184 3.422655 CGACGACGTCTTCATGTAATCA 58.577 45.455 24.36 0.00 34.56 2.57
184 185 3.478874 CGACGACGTCTTCATGTAATCAG 59.521 47.826 24.36 1.69 34.56 2.90
185 186 3.179830 ACGACGTCTTCATGTAATCAGC 58.820 45.455 14.70 0.00 0.00 4.26
186 187 3.119459 ACGACGTCTTCATGTAATCAGCT 60.119 43.478 14.70 0.00 0.00 4.24
187 188 3.483922 CGACGTCTTCATGTAATCAGCTC 59.516 47.826 14.70 0.00 0.00 4.09
188 189 4.424626 GACGTCTTCATGTAATCAGCTCA 58.575 43.478 8.70 0.00 0.00 4.26
189 190 4.428209 ACGTCTTCATGTAATCAGCTCAG 58.572 43.478 0.00 0.00 0.00 3.35
190 191 4.158579 ACGTCTTCATGTAATCAGCTCAGA 59.841 41.667 0.00 0.00 0.00 3.27
191 192 4.502282 CGTCTTCATGTAATCAGCTCAGAC 59.498 45.833 0.00 0.00 0.00 3.51
192 193 5.414360 GTCTTCATGTAATCAGCTCAGACA 58.586 41.667 0.00 0.00 0.00 3.41
193 194 5.871524 GTCTTCATGTAATCAGCTCAGACAA 59.128 40.000 0.00 0.00 0.00 3.18
194 195 5.871524 TCTTCATGTAATCAGCTCAGACAAC 59.128 40.000 0.00 0.00 0.00 3.32
195 196 4.176271 TCATGTAATCAGCTCAGACAACG 58.824 43.478 0.00 0.00 0.00 4.10
196 197 2.337583 TGTAATCAGCTCAGACAACGC 58.662 47.619 0.00 0.00 0.00 4.84
197 198 1.661112 GTAATCAGCTCAGACAACGCC 59.339 52.381 0.00 0.00 0.00 5.68
198 199 0.035317 AATCAGCTCAGACAACGCCA 59.965 50.000 0.00 0.00 0.00 5.69
199 200 0.251354 ATCAGCTCAGACAACGCCAT 59.749 50.000 0.00 0.00 0.00 4.40
200 201 0.671472 TCAGCTCAGACAACGCCATG 60.671 55.000 0.00 0.00 0.00 3.66
201 202 0.952497 CAGCTCAGACAACGCCATGT 60.952 55.000 0.00 0.00 35.90 3.21
206 207 3.047280 GACAACGCCATGTCCGCA 61.047 61.111 5.44 0.00 43.11 5.69
207 208 3.027170 GACAACGCCATGTCCGCAG 62.027 63.158 5.44 0.00 43.11 5.18
208 209 4.465512 CAACGCCATGTCCGCAGC 62.466 66.667 3.27 0.00 0.00 5.25
211 212 4.529219 CGCCATGTCCGCAGCCTA 62.529 66.667 0.00 0.00 0.00 3.93
212 213 2.124736 GCCATGTCCGCAGCCTAA 60.125 61.111 0.00 0.00 0.00 2.69
213 214 1.748879 GCCATGTCCGCAGCCTAAA 60.749 57.895 0.00 0.00 0.00 1.85
214 215 1.718757 GCCATGTCCGCAGCCTAAAG 61.719 60.000 0.00 0.00 0.00 1.85
215 216 1.718757 CCATGTCCGCAGCCTAAAGC 61.719 60.000 0.00 0.00 44.25 3.51
232 233 8.175649 GCCTAAAGCATAGATTCGATACTTAC 57.824 38.462 0.00 0.00 42.97 2.34
233 234 7.813148 GCCTAAAGCATAGATTCGATACTTACA 59.187 37.037 0.00 0.00 42.97 2.41
234 235 9.347934 CCTAAAGCATAGATTCGATACTTACAG 57.652 37.037 0.00 0.00 0.00 2.74
237 238 6.616947 AGCATAGATTCGATACTTACAGAGC 58.383 40.000 0.00 0.00 0.00 4.09
238 239 6.432783 AGCATAGATTCGATACTTACAGAGCT 59.567 38.462 0.00 0.00 0.00 4.09
239 240 6.745450 GCATAGATTCGATACTTACAGAGCTC 59.255 42.308 5.27 5.27 0.00 4.09
240 241 7.361713 GCATAGATTCGATACTTACAGAGCTCT 60.362 40.741 11.45 11.45 0.00 4.09
249 250 3.459965 CAGAGCTCTGCCTCGGCT 61.460 66.667 29.79 0.00 42.51 5.52
251 252 4.219999 GAGCTCTGCCTCGGCTCC 62.220 72.222 6.43 0.00 44.46 4.70
253 254 4.828925 GCTCTGCCTCGGCTCCAC 62.829 72.222 9.65 0.00 42.51 4.02
254 255 3.385384 CTCTGCCTCGGCTCCACA 61.385 66.667 9.65 0.00 42.51 4.17
255 256 2.922503 TCTGCCTCGGCTCCACAA 60.923 61.111 9.65 0.00 42.51 3.33
256 257 2.435586 CTGCCTCGGCTCCACAAG 60.436 66.667 9.65 0.00 42.51 3.16
266 267 3.140576 CTCCACAAGCAGAGCTCTG 57.859 57.895 34.82 34.82 46.40 3.35
267 268 0.321021 CTCCACAAGCAGAGCTCTGT 59.679 55.000 37.25 24.33 45.45 3.41
268 269 1.547820 CTCCACAAGCAGAGCTCTGTA 59.452 52.381 37.25 17.34 45.45 2.74
269 270 1.970640 TCCACAAGCAGAGCTCTGTAA 59.029 47.619 37.25 16.89 45.45 2.41
270 271 2.028658 TCCACAAGCAGAGCTCTGTAAG 60.029 50.000 37.25 28.75 45.45 2.34
271 272 2.028658 CCACAAGCAGAGCTCTGTAAGA 60.029 50.000 37.25 0.00 45.45 2.10
272 273 2.992543 CACAAGCAGAGCTCTGTAAGAC 59.007 50.000 37.25 23.67 45.45 3.01
273 274 2.896685 ACAAGCAGAGCTCTGTAAGACT 59.103 45.455 37.25 25.29 45.45 3.24
274 275 3.252400 CAAGCAGAGCTCTGTAAGACTG 58.748 50.000 37.25 23.03 45.45 3.51
275 276 2.524306 AGCAGAGCTCTGTAAGACTGT 58.476 47.619 37.25 14.49 45.45 3.55
276 277 3.691575 AGCAGAGCTCTGTAAGACTGTA 58.308 45.455 37.25 0.00 45.45 2.74
277 278 4.082845 AGCAGAGCTCTGTAAGACTGTAA 58.917 43.478 37.25 0.00 45.45 2.41
278 279 4.082463 AGCAGAGCTCTGTAAGACTGTAAC 60.082 45.833 37.25 20.00 45.45 2.50
279 280 4.739195 CAGAGCTCTGTAAGACTGTAACC 58.261 47.826 31.71 0.00 38.67 2.85
280 281 3.440872 AGAGCTCTGTAAGACTGTAACCG 59.559 47.826 17.42 0.00 38.67 4.44
281 282 3.155501 AGCTCTGTAAGACTGTAACCGT 58.844 45.455 0.00 0.00 38.67 4.83
282 283 4.330250 AGCTCTGTAAGACTGTAACCGTA 58.670 43.478 0.00 0.00 38.67 4.02
283 284 4.395542 AGCTCTGTAAGACTGTAACCGTAG 59.604 45.833 0.00 0.00 38.67 3.51
284 285 4.155644 GCTCTGTAAGACTGTAACCGTAGT 59.844 45.833 0.00 0.00 38.67 2.73
285 286 5.673318 GCTCTGTAAGACTGTAACCGTAGTC 60.673 48.000 0.00 0.00 38.67 2.59
286 287 4.697352 TCTGTAAGACTGTAACCGTAGTCC 59.303 45.833 0.00 0.00 43.32 3.85
287 288 4.397420 TGTAAGACTGTAACCGTAGTCCA 58.603 43.478 0.00 0.00 43.32 4.02
288 289 4.826733 TGTAAGACTGTAACCGTAGTCCAA 59.173 41.667 0.00 0.00 43.32 3.53
289 290 3.930634 AGACTGTAACCGTAGTCCAAC 57.069 47.619 0.00 0.00 43.32 3.77
290 291 3.494332 AGACTGTAACCGTAGTCCAACT 58.506 45.455 0.00 0.00 43.32 3.16
291 292 3.893813 AGACTGTAACCGTAGTCCAACTT 59.106 43.478 0.00 0.00 43.32 2.66
292 293 5.072741 AGACTGTAACCGTAGTCCAACTTA 58.927 41.667 0.00 0.00 43.32 2.24
293 294 5.536161 AGACTGTAACCGTAGTCCAACTTAA 59.464 40.000 0.00 0.00 43.32 1.85
294 295 6.040842 AGACTGTAACCGTAGTCCAACTTAAA 59.959 38.462 0.00 0.00 43.32 1.52
295 296 6.218746 ACTGTAACCGTAGTCCAACTTAAAG 58.781 40.000 0.00 0.00 0.00 1.85
296 297 5.540911 TGTAACCGTAGTCCAACTTAAAGG 58.459 41.667 0.00 0.00 0.00 3.11
297 298 3.049708 ACCGTAGTCCAACTTAAAGGC 57.950 47.619 0.00 0.00 0.00 4.35
298 299 2.289882 ACCGTAGTCCAACTTAAAGGCC 60.290 50.000 0.00 0.00 0.00 5.19
299 300 2.289819 CCGTAGTCCAACTTAAAGGCCA 60.290 50.000 5.01 0.00 0.00 5.36
300 301 2.740447 CGTAGTCCAACTTAAAGGCCAC 59.260 50.000 5.01 0.00 0.00 5.01
301 302 2.287977 AGTCCAACTTAAAGGCCACC 57.712 50.000 5.01 0.00 0.00 4.61
302 303 1.497286 AGTCCAACTTAAAGGCCACCA 59.503 47.619 5.01 0.00 0.00 4.17
303 304 1.611977 GTCCAACTTAAAGGCCACCAC 59.388 52.381 5.01 0.00 0.00 4.16
304 305 0.966179 CCAACTTAAAGGCCACCACC 59.034 55.000 5.01 0.00 0.00 4.61
305 306 1.698506 CAACTTAAAGGCCACCACCA 58.301 50.000 5.01 0.00 0.00 4.17
306 307 2.035632 CAACTTAAAGGCCACCACCAA 58.964 47.619 5.01 0.00 0.00 3.67
307 308 1.699730 ACTTAAAGGCCACCACCAAC 58.300 50.000 5.01 0.00 0.00 3.77
308 309 0.966179 CTTAAAGGCCACCACCAACC 59.034 55.000 5.01 0.00 0.00 3.77
309 310 0.824182 TTAAAGGCCACCACCAACCG 60.824 55.000 5.01 0.00 0.00 4.44
310 311 1.706995 TAAAGGCCACCACCAACCGA 61.707 55.000 5.01 0.00 0.00 4.69
311 312 3.785122 AAGGCCACCACCAACCGAC 62.785 63.158 5.01 0.00 0.00 4.79
313 314 4.572571 GCCACCACCAACCGACCA 62.573 66.667 0.00 0.00 0.00 4.02
314 315 2.281484 CCACCACCAACCGACCAG 60.281 66.667 0.00 0.00 0.00 4.00
315 316 2.508928 CACCACCAACCGACCAGT 59.491 61.111 0.00 0.00 0.00 4.00
316 317 1.891919 CACCACCAACCGACCAGTG 60.892 63.158 0.00 0.00 0.00 3.66
317 318 2.978010 CCACCAACCGACCAGTGC 60.978 66.667 0.00 0.00 0.00 4.40
318 319 2.978010 CACCAACCGACCAGTGCC 60.978 66.667 0.00 0.00 0.00 5.01
319 320 4.265056 ACCAACCGACCAGTGCCC 62.265 66.667 0.00 0.00 0.00 5.36
326 327 4.468689 GACCAGTGCCCCGCCTAC 62.469 72.222 0.00 0.00 0.00 3.18
328 329 4.778143 CCAGTGCCCCGCCTACAC 62.778 72.222 0.00 0.00 34.48 2.90
344 345 2.963371 ACGCCCGTGAGAAGAGAC 59.037 61.111 0.00 0.00 0.00 3.36
345 346 2.182030 CGCCCGTGAGAAGAGACC 59.818 66.667 0.00 0.00 0.00 3.85
346 347 2.182030 GCCCGTGAGAAGAGACCG 59.818 66.667 0.00 0.00 0.00 4.79
347 348 2.182030 CCCGTGAGAAGAGACCGC 59.818 66.667 0.00 0.00 0.00 5.68
348 349 2.182030 CCGTGAGAAGAGACCGCC 59.818 66.667 0.00 0.00 0.00 6.13
349 350 2.202492 CGTGAGAAGAGACCGCCG 60.202 66.667 0.00 0.00 0.00 6.46
350 351 2.182030 GTGAGAAGAGACCGCCGG 59.818 66.667 0.00 0.00 0.00 6.13
351 352 2.035155 TGAGAAGAGACCGCCGGA 59.965 61.111 11.71 0.00 0.00 5.14
352 353 2.341101 TGAGAAGAGACCGCCGGAC 61.341 63.158 11.71 2.80 0.00 4.79
353 354 2.282958 AGAAGAGACCGCCGGACA 60.283 61.111 11.71 0.00 0.00 4.02
354 355 2.126031 GAAGAGACCGCCGGACAC 60.126 66.667 11.71 1.48 0.00 3.67
355 356 3.644399 GAAGAGACCGCCGGACACC 62.644 68.421 11.71 0.00 0.00 4.16
356 357 4.988716 AGAGACCGCCGGACACCA 62.989 66.667 11.71 0.00 0.00 4.17
357 358 4.736896 GAGACCGCCGGACACCAC 62.737 72.222 11.71 0.00 0.00 4.16
365 366 4.386951 CGGACACCACCGCCATCA 62.387 66.667 0.00 0.00 46.20 3.07
366 367 2.272146 GGACACCACCGCCATCAT 59.728 61.111 0.00 0.00 0.00 2.45
367 368 1.819632 GGACACCACCGCCATCATC 60.820 63.158 0.00 0.00 0.00 2.92
368 369 1.078497 GACACCACCGCCATCATCA 60.078 57.895 0.00 0.00 0.00 3.07
369 370 0.464373 GACACCACCGCCATCATCAT 60.464 55.000 0.00 0.00 0.00 2.45
370 371 0.464373 ACACCACCGCCATCATCATC 60.464 55.000 0.00 0.00 0.00 2.92
371 372 1.149174 ACCACCGCCATCATCATCC 59.851 57.895 0.00 0.00 0.00 3.51
372 373 1.962822 CCACCGCCATCATCATCCG 60.963 63.158 0.00 0.00 0.00 4.18
373 374 2.281070 ACCGCCATCATCATCCGC 60.281 61.111 0.00 0.00 0.00 5.54
374 375 2.031616 CCGCCATCATCATCCGCT 59.968 61.111 0.00 0.00 0.00 5.52
375 376 2.322830 CCGCCATCATCATCCGCTG 61.323 63.158 0.00 0.00 0.00 5.18
382 383 3.419580 ATCATCCGCTGCCCCCAA 61.420 61.111 0.00 0.00 0.00 4.12
400 401 1.134438 AACCCTCACCTCAGGAACCC 61.134 60.000 0.00 0.00 35.20 4.11
401 402 2.660064 CCCTCACCTCAGGAACCCG 61.660 68.421 0.00 0.00 35.20 5.28
402 403 1.913762 CCTCACCTCAGGAACCCGT 60.914 63.158 0.00 0.00 35.20 5.28
403 404 1.481056 CCTCACCTCAGGAACCCGTT 61.481 60.000 0.00 0.00 35.20 4.44
404 405 0.320771 CTCACCTCAGGAACCCGTTG 60.321 60.000 0.00 0.00 0.00 4.10
405 406 1.302511 CACCTCAGGAACCCGTTGG 60.303 63.158 0.00 0.00 37.80 3.77
423 424 4.408821 GCGCCAGATCCACCACCA 62.409 66.667 0.00 0.00 0.00 4.17
427 428 2.001803 CCAGATCCACCACCACCAT 58.998 57.895 0.00 0.00 0.00 3.55
429 430 1.141657 CCAGATCCACCACCACCATAG 59.858 57.143 0.00 0.00 0.00 2.23
430 431 0.839946 AGATCCACCACCACCATAGC 59.160 55.000 0.00 0.00 0.00 2.97
433 434 0.546507 TCCACCACCACCATAGCTCA 60.547 55.000 0.00 0.00 0.00 4.26
436 437 1.224592 CCACCACCATAGCTCACCC 59.775 63.158 0.00 0.00 0.00 4.61
439 440 0.341961 ACCACCATAGCTCACCCCTA 59.658 55.000 0.00 0.00 0.00 3.53
442 443 2.050144 CACCATAGCTCACCCCTACAT 58.950 52.381 0.00 0.00 0.00 2.29
448 449 0.912486 GCTCACCCCTACATGAACCT 59.088 55.000 0.00 0.00 0.00 3.50
452 453 1.846439 CACCCCTACATGAACCTCCAT 59.154 52.381 0.00 0.00 0.00 3.41
459 460 3.744940 ACATGAACCTCCATCAACCAT 57.255 42.857 0.00 0.00 0.00 3.55
464 465 2.484062 CCTCCATCAACCATGCCGC 61.484 63.158 0.00 0.00 0.00 6.53
471 472 3.694538 AACCATGCCGCCCAAAGC 61.695 61.111 0.00 0.00 38.52 3.51
482 483 4.047059 CCAAAGCGCTGCCCACTG 62.047 66.667 12.58 1.62 0.00 3.66
499 500 4.779475 GCACCTACATGCGCCTAT 57.221 55.556 4.18 0.00 35.50 2.57
506 507 0.463620 TACATGCGCCTATCAGCACA 59.536 50.000 4.18 0.00 46.83 4.57
514 515 4.075854 TATCAGCACACCCGCGCA 62.076 61.111 8.75 0.00 36.85 6.09
519 520 4.341502 GCACACCCGCGCATTGTT 62.342 61.111 8.75 0.00 0.00 2.83
522 523 4.459331 CACCCGCGCATTGTTCCG 62.459 66.667 8.75 0.00 0.00 4.30
526 527 4.397090 CGCGCATTGTTCCGCCAA 62.397 61.111 8.75 0.00 46.88 4.52
527 528 2.504681 GCGCATTGTTCCGCCAAG 60.505 61.111 0.30 0.00 44.10 3.61
533 534 3.860930 TTGTTCCGCCAAGGCTCCC 62.861 63.158 9.73 0.00 40.77 4.30
534 535 4.344865 GTTCCGCCAAGGCTCCCA 62.345 66.667 9.73 0.00 40.77 4.37
558 559 4.564110 GCCCCACGTCATAGCCCC 62.564 72.222 0.00 0.00 0.00 5.80
562 563 2.063979 CCACGTCATAGCCCCAGGA 61.064 63.158 0.00 0.00 0.00 3.86
630 638 2.747855 CTCCGGTGGAGCTTTGCC 60.748 66.667 0.00 0.00 43.29 4.52
639 647 1.303155 GAGCTTTGCCTGGCTGAGT 60.303 57.895 21.03 8.13 39.05 3.41
640 648 0.892814 GAGCTTTGCCTGGCTGAGTT 60.893 55.000 21.03 14.71 39.05 3.01
642 650 0.892814 GCTTTGCCTGGCTGAGTTCT 60.893 55.000 21.03 0.00 0.00 3.01
650 658 2.817396 GCTGAGTTCTCTGGCGGC 60.817 66.667 0.00 0.00 0.00 6.53
667 675 1.596203 GCGGCGGTATAGGGTTTCC 60.596 63.158 9.78 0.00 0.00 3.13
677 685 4.426313 GGGTTTCCTCCCCGCCAG 62.426 72.222 0.00 0.00 41.54 4.85
696 704 4.778143 GCGGGAGGTCAATGCGGT 62.778 66.667 0.00 0.00 0.00 5.68
709 717 0.261991 ATGCGGTAGGAAGAGGAGGA 59.738 55.000 0.00 0.00 0.00 3.71
715 723 2.380941 GTAGGAAGAGGAGGAGGACAC 58.619 57.143 0.00 0.00 0.00 3.67
731 739 2.279918 ACCGTCGTGTTGCTGGAC 60.280 61.111 0.00 0.00 0.00 4.02
735 743 1.557443 CGTCGTGTTGCTGGACCTTC 61.557 60.000 0.00 0.00 0.00 3.46
743 752 0.694771 TGCTGGACCTTCTGCATCTT 59.305 50.000 0.00 0.00 36.83 2.40
757 766 4.344390 TCTGCATCTTATCTCAGAGTGCAT 59.656 41.667 10.63 0.00 37.03 3.96
759 768 3.674281 GCATCTTATCTCAGAGTGCATCG 59.326 47.826 0.00 0.00 32.23 3.84
762 771 6.624642 GCATCTTATCTCAGAGTGCATCGATA 60.625 42.308 0.00 0.00 32.23 2.92
772 781 7.975750 TCAGAGTGCATCGATATACTATGTAC 58.024 38.462 23.64 12.19 37.48 2.90
804 813 2.469826 TGCTCAAGTGTGTGAACTACG 58.530 47.619 0.00 0.00 0.00 3.51
807 816 3.669122 GCTCAAGTGTGTGAACTACGTAG 59.331 47.826 20.97 20.97 0.00 3.51
831 840 8.391075 AGACAAATTCGTAGAAAAATCAAGGA 57.609 30.769 0.00 0.00 45.90 3.36
875 885 9.740239 ACATGTACATATATTCGACGTTTTACT 57.260 29.630 8.32 0.00 0.00 2.24
876 886 9.989394 CATGTACATATATTCGACGTTTTACTG 57.011 33.333 8.32 0.00 0.00 2.74
877 887 9.740239 ATGTACATATATTCGACGTTTTACTGT 57.260 29.630 6.56 0.00 0.00 3.55
878 888 9.012448 TGTACATATATTCGACGTTTTACTGTG 57.988 33.333 0.00 0.00 0.00 3.66
879 889 9.013490 GTACATATATTCGACGTTTTACTGTGT 57.987 33.333 0.00 0.00 0.00 3.72
880 890 8.470040 ACATATATTCGACGTTTTACTGTGTT 57.530 30.769 0.00 0.00 0.00 3.32
881 891 8.377681 ACATATATTCGACGTTTTACTGTGTTG 58.622 33.333 0.00 0.00 0.00 3.33
882 892 3.307339 TTCGACGTTTTACTGTGTTGC 57.693 42.857 0.00 0.00 0.00 4.17
883 893 1.255859 TCGACGTTTTACTGTGTTGCG 59.744 47.619 0.00 0.00 0.00 4.85
884 894 1.005766 CGACGTTTTACTGTGTTGCGT 60.006 47.619 0.00 0.00 0.00 5.24
885 895 2.216037 CGACGTTTTACTGTGTTGCGTA 59.784 45.455 0.00 0.00 0.00 4.42
892 902 5.933187 TTTACTGTGTTGCGTATCATTGT 57.067 34.783 0.00 0.00 0.00 2.71
895 905 5.530519 ACTGTGTTGCGTATCATTGTAAG 57.469 39.130 0.00 0.00 0.00 2.34
901 911 7.748683 TGTGTTGCGTATCATTGTAAGATTTTC 59.251 33.333 0.00 0.00 0.00 2.29
903 913 8.511321 TGTTGCGTATCATTGTAAGATTTTCTT 58.489 29.630 0.00 0.00 40.35 2.52
905 915 8.894409 TGCGTATCATTGTAAGATTTTCTTTG 57.106 30.769 0.00 0.00 37.89 2.77
936 946 4.733405 GTGTACTTTTTCAAGGAGTTTGCG 59.267 41.667 0.00 0.00 36.70 4.85
940 950 5.758924 ACTTTTTCAAGGAGTTTGCGTATC 58.241 37.500 0.00 0.00 36.70 2.24
945 955 7.499321 TTTCAAGGAGTTTGCGTATCTTTAA 57.501 32.000 0.00 0.00 36.70 1.52
983 993 6.829811 TGGTATATATGATGATTGCCATGTGG 59.170 38.462 0.00 0.00 35.17 4.17
996 1006 1.739466 CCATGTGGATTTCAGTGGTCG 59.261 52.381 0.00 0.00 37.39 4.79
1097 1107 5.362556 TTCTTGCTCATGTTTGCTAGAAC 57.637 39.130 20.22 0.00 42.59 3.01
1169 1179 1.117994 CTGCTGGCTGACTCCATAGA 58.882 55.000 0.00 0.00 35.22 1.98
1227 1237 1.985159 TCCCATGAGTACCAACAGCTT 59.015 47.619 0.00 0.00 0.00 3.74
1311 1321 2.575735 TGCCATGGAAGACAACCATCTA 59.424 45.455 18.40 0.00 45.00 1.98
1348 1358 2.121992 CTCTCTGGTTGTGCAGGCCT 62.122 60.000 0.00 0.00 0.00 5.19
1380 1390 9.167239 GTAGCTTATGTCTTGTACAAGTATACG 57.833 37.037 29.83 24.47 42.70 3.06
1409 1419 2.436646 GACCATGGTCACAGGCGG 60.437 66.667 35.21 0.00 44.02 6.13
1473 1483 0.830648 TATGGGCGCTTAAGTCAGCT 59.169 50.000 7.64 0.00 37.68 4.24
1506 1516 5.568620 ACATCAGTAACCTCCTTGAAAGT 57.431 39.130 0.00 0.00 0.00 2.66
1515 1525 5.648330 ACCTCCTTGAAAGTAGGAAGTTT 57.352 39.130 8.54 0.00 41.13 2.66
1539 1549 4.067896 GAGAGGCTCAACAACAAGATCAA 58.932 43.478 18.26 0.00 0.00 2.57
1544 1554 5.098211 GGCTCAACAACAAGATCAAATAGC 58.902 41.667 0.00 0.00 0.00 2.97
1564 1580 1.525995 CCTTACCGCCCGCATGAAT 60.526 57.895 0.00 0.00 0.00 2.57
1565 1581 1.101049 CCTTACCGCCCGCATGAATT 61.101 55.000 0.00 0.00 0.00 2.17
1582 1598 1.856539 ATTGTGGGACCAGGCAGAGG 61.857 60.000 0.00 0.00 0.00 3.69
1713 1729 6.785963 CCATAAGGGTAGTAGTTGATAAGGGA 59.214 42.308 0.00 0.00 0.00 4.20
1715 1731 6.749036 AAGGGTAGTAGTTGATAAGGGATG 57.251 41.667 0.00 0.00 0.00 3.51
1716 1732 5.789535 AGGGTAGTAGTTGATAAGGGATGT 58.210 41.667 0.00 0.00 0.00 3.06
1717 1733 5.602978 AGGGTAGTAGTTGATAAGGGATGTG 59.397 44.000 0.00 0.00 0.00 3.21
1721 1737 2.632377 AGTTGATAAGGGATGTGCGTG 58.368 47.619 0.00 0.00 0.00 5.34
1746 1762 3.008330 GTTGATTGAGATGCAGCTGTCT 58.992 45.455 10.40 11.26 0.00 3.41
1761 1777 3.762288 AGCTGTCTTTGATGCATGATGTT 59.238 39.130 2.46 0.00 0.00 2.71
1762 1778 4.219944 AGCTGTCTTTGATGCATGATGTTT 59.780 37.500 2.46 0.00 0.00 2.83
1777 1793 3.701542 TGATGTTTTGTACACCAAGGCAA 59.298 39.130 0.00 0.00 40.19 4.52
1786 1802 1.303317 ACCAAGGCAACCGTGATCC 60.303 57.895 0.83 0.00 35.05 3.36
1851 1867 3.881688 CCATCATCACCACATTCTTCCTC 59.118 47.826 0.00 0.00 0.00 3.71
1865 1881 2.567169 TCTTCCTCTTTCGATCCAGCAA 59.433 45.455 0.00 0.00 0.00 3.91
1869 1885 2.636830 CTCTTTCGATCCAGCAATGGT 58.363 47.619 0.00 0.00 0.00 3.55
1871 1887 3.531538 TCTTTCGATCCAGCAATGGTAC 58.468 45.455 0.00 0.00 0.00 3.34
1917 1933 4.729086 GTCATCGTCACGTACATCTTACTG 59.271 45.833 0.00 0.00 0.00 2.74
1941 1957 1.622725 GGGGCTTTCCTCCTAGAGACA 60.623 57.143 0.00 0.00 35.33 3.41
2016 2032 1.146566 GGAAGATGGGATTGGCTCCAT 59.853 52.381 0.00 0.00 46.98 3.41
2075 2103 5.936956 CAGCAGAAAGAAGTAGAAGATGGTT 59.063 40.000 0.00 0.00 0.00 3.67
2092 2120 2.714250 TGGTTAGGTTCCATTGGACAGT 59.286 45.455 4.45 0.00 0.00 3.55
2100 2128 5.072600 AGGTTCCATTGGACAGTACAAGTTA 59.927 40.000 4.45 0.00 0.00 2.24
2101 2129 5.766174 GGTTCCATTGGACAGTACAAGTTAA 59.234 40.000 4.45 0.00 0.00 2.01
2105 2133 5.415701 CCATTGGACAGTACAAGTTAATGCT 59.584 40.000 4.08 0.00 0.00 3.79
2113 2141 2.440409 ACAAGTTAATGCTGCTGGAGG 58.560 47.619 0.00 0.00 0.00 4.30
2122 2150 2.204136 TGCTGGAGGTGGATGGGT 60.204 61.111 0.00 0.00 0.00 4.51
2126 2154 0.035056 CTGGAGGTGGATGGGTCAAC 60.035 60.000 0.00 0.00 0.00 3.18
2139 2167 1.528161 GGGTCAACCGTTCAAGTTACG 59.472 52.381 0.00 0.00 38.67 3.18
2147 2175 3.243975 ACCGTTCAAGTTACGATTGGACT 60.244 43.478 0.00 0.00 41.33 3.85
2149 2177 3.059044 CGTTCAAGTTACGATTGGACTCG 59.941 47.826 0.00 0.00 41.33 4.18
2154 2182 2.159366 AGTTACGATTGGACTCGAGCAG 60.159 50.000 13.61 0.00 41.12 4.24
2155 2183 0.100682 TACGATTGGACTCGAGCAGC 59.899 55.000 13.61 1.83 41.12 5.25
2162 2190 1.067142 TGGACTCGAGCAGCGTAATTT 60.067 47.619 13.61 0.00 41.80 1.82
2169 2197 2.651703 CGAGCAGCGTAATTTGTTTGTG 59.348 45.455 0.00 0.00 34.64 3.33
2173 2201 2.150985 CAGCGTAATTTGTTTGTGTGCG 59.849 45.455 0.00 0.00 0.00 5.34
2199 2227 1.067295 TGTGGAAGAAGATGCACCCT 58.933 50.000 0.00 0.00 40.53 4.34
2241 2269 5.422331 AGATGCTACTAAGAAGTTGGTGCTA 59.578 40.000 0.00 0.00 37.15 3.49
2250 2278 7.939588 ACTAAGAAGTTGGTGCTAAAAGAGATT 59.060 33.333 0.00 0.00 29.00 2.40
2252 2280 6.299141 AGAAGTTGGTGCTAAAAGAGATTCA 58.701 36.000 0.00 0.00 0.00 2.57
2277 2305 4.626081 GTGGAGGCGTGTGCAGGT 62.626 66.667 0.00 0.00 45.35 4.00
2294 2322 5.591877 GTGCAGGTAAAGAGGAAATCATGAT 59.408 40.000 1.18 1.18 0.00 2.45
2307 2335 5.220931 GGAAATCATGATGAGTTACAGTGGC 60.221 44.000 12.55 0.00 35.52 5.01
2331 2359 1.729276 CGCGTTGAATCCATGGCAT 59.271 52.632 6.96 0.00 0.00 4.40
2377 2405 4.460731 TGAACACGGGCATTGATTTTGATA 59.539 37.500 0.00 0.00 0.00 2.15
2420 2448 5.713792 TTTGCCACGGAAATTTTCATCTA 57.286 34.783 11.09 0.00 0.00 1.98
2424 2452 5.298276 TGCCACGGAAATTTTCATCTATACC 59.702 40.000 11.09 0.00 0.00 2.73
2476 2516 3.449018 CAGGGAGCTGTCTAACTACATGT 59.551 47.826 2.69 2.69 0.00 3.21
2508 2548 1.539827 GTTGAACGGCCTTACATGCTT 59.460 47.619 0.00 0.00 0.00 3.91
2511 2551 0.679960 AACGGCCTTACATGCTTCCC 60.680 55.000 0.00 0.00 0.00 3.97
2540 2580 1.447317 CGGCCAGGATTGTATGCCAC 61.447 60.000 2.24 0.00 42.27 5.01
2542 2582 1.027357 GCCAGGATTGTATGCCACTG 58.973 55.000 0.00 0.00 0.00 3.66
2552 2592 2.093500 TGTATGCCACTGCTGAAGTAGG 60.093 50.000 0.00 0.00 36.83 3.18
2569 2609 5.101254 AGTAGGATATGTGGGATTGGGTA 57.899 43.478 0.00 0.00 0.00 3.69
2571 2611 5.548056 AGTAGGATATGTGGGATTGGGTAAG 59.452 44.000 0.00 0.00 0.00 2.34
2574 2614 1.006813 ATGTGGGATTGGGTAAGCCA 58.993 50.000 0.00 0.00 44.20 4.75
2576 2616 0.395724 GTGGGATTGGGTAAGCCAGG 60.396 60.000 0.00 0.00 44.20 4.45
2578 2618 0.395724 GGGATTGGGTAAGCCAGGTG 60.396 60.000 0.00 0.00 44.20 4.00
2579 2619 1.037579 GGATTGGGTAAGCCAGGTGC 61.038 60.000 0.00 0.00 41.99 5.01
2602 2693 4.551603 CGAAGAATCTCATTGAACGCATCC 60.552 45.833 0.00 0.00 0.00 3.51
2619 2710 1.620822 TCCAAAGAAAGGAGCTTGGC 58.379 50.000 0.00 0.00 0.00 4.52
2817 3499 1.990563 GGTGAGTTCATTACCGTCGTG 59.009 52.381 0.00 0.00 0.00 4.35
2849 3531 1.466856 ACTGCCATGTTCAATCGCAT 58.533 45.000 0.00 0.00 0.00 4.73
2884 3566 2.356135 CATGGTTTAAGGAGGACGTGG 58.644 52.381 0.00 0.00 0.00 4.94
2891 3573 6.156602 TGGTTTAAGGAGGACGTGGATAAATA 59.843 38.462 0.00 0.00 0.00 1.40
2896 3578 4.960469 AGGAGGACGTGGATAAATACTTCA 59.040 41.667 0.00 0.00 0.00 3.02
2909 3591 8.358148 GGATAAATACTTCAGTCCACTATTCGA 58.642 37.037 0.00 0.00 0.00 3.71
2910 3592 9.400638 GATAAATACTTCAGTCCACTATTCGAG 57.599 37.037 0.00 0.00 0.00 4.04
2911 3593 7.406031 AAATACTTCAGTCCACTATTCGAGA 57.594 36.000 0.00 0.00 0.00 4.04
2912 3594 4.705337 ACTTCAGTCCACTATTCGAGAC 57.295 45.455 0.00 0.00 0.00 3.36
2913 3595 4.337145 ACTTCAGTCCACTATTCGAGACT 58.663 43.478 0.00 0.00 40.15 3.24
3264 3946 0.655337 CGATCGCGACGACCGAATTA 60.655 55.000 12.93 0.00 46.76 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.366061 GCTTAATTGTTTTCTTTCTCGGCAAT 59.634 34.615 0.00 0.00 0.00 3.56
2 3 5.009610 AGCTTAATTGTTTTCTTTCTCGGCA 59.990 36.000 0.00 0.00 0.00 5.69
3 4 5.461526 AGCTTAATTGTTTTCTTTCTCGGC 58.538 37.500 0.00 0.00 0.00 5.54
4 5 9.458374 TTTTAGCTTAATTGTTTTCTTTCTCGG 57.542 29.630 0.00 0.00 0.00 4.63
16 17 9.638239 CATGGTGTTGTATTTTAGCTTAATTGT 57.362 29.630 0.00 0.00 0.00 2.71
17 18 9.853555 TCATGGTGTTGTATTTTAGCTTAATTG 57.146 29.630 0.00 0.00 0.00 2.32
18 19 9.855021 GTCATGGTGTTGTATTTTAGCTTAATT 57.145 29.630 0.00 0.00 0.00 1.40
19 20 9.019656 TGTCATGGTGTTGTATTTTAGCTTAAT 57.980 29.630 0.00 0.00 0.00 1.40
20 21 8.293867 GTGTCATGGTGTTGTATTTTAGCTTAA 58.706 33.333 0.00 0.00 0.00 1.85
21 22 7.445707 TGTGTCATGGTGTTGTATTTTAGCTTA 59.554 33.333 0.00 0.00 0.00 3.09
22 23 6.264292 TGTGTCATGGTGTTGTATTTTAGCTT 59.736 34.615 0.00 0.00 0.00 3.74
23 24 5.767665 TGTGTCATGGTGTTGTATTTTAGCT 59.232 36.000 0.00 0.00 0.00 3.32
24 25 5.856455 GTGTGTCATGGTGTTGTATTTTAGC 59.144 40.000 0.00 0.00 0.00 3.09
25 26 6.378582 GGTGTGTCATGGTGTTGTATTTTAG 58.621 40.000 0.00 0.00 0.00 1.85
26 27 5.241949 GGGTGTGTCATGGTGTTGTATTTTA 59.758 40.000 0.00 0.00 0.00 1.52
27 28 4.038642 GGGTGTGTCATGGTGTTGTATTTT 59.961 41.667 0.00 0.00 0.00 1.82
28 29 3.572255 GGGTGTGTCATGGTGTTGTATTT 59.428 43.478 0.00 0.00 0.00 1.40
29 30 3.153919 GGGTGTGTCATGGTGTTGTATT 58.846 45.455 0.00 0.00 0.00 1.89
30 31 2.375174 AGGGTGTGTCATGGTGTTGTAT 59.625 45.455 0.00 0.00 0.00 2.29
31 32 1.771854 AGGGTGTGTCATGGTGTTGTA 59.228 47.619 0.00 0.00 0.00 2.41
32 33 0.550914 AGGGTGTGTCATGGTGTTGT 59.449 50.000 0.00 0.00 0.00 3.32
33 34 2.426522 CTAGGGTGTGTCATGGTGTTG 58.573 52.381 0.00 0.00 0.00 3.33
34 35 1.351017 CCTAGGGTGTGTCATGGTGTT 59.649 52.381 0.00 0.00 0.00 3.32
35 36 0.984230 CCTAGGGTGTGTCATGGTGT 59.016 55.000 0.00 0.00 0.00 4.16
36 37 0.984230 ACCTAGGGTGTGTCATGGTG 59.016 55.000 14.81 0.00 32.98 4.17
37 38 1.276622 GACCTAGGGTGTGTCATGGT 58.723 55.000 14.81 0.00 35.25 3.55
38 39 1.066143 GTGACCTAGGGTGTGTCATGG 60.066 57.143 14.81 0.00 40.75 3.66
39 40 1.066143 GGTGACCTAGGGTGTGTCATG 60.066 57.143 14.81 0.00 40.75 3.07
40 41 1.203313 AGGTGACCTAGGGTGTGTCAT 60.203 52.381 14.81 0.00 40.75 3.06
41 42 0.190069 AGGTGACCTAGGGTGTGTCA 59.810 55.000 14.81 4.16 35.25 3.58
42 43 2.226962 TAGGTGACCTAGGGTGTGTC 57.773 55.000 14.81 1.13 35.25 3.67
43 44 2.537143 CTTAGGTGACCTAGGGTGTGT 58.463 52.381 14.81 0.00 37.42 3.72
44 45 1.207329 GCTTAGGTGACCTAGGGTGTG 59.793 57.143 20.56 6.29 37.42 3.82
45 46 1.078989 AGCTTAGGTGACCTAGGGTGT 59.921 52.381 22.36 5.19 41.27 4.16
46 47 1.757699 GAGCTTAGGTGACCTAGGGTG 59.242 57.143 26.94 12.81 42.51 4.61
47 48 1.343176 GGAGCTTAGGTGACCTAGGGT 60.343 57.143 23.05 23.05 44.55 4.34
48 49 1.343075 TGGAGCTTAGGTGACCTAGGG 60.343 57.143 20.56 14.19 37.42 3.53
49 50 1.757699 GTGGAGCTTAGGTGACCTAGG 59.242 57.143 15.74 15.74 37.42 3.02
50 51 2.457598 TGTGGAGCTTAGGTGACCTAG 58.542 52.381 11.73 7.49 37.42 3.02
51 52 2.615986 TGTGGAGCTTAGGTGACCTA 57.384 50.000 7.39 7.39 34.61 3.08
52 53 1.625818 CTTGTGGAGCTTAGGTGACCT 59.374 52.381 10.00 10.00 37.71 3.85
53 54 1.339151 CCTTGTGGAGCTTAGGTGACC 60.339 57.143 0.00 0.00 34.57 4.02
54 55 1.623811 TCCTTGTGGAGCTTAGGTGAC 59.376 52.381 0.00 0.00 37.46 3.67
55 56 2.024176 TCCTTGTGGAGCTTAGGTGA 57.976 50.000 0.00 0.00 37.46 4.02
65 66 2.221299 CGTTCCCCCTCCTTGTGGA 61.221 63.158 0.00 0.00 40.69 4.02
66 67 2.221299 TCGTTCCCCCTCCTTGTGG 61.221 63.158 0.00 0.00 0.00 4.17
67 68 1.003718 GTCGTTCCCCCTCCTTGTG 60.004 63.158 0.00 0.00 0.00 3.33
68 69 2.580601 CGTCGTTCCCCCTCCTTGT 61.581 63.158 0.00 0.00 0.00 3.16
69 70 2.264794 CGTCGTTCCCCCTCCTTG 59.735 66.667 0.00 0.00 0.00 3.61
70 71 2.793317 TAGCGTCGTTCCCCCTCCTT 62.793 60.000 0.00 0.00 0.00 3.36
71 72 2.793317 TTAGCGTCGTTCCCCCTCCT 62.793 60.000 0.00 0.00 0.00 3.69
72 73 2.294132 CTTAGCGTCGTTCCCCCTCC 62.294 65.000 0.00 0.00 0.00 4.30
73 74 1.141234 CTTAGCGTCGTTCCCCCTC 59.859 63.158 0.00 0.00 0.00 4.30
74 75 3.015312 GCTTAGCGTCGTTCCCCCT 62.015 63.158 0.00 0.00 0.00 4.79
75 76 2.510918 GCTTAGCGTCGTTCCCCC 60.511 66.667 0.00 0.00 0.00 5.40
76 77 1.152383 GATGCTTAGCGTCGTTCCCC 61.152 60.000 10.85 0.00 34.82 4.81
77 78 2.298593 GATGCTTAGCGTCGTTCCC 58.701 57.895 10.85 0.00 34.82 3.97
83 84 3.330853 CCGGCGATGCTTAGCGTC 61.331 66.667 15.82 15.82 40.75 5.19
84 85 4.143333 ACCGGCGATGCTTAGCGT 62.143 61.111 9.30 0.00 0.00 5.07
85 86 3.630148 CACCGGCGATGCTTAGCG 61.630 66.667 9.30 0.00 0.00 4.26
86 87 3.941836 GCACCGGCGATGCTTAGC 61.942 66.667 21.18 0.00 40.08 3.09
87 88 2.511373 TGCACCGGCGATGCTTAG 60.511 61.111 28.53 1.00 45.35 2.18
88 89 2.511373 CTGCACCGGCGATGCTTA 60.511 61.111 28.53 6.99 45.35 3.09
89 90 4.393155 TCTGCACCGGCGATGCTT 62.393 61.111 28.53 0.00 45.35 3.91
90 91 4.827087 CTCTGCACCGGCGATGCT 62.827 66.667 28.53 0.00 45.35 3.79
96 97 2.593468 TTATCAGGCTCTGCACCGGC 62.593 60.000 0.00 0.00 41.68 6.13
97 98 0.811616 GTTATCAGGCTCTGCACCGG 60.812 60.000 0.00 0.00 0.00 5.28
98 99 1.148157 CGTTATCAGGCTCTGCACCG 61.148 60.000 0.00 0.00 0.00 4.94
99 100 0.811616 CCGTTATCAGGCTCTGCACC 60.812 60.000 0.00 0.00 0.00 5.01
100 101 0.175760 TCCGTTATCAGGCTCTGCAC 59.824 55.000 0.00 0.00 0.00 4.57
101 102 0.175760 GTCCGTTATCAGGCTCTGCA 59.824 55.000 0.00 0.00 0.00 4.41
102 103 0.461961 AGTCCGTTATCAGGCTCTGC 59.538 55.000 0.00 0.00 0.00 4.26
103 104 4.202161 ACATTAGTCCGTTATCAGGCTCTG 60.202 45.833 0.00 0.00 0.00 3.35
104 105 3.961408 ACATTAGTCCGTTATCAGGCTCT 59.039 43.478 0.00 0.00 0.00 4.09
105 106 4.038162 AGACATTAGTCCGTTATCAGGCTC 59.962 45.833 0.00 0.00 46.15 4.70
106 107 3.961408 AGACATTAGTCCGTTATCAGGCT 59.039 43.478 0.00 0.00 46.15 4.58
107 108 4.323553 AGACATTAGTCCGTTATCAGGC 57.676 45.455 0.00 0.00 46.15 4.85
108 109 5.749109 GTGAAGACATTAGTCCGTTATCAGG 59.251 44.000 0.00 0.00 46.15 3.86
109 110 5.749109 GGTGAAGACATTAGTCCGTTATCAG 59.251 44.000 0.00 0.00 46.15 2.90
110 111 5.421056 AGGTGAAGACATTAGTCCGTTATCA 59.579 40.000 0.00 0.00 46.15 2.15
111 112 5.749109 CAGGTGAAGACATTAGTCCGTTATC 59.251 44.000 0.00 0.00 46.15 1.75
112 113 5.395324 CCAGGTGAAGACATTAGTCCGTTAT 60.395 44.000 0.00 0.00 46.15 1.89
113 114 4.081862 CCAGGTGAAGACATTAGTCCGTTA 60.082 45.833 0.00 0.00 46.15 3.18
114 115 3.306780 CCAGGTGAAGACATTAGTCCGTT 60.307 47.826 0.00 0.00 46.15 4.44
115 116 2.233922 CCAGGTGAAGACATTAGTCCGT 59.766 50.000 0.00 0.00 46.15 4.69
116 117 2.496070 TCCAGGTGAAGACATTAGTCCG 59.504 50.000 0.00 0.00 46.15 4.79
117 118 3.369576 GGTCCAGGTGAAGACATTAGTCC 60.370 52.174 0.00 0.00 46.15 3.85
118 119 3.515901 AGGTCCAGGTGAAGACATTAGTC 59.484 47.826 0.00 0.00 45.31 2.59
119 120 3.521727 AGGTCCAGGTGAAGACATTAGT 58.478 45.455 0.00 0.00 34.58 2.24
120 121 5.605534 CATAGGTCCAGGTGAAGACATTAG 58.394 45.833 0.00 0.00 34.58 1.73
121 122 4.141711 GCATAGGTCCAGGTGAAGACATTA 60.142 45.833 0.00 0.00 34.58 1.90
122 123 3.370953 GCATAGGTCCAGGTGAAGACATT 60.371 47.826 0.00 0.00 34.58 2.71
123 124 2.171448 GCATAGGTCCAGGTGAAGACAT 59.829 50.000 0.00 0.00 34.58 3.06
124 125 1.555075 GCATAGGTCCAGGTGAAGACA 59.445 52.381 0.00 0.00 34.58 3.41
125 126 1.134371 GGCATAGGTCCAGGTGAAGAC 60.134 57.143 0.00 0.00 0.00 3.01
126 127 1.204146 GGCATAGGTCCAGGTGAAGA 58.796 55.000 0.00 0.00 0.00 2.87
127 128 0.911769 TGGCATAGGTCCAGGTGAAG 59.088 55.000 0.00 0.00 0.00 3.02
128 129 0.618458 GTGGCATAGGTCCAGGTGAA 59.382 55.000 0.00 0.00 33.63 3.18
129 130 1.271840 GGTGGCATAGGTCCAGGTGA 61.272 60.000 0.00 0.00 33.63 4.02
130 131 1.224592 GGTGGCATAGGTCCAGGTG 59.775 63.158 0.00 0.00 33.63 4.00
131 132 2.367202 CGGTGGCATAGGTCCAGGT 61.367 63.158 0.00 0.00 33.63 4.00
132 133 2.032860 CTCGGTGGCATAGGTCCAGG 62.033 65.000 0.00 0.00 33.63 4.45
133 134 1.043116 TCTCGGTGGCATAGGTCCAG 61.043 60.000 0.00 0.00 33.63 3.86
134 135 1.001120 TCTCGGTGGCATAGGTCCA 59.999 57.895 0.00 0.00 0.00 4.02
135 136 1.742768 CTCTCGGTGGCATAGGTCC 59.257 63.158 0.00 0.00 0.00 4.46
136 137 0.755698 TCCTCTCGGTGGCATAGGTC 60.756 60.000 0.00 0.00 0.00 3.85
137 138 0.325296 TTCCTCTCGGTGGCATAGGT 60.325 55.000 0.00 0.00 0.00 3.08
138 139 0.830648 TTTCCTCTCGGTGGCATAGG 59.169 55.000 0.00 0.00 0.00 2.57
139 140 2.280628 GTTTTCCTCTCGGTGGCATAG 58.719 52.381 0.00 0.00 0.00 2.23
140 141 1.065709 GGTTTTCCTCTCGGTGGCATA 60.066 52.381 0.00 0.00 36.94 3.14
141 142 0.322546 GGTTTTCCTCTCGGTGGCAT 60.323 55.000 0.00 0.00 36.94 4.40
142 143 1.072505 GGTTTTCCTCTCGGTGGCA 59.927 57.895 0.00 0.00 36.94 4.92
143 144 1.072505 TGGTTTTCCTCTCGGTGGC 59.927 57.895 0.00 0.00 41.38 5.01
144 145 0.949105 CGTGGTTTTCCTCTCGGTGG 60.949 60.000 0.00 0.00 41.38 4.61
145 146 0.032952 TCGTGGTTTTCCTCTCGGTG 59.967 55.000 0.00 0.00 41.38 4.94
146 147 0.033090 GTCGTGGTTTTCCTCTCGGT 59.967 55.000 0.00 0.00 41.38 4.69
147 148 1.007336 CGTCGTGGTTTTCCTCTCGG 61.007 60.000 0.00 0.00 41.38 4.63
148 149 0.039798 TCGTCGTGGTTTTCCTCTCG 60.040 55.000 0.00 0.00 41.38 4.04
149 150 1.416373 GTCGTCGTGGTTTTCCTCTC 58.584 55.000 0.00 0.00 41.38 3.20
150 151 0.318445 CGTCGTCGTGGTTTTCCTCT 60.318 55.000 0.00 0.00 41.38 3.69
151 152 2.139210 CGTCGTCGTGGTTTTCCTC 58.861 57.895 0.00 0.00 41.38 3.71
152 153 4.331356 CGTCGTCGTGGTTTTCCT 57.669 55.556 0.00 0.00 41.38 3.36
162 163 3.422655 TGATTACATGAAGACGTCGTCG 58.577 45.455 23.32 14.17 37.67 5.12
163 164 3.240861 GCTGATTACATGAAGACGTCGTC 59.759 47.826 22.45 22.45 0.00 4.20
164 165 3.119459 AGCTGATTACATGAAGACGTCGT 60.119 43.478 10.46 6.85 0.00 4.34
165 166 3.439293 AGCTGATTACATGAAGACGTCG 58.561 45.455 10.46 0.00 0.00 5.12
166 167 4.424626 TGAGCTGATTACATGAAGACGTC 58.575 43.478 7.70 7.70 0.00 4.34
167 168 4.158579 TCTGAGCTGATTACATGAAGACGT 59.841 41.667 0.00 0.00 0.00 4.34
168 169 4.502282 GTCTGAGCTGATTACATGAAGACG 59.498 45.833 0.00 0.00 0.00 4.18
169 170 5.414360 TGTCTGAGCTGATTACATGAAGAC 58.586 41.667 0.00 0.00 33.72 3.01
170 171 5.665916 TGTCTGAGCTGATTACATGAAGA 57.334 39.130 0.00 0.00 0.00 2.87
171 172 5.220359 CGTTGTCTGAGCTGATTACATGAAG 60.220 44.000 0.00 0.00 0.00 3.02
172 173 4.627035 CGTTGTCTGAGCTGATTACATGAA 59.373 41.667 0.00 0.00 0.00 2.57
173 174 4.176271 CGTTGTCTGAGCTGATTACATGA 58.824 43.478 0.00 0.00 0.00 3.07
174 175 3.242220 GCGTTGTCTGAGCTGATTACATG 60.242 47.826 0.00 0.00 0.00 3.21
175 176 2.932614 GCGTTGTCTGAGCTGATTACAT 59.067 45.455 0.00 0.00 0.00 2.29
176 177 2.337583 GCGTTGTCTGAGCTGATTACA 58.662 47.619 0.00 0.00 0.00 2.41
177 178 1.661112 GGCGTTGTCTGAGCTGATTAC 59.339 52.381 0.00 0.00 0.00 1.89
178 179 1.275010 TGGCGTTGTCTGAGCTGATTA 59.725 47.619 0.00 0.00 0.00 1.75
179 180 0.035317 TGGCGTTGTCTGAGCTGATT 59.965 50.000 0.00 0.00 0.00 2.57
180 181 0.251354 ATGGCGTTGTCTGAGCTGAT 59.749 50.000 0.00 0.00 0.00 2.90
181 182 0.671472 CATGGCGTTGTCTGAGCTGA 60.671 55.000 0.00 0.00 0.00 4.26
182 183 0.952497 ACATGGCGTTGTCTGAGCTG 60.952 55.000 0.00 0.00 0.00 4.24
183 184 0.671781 GACATGGCGTTGTCTGAGCT 60.672 55.000 11.79 0.00 42.22 4.09
184 185 1.639298 GGACATGGCGTTGTCTGAGC 61.639 60.000 16.76 1.09 44.39 4.26
185 186 2.460330 GGACATGGCGTTGTCTGAG 58.540 57.895 16.76 0.00 44.39 3.35
186 187 4.693532 GGACATGGCGTTGTCTGA 57.306 55.556 16.76 0.00 44.39 3.27
187 188 3.168271 CGGACATGGCGTTGTCTG 58.832 61.111 16.76 14.86 44.39 3.51
188 189 2.742372 GCGGACATGGCGTTGTCT 60.742 61.111 16.76 0.00 44.39 3.41
189 190 3.027170 CTGCGGACATGGCGTTGTC 62.027 63.158 10.88 10.88 44.27 3.18
190 191 3.049674 CTGCGGACATGGCGTTGT 61.050 61.111 0.00 0.00 0.00 3.32
191 192 4.465512 GCTGCGGACATGGCGTTG 62.466 66.667 0.00 0.00 0.00 4.10
194 195 4.529219 TAGGCTGCGGACATGGCG 62.529 66.667 0.00 0.00 0.00 5.69
195 196 1.718757 CTTTAGGCTGCGGACATGGC 61.719 60.000 0.00 0.00 0.00 4.40
196 197 1.718757 GCTTTAGGCTGCGGACATGG 61.719 60.000 0.00 0.00 38.06 3.66
197 198 1.026182 TGCTTTAGGCTGCGGACATG 61.026 55.000 0.00 0.00 42.39 3.21
198 199 0.107017 ATGCTTTAGGCTGCGGACAT 60.107 50.000 0.00 0.00 42.39 3.06
199 200 0.539518 TATGCTTTAGGCTGCGGACA 59.460 50.000 0.00 0.00 42.39 4.02
200 201 1.202533 TCTATGCTTTAGGCTGCGGAC 60.203 52.381 0.00 0.00 42.39 4.79
201 202 1.119684 TCTATGCTTTAGGCTGCGGA 58.880 50.000 0.00 0.00 42.39 5.54
202 203 2.175878 ATCTATGCTTTAGGCTGCGG 57.824 50.000 0.00 0.00 42.39 5.69
203 204 2.156504 CGAATCTATGCTTTAGGCTGCG 59.843 50.000 0.00 0.00 42.39 5.18
204 205 3.393800 TCGAATCTATGCTTTAGGCTGC 58.606 45.455 0.00 0.00 42.39 5.25
205 206 6.393990 AGTATCGAATCTATGCTTTAGGCTG 58.606 40.000 0.00 0.00 42.39 4.85
206 207 6.597832 AGTATCGAATCTATGCTTTAGGCT 57.402 37.500 0.00 0.00 42.39 4.58
207 208 7.813148 TGTAAGTATCGAATCTATGCTTTAGGC 59.187 37.037 3.74 0.00 42.22 3.93
208 209 9.347934 CTGTAAGTATCGAATCTATGCTTTAGG 57.652 37.037 3.74 0.00 32.50 2.69
211 212 7.596995 GCTCTGTAAGTATCGAATCTATGCTTT 59.403 37.037 3.74 0.00 32.50 3.51
212 213 7.040062 AGCTCTGTAAGTATCGAATCTATGCTT 60.040 37.037 3.89 3.89 34.30 3.91
213 214 6.432783 AGCTCTGTAAGTATCGAATCTATGCT 59.567 38.462 0.00 0.00 33.76 3.79
214 215 6.616947 AGCTCTGTAAGTATCGAATCTATGC 58.383 40.000 0.00 0.00 33.76 3.14
215 216 7.962373 CAGAGCTCTGTAAGTATCGAATCTATG 59.038 40.741 31.71 3.84 39.09 2.23
216 217 7.361713 GCAGAGCTCTGTAAGTATCGAATCTAT 60.362 40.741 37.25 0.00 45.45 1.98
217 218 6.072948 GCAGAGCTCTGTAAGTATCGAATCTA 60.073 42.308 37.25 0.00 45.45 1.98
218 219 5.278266 GCAGAGCTCTGTAAGTATCGAATCT 60.278 44.000 37.25 0.00 45.45 2.40
219 220 4.915085 GCAGAGCTCTGTAAGTATCGAATC 59.085 45.833 37.25 17.15 45.45 2.52
220 221 4.261825 GGCAGAGCTCTGTAAGTATCGAAT 60.262 45.833 37.25 0.91 45.45 3.34
221 222 3.066900 GGCAGAGCTCTGTAAGTATCGAA 59.933 47.826 37.25 0.00 45.45 3.71
222 223 2.619177 GGCAGAGCTCTGTAAGTATCGA 59.381 50.000 37.25 0.00 45.45 3.59
223 224 2.621055 AGGCAGAGCTCTGTAAGTATCG 59.379 50.000 37.25 15.29 45.45 2.92
224 225 3.304391 CGAGGCAGAGCTCTGTAAGTATC 60.304 52.174 37.25 24.92 45.45 2.24
225 226 2.621055 CGAGGCAGAGCTCTGTAAGTAT 59.379 50.000 37.25 20.53 45.45 2.12
226 227 2.017782 CGAGGCAGAGCTCTGTAAGTA 58.982 52.381 37.25 0.00 45.45 2.24
227 228 0.814457 CGAGGCAGAGCTCTGTAAGT 59.186 55.000 37.25 22.72 45.45 2.24
228 229 0.102120 CCGAGGCAGAGCTCTGTAAG 59.898 60.000 37.25 26.42 45.45 2.34
229 230 1.949847 GCCGAGGCAGAGCTCTGTAA 61.950 60.000 37.25 0.00 45.45 2.41
230 231 2.418910 GCCGAGGCAGAGCTCTGTA 61.419 63.158 37.25 0.00 45.45 2.74
231 232 3.768922 GCCGAGGCAGAGCTCTGT 61.769 66.667 37.25 23.56 45.45 3.41
232 233 3.459965 AGCCGAGGCAGAGCTCTG 61.460 66.667 34.82 34.82 46.40 3.35
236 237 4.828925 GTGGAGCCGAGGCAGAGC 62.829 72.222 17.18 2.59 44.88 4.09
237 238 2.849120 CTTGTGGAGCCGAGGCAGAG 62.849 65.000 17.18 1.13 44.88 3.35
238 239 2.922503 TTGTGGAGCCGAGGCAGA 60.923 61.111 17.18 0.00 44.88 4.26
239 240 2.435586 CTTGTGGAGCCGAGGCAG 60.436 66.667 17.18 0.00 44.88 4.85
240 241 4.704833 GCTTGTGGAGCCGAGGCA 62.705 66.667 17.18 0.00 46.01 4.75
248 249 3.140576 CAGAGCTCTGCTTGTGGAG 57.859 57.895 29.79 4.09 39.88 3.86
258 259 3.440872 CGGTTACAGTCTTACAGAGCTCT 59.559 47.826 11.45 11.45 0.00 4.09
259 260 3.190953 ACGGTTACAGTCTTACAGAGCTC 59.809 47.826 5.27 5.27 0.00 4.09
260 261 3.155501 ACGGTTACAGTCTTACAGAGCT 58.844 45.455 0.00 0.00 0.00 4.09
261 262 3.572604 ACGGTTACAGTCTTACAGAGC 57.427 47.619 0.00 0.00 0.00 4.09
262 263 5.163774 GGACTACGGTTACAGTCTTACAGAG 60.164 48.000 8.88 0.00 40.83 3.35
263 264 4.697352 GGACTACGGTTACAGTCTTACAGA 59.303 45.833 8.88 0.00 40.83 3.41
264 265 4.456911 TGGACTACGGTTACAGTCTTACAG 59.543 45.833 8.88 0.00 40.83 2.74
265 266 4.397420 TGGACTACGGTTACAGTCTTACA 58.603 43.478 8.88 0.00 40.83 2.41
266 267 5.048434 AGTTGGACTACGGTTACAGTCTTAC 60.048 44.000 8.88 7.55 40.83 2.34
267 268 5.072741 AGTTGGACTACGGTTACAGTCTTA 58.927 41.667 8.88 0.00 40.83 2.10
268 269 3.893813 AGTTGGACTACGGTTACAGTCTT 59.106 43.478 8.88 0.00 40.83 3.01
269 270 3.494332 AGTTGGACTACGGTTACAGTCT 58.506 45.455 8.88 0.00 40.83 3.24
270 271 3.930634 AGTTGGACTACGGTTACAGTC 57.069 47.619 0.00 1.70 40.40 3.51
271 272 5.789643 TTAAGTTGGACTACGGTTACAGT 57.210 39.130 0.00 0.00 0.00 3.55
272 273 5.636543 CCTTTAAGTTGGACTACGGTTACAG 59.363 44.000 0.00 0.00 0.00 2.74
273 274 5.540911 CCTTTAAGTTGGACTACGGTTACA 58.459 41.667 0.00 0.00 0.00 2.41
274 275 4.389992 GCCTTTAAGTTGGACTACGGTTAC 59.610 45.833 0.00 0.00 0.00 2.50
275 276 4.563374 GGCCTTTAAGTTGGACTACGGTTA 60.563 45.833 0.00 0.00 0.00 2.85
276 277 3.405831 GCCTTTAAGTTGGACTACGGTT 58.594 45.455 0.00 0.00 0.00 4.44
277 278 2.289882 GGCCTTTAAGTTGGACTACGGT 60.290 50.000 0.00 0.00 0.00 4.83
278 279 2.289819 TGGCCTTTAAGTTGGACTACGG 60.290 50.000 3.32 0.00 31.24 4.02
279 280 2.740447 GTGGCCTTTAAGTTGGACTACG 59.260 50.000 3.32 0.00 31.24 3.51
280 281 3.079578 GGTGGCCTTTAAGTTGGACTAC 58.920 50.000 3.32 0.00 31.24 2.73
281 282 2.712087 TGGTGGCCTTTAAGTTGGACTA 59.288 45.455 3.32 0.00 31.24 2.59
282 283 1.497286 TGGTGGCCTTTAAGTTGGACT 59.503 47.619 3.32 0.00 31.24 3.85
283 284 1.611977 GTGGTGGCCTTTAAGTTGGAC 59.388 52.381 3.32 0.00 0.00 4.02
284 285 1.479757 GGTGGTGGCCTTTAAGTTGGA 60.480 52.381 3.32 0.00 0.00 3.53
285 286 0.966179 GGTGGTGGCCTTTAAGTTGG 59.034 55.000 3.32 0.00 0.00 3.77
286 287 1.698506 TGGTGGTGGCCTTTAAGTTG 58.301 50.000 3.32 0.00 0.00 3.16
287 288 2.036387 GTTGGTGGTGGCCTTTAAGTT 58.964 47.619 3.32 0.00 0.00 2.66
288 289 1.699730 GTTGGTGGTGGCCTTTAAGT 58.300 50.000 3.32 0.00 0.00 2.24
289 290 0.966179 GGTTGGTGGTGGCCTTTAAG 59.034 55.000 3.32 0.00 0.00 1.85
290 291 0.824182 CGGTTGGTGGTGGCCTTTAA 60.824 55.000 3.32 0.00 0.00 1.52
291 292 1.228306 CGGTTGGTGGTGGCCTTTA 60.228 57.895 3.32 0.00 0.00 1.85
292 293 2.520741 CGGTTGGTGGTGGCCTTT 60.521 61.111 3.32 0.00 0.00 3.11
293 294 3.494254 TCGGTTGGTGGTGGCCTT 61.494 61.111 3.32 0.00 0.00 4.35
294 295 4.265056 GTCGGTTGGTGGTGGCCT 62.265 66.667 3.32 0.00 0.00 5.19
296 297 4.572571 TGGTCGGTTGGTGGTGGC 62.573 66.667 0.00 0.00 0.00 5.01
297 298 2.281484 CTGGTCGGTTGGTGGTGG 60.281 66.667 0.00 0.00 0.00 4.61
298 299 1.891919 CACTGGTCGGTTGGTGGTG 60.892 63.158 0.00 0.00 0.00 4.17
299 300 2.508928 CACTGGTCGGTTGGTGGT 59.491 61.111 0.00 0.00 0.00 4.16
300 301 2.978010 GCACTGGTCGGTTGGTGG 60.978 66.667 0.00 0.00 0.00 4.61
301 302 2.978010 GGCACTGGTCGGTTGGTG 60.978 66.667 0.00 0.00 0.00 4.17
302 303 4.265056 GGGCACTGGTCGGTTGGT 62.265 66.667 0.00 0.00 0.00 3.67
309 310 4.468689 GTAGGCGGGGCACTGGTC 62.469 72.222 0.00 0.00 0.00 4.02
311 312 4.778143 GTGTAGGCGGGGCACTGG 62.778 72.222 0.00 0.00 0.00 4.00
321 322 3.291101 TTCTCACGGGCGTGTAGGC 62.291 63.158 0.00 0.00 45.55 3.93
322 323 1.153823 CTTCTCACGGGCGTGTAGG 60.154 63.158 0.00 0.00 45.55 3.18
323 324 0.179161 CTCTTCTCACGGGCGTGTAG 60.179 60.000 0.00 0.00 45.55 2.74
324 325 0.607217 TCTCTTCTCACGGGCGTGTA 60.607 55.000 0.00 0.00 45.55 2.90
325 326 1.901948 TCTCTTCTCACGGGCGTGT 60.902 57.895 0.00 0.00 45.55 4.49
326 327 1.444553 GTCTCTTCTCACGGGCGTG 60.445 63.158 0.00 0.00 46.64 5.34
327 328 2.637383 GGTCTCTTCTCACGGGCGT 61.637 63.158 0.00 0.00 0.00 5.68
328 329 2.182030 GGTCTCTTCTCACGGGCG 59.818 66.667 0.00 0.00 0.00 6.13
329 330 2.182030 CGGTCTCTTCTCACGGGC 59.818 66.667 0.00 0.00 0.00 6.13
330 331 2.182030 GCGGTCTCTTCTCACGGG 59.818 66.667 0.00 0.00 0.00 5.28
331 332 2.182030 GGCGGTCTCTTCTCACGG 59.818 66.667 0.00 0.00 0.00 4.94
332 333 2.202492 CGGCGGTCTCTTCTCACG 60.202 66.667 0.00 0.00 0.00 4.35
333 334 2.182030 CCGGCGGTCTCTTCTCAC 59.818 66.667 19.97 0.00 0.00 3.51
334 335 2.035155 TCCGGCGGTCTCTTCTCA 59.965 61.111 27.32 0.00 0.00 3.27
335 336 2.341101 TGTCCGGCGGTCTCTTCTC 61.341 63.158 27.32 7.81 0.00 2.87
336 337 2.282958 TGTCCGGCGGTCTCTTCT 60.283 61.111 27.32 0.00 0.00 2.85
337 338 2.126031 GTGTCCGGCGGTCTCTTC 60.126 66.667 27.32 10.80 0.00 2.87
338 339 3.692406 GGTGTCCGGCGGTCTCTT 61.692 66.667 27.32 0.00 0.00 2.85
339 340 4.988716 TGGTGTCCGGCGGTCTCT 62.989 66.667 27.32 0.00 0.00 3.10
340 341 4.736896 GTGGTGTCCGGCGGTCTC 62.737 72.222 27.32 20.54 0.00 3.36
349 350 1.819632 GATGATGGCGGTGGTGTCC 60.820 63.158 0.00 0.00 0.00 4.02
350 351 0.464373 ATGATGATGGCGGTGGTGTC 60.464 55.000 0.00 0.00 0.00 3.67
351 352 0.464373 GATGATGATGGCGGTGGTGT 60.464 55.000 0.00 0.00 0.00 4.16
352 353 1.168407 GGATGATGATGGCGGTGGTG 61.168 60.000 0.00 0.00 0.00 4.17
353 354 1.149174 GGATGATGATGGCGGTGGT 59.851 57.895 0.00 0.00 0.00 4.16
354 355 1.962822 CGGATGATGATGGCGGTGG 60.963 63.158 0.00 0.00 0.00 4.61
355 356 2.610694 GCGGATGATGATGGCGGTG 61.611 63.158 0.00 0.00 0.00 4.94
356 357 2.281070 GCGGATGATGATGGCGGT 60.281 61.111 0.00 0.00 0.00 5.68
357 358 2.031616 AGCGGATGATGATGGCGG 59.968 61.111 0.00 0.00 0.00 6.13
358 359 2.962827 GCAGCGGATGATGATGGCG 61.963 63.158 0.00 0.00 31.64 5.69
359 360 2.623915 GGCAGCGGATGATGATGGC 61.624 63.158 0.00 0.00 31.64 4.40
360 361 1.970114 GGGCAGCGGATGATGATGG 60.970 63.158 0.00 0.00 31.64 3.51
361 362 1.970114 GGGGCAGCGGATGATGATG 60.970 63.158 0.00 0.00 31.64 3.07
362 363 2.433446 GGGGCAGCGGATGATGAT 59.567 61.111 0.00 0.00 31.64 2.45
363 364 3.877450 GGGGGCAGCGGATGATGA 61.877 66.667 0.00 0.00 31.64 2.92
364 365 3.719646 TTGGGGGCAGCGGATGATG 62.720 63.158 0.00 0.00 33.68 3.07
365 366 3.419580 TTGGGGGCAGCGGATGAT 61.420 61.111 0.00 0.00 0.00 2.45
366 367 4.424711 GTTGGGGGCAGCGGATGA 62.425 66.667 0.00 0.00 0.00 2.92
373 374 4.366684 GGTGAGGGTTGGGGGCAG 62.367 72.222 0.00 0.00 0.00 4.85
374 375 4.938756 AGGTGAGGGTTGGGGGCA 62.939 66.667 0.00 0.00 0.00 5.36
375 376 4.048470 GAGGTGAGGGTTGGGGGC 62.048 72.222 0.00 0.00 0.00 5.80
382 383 1.539124 GGGTTCCTGAGGTGAGGGT 60.539 63.158 0.00 0.00 33.41 4.34
401 402 3.134127 GTGGATCTGGCGCCCAAC 61.134 66.667 26.77 8.25 30.80 3.77
402 403 4.424711 GGTGGATCTGGCGCCCAA 62.425 66.667 26.77 12.83 30.80 4.12
406 407 4.408821 TGGTGGTGGATCTGGCGC 62.409 66.667 0.00 0.00 0.00 6.53
409 410 1.141657 CTATGGTGGTGGTGGATCTGG 59.858 57.143 0.00 0.00 0.00 3.86
413 414 0.839946 GAGCTATGGTGGTGGTGGAT 59.160 55.000 0.00 0.00 0.00 3.41
420 421 0.341961 TAGGGGTGAGCTATGGTGGT 59.658 55.000 0.00 0.00 0.00 4.16
423 424 2.050144 CATGTAGGGGTGAGCTATGGT 58.950 52.381 0.00 0.00 0.00 3.55
427 428 2.116238 GGTTCATGTAGGGGTGAGCTA 58.884 52.381 0.00 0.00 0.00 3.32
429 430 0.912486 AGGTTCATGTAGGGGTGAGC 59.088 55.000 0.00 0.00 0.00 4.26
430 431 1.486726 GGAGGTTCATGTAGGGGTGAG 59.513 57.143 0.00 0.00 0.00 3.51
433 434 2.127708 GATGGAGGTTCATGTAGGGGT 58.872 52.381 0.00 0.00 0.00 4.95
436 437 3.054434 TGGTTGATGGAGGTTCATGTAGG 60.054 47.826 0.00 0.00 0.00 3.18
439 440 3.359033 CATGGTTGATGGAGGTTCATGT 58.641 45.455 0.00 0.00 0.00 3.21
442 443 1.616725 GGCATGGTTGATGGAGGTTCA 60.617 52.381 0.00 0.00 31.99 3.18
448 449 2.440065 GGCGGCATGGTTGATGGA 60.440 61.111 3.07 0.00 31.99 3.41
452 453 2.203552 TTTGGGCGGCATGGTTGA 60.204 55.556 12.47 0.00 0.00 3.18
479 480 1.613317 TAGGCGCATGTAGGTGCAGT 61.613 55.000 10.83 0.00 45.84 4.40
480 481 0.250038 ATAGGCGCATGTAGGTGCAG 60.250 55.000 10.83 0.00 45.84 4.41
481 482 0.249868 GATAGGCGCATGTAGGTGCA 60.250 55.000 10.83 0.00 45.84 4.57
482 483 0.249868 TGATAGGCGCATGTAGGTGC 60.250 55.000 10.83 0.00 43.38 5.01
484 485 0.034059 GCTGATAGGCGCATGTAGGT 59.966 55.000 10.83 0.00 0.00 3.08
485 486 0.033920 TGCTGATAGGCGCATGTAGG 59.966 55.000 10.83 0.00 34.52 3.18
486 487 1.143305 GTGCTGATAGGCGCATGTAG 58.857 55.000 10.83 3.54 41.71 2.74
487 488 0.463620 TGTGCTGATAGGCGCATGTA 59.536 50.000 10.83 0.00 45.91 2.29
514 515 1.678970 GGAGCCTTGGCGGAACAAT 60.679 57.895 5.95 0.00 33.16 2.71
542 543 3.087253 TGGGGCTATGACGTGGGG 61.087 66.667 0.00 0.00 0.00 4.96
543 544 2.505982 CTGGGGCTATGACGTGGG 59.494 66.667 0.00 0.00 0.00 4.61
547 548 3.142393 CCTCCTGGGGCTATGACG 58.858 66.667 0.00 0.00 0.00 4.35
587 588 4.821589 GCTCCCTCGTTCCCTGCG 62.822 72.222 0.00 0.00 0.00 5.18
624 632 1.163554 GAGAACTCAGCCAGGCAAAG 58.836 55.000 15.80 12.84 0.00 2.77
629 637 1.078567 GCCAGAGAACTCAGCCAGG 60.079 63.158 4.64 0.00 0.00 4.45
630 638 1.447489 CGCCAGAGAACTCAGCCAG 60.447 63.158 4.64 0.00 0.00 4.85
650 658 0.033090 GAGGAAACCCTATACCGCCG 59.967 60.000 0.00 0.00 33.25 6.46
682 690 0.539986 TTCCTACCGCATTGACCTCC 59.460 55.000 0.00 0.00 0.00 4.30
687 695 1.757118 CTCCTCTTCCTACCGCATTGA 59.243 52.381 0.00 0.00 0.00 2.57
696 704 1.288335 GGTGTCCTCCTCCTCTTCCTA 59.712 57.143 0.00 0.00 0.00 2.94
715 723 2.989055 AAGGTCCAGCAACACGACGG 62.989 60.000 0.00 0.00 0.00 4.79
728 736 4.343526 TCTGAGATAAGATGCAGAAGGTCC 59.656 45.833 0.00 0.00 34.71 4.46
731 739 5.291178 CACTCTGAGATAAGATGCAGAAGG 58.709 45.833 12.44 0.00 36.99 3.46
735 743 4.056092 TGCACTCTGAGATAAGATGCAG 57.944 45.455 12.44 0.00 36.59 4.41
743 752 9.050601 CATAGTATATCGATGCACTCTGAGATA 57.949 37.037 12.44 0.00 0.00 1.98
789 798 4.906065 TGTCTACGTAGTTCACACACTT 57.094 40.909 21.53 0.00 37.78 3.16
791 800 6.520792 AATTTGTCTACGTAGTTCACACAC 57.479 37.500 21.53 11.27 37.78 3.82
804 813 9.543018 CCTTGATTTTTCTACGAATTTGTCTAC 57.457 33.333 0.28 0.00 0.00 2.59
807 816 9.118236 CTTCCTTGATTTTTCTACGAATTTGTC 57.882 33.333 0.28 0.00 0.00 3.18
850 860 9.989394 CAGTAAAACGTCGAATATATGTACATG 57.011 33.333 18.81 0.32 0.00 3.21
851 861 9.740239 ACAGTAAAACGTCGAATATATGTACAT 57.260 29.630 13.93 13.93 0.00 2.29
854 864 9.571810 AACACAGTAAAACGTCGAATATATGTA 57.428 29.630 0.00 0.00 0.00 2.29
855 865 8.377681 CAACACAGTAAAACGTCGAATATATGT 58.622 33.333 0.00 0.00 0.00 2.29
856 866 7.369800 GCAACACAGTAAAACGTCGAATATATG 59.630 37.037 0.00 0.00 0.00 1.78
857 867 7.396419 GCAACACAGTAAAACGTCGAATATAT 58.604 34.615 0.00 0.00 0.00 0.86
858 868 6.452741 CGCAACACAGTAAAACGTCGAATATA 60.453 38.462 0.00 0.00 0.00 0.86
859 869 5.614760 GCAACACAGTAAAACGTCGAATAT 58.385 37.500 0.00 0.00 0.00 1.28
860 870 4.375205 CGCAACACAGTAAAACGTCGAATA 60.375 41.667 0.00 0.00 0.00 1.75
861 871 3.602946 CGCAACACAGTAAAACGTCGAAT 60.603 43.478 0.00 0.00 0.00 3.34
862 872 2.285141 CGCAACACAGTAAAACGTCGAA 60.285 45.455 0.00 0.00 0.00 3.71
864 874 1.005766 ACGCAACACAGTAAAACGTCG 60.006 47.619 0.00 0.00 0.00 5.12
865 875 2.724744 ACGCAACACAGTAAAACGTC 57.275 45.000 0.00 0.00 0.00 4.34
866 876 3.803231 TGATACGCAACACAGTAAAACGT 59.197 39.130 0.00 0.00 36.17 3.99
867 877 4.377911 TGATACGCAACACAGTAAAACG 57.622 40.909 0.00 0.00 0.00 3.60
868 878 6.140110 ACAATGATACGCAACACAGTAAAAC 58.860 36.000 0.00 0.00 0.00 2.43
869 879 6.307031 ACAATGATACGCAACACAGTAAAA 57.693 33.333 0.00 0.00 0.00 1.52
870 880 5.933187 ACAATGATACGCAACACAGTAAA 57.067 34.783 0.00 0.00 0.00 2.01
871 881 6.869388 TCTTACAATGATACGCAACACAGTAA 59.131 34.615 0.00 0.00 0.00 2.24
872 882 6.391537 TCTTACAATGATACGCAACACAGTA 58.608 36.000 0.00 0.00 0.00 2.74
873 883 5.234752 TCTTACAATGATACGCAACACAGT 58.765 37.500 0.00 0.00 0.00 3.55
874 884 5.778161 TCTTACAATGATACGCAACACAG 57.222 39.130 0.00 0.00 0.00 3.66
875 885 6.735678 AATCTTACAATGATACGCAACACA 57.264 33.333 0.00 0.00 0.00 3.72
876 886 7.962918 AGAAAATCTTACAATGATACGCAACAC 59.037 33.333 0.00 0.00 0.00 3.32
877 887 8.039603 AGAAAATCTTACAATGATACGCAACA 57.960 30.769 0.00 0.00 0.00 3.33
878 888 8.895932 AAGAAAATCTTACAATGATACGCAAC 57.104 30.769 0.00 0.00 34.42 4.17
879 889 9.340695 CAAAGAAAATCTTACAATGATACGCAA 57.659 29.630 0.00 0.00 35.27 4.85
880 890 8.511321 ACAAAGAAAATCTTACAATGATACGCA 58.489 29.630 0.00 0.00 35.27 5.24
881 891 8.895932 ACAAAGAAAATCTTACAATGATACGC 57.104 30.769 0.00 0.00 35.27 4.42
892 902 9.944663 GTACACACAATGACAAAGAAAATCTTA 57.055 29.630 0.00 0.00 35.27 2.10
895 905 8.856490 AAGTACACACAATGACAAAGAAAATC 57.144 30.769 0.00 0.00 0.00 2.17
901 911 8.459521 TTGAAAAAGTACACACAATGACAAAG 57.540 30.769 0.00 0.00 0.00 2.77
903 913 7.032580 CCTTGAAAAAGTACACACAATGACAA 58.967 34.615 0.00 0.00 0.00 3.18
905 915 6.791303 TCCTTGAAAAAGTACACACAATGAC 58.209 36.000 0.00 0.00 0.00 3.06
959 969 7.056006 TCCACATGGCAATCATCATATATACC 58.944 38.462 0.00 0.00 32.92 2.73
960 970 8.687292 ATCCACATGGCAATCATCATATATAC 57.313 34.615 0.00 0.00 32.92 1.47
962 972 8.603898 AAATCCACATGGCAATCATCATATAT 57.396 30.769 0.00 0.00 32.92 0.86
963 973 7.670559 TGAAATCCACATGGCAATCATCATATA 59.329 33.333 0.00 0.00 32.92 0.86
996 1006 1.748122 CACCACTCCAGCCATCAGC 60.748 63.158 0.00 0.00 44.25 4.26
1020 1030 1.284785 TGGACCTCCCAATCATTCCAC 59.715 52.381 0.00 0.00 43.29 4.02
1134 1144 3.603144 CAGGTATGCTAGCCAGAGC 57.397 57.895 13.29 7.51 43.16 4.09
1169 1179 4.352001 ACATGTGGCCAAGGATGTATATCT 59.648 41.667 19.81 0.60 33.68 1.98
1348 1358 6.999950 TGTACAAGACATAAGCTACTCCAAA 58.000 36.000 0.00 0.00 31.20 3.28
1380 1390 4.437587 ATGGTCCAGCTGCCTGCC 62.438 66.667 8.66 7.62 44.23 4.85
1409 1419 2.097466 CCAGCGACAAATATCAACACCC 59.903 50.000 0.00 0.00 0.00 4.61
1473 1483 5.091552 AGGTTACTGATGTTCTCCAGGTTA 58.908 41.667 0.00 0.00 34.85 2.85
1506 1516 5.084519 TGTTGAGCCTCTCTAAACTTCCTA 58.915 41.667 0.00 0.00 37.12 2.94
1515 1525 4.528206 TGATCTTGTTGTTGAGCCTCTCTA 59.472 41.667 0.00 0.00 0.00 2.43
1564 1580 2.528818 CCTCTGCCTGGTCCCACAA 61.529 63.158 0.00 0.00 0.00 3.33
1565 1581 2.930019 CCTCTGCCTGGTCCCACA 60.930 66.667 0.00 0.00 0.00 4.17
1582 1598 2.082140 ACCTCTTCAAAACCCAACCC 57.918 50.000 0.00 0.00 0.00 4.11
1699 1715 3.555956 CACGCACATCCCTTATCAACTAC 59.444 47.826 0.00 0.00 0.00 2.73
1701 1717 2.027192 ACACGCACATCCCTTATCAACT 60.027 45.455 0.00 0.00 0.00 3.16
1703 1719 2.027653 TCACACGCACATCCCTTATCAA 60.028 45.455 0.00 0.00 0.00 2.57
1713 1729 2.481568 CTCAATCAACTCACACGCACAT 59.518 45.455 0.00 0.00 0.00 3.21
1715 1731 2.135139 TCTCAATCAACTCACACGCAC 58.865 47.619 0.00 0.00 0.00 5.34
1716 1732 2.524569 TCTCAATCAACTCACACGCA 57.475 45.000 0.00 0.00 0.00 5.24
1717 1733 2.475187 GCATCTCAATCAACTCACACGC 60.475 50.000 0.00 0.00 0.00 5.34
1721 1737 3.008330 AGCTGCATCTCAATCAACTCAC 58.992 45.455 1.02 0.00 0.00 3.51
1746 1762 5.925397 GGTGTACAAAACATCATGCATCAAA 59.075 36.000 0.00 0.00 41.10 2.69
1761 1777 1.025812 CGGTTGCCTTGGTGTACAAA 58.974 50.000 0.00 0.00 38.91 2.83
1762 1778 0.107116 ACGGTTGCCTTGGTGTACAA 60.107 50.000 0.00 0.00 37.55 2.41
1786 1802 3.520862 GCATCCCCGCCATGTGTG 61.521 66.667 0.00 0.00 0.00 3.82
1815 1831 3.577415 TGATGATGGCAACCAATGAAACA 59.423 39.130 0.00 0.00 36.95 2.83
1851 1867 3.270027 TGTACCATTGCTGGATCGAAAG 58.730 45.455 0.00 0.00 46.37 2.62
1865 1881 6.180472 ACTCTTCCGAAATCATTTGTACCAT 58.820 36.000 0.00 0.00 0.00 3.55
1869 1885 7.390440 ACATCAACTCTTCCGAAATCATTTGTA 59.610 33.333 0.00 0.00 0.00 2.41
1871 1887 6.615088 ACATCAACTCTTCCGAAATCATTTG 58.385 36.000 0.00 0.00 0.00 2.32
1882 1898 3.614616 GTGACGATGACATCAACTCTTCC 59.385 47.826 15.58 0.00 0.00 3.46
1883 1899 3.301906 CGTGACGATGACATCAACTCTTC 59.698 47.826 15.58 2.63 0.00 2.87
1917 1933 1.618447 TAGGAGGAAAGCCCCACCC 60.618 63.158 0.00 0.00 33.95 4.61
1941 1957 1.376424 CGCCCTCAACACTGATGCT 60.376 57.895 0.00 0.00 30.69 3.79
2075 2103 4.595781 ACTTGTACTGTCCAATGGAACCTA 59.404 41.667 2.31 0.00 31.38 3.08
2092 2120 3.009033 ACCTCCAGCAGCATTAACTTGTA 59.991 43.478 0.00 0.00 0.00 2.41
2100 2128 0.395311 CATCCACCTCCAGCAGCATT 60.395 55.000 0.00 0.00 0.00 3.56
2101 2129 1.226542 CATCCACCTCCAGCAGCAT 59.773 57.895 0.00 0.00 0.00 3.79
2105 2133 2.204136 ACCCATCCACCTCCAGCA 60.204 61.111 0.00 0.00 0.00 4.41
2113 2141 0.250553 TGAACGGTTGACCCATCCAC 60.251 55.000 0.00 0.00 0.00 4.02
2126 2154 3.323243 AGTCCAATCGTAACTTGAACGG 58.677 45.455 0.00 0.00 40.68 4.44
2139 2167 0.100682 TACGCTGCTCGAGTCCAATC 59.899 55.000 15.13 0.00 41.67 2.67
2147 2175 2.546368 ACAAACAAATTACGCTGCTCGA 59.454 40.909 5.98 0.00 41.67 4.04
2149 2177 3.421888 CACACAAACAAATTACGCTGCTC 59.578 43.478 0.00 0.00 0.00 4.26
2154 2182 1.450161 CCGCACACAAACAAATTACGC 59.550 47.619 0.00 0.00 0.00 4.42
2155 2183 2.047769 CCCGCACACAAACAAATTACG 58.952 47.619 0.00 0.00 0.00 3.18
2162 2190 1.077357 AAGTCCCCGCACACAAACA 60.077 52.632 0.00 0.00 0.00 2.83
2169 2197 1.966451 CTTCCACAAGTCCCCGCAC 60.966 63.158 0.00 0.00 0.00 5.34
2173 2201 2.716217 CATCTTCTTCCACAAGTCCCC 58.284 52.381 0.00 0.00 0.00 4.81
2199 2227 6.240894 AGCATCTGAAATCACAGTTAAGGAA 58.759 36.000 0.00 0.00 38.79 3.36
2241 2269 6.210185 CCTCCACCATTCTTTGAATCTCTTTT 59.790 38.462 0.00 0.00 0.00 2.27
2250 2278 0.400213 ACGCCTCCACCATTCTTTGA 59.600 50.000 0.00 0.00 0.00 2.69
2252 2280 0.110486 ACACGCCTCCACCATTCTTT 59.890 50.000 0.00 0.00 0.00 2.52
2277 2305 9.605275 CTGTAACTCATCATGATTTCCTCTTTA 57.395 33.333 5.16 0.00 0.00 1.85
2294 2322 0.250295 GCACTGGCCACTGTAACTCA 60.250 55.000 0.00 0.00 0.00 3.41
2307 2335 1.647545 ATGGATTCAACGCGCACTGG 61.648 55.000 5.73 0.00 0.00 4.00
2331 2359 2.242196 GGTGGGATCCTCAAAGAATCCA 59.758 50.000 12.58 0.00 33.24 3.41
2377 2405 8.267620 GCAAAATGCCAGGTAAAGATTTTATT 57.732 30.769 0.00 0.00 37.42 1.40
2406 2434 6.959639 TGCCAGGTATAGATGAAAATTTCC 57.040 37.500 3.00 0.00 0.00 3.13
2412 2440 4.392047 CTGCATGCCAGGTATAGATGAAA 58.608 43.478 16.68 0.00 37.93 2.69
2436 2464 1.139498 TGATTGCCTCCACAAGGGGA 61.139 55.000 0.00 0.00 46.32 4.81
2476 2516 3.078837 GCCGTTCAACAAGGAGGAATAA 58.921 45.455 0.00 0.00 0.00 1.40
2526 2566 1.561076 TCAGCAGTGGCATACAATCCT 59.439 47.619 0.00 0.00 44.61 3.24
2540 2580 3.643320 TCCCACATATCCTACTTCAGCAG 59.357 47.826 0.00 0.00 0.00 4.24
2542 2582 4.899352 ATCCCACATATCCTACTTCAGC 57.101 45.455 0.00 0.00 0.00 4.26
2552 2592 3.181434 TGGCTTACCCAATCCCACATATC 60.181 47.826 0.00 0.00 41.82 1.63
2569 2609 0.326264 AGATTCTTCGCACCTGGCTT 59.674 50.000 0.00 0.00 41.67 4.35
2571 2611 0.391661 TGAGATTCTTCGCACCTGGC 60.392 55.000 0.00 0.00 39.90 4.85
2574 2614 3.616956 TCAATGAGATTCTTCGCACCT 57.383 42.857 0.00 0.00 34.33 4.00
2576 2616 3.663908 CGTTCAATGAGATTCTTCGCAC 58.336 45.455 0.00 0.00 34.33 5.34
2578 2618 2.094258 TGCGTTCAATGAGATTCTTCGC 59.906 45.455 0.00 0.00 41.17 4.70
2579 2619 3.997319 TGCGTTCAATGAGATTCTTCG 57.003 42.857 0.00 0.00 0.00 3.79
2581 2621 4.264253 TGGATGCGTTCAATGAGATTCTT 58.736 39.130 0.00 0.00 0.00 2.52
2582 2622 3.877559 TGGATGCGTTCAATGAGATTCT 58.122 40.909 0.00 0.00 0.00 2.40
2676 3355 4.853142 ACGCCCCGCTCCTCCATA 62.853 66.667 0.00 0.00 0.00 2.74
2707 3389 0.476771 CACACCCCAAGTACCACCTT 59.523 55.000 0.00 0.00 0.00 3.50
2884 3566 9.400638 CTCGAATAGTGGACTGAAGTATTTATC 57.599 37.037 0.00 0.00 0.00 1.75
2891 3573 4.337145 AGTCTCGAATAGTGGACTGAAGT 58.663 43.478 2.28 0.00 37.60 3.01
2896 3578 7.012894 CAGAAGAATAGTCTCGAATAGTGGACT 59.987 40.741 7.74 7.74 41.22 3.85
2909 3591 9.787435 AGATCGAATACTACAGAAGAATAGTCT 57.213 33.333 0.00 0.00 33.65 3.24
3264 3946 9.035607 GTCATAATCGTAGTTCATGACTTCATT 57.964 33.333 0.00 0.00 41.34 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.