Multiple sequence alignment - TraesCS6B01G046600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G046600 chr6B 100.000 3530 0 0 1 3530 27780779 27777250 0.000000e+00 6519
1 TraesCS6B01G046600 chr6B 87.319 1585 191 8 948 2531 27806315 27804740 0.000000e+00 1805
2 TraesCS6B01G046600 chr6B 86.187 876 101 9 1899 2772 27709848 27708991 0.000000e+00 929
3 TraesCS6B01G046600 chr6B 96.820 283 5 1 202 484 586002441 586002719 1.480000e-128 470
4 TraesCS6B01G046600 chr6B 90.977 133 10 2 68 199 678624810 678624941 1.010000e-40 178
5 TraesCS6B01G046600 chr6A 92.323 2579 166 11 659 3231 16388521 16385969 0.000000e+00 3637
6 TraesCS6B01G046600 chr6A 86.782 2141 221 32 801 2927 16376292 16374200 0.000000e+00 2329
7 TraesCS6B01G046600 chr6A 87.219 1604 194 9 948 2549 16410072 16408478 0.000000e+00 1816
8 TraesCS6B01G046600 chr6A 93.301 209 13 1 3229 3436 16385286 16385078 1.230000e-79 307
9 TraesCS6B01G046600 chr6D 86.764 2191 218 37 760 2927 15698823 15696682 0.000000e+00 2374
10 TraesCS6B01G046600 chr6D 86.707 2159 243 31 760 2897 15748212 15746077 0.000000e+00 2357
11 TraesCS6B01G046600 chr6D 87.493 1815 205 11 747 2559 15711804 15710010 0.000000e+00 2074
12 TraesCS6B01G046600 chr6D 88.100 1605 179 9 948 2549 15799314 15797719 0.000000e+00 1895
13 TraesCS6B01G046600 chr6D 88.085 1561 182 3 990 2549 15808856 15807299 0.000000e+00 1849
14 TraesCS6B01G046600 chr6D 90.556 180 17 0 481 660 31056150 31055971 4.550000e-59 239
15 TraesCS6B01G046600 chr6D 92.126 127 9 1 80 205 15420608 15420482 1.010000e-40 178
16 TraesCS6B01G046600 chr6D 97.000 100 3 0 3431 3530 358330126 358330225 6.060000e-38 169
17 TraesCS6B01G046600 chrUn 83.492 1048 128 27 1899 2927 356328126 356329147 0.000000e+00 935
18 TraesCS6B01G046600 chrUn 83.397 1048 129 26 1899 2927 76448929 76447908 0.000000e+00 929
19 TraesCS6B01G046600 chrUn 95.050 101 5 0 3427 3527 60668554 60668654 3.650000e-35 159
20 TraesCS6B01G046600 chrUn 95.050 101 5 0 3427 3527 60726023 60726123 3.650000e-35 159
21 TraesCS6B01G046600 chrUn 95.918 98 4 0 3433 3530 222005926 222005829 3.650000e-35 159
22 TraesCS6B01G046600 chrUn 95.918 98 4 0 3433 3530 249055556 249055459 3.650000e-35 159
23 TraesCS6B01G046600 chrUn 95.918 98 4 0 3433 3530 253450794 253450697 3.650000e-35 159
24 TraesCS6B01G046600 chrUn 95.050 101 5 0 3427 3527 268688892 268688992 3.650000e-35 159
25 TraesCS6B01G046600 chrUn 95.050 101 5 0 3427 3527 358555799 358555899 3.650000e-35 159
26 TraesCS6B01G046600 chr4A 97.163 282 4 1 203 484 656477798 656478075 1.150000e-129 473
27 TraesCS6B01G046600 chr4A 89.831 118 8 4 3410 3527 497005037 497005150 7.900000e-32 148
28 TraesCS6B01G046600 chr5B 95.623 297 7 3 200 496 20031713 20032003 4.120000e-129 472
29 TraesCS6B01G046600 chr5B 78.188 596 104 22 78 660 128802728 128803310 1.210000e-94 357
30 TraesCS6B01G046600 chr3B 96.820 283 5 1 202 484 17241824 17241546 1.480000e-128 470
31 TraesCS6B01G046600 chr3B 96.820 283 5 1 203 485 248583958 248584236 1.480000e-128 470
32 TraesCS6B01G046600 chr3B 93.388 121 8 0 85 205 522186557 522186437 2.800000e-41 180
33 TraesCS6B01G046600 chr2A 96.820 283 5 1 203 485 59572878 59572600 1.480000e-128 470
34 TraesCS6B01G046600 chr2A 92.742 124 7 2 83 205 99717953 99717831 1.010000e-40 178
35 TraesCS6B01G046600 chr2B 96.479 284 6 1 202 485 485906886 485906607 1.920000e-127 466
36 TraesCS6B01G046600 chr1B 95.862 290 7 2 201 490 17872137 17871853 6.900000e-127 464
37 TraesCS6B01G046600 chr5A 95.533 291 9 1 202 492 55264170 55264456 2.480000e-126 462
38 TraesCS6B01G046600 chr5D 93.889 180 11 0 481 660 210678078 210677899 4.490000e-69 272
39 TraesCS6B01G046600 chr5D 90.299 134 9 4 70 199 440782051 440782184 4.680000e-39 172
40 TraesCS6B01G046600 chr4D 90.957 188 16 1 481 668 118151336 118151150 5.850000e-63 252
41 TraesCS6B01G046600 chr4D 90.659 182 14 2 481 660 348162537 348162717 4.550000e-59 239
42 TraesCS6B01G046600 chr4D 93.333 120 6 2 81 199 314234536 314234654 3.620000e-40 176
43 TraesCS6B01G046600 chr2D 91.667 180 14 1 481 660 213005699 213005521 7.570000e-62 248
44 TraesCS6B01G046600 chr2D 91.667 180 14 1 481 660 418555358 418555180 7.570000e-62 248
45 TraesCS6B01G046600 chr2D 90.608 181 17 0 481 661 13708848 13709028 1.270000e-59 241
46 TraesCS6B01G046600 chr3D 91.111 180 16 0 481 660 329302347 329302526 9.790000e-61 244
47 TraesCS6B01G046600 chr3D 91.111 180 15 1 481 660 596376197 596376019 3.520000e-60 243
48 TraesCS6B01G046600 chr3D 92.742 124 9 0 82 205 344036868 344036745 2.800000e-41 180
49 TraesCS6B01G046600 chr4B 94.068 118 7 0 82 199 638693815 638693932 2.800000e-41 180


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G046600 chr6B 27777250 27780779 3529 True 6519 6519 100.000 1 3530 1 chr6B.!!$R2 3529
1 TraesCS6B01G046600 chr6B 27804740 27806315 1575 True 1805 1805 87.319 948 2531 1 chr6B.!!$R3 1583
2 TraesCS6B01G046600 chr6B 27708991 27709848 857 True 929 929 86.187 1899 2772 1 chr6B.!!$R1 873
3 TraesCS6B01G046600 chr6A 16374200 16376292 2092 True 2329 2329 86.782 801 2927 1 chr6A.!!$R1 2126
4 TraesCS6B01G046600 chr6A 16385078 16388521 3443 True 1972 3637 92.812 659 3436 2 chr6A.!!$R3 2777
5 TraesCS6B01G046600 chr6A 16408478 16410072 1594 True 1816 1816 87.219 948 2549 1 chr6A.!!$R2 1601
6 TraesCS6B01G046600 chr6D 15696682 15698823 2141 True 2374 2374 86.764 760 2927 1 chr6D.!!$R2 2167
7 TraesCS6B01G046600 chr6D 15746077 15748212 2135 True 2357 2357 86.707 760 2897 1 chr6D.!!$R4 2137
8 TraesCS6B01G046600 chr6D 15710010 15711804 1794 True 2074 2074 87.493 747 2559 1 chr6D.!!$R3 1812
9 TraesCS6B01G046600 chr6D 15797719 15799314 1595 True 1895 1895 88.100 948 2549 1 chr6D.!!$R5 1601
10 TraesCS6B01G046600 chr6D 15807299 15808856 1557 True 1849 1849 88.085 990 2549 1 chr6D.!!$R6 1559
11 TraesCS6B01G046600 chrUn 356328126 356329147 1021 False 935 935 83.492 1899 2927 1 chrUn.!!$F4 1028
12 TraesCS6B01G046600 chrUn 76447908 76448929 1021 True 929 929 83.397 1899 2927 1 chrUn.!!$R1 1028
13 TraesCS6B01G046600 chr5B 128802728 128803310 582 False 357 357 78.188 78 660 1 chr5B.!!$F2 582

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
29 30 0.106918 AGTGCGTCCTGTTTTCCCAA 60.107 50.0 0.00 0.0 0.0 4.12 F
139 140 0.179032 TTGTGCACCGTGACCAAGAT 60.179 50.0 15.69 0.0 0.0 2.40 F
1080 1088 0.249868 CGGTGGACTCTGAGCACAAA 60.250 55.0 14.56 0.0 0.0 2.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1911 1919 1.400142 CGTGCGAAGATATTGGCCAAA 59.600 47.619 24.71 12.47 0.0 3.28 R
2025 2033 2.294233 GCCAAGACAAATGCAGAAGACA 59.706 45.455 0.00 0.00 0.0 3.41 R
2860 2898 1.532868 GGTCGCCAAAGCTGCTATATG 59.467 52.381 0.90 2.73 36.6 1.78 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.831685 TTCACAATGTAGTGCGTCCT 57.168 45.000 0.00 0.00 39.35 3.85
20 21 2.078849 TCACAATGTAGTGCGTCCTG 57.921 50.000 0.00 0.00 39.35 3.86
21 22 1.343142 TCACAATGTAGTGCGTCCTGT 59.657 47.619 0.00 0.00 39.35 4.00
22 23 2.143122 CACAATGTAGTGCGTCCTGTT 58.857 47.619 0.00 0.00 32.04 3.16
23 24 2.548057 CACAATGTAGTGCGTCCTGTTT 59.452 45.455 0.00 0.00 32.04 2.83
24 25 3.003275 CACAATGTAGTGCGTCCTGTTTT 59.997 43.478 0.00 0.00 32.04 2.43
25 26 3.250040 ACAATGTAGTGCGTCCTGTTTTC 59.750 43.478 0.00 0.00 0.00 2.29
26 27 1.873698 TGTAGTGCGTCCTGTTTTCC 58.126 50.000 0.00 0.00 0.00 3.13
27 28 1.154197 GTAGTGCGTCCTGTTTTCCC 58.846 55.000 0.00 0.00 0.00 3.97
28 29 0.759959 TAGTGCGTCCTGTTTTCCCA 59.240 50.000 0.00 0.00 0.00 4.37
29 30 0.106918 AGTGCGTCCTGTTTTCCCAA 60.107 50.000 0.00 0.00 0.00 4.12
30 31 0.741915 GTGCGTCCTGTTTTCCCAAA 59.258 50.000 0.00 0.00 0.00 3.28
31 32 1.339929 GTGCGTCCTGTTTTCCCAAAT 59.660 47.619 0.00 0.00 0.00 2.32
32 33 2.035632 TGCGTCCTGTTTTCCCAAATT 58.964 42.857 0.00 0.00 0.00 1.82
33 34 2.432510 TGCGTCCTGTTTTCCCAAATTT 59.567 40.909 0.00 0.00 0.00 1.82
34 35 2.799978 GCGTCCTGTTTTCCCAAATTTG 59.200 45.455 11.40 11.40 0.00 2.32
35 36 3.491792 GCGTCCTGTTTTCCCAAATTTGA 60.492 43.478 19.86 0.00 0.00 2.69
36 37 4.048504 CGTCCTGTTTTCCCAAATTTGAC 58.951 43.478 19.86 9.59 0.00 3.18
37 38 4.202111 CGTCCTGTTTTCCCAAATTTGACT 60.202 41.667 19.86 0.00 0.00 3.41
38 39 5.049828 GTCCTGTTTTCCCAAATTTGACTG 58.950 41.667 19.86 12.06 0.00 3.51
39 40 4.714308 TCCTGTTTTCCCAAATTTGACTGT 59.286 37.500 19.86 0.00 0.00 3.55
40 41 5.894393 TCCTGTTTTCCCAAATTTGACTGTA 59.106 36.000 19.86 0.00 0.00 2.74
41 42 6.381420 TCCTGTTTTCCCAAATTTGACTGTAA 59.619 34.615 19.86 5.27 0.00 2.41
42 43 7.044798 CCTGTTTTCCCAAATTTGACTGTAAA 58.955 34.615 19.86 10.33 0.00 2.01
43 44 7.714813 CCTGTTTTCCCAAATTTGACTGTAAAT 59.285 33.333 19.86 0.00 31.87 1.40
44 45 9.108284 CTGTTTTCCCAAATTTGACTGTAAATT 57.892 29.630 19.86 0.00 40.84 1.82
45 46 9.454859 TGTTTTCCCAAATTTGACTGTAAATTT 57.545 25.926 19.86 0.00 45.92 1.82
49 50 9.549078 TTCCCAAATTTGACTGTAAATTTAACC 57.451 29.630 19.86 0.00 44.23 2.85
50 51 7.868415 TCCCAAATTTGACTGTAAATTTAACCG 59.132 33.333 19.86 0.00 44.23 4.44
51 52 7.359681 CCCAAATTTGACTGTAAATTTAACCGC 60.360 37.037 19.86 0.00 44.23 5.68
52 53 7.359681 CCAAATTTGACTGTAAATTTAACCGCC 60.360 37.037 19.86 0.00 44.23 6.13
53 54 4.407496 TTGACTGTAAATTTAACCGCCG 57.593 40.909 0.00 0.00 0.00 6.46
54 55 3.401182 TGACTGTAAATTTAACCGCCGT 58.599 40.909 0.00 0.00 0.00 5.68
55 56 4.564041 TGACTGTAAATTTAACCGCCGTA 58.436 39.130 0.00 0.00 0.00 4.02
56 57 4.993584 TGACTGTAAATTTAACCGCCGTAA 59.006 37.500 0.00 0.00 0.00 3.18
57 58 5.642919 TGACTGTAAATTTAACCGCCGTAAT 59.357 36.000 0.00 0.00 0.00 1.89
58 59 6.110543 ACTGTAAATTTAACCGCCGTAATC 57.889 37.500 0.00 0.00 0.00 1.75
59 60 5.642919 ACTGTAAATTTAACCGCCGTAATCA 59.357 36.000 0.00 0.00 0.00 2.57
60 61 6.149142 ACTGTAAATTTAACCGCCGTAATCAA 59.851 34.615 0.00 0.00 0.00 2.57
61 62 7.086230 TGTAAATTTAACCGCCGTAATCAAT 57.914 32.000 0.00 0.00 0.00 2.57
62 63 7.536855 TGTAAATTTAACCGCCGTAATCAATT 58.463 30.769 0.00 0.00 0.00 2.32
63 64 6.879188 AAATTTAACCGCCGTAATCAATTG 57.121 33.333 0.00 0.00 0.00 2.32
64 65 5.570234 ATTTAACCGCCGTAATCAATTGT 57.430 34.783 5.13 0.00 0.00 2.71
65 66 2.911819 AACCGCCGTAATCAATTGTG 57.088 45.000 5.13 0.00 0.00 3.33
66 67 1.091537 ACCGCCGTAATCAATTGTGG 58.908 50.000 5.13 2.65 0.00 4.17
67 68 1.339247 ACCGCCGTAATCAATTGTGGA 60.339 47.619 5.13 0.00 0.00 4.02
68 69 1.740585 CCGCCGTAATCAATTGTGGAA 59.259 47.619 5.13 0.00 0.00 3.53
69 70 2.477189 CCGCCGTAATCAATTGTGGAAC 60.477 50.000 5.13 0.00 37.35 3.62
70 71 2.780993 GCCGTAATCAATTGTGGAACG 58.219 47.619 5.13 10.94 42.39 3.95
71 72 2.477189 GCCGTAATCAATTGTGGAACGG 60.477 50.000 25.66 25.66 42.39 4.44
72 73 3.004171 CCGTAATCAATTGTGGAACGGA 58.996 45.455 25.75 1.17 42.40 4.69
73 74 3.181514 CCGTAATCAATTGTGGAACGGAC 60.182 47.826 25.75 8.34 42.40 4.79
74 75 3.482923 CGTAATCAATTGTGGAACGGACG 60.483 47.826 5.13 2.41 42.39 4.79
75 76 1.448985 ATCAATTGTGGAACGGACGG 58.551 50.000 5.13 0.00 42.39 4.79
76 77 0.393448 TCAATTGTGGAACGGACGGA 59.607 50.000 5.13 0.00 42.39 4.69
77 78 0.796312 CAATTGTGGAACGGACGGAG 59.204 55.000 0.00 0.00 42.39 4.63
78 79 0.395312 AATTGTGGAACGGACGGAGT 59.605 50.000 0.00 0.00 44.45 3.85
79 80 1.259609 ATTGTGGAACGGACGGAGTA 58.740 50.000 0.00 0.00 41.25 2.59
80 81 1.259609 TTGTGGAACGGACGGAGTAT 58.740 50.000 0.00 0.00 41.25 2.12
81 82 0.813184 TGTGGAACGGACGGAGTATC 59.187 55.000 0.00 0.00 41.25 2.24
82 83 1.887522 TGTGGAACGGACGGAGTATCA 60.888 52.381 0.00 0.00 41.25 2.15
83 84 3.209042 TGTGGAACGGACGGAGTATCAT 61.209 50.000 0.00 0.00 41.25 2.45
84 85 3.936457 TGTGGAACGGACGGAGTATCATA 60.936 47.826 0.00 0.00 41.25 2.15
102 103 2.875094 TATACTCCCTCCGTCTAGGC 57.125 55.000 0.00 0.00 40.77 3.93
105 106 1.453379 CTCCCTCCGTCTAGGCGAA 60.453 63.158 20.35 0.00 40.77 4.70
138 139 1.092921 GTTGTGCACCGTGACCAAGA 61.093 55.000 15.69 0.00 0.00 3.02
139 140 0.179032 TTGTGCACCGTGACCAAGAT 60.179 50.000 15.69 0.00 0.00 2.40
158 159 3.196685 AGATGGAGGGAAAAACGAGAGAG 59.803 47.826 0.00 0.00 0.00 3.20
159 160 1.002087 TGGAGGGAAAAACGAGAGAGC 59.998 52.381 0.00 0.00 0.00 4.09
209 210 2.776312 CATGCAATGCTCTAAGGCTG 57.224 50.000 6.82 0.00 37.62 4.85
214 215 2.012673 CAATGCTCTAAGGCTGGTCAC 58.987 52.381 0.00 0.00 0.00 3.67
221 222 2.449031 TAAGGCTGGTCACAGTGCGG 62.449 60.000 0.00 0.00 46.62 5.69
222 223 4.314440 GGCTGGTCACAGTGCGGA 62.314 66.667 0.00 0.00 46.62 5.54
223 224 2.740055 GCTGGTCACAGTGCGGAG 60.740 66.667 0.00 0.00 46.62 4.63
224 225 2.047844 CTGGTCACAGTGCGGAGG 60.048 66.667 0.00 0.00 39.92 4.30
226 227 2.099652 CTGGTCACAGTGCGGAGGAA 62.100 60.000 0.00 0.00 39.92 3.36
227 228 1.668151 GGTCACAGTGCGGAGGAAC 60.668 63.158 0.00 0.00 0.00 3.62
229 230 0.249911 GTCACAGTGCGGAGGAACTT 60.250 55.000 0.00 0.00 41.55 2.66
230 231 1.000506 GTCACAGTGCGGAGGAACTTA 59.999 52.381 0.00 0.00 41.55 2.24
232 233 0.608640 ACAGTGCGGAGGAACTTAGG 59.391 55.000 0.00 0.00 41.55 2.69
241 242 4.737055 GCGGAGGAACTTAGGAGTAACATC 60.737 50.000 0.00 0.00 41.55 3.06
242 243 4.401519 CGGAGGAACTTAGGAGTAACATCA 59.598 45.833 0.00 0.00 41.55 3.07
243 244 5.662456 GGAGGAACTTAGGAGTAACATCAC 58.338 45.833 0.00 0.00 41.55 3.06
244 245 5.187186 GGAGGAACTTAGGAGTAACATCACA 59.813 44.000 0.00 0.00 41.55 3.58
245 246 6.038997 AGGAACTTAGGAGTAACATCACAC 57.961 41.667 0.00 0.00 34.21 3.82
246 247 5.542635 AGGAACTTAGGAGTAACATCACACA 59.457 40.000 0.00 0.00 34.21 3.72
248 249 6.420913 AACTTAGGAGTAACATCACACACT 57.579 37.500 0.00 0.00 34.21 3.55
249 250 6.420913 ACTTAGGAGTAACATCACACACTT 57.579 37.500 0.00 0.00 33.32 3.16
250 251 6.456501 ACTTAGGAGTAACATCACACACTTC 58.543 40.000 0.00 0.00 33.32 3.01
251 252 4.955811 AGGAGTAACATCACACACTTCA 57.044 40.909 0.00 0.00 0.00 3.02
253 254 5.869579 AGGAGTAACATCACACACTTCAAT 58.130 37.500 0.00 0.00 0.00 2.57
254 255 7.004555 AGGAGTAACATCACACACTTCAATA 57.995 36.000 0.00 0.00 0.00 1.90
258 259 7.861630 AGTAACATCACACACTTCAATACAAC 58.138 34.615 0.00 0.00 0.00 3.32
259 260 6.942532 AACATCACACACTTCAATACAACT 57.057 33.333 0.00 0.00 0.00 3.16
260 261 6.942532 ACATCACACACTTCAATACAACTT 57.057 33.333 0.00 0.00 0.00 2.66
263 264 5.577835 TCACACACTTCAATACAACTTTGC 58.422 37.500 0.00 0.00 0.00 3.68
265 266 6.035843 CACACACTTCAATACAACTTTGCTT 58.964 36.000 0.00 0.00 0.00 3.91
274 275 3.369546 ACAACTTTGCTTATGTGGCAC 57.630 42.857 11.55 11.55 39.55 5.01
278 279 3.343617 ACTTTGCTTATGTGGCACGTAT 58.656 40.909 19.55 7.98 39.55 3.06
286 287 6.094186 TGCTTATGTGGCACGTATTTAATGAA 59.906 34.615 19.55 4.06 34.56 2.57
287 288 6.632834 GCTTATGTGGCACGTATTTAATGAAG 59.367 38.462 19.55 13.80 0.00 3.02
295 296 6.043411 GCACGTATTTAATGAAGAGAGAGGT 58.957 40.000 0.00 0.00 0.00 3.85
296 297 6.019479 GCACGTATTTAATGAAGAGAGAGGTG 60.019 42.308 0.00 0.00 0.00 4.00
297 298 6.019479 CACGTATTTAATGAAGAGAGAGGTGC 60.019 42.308 0.00 0.00 0.00 5.01
298 299 6.127310 ACGTATTTAATGAAGAGAGAGGTGCT 60.127 38.462 0.00 0.00 0.00 4.40
300 301 6.998968 ATTTAATGAAGAGAGAGGTGCTTG 57.001 37.500 0.00 0.00 0.00 4.01
301 302 5.489792 TTAATGAAGAGAGAGGTGCTTGT 57.510 39.130 0.00 0.00 0.00 3.16
302 303 2.827800 TGAAGAGAGAGGTGCTTGTG 57.172 50.000 0.00 0.00 0.00 3.33
308 309 2.300437 GAGAGAGGTGCTTGTGGTAACT 59.700 50.000 0.00 0.00 37.61 2.24
309 310 3.507411 AGAGAGGTGCTTGTGGTAACTA 58.493 45.455 0.00 0.00 37.61 2.24
310 311 3.511934 AGAGAGGTGCTTGTGGTAACTAG 59.488 47.826 0.00 0.00 37.61 2.57
328 329 5.259832 ACTAGCTAAGTTACCGGAACATC 57.740 43.478 9.46 0.00 40.86 3.06
329 330 4.708421 ACTAGCTAAGTTACCGGAACATCA 59.292 41.667 9.46 0.00 40.86 3.07
331 332 3.259876 AGCTAAGTTACCGGAACATCACA 59.740 43.478 9.46 0.00 40.86 3.58
333 334 3.478857 AAGTTACCGGAACATCACACA 57.521 42.857 9.46 0.00 40.86 3.72
334 335 2.762745 AGTTACCGGAACATCACACAC 58.237 47.619 9.46 0.00 40.86 3.82
340 341 2.217750 CGGAACATCACACACTCCAAA 58.782 47.619 0.00 0.00 0.00 3.28
341 342 2.616376 CGGAACATCACACACTCCAAAA 59.384 45.455 0.00 0.00 0.00 2.44
342 343 3.066064 CGGAACATCACACACTCCAAAAA 59.934 43.478 0.00 0.00 0.00 1.94
389 390 7.786178 AATACATCGTTGCATAACACTACAT 57.214 32.000 0.00 0.00 36.58 2.29
391 392 6.828502 ACATCGTTGCATAACACTACATAG 57.171 37.500 0.00 0.00 36.58 2.23
395 396 6.569780 TCGTTGCATAACACTACATAGATGT 58.430 36.000 0.08 0.08 39.46 3.06
396 397 7.039270 TCGTTGCATAACACTACATAGATGTT 58.961 34.615 0.00 9.97 38.15 2.71
397 398 7.222031 TCGTTGCATAACACTACATAGATGTTC 59.778 37.037 0.00 0.80 38.15 3.18
400 401 8.245195 TGCATAACACTACATAGATGTTCCTA 57.755 34.615 0.00 0.00 41.97 2.94
409 410 6.672266 ACATAGATGTTCCTACCCACTATG 57.328 41.667 0.00 0.00 37.90 2.23
411 412 6.844388 ACATAGATGTTCCTACCCACTATGAA 59.156 38.462 1.97 0.00 37.90 2.57
424 425 9.310449 CTACCCACTATGAAGGTAGTAACATAT 57.690 37.037 7.19 0.00 45.39 1.78
426 427 9.839185 ACCCACTATGAAGGTAGTAACATATAT 57.161 33.333 0.00 0.00 33.29 0.86
444 445 9.656323 AACATATATAGTCTAGGGAAGTGTGAA 57.344 33.333 0.00 0.00 0.00 3.18
452 453 6.660094 AGTCTAGGGAAGTGTGAAGTTACTAG 59.340 42.308 0.00 0.00 0.00 2.57
453 454 4.538746 AGGGAAGTGTGAAGTTACTAGC 57.461 45.455 0.00 0.00 0.00 3.42
454 455 4.161102 AGGGAAGTGTGAAGTTACTAGCT 58.839 43.478 0.00 0.00 0.00 3.32
457 458 6.440965 AGGGAAGTGTGAAGTTACTAGCTTAT 59.559 38.462 0.00 0.00 0.00 1.73
461 462 8.535690 AAGTGTGAAGTTACTAGCTTATGTTC 57.464 34.615 0.00 0.00 0.00 3.18
462 463 7.897864 AGTGTGAAGTTACTAGCTTATGTTCT 58.102 34.615 0.00 0.00 0.00 3.01
464 465 8.436200 GTGTGAAGTTACTAGCTTATGTTCTTG 58.564 37.037 0.00 0.00 0.00 3.02
469 470 4.510167 ACTAGCTTATGTTCTTGCCCAT 57.490 40.909 0.00 0.00 0.00 4.00
471 472 4.641989 ACTAGCTTATGTTCTTGCCCATTG 59.358 41.667 0.00 0.00 0.00 2.82
489 490 0.685097 TGTGACCAGCCTAACCACTC 59.315 55.000 0.00 0.00 0.00 3.51
492 493 0.912486 GACCAGCCTAACCACTCCAT 59.088 55.000 0.00 0.00 0.00 3.41
502 503 1.593196 ACCACTCCATGTCGTGTTTG 58.407 50.000 9.80 0.09 0.00 2.93
506 507 3.135225 CACTCCATGTCGTGTTTGGTAA 58.865 45.455 4.04 0.00 0.00 2.85
519 520 6.073276 TCGTGTTTGGTAATCTCAAGTCATTG 60.073 38.462 0.00 0.00 37.80 2.82
523 524 8.352201 TGTTTGGTAATCTCAAGTCATTGAAAG 58.648 33.333 0.00 0.00 44.68 2.62
524 525 8.352942 GTTTGGTAATCTCAAGTCATTGAAAGT 58.647 33.333 0.00 0.00 44.68 2.66
527 528 9.166173 TGGTAATCTCAAGTCATTGAAAGTATG 57.834 33.333 0.00 0.00 44.68 2.39
531 532 5.120674 TCTCAAGTCATTGAAAGTATGCACG 59.879 40.000 0.00 0.00 44.68 5.34
532 533 4.754618 TCAAGTCATTGAAAGTATGCACGT 59.245 37.500 0.00 0.00 42.47 4.49
534 535 5.283060 AGTCATTGAAAGTATGCACGTTC 57.717 39.130 0.00 0.00 41.74 3.95
536 537 4.068599 TCATTGAAAGTATGCACGTTCCA 58.931 39.130 0.00 0.00 40.99 3.53
538 539 2.839975 TGAAAGTATGCACGTTCCACA 58.160 42.857 0.00 0.00 40.99 4.17
542 543 2.893637 AGTATGCACGTTCCACATCTC 58.106 47.619 0.00 0.00 0.00 2.75
548 549 3.684305 TGCACGTTCCACATCTCTTATTG 59.316 43.478 0.00 0.00 0.00 1.90
549 550 3.932710 GCACGTTCCACATCTCTTATTGA 59.067 43.478 0.00 0.00 0.00 2.57
559 560 9.716531 TCCACATCTCTTATTGATTGATATGTC 57.283 33.333 0.00 0.00 29.24 3.06
579 580 4.569162 TGTCAGTAAACAAGAAACGAGGTG 59.431 41.667 0.00 0.00 0.00 4.00
580 581 4.569564 GTCAGTAAACAAGAAACGAGGTGT 59.430 41.667 0.00 0.00 0.00 4.16
581 582 4.569162 TCAGTAAACAAGAAACGAGGTGTG 59.431 41.667 0.00 0.00 0.00 3.82
585 586 2.822764 ACAAGAAACGAGGTGTGAGTC 58.177 47.619 0.00 0.00 0.00 3.36
586 587 2.167693 ACAAGAAACGAGGTGTGAGTCA 59.832 45.455 0.00 0.00 0.00 3.41
595 596 1.207593 GTGTGAGTCAATGCACCGC 59.792 57.895 0.00 0.00 34.19 5.68
609 610 1.659211 GCACCGCGTCTAAGTGTTTTG 60.659 52.381 4.92 0.00 33.96 2.44
611 612 0.515564 CCGCGTCTAAGTGTTTTGGG 59.484 55.000 4.92 0.00 0.00 4.12
631 632 9.646427 TTTTGGGATTATTTGATTTTCGTAAGG 57.354 29.630 0.00 0.00 38.47 2.69
671 672 2.570302 GGAGGGAGTAAGTAGTTTGGCA 59.430 50.000 0.00 0.00 0.00 4.92
674 675 2.027100 GGGAGTAAGTAGTTTGGCAGCT 60.027 50.000 0.00 0.00 0.00 4.24
722 723 3.310227 ACGATCGTTGCAACAAGTGTTTA 59.690 39.130 28.01 4.21 35.83 2.01
723 724 4.201832 ACGATCGTTGCAACAAGTGTTTAA 60.202 37.500 28.01 3.24 35.83 1.52
724 725 4.144051 CGATCGTTGCAACAAGTGTTTAAC 59.856 41.667 28.01 0.00 35.83 2.01
725 726 4.688511 TCGTTGCAACAAGTGTTTAACT 57.311 36.364 28.01 0.00 42.60 2.24
727 728 6.179504 TCGTTGCAACAAGTGTTTAACTAA 57.820 33.333 28.01 0.00 38.56 2.24
728 729 6.609533 TCGTTGCAACAAGTGTTTAACTAAA 58.390 32.000 28.01 0.00 38.56 1.85
729 730 6.523893 TCGTTGCAACAAGTGTTTAACTAAAC 59.476 34.615 28.01 5.56 44.32 2.01
730 731 6.525280 CGTTGCAACAAGTGTTTAACTAAACT 59.475 34.615 28.01 0.00 44.36 2.66
731 732 7.693120 CGTTGCAACAAGTGTTTAACTAAACTA 59.307 33.333 28.01 0.00 44.36 2.24
732 733 9.006215 GTTGCAACAAGTGTTTAACTAAACTAG 57.994 33.333 24.52 0.00 44.36 2.57
733 734 8.271312 TGCAACAAGTGTTTAACTAAACTAGT 57.729 30.769 12.32 0.00 44.36 2.57
734 735 9.381033 TGCAACAAGTGTTTAACTAAACTAGTA 57.619 29.630 12.32 0.00 44.36 1.82
735 736 9.642312 GCAACAAGTGTTTAACTAAACTAGTAC 57.358 33.333 12.32 3.99 44.36 2.73
768 769 6.658831 TGTTTAATTTGAGCAGAAACGAGAG 58.341 36.000 0.00 0.00 33.64 3.20
815 816 1.400494 GCGAATATGCCAAACCGAAGT 59.600 47.619 0.00 0.00 0.00 3.01
818 819 3.730662 CGAATATGCCAAACCGAAGTTGG 60.731 47.826 7.20 7.20 35.97 3.77
856 859 8.508883 AATACATACTTTCGTGTAGTCTCTCT 57.491 34.615 0.00 0.00 34.60 3.10
905 909 4.342378 TGATAGCTAGAGCCACCTTTGTAG 59.658 45.833 0.00 0.00 43.38 2.74
915 919 2.354805 CCACCTTTGTAGTCAGCTACCC 60.355 54.545 0.00 0.00 45.24 3.69
945 953 1.205893 CCTAGTCCACAGTTCAGCTCC 59.794 57.143 0.00 0.00 0.00 4.70
946 954 2.175202 CTAGTCCACAGTTCAGCTCCT 58.825 52.381 0.00 0.00 0.00 3.69
1080 1088 0.249868 CGGTGGACTCTGAGCACAAA 60.250 55.000 14.56 0.00 0.00 2.83
1125 1133 2.491152 GGCAATCCACACATGCGG 59.509 61.111 0.00 0.00 40.94 5.69
1563 1571 2.760650 ACAACTCATCATGCCTCTCGTA 59.239 45.455 0.00 0.00 0.00 3.43
1632 1640 2.820037 GCCTACTTCGTGCCAGGC 60.820 66.667 3.66 3.66 46.21 4.85
1654 1662 1.064758 TGATGTTGGTAGTGATGGGGC 60.065 52.381 0.00 0.00 0.00 5.80
1669 1677 3.368571 GGCTGCTTGTGCTCACCC 61.369 66.667 0.00 0.00 40.48 4.61
1754 1762 4.597507 AGATAAGTTCACCAAGGTTCTCCA 59.402 41.667 0.00 0.00 35.89 3.86
1911 1919 0.745845 CCATCGCAGCTAGCTTTGGT 60.746 55.000 16.46 3.33 42.61 3.67
2025 2033 3.314331 CTCCAGACAGCCGGTGGT 61.314 66.667 1.90 0.48 32.73 4.16
2260 2268 0.623723 ATACACCACCGGCAAAGGAT 59.376 50.000 0.00 0.00 34.73 3.24
2301 2309 2.032528 ATGGTGTGCACACTCCCG 59.967 61.111 40.20 0.00 45.73 5.14
2380 2388 1.064906 CCACCGAGGAGGACTACTACA 60.065 57.143 0.00 0.00 45.00 2.74
2426 2434 4.101448 CAAGGGCCTCCACCTCGG 62.101 72.222 6.46 0.00 37.35 4.63
2532 2540 1.525442 GCCCCAGCACGTATAAGGT 59.475 57.895 0.00 0.00 39.53 3.50
2539 2547 4.382254 CCCAGCACGTATAAGGTTTCAGTA 60.382 45.833 0.00 0.00 0.00 2.74
2645 2658 3.202906 CCATTAGGACGTTGTGGTATGG 58.797 50.000 0.00 0.00 36.89 2.74
2647 2660 3.598019 TTAGGACGTTGTGGTATGGTC 57.402 47.619 0.00 0.00 0.00 4.02
2651 2664 2.006888 GACGTTGTGGTATGGTCCATG 58.993 52.381 15.10 0.00 39.81 3.66
2675 2688 0.591170 CATCGCGTGACTTTTTGGGT 59.409 50.000 5.77 0.00 0.00 4.51
2697 2711 5.140454 GTGCCTATCCAAAATCCCATTAGT 58.860 41.667 0.00 0.00 0.00 2.24
2722 2736 2.104963 GGAGTTAGTCTGCAATAGGGGG 59.895 54.545 0.00 0.00 34.56 5.40
2782 2800 5.063944 ACATTCATCGTTCTTGCATACTGTC 59.936 40.000 0.00 0.00 0.00 3.51
2842 2880 5.592282 TGATTGAGTTTTGCAACTTGGACTA 59.408 36.000 0.00 0.00 43.79 2.59
2897 2938 1.808945 GACCGACGGTGACTTTAGAGA 59.191 52.381 27.26 0.00 35.25 3.10
2908 2952 7.876068 ACGGTGACTTTAGAGAATTACATCAAA 59.124 33.333 0.00 0.00 0.00 2.69
2928 2972 9.556030 CATCAAATATATGCAAGATCACATGTC 57.444 33.333 0.00 0.00 0.00 3.06
2929 2973 8.680039 TCAAATATATGCAAGATCACATGTCA 57.320 30.769 0.00 0.00 0.00 3.58
2953 2997 2.503331 TGTCACACACCAAATGCTAGG 58.497 47.619 0.00 0.00 0.00 3.02
2985 3029 4.992951 ACTCGTTAACTAACACATTGGTCC 59.007 41.667 3.71 0.00 35.99 4.46
3004 3048 1.542375 ATGAGGTTGCTGGTCCCCT 60.542 57.895 0.00 0.00 0.00 4.79
3061 3105 4.511826 CCTGCCGAAATAGAATACACCTTC 59.488 45.833 0.00 0.00 0.00 3.46
3127 3171 0.379669 CTTCAGTTGCCATGGCGATC 59.620 55.000 29.44 21.19 45.51 3.69
3129 3173 1.452651 CAGTTGCCATGGCGATCCT 60.453 57.895 29.44 19.48 45.51 3.24
3131 3175 2.829914 TTGCCATGGCGATCCTGC 60.830 61.111 30.87 5.79 45.51 4.85
3133 3177 2.976903 GCCATGGCGATCCTGCTC 60.977 66.667 23.48 0.00 34.52 4.26
3142 3186 1.437986 GATCCTGCTCTAACGCGGT 59.562 57.895 12.47 6.42 34.46 5.68
3145 3189 3.188786 CTGCTCTAACGCGGTGCC 61.189 66.667 7.07 0.00 0.00 5.01
3146 3190 3.932580 CTGCTCTAACGCGGTGCCA 62.933 63.158 7.07 0.00 0.00 4.92
3148 3193 2.106683 GCTCTAACGCGGTGCCATT 61.107 57.895 7.07 0.00 0.00 3.16
3151 3196 1.593006 CTCTAACGCGGTGCCATTTAG 59.407 52.381 7.07 5.42 0.00 1.85
3153 3198 2.159014 TCTAACGCGGTGCCATTTAGAT 60.159 45.455 7.07 0.00 0.00 1.98
3162 3207 5.578776 CGGTGCCATTTAGATAAAAAGGAC 58.421 41.667 9.92 6.34 30.53 3.85
3168 3213 6.071051 GCCATTTAGATAAAAAGGACCCAACA 60.071 38.462 9.92 0.00 30.53 3.33
3171 3216 6.887626 TTAGATAAAAAGGACCCAACACAC 57.112 37.500 0.00 0.00 0.00 3.82
3172 3217 3.818773 AGATAAAAAGGACCCAACACACG 59.181 43.478 0.00 0.00 0.00 4.49
3173 3218 0.458260 AAAAAGGACCCAACACACGC 59.542 50.000 0.00 0.00 0.00 5.34
3174 3219 1.720694 AAAAGGACCCAACACACGCG 61.721 55.000 3.53 3.53 0.00 6.01
3175 3220 4.619227 AGGACCCAACACACGCGG 62.619 66.667 12.47 1.27 0.00 6.46
3176 3221 4.612412 GGACCCAACACACGCGGA 62.612 66.667 12.47 0.00 0.00 5.54
3177 3222 3.041940 GACCCAACACACGCGGAG 61.042 66.667 12.47 4.93 0.00 4.63
3178 3223 3.802418 GACCCAACACACGCGGAGT 62.802 63.158 12.47 5.72 0.00 3.85
3179 3224 2.590575 CCCAACACACGCGGAGTT 60.591 61.111 12.47 9.27 0.00 3.01
3180 3225 2.604174 CCCAACACACGCGGAGTTC 61.604 63.158 12.47 0.00 0.00 3.01
3224 3269 1.341080 CCACTGAATTTGTTGGGGCT 58.659 50.000 0.00 0.00 0.00 5.19
3233 3963 0.842635 TTGTTGGGGCTGCCAAAAAT 59.157 45.000 22.05 0.00 0.00 1.82
3240 3970 2.301583 GGGGCTGCCAAAAATAGTGAAA 59.698 45.455 22.05 0.00 0.00 2.69
3274 4005 4.877323 ACAAGGAGAAAAACGTCAAGAC 57.123 40.909 0.00 0.00 0.00 3.01
3275 4006 4.258543 ACAAGGAGAAAAACGTCAAGACA 58.741 39.130 0.72 0.00 0.00 3.41
3290 4021 5.164012 CGTCAAGACAGTCAGTGATCAAATC 60.164 44.000 2.66 0.00 0.00 2.17
3327 4058 8.696175 GTGTAACAAATACAAAACTATGCCAAC 58.304 33.333 0.00 0.00 45.81 3.77
3362 4093 4.823442 TGACATGCAAGAGTTGAGACATTT 59.177 37.500 0.00 0.00 0.00 2.32
3366 4097 2.666619 GCAAGAGTTGAGACATTTGCCG 60.667 50.000 0.00 0.00 39.45 5.69
3436 4167 7.698628 TGACGAAAGACATGACTAGATCTTAG 58.301 38.462 0.00 0.00 31.20 2.18
3437 4168 7.033530 ACGAAAGACATGACTAGATCTTAGG 57.966 40.000 0.00 0.00 31.20 2.69
3438 4169 5.918011 CGAAAGACATGACTAGATCTTAGGC 59.082 44.000 0.00 0.00 31.20 3.93
3439 4170 5.799827 AAGACATGACTAGATCTTAGGCC 57.200 43.478 0.00 0.00 29.63 5.19
3440 4171 4.156477 AGACATGACTAGATCTTAGGCCC 58.844 47.826 0.00 0.00 0.00 5.80
3441 4172 4.140805 AGACATGACTAGATCTTAGGCCCT 60.141 45.833 0.00 0.00 0.00 5.19
3442 4173 3.900601 ACATGACTAGATCTTAGGCCCTG 59.099 47.826 0.00 2.55 0.00 4.45
3443 4174 3.689872 TGACTAGATCTTAGGCCCTGT 57.310 47.619 0.00 0.00 0.00 4.00
3444 4175 3.995636 TGACTAGATCTTAGGCCCTGTT 58.004 45.455 0.00 0.00 0.00 3.16
3445 4176 4.362677 TGACTAGATCTTAGGCCCTGTTT 58.637 43.478 0.00 0.00 0.00 2.83
3446 4177 4.162320 TGACTAGATCTTAGGCCCTGTTTG 59.838 45.833 0.00 0.00 0.00 2.93
3447 4178 3.456277 ACTAGATCTTAGGCCCTGTTTGG 59.544 47.826 0.00 0.00 0.00 3.28
3448 4179 2.279173 AGATCTTAGGCCCTGTTTGGT 58.721 47.619 0.00 0.00 0.00 3.67
3449 4180 2.649816 AGATCTTAGGCCCTGTTTGGTT 59.350 45.455 0.00 0.00 0.00 3.67
3450 4181 2.579410 TCTTAGGCCCTGTTTGGTTC 57.421 50.000 0.00 0.00 0.00 3.62
3451 4182 1.777878 TCTTAGGCCCTGTTTGGTTCA 59.222 47.619 0.00 0.00 0.00 3.18
3452 4183 2.378547 TCTTAGGCCCTGTTTGGTTCAT 59.621 45.455 0.00 0.00 0.00 2.57
3453 4184 3.589735 TCTTAGGCCCTGTTTGGTTCATA 59.410 43.478 0.00 0.00 0.00 2.15
3454 4185 2.990740 AGGCCCTGTTTGGTTCATAA 57.009 45.000 0.00 0.00 0.00 1.90
3455 4186 2.807676 AGGCCCTGTTTGGTTCATAAG 58.192 47.619 0.00 0.00 0.00 1.73
3456 4187 2.110011 AGGCCCTGTTTGGTTCATAAGT 59.890 45.455 0.00 0.00 0.00 2.24
3457 4188 2.492088 GGCCCTGTTTGGTTCATAAGTC 59.508 50.000 0.00 0.00 0.00 3.01
3458 4189 3.421844 GCCCTGTTTGGTTCATAAGTCT 58.578 45.455 0.00 0.00 0.00 3.24
3459 4190 3.826729 GCCCTGTTTGGTTCATAAGTCTT 59.173 43.478 0.00 0.00 0.00 3.01
3460 4191 5.007682 GCCCTGTTTGGTTCATAAGTCTTA 58.992 41.667 0.00 0.00 0.00 2.10
3461 4192 5.123979 GCCCTGTTTGGTTCATAAGTCTTAG 59.876 44.000 0.00 0.00 0.00 2.18
3462 4193 5.648092 CCCTGTTTGGTTCATAAGTCTTAGG 59.352 44.000 0.00 0.00 0.00 2.69
3463 4194 6.472887 CCTGTTTGGTTCATAAGTCTTAGGA 58.527 40.000 2.85 2.85 0.00 2.94
3464 4195 6.371825 CCTGTTTGGTTCATAAGTCTTAGGAC 59.628 42.308 6.47 0.00 42.41 3.85
3488 4219 8.818622 ACTTTTTCTAGTCCCAACTAAAAAGT 57.181 30.769 17.77 17.77 46.78 2.66
3490 4221 7.812690 TTTTCTAGTCCCAACTAAAAAGTCC 57.187 36.000 0.00 0.00 37.53 3.85
3491 4222 6.758806 TTCTAGTCCCAACTAAAAAGTCCT 57.241 37.500 0.00 0.00 37.53 3.85
3492 4223 6.758806 TCTAGTCCCAACTAAAAAGTCCTT 57.241 37.500 0.00 0.00 37.53 3.36
3493 4224 7.860649 TCTAGTCCCAACTAAAAAGTCCTTA 57.139 36.000 0.00 0.00 37.53 2.69
3494 4225 7.904205 TCTAGTCCCAACTAAAAAGTCCTTAG 58.096 38.462 0.00 0.00 37.53 2.18
3495 4226 6.511017 AGTCCCAACTAAAAAGTCCTTAGT 57.489 37.500 0.00 0.00 40.52 2.24
3496 4227 6.907961 AGTCCCAACTAAAAAGTCCTTAGTT 58.092 36.000 2.84 2.84 45.90 2.24
3497 4228 6.996879 AGTCCCAACTAAAAAGTCCTTAGTTC 59.003 38.462 5.26 0.00 44.13 3.01
3498 4229 6.206243 GTCCCAACTAAAAAGTCCTTAGTTCC 59.794 42.308 5.26 0.00 44.13 3.62
3499 4230 6.102174 TCCCAACTAAAAAGTCCTTAGTTCCT 59.898 38.462 5.26 0.00 44.13 3.36
3500 4231 7.293062 TCCCAACTAAAAAGTCCTTAGTTCCTA 59.707 37.037 5.26 0.00 44.13 2.94
3501 4232 7.940688 CCCAACTAAAAAGTCCTTAGTTCCTAA 59.059 37.037 5.26 0.00 44.13 2.69
3502 4233 9.346005 CCAACTAAAAAGTCCTTAGTTCCTAAA 57.654 33.333 5.26 0.00 44.13 1.85
3508 4239 8.461249 AAAAGTCCTTAGTTCCTAAAAAGTCC 57.539 34.615 0.00 0.00 0.00 3.85
3509 4240 6.124316 AGTCCTTAGTTCCTAAAAAGTCCC 57.876 41.667 0.00 0.00 0.00 4.46
3510 4241 5.850583 AGTCCTTAGTTCCTAAAAAGTCCCT 59.149 40.000 0.00 0.00 0.00 4.20
3511 4242 6.013553 AGTCCTTAGTTCCTAAAAAGTCCCTC 60.014 42.308 0.00 0.00 0.00 4.30
3512 4243 5.250082 TCCTTAGTTCCTAAAAAGTCCCTCC 59.750 44.000 0.00 0.00 0.00 4.30
3513 4244 5.498393 CTTAGTTCCTAAAAAGTCCCTCCC 58.502 45.833 0.00 0.00 0.00 4.30
3514 4245 3.610260 AGTTCCTAAAAAGTCCCTCCCT 58.390 45.455 0.00 0.00 0.00 4.20
3515 4246 3.330998 AGTTCCTAAAAAGTCCCTCCCTG 59.669 47.826 0.00 0.00 0.00 4.45
3516 4247 2.999928 TCCTAAAAAGTCCCTCCCTGT 58.000 47.619 0.00 0.00 0.00 4.00
3517 4248 3.332968 TCCTAAAAAGTCCCTCCCTGTT 58.667 45.455 0.00 0.00 0.00 3.16
3518 4249 3.725267 TCCTAAAAAGTCCCTCCCTGTTT 59.275 43.478 0.00 0.00 0.00 2.83
3519 4250 3.826729 CCTAAAAAGTCCCTCCCTGTTTG 59.173 47.826 0.00 0.00 0.00 2.93
3520 4251 3.398318 AAAAAGTCCCTCCCTGTTTGT 57.602 42.857 0.00 0.00 0.00 2.83
3521 4252 3.398318 AAAAGTCCCTCCCTGTTTGTT 57.602 42.857 0.00 0.00 0.00 2.83
3522 4253 3.398318 AAAGTCCCTCCCTGTTTGTTT 57.602 42.857 0.00 0.00 0.00 2.83
3523 4254 2.658807 AGTCCCTCCCTGTTTGTTTC 57.341 50.000 0.00 0.00 0.00 2.78
3524 4255 1.145119 AGTCCCTCCCTGTTTGTTTCC 59.855 52.381 0.00 0.00 0.00 3.13
3525 4256 1.133606 GTCCCTCCCTGTTTGTTTCCA 60.134 52.381 0.00 0.00 0.00 3.53
3526 4257 1.144913 TCCCTCCCTGTTTGTTTCCAG 59.855 52.381 0.00 0.00 0.00 3.86
3527 4258 1.620822 CCTCCCTGTTTGTTTCCAGG 58.379 55.000 0.00 0.00 46.43 4.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.224185 ACAGGACGCACTACATTGTGAA 60.224 45.455 0.00 0.00 40.12 3.18
2 3 1.795768 ACAGGACGCACTACATTGTG 58.204 50.000 0.00 0.00 40.62 3.33
6 7 2.423577 GGAAAACAGGACGCACTACAT 58.576 47.619 0.00 0.00 0.00 2.29
7 8 1.541670 GGGAAAACAGGACGCACTACA 60.542 52.381 0.00 0.00 0.00 2.74
8 9 1.154197 GGGAAAACAGGACGCACTAC 58.846 55.000 0.00 0.00 0.00 2.73
9 10 0.759959 TGGGAAAACAGGACGCACTA 59.240 50.000 0.00 0.00 0.00 2.74
10 11 0.106918 TTGGGAAAACAGGACGCACT 60.107 50.000 0.00 0.00 0.00 4.40
11 12 0.741915 TTTGGGAAAACAGGACGCAC 59.258 50.000 0.00 0.00 0.00 5.34
12 13 1.698506 ATTTGGGAAAACAGGACGCA 58.301 45.000 0.00 0.00 0.00 5.24
13 14 2.799978 CAAATTTGGGAAAACAGGACGC 59.200 45.455 10.49 0.00 0.00 5.19
14 15 4.048504 GTCAAATTTGGGAAAACAGGACG 58.951 43.478 17.90 0.00 0.00 4.79
15 16 5.049828 CAGTCAAATTTGGGAAAACAGGAC 58.950 41.667 17.90 4.97 0.00 3.85
16 17 4.714308 ACAGTCAAATTTGGGAAAACAGGA 59.286 37.500 17.90 0.00 0.00 3.86
17 18 5.022282 ACAGTCAAATTTGGGAAAACAGG 57.978 39.130 17.90 7.48 0.00 4.00
18 19 8.661352 ATTTACAGTCAAATTTGGGAAAACAG 57.339 30.769 17.90 7.86 0.00 3.16
19 20 9.454859 AAATTTACAGTCAAATTTGGGAAAACA 57.545 25.926 17.90 0.00 43.21 2.83
23 24 9.549078 GGTTAAATTTACAGTCAAATTTGGGAA 57.451 29.630 17.90 2.59 44.08 3.97
24 25 7.868415 CGGTTAAATTTACAGTCAAATTTGGGA 59.132 33.333 17.90 0.00 44.08 4.37
25 26 7.359681 GCGGTTAAATTTACAGTCAAATTTGGG 60.360 37.037 17.90 10.40 44.08 4.12
26 27 7.359681 GGCGGTTAAATTTACAGTCAAATTTGG 60.360 37.037 17.90 4.96 44.08 3.28
27 28 7.506474 GGCGGTTAAATTTACAGTCAAATTTG 58.494 34.615 12.15 12.15 44.08 2.32
28 29 6.363896 CGGCGGTTAAATTTACAGTCAAATTT 59.636 34.615 0.00 10.40 45.45 1.82
29 30 5.859648 CGGCGGTTAAATTTACAGTCAAATT 59.140 36.000 0.00 0.00 39.26 1.82
30 31 5.048573 ACGGCGGTTAAATTTACAGTCAAAT 60.049 36.000 13.24 0.00 0.00 2.32
31 32 4.275443 ACGGCGGTTAAATTTACAGTCAAA 59.725 37.500 13.24 0.00 0.00 2.69
32 33 3.814283 ACGGCGGTTAAATTTACAGTCAA 59.186 39.130 13.24 0.00 0.00 3.18
33 34 3.401182 ACGGCGGTTAAATTTACAGTCA 58.599 40.909 13.24 0.00 0.00 3.41
34 35 5.529014 TTACGGCGGTTAAATTTACAGTC 57.471 39.130 13.24 0.00 0.00 3.51
35 36 5.642919 TGATTACGGCGGTTAAATTTACAGT 59.357 36.000 13.24 0.00 0.00 3.55
36 37 6.109320 TGATTACGGCGGTTAAATTTACAG 57.891 37.500 13.24 0.00 0.00 2.74
37 38 6.492007 TTGATTACGGCGGTTAAATTTACA 57.508 33.333 13.24 0.00 0.00 2.41
38 39 7.485595 ACAATTGATTACGGCGGTTAAATTTAC 59.514 33.333 13.59 0.00 0.00 2.01
39 40 7.485277 CACAATTGATTACGGCGGTTAAATTTA 59.515 33.333 13.59 0.00 0.00 1.40
40 41 6.309251 CACAATTGATTACGGCGGTTAAATTT 59.691 34.615 13.59 0.00 0.00 1.82
41 42 5.802956 CACAATTGATTACGGCGGTTAAATT 59.197 36.000 13.59 7.84 0.00 1.82
42 43 5.336744 CACAATTGATTACGGCGGTTAAAT 58.663 37.500 13.59 5.27 0.00 1.40
43 44 4.379603 CCACAATTGATTACGGCGGTTAAA 60.380 41.667 13.59 0.00 0.00 1.52
44 45 3.127203 CCACAATTGATTACGGCGGTTAA 59.873 43.478 13.59 1.50 0.00 2.01
45 46 2.678836 CCACAATTGATTACGGCGGTTA 59.321 45.455 13.59 0.00 0.00 2.85
46 47 1.470890 CCACAATTGATTACGGCGGTT 59.529 47.619 13.59 0.00 0.00 4.44
47 48 1.091537 CCACAATTGATTACGGCGGT 58.908 50.000 13.59 1.39 0.00 5.68
48 49 1.374560 TCCACAATTGATTACGGCGG 58.625 50.000 13.59 0.00 0.00 6.13
49 50 2.780993 GTTCCACAATTGATTACGGCG 58.219 47.619 13.59 4.80 0.00 6.46
50 51 2.477189 CCGTTCCACAATTGATTACGGC 60.477 50.000 22.56 5.63 40.26 5.68
51 52 3.004171 TCCGTTCCACAATTGATTACGG 58.996 45.455 25.47 25.47 46.08 4.02
52 53 3.482923 CGTCCGTTCCACAATTGATTACG 60.483 47.826 13.59 14.57 0.00 3.18
53 54 3.181514 CCGTCCGTTCCACAATTGATTAC 60.182 47.826 13.59 3.84 0.00 1.89
54 55 3.004171 CCGTCCGTTCCACAATTGATTA 58.996 45.455 13.59 0.00 0.00 1.75
55 56 1.810151 CCGTCCGTTCCACAATTGATT 59.190 47.619 13.59 0.00 0.00 2.57
56 57 1.002659 TCCGTCCGTTCCACAATTGAT 59.997 47.619 13.59 0.00 0.00 2.57
57 58 0.393448 TCCGTCCGTTCCACAATTGA 59.607 50.000 13.59 0.00 0.00 2.57
58 59 0.796312 CTCCGTCCGTTCCACAATTG 59.204 55.000 3.24 3.24 0.00 2.32
59 60 0.395312 ACTCCGTCCGTTCCACAATT 59.605 50.000 0.00 0.00 0.00 2.32
60 61 1.259609 TACTCCGTCCGTTCCACAAT 58.740 50.000 0.00 0.00 0.00 2.71
61 62 1.203052 GATACTCCGTCCGTTCCACAA 59.797 52.381 0.00 0.00 0.00 3.33
62 63 0.813184 GATACTCCGTCCGTTCCACA 59.187 55.000 0.00 0.00 0.00 4.17
63 64 0.813184 TGATACTCCGTCCGTTCCAC 59.187 55.000 0.00 0.00 0.00 4.02
64 65 1.771565 ATGATACTCCGTCCGTTCCA 58.228 50.000 0.00 0.00 0.00 3.53
65 66 4.699257 AGTATATGATACTCCGTCCGTTCC 59.301 45.833 0.00 0.00 0.00 3.62
66 67 5.867166 GAGTATATGATACTCCGTCCGTTC 58.133 45.833 13.45 0.00 38.33 3.95
67 68 5.876612 GAGTATATGATACTCCGTCCGTT 57.123 43.478 13.45 0.00 38.33 4.44
75 76 5.747342 AGACGGAGGGAGTATATGATACTC 58.253 45.833 15.37 15.37 42.28 2.59
76 77 5.782677 AGACGGAGGGAGTATATGATACT 57.217 43.478 0.00 0.00 0.00 2.12
77 78 6.056884 CCTAGACGGAGGGAGTATATGATAC 58.943 48.000 0.00 0.00 32.39 2.24
78 79 5.397672 GCCTAGACGGAGGGAGTATATGATA 60.398 48.000 0.00 0.00 37.06 2.15
79 80 4.629204 GCCTAGACGGAGGGAGTATATGAT 60.629 50.000 0.00 0.00 37.06 2.45
80 81 3.308259 GCCTAGACGGAGGGAGTATATGA 60.308 52.174 0.00 0.00 37.06 2.15
81 82 3.018149 GCCTAGACGGAGGGAGTATATG 58.982 54.545 0.00 0.00 37.06 1.78
82 83 2.355920 CGCCTAGACGGAGGGAGTATAT 60.356 54.545 0.00 0.00 37.06 0.86
83 84 1.002888 CGCCTAGACGGAGGGAGTATA 59.997 57.143 0.00 0.00 37.06 1.47
84 85 0.250814 CGCCTAGACGGAGGGAGTAT 60.251 60.000 0.00 0.00 37.06 2.12
102 103 5.580691 TGCACAACCTAAGATGACTTATTCG 59.419 40.000 0.00 0.00 37.85 3.34
105 106 5.186198 GGTGCACAACCTAAGATGACTTAT 58.814 41.667 20.43 0.00 46.55 1.73
138 139 2.355209 GCTCTCTCGTTTTTCCCTCCAT 60.355 50.000 0.00 0.00 0.00 3.41
139 140 1.002087 GCTCTCTCGTTTTTCCCTCCA 59.998 52.381 0.00 0.00 0.00 3.86
199 200 1.674221 GCACTGTGACCAGCCTTAGAG 60.674 57.143 12.86 0.00 42.81 2.43
200 201 0.321671 GCACTGTGACCAGCCTTAGA 59.678 55.000 12.86 0.00 42.81 2.10
205 206 4.314440 TCCGCACTGTGACCAGCC 62.314 66.667 12.86 0.00 42.81 4.85
206 207 2.740055 CTCCGCACTGTGACCAGC 60.740 66.667 12.86 0.00 42.81 4.85
209 210 1.668151 GTTCCTCCGCACTGTGACC 60.668 63.158 12.86 0.00 0.00 4.02
214 215 0.895530 TCCTAAGTTCCTCCGCACTG 59.104 55.000 0.00 0.00 0.00 3.66
221 222 6.100668 GTGTGATGTTACTCCTAAGTTCCTC 58.899 44.000 0.00 0.00 36.92 3.71
222 223 5.542635 TGTGTGATGTTACTCCTAAGTTCCT 59.457 40.000 0.00 0.00 36.92 3.36
223 224 5.638234 GTGTGTGATGTTACTCCTAAGTTCC 59.362 44.000 0.00 0.00 36.92 3.62
224 225 6.456501 AGTGTGTGATGTTACTCCTAAGTTC 58.543 40.000 0.00 0.00 36.92 3.01
226 227 6.041637 TGAAGTGTGTGATGTTACTCCTAAGT 59.958 38.462 0.00 0.00 39.66 2.24
227 228 6.455647 TGAAGTGTGTGATGTTACTCCTAAG 58.544 40.000 0.00 0.00 0.00 2.18
229 230 6.413783 TTGAAGTGTGTGATGTTACTCCTA 57.586 37.500 0.00 0.00 0.00 2.94
230 231 4.955811 TGAAGTGTGTGATGTTACTCCT 57.044 40.909 0.00 0.00 0.00 3.69
232 233 7.652300 TGTATTGAAGTGTGTGATGTTACTC 57.348 36.000 0.00 0.00 0.00 2.59
241 242 5.581605 AGCAAAGTTGTATTGAAGTGTGTG 58.418 37.500 0.00 0.00 0.00 3.82
242 243 5.835113 AGCAAAGTTGTATTGAAGTGTGT 57.165 34.783 0.00 0.00 0.00 3.72
243 244 7.862372 ACATAAGCAAAGTTGTATTGAAGTGTG 59.138 33.333 0.00 0.00 0.00 3.82
244 245 7.862372 CACATAAGCAAAGTTGTATTGAAGTGT 59.138 33.333 0.00 0.00 0.00 3.55
245 246 7.326789 CCACATAAGCAAAGTTGTATTGAAGTG 59.673 37.037 0.00 0.00 0.00 3.16
246 247 7.370383 CCACATAAGCAAAGTTGTATTGAAGT 58.630 34.615 0.00 0.00 0.00 3.01
248 249 6.155827 GCCACATAAGCAAAGTTGTATTGAA 58.844 36.000 0.00 0.00 0.00 2.69
249 250 5.242615 TGCCACATAAGCAAAGTTGTATTGA 59.757 36.000 0.00 0.00 37.28 2.57
250 251 5.345741 GTGCCACATAAGCAAAGTTGTATTG 59.654 40.000 0.00 0.00 43.02 1.90
251 252 5.469479 GTGCCACATAAGCAAAGTTGTATT 58.531 37.500 0.00 0.00 43.02 1.89
253 254 3.058570 CGTGCCACATAAGCAAAGTTGTA 60.059 43.478 0.00 0.00 43.02 2.41
254 255 2.287547 CGTGCCACATAAGCAAAGTTGT 60.288 45.455 0.00 0.00 43.02 3.32
258 259 4.355543 AATACGTGCCACATAAGCAAAG 57.644 40.909 0.00 0.00 43.02 2.77
259 260 4.775058 AAATACGTGCCACATAAGCAAA 57.225 36.364 0.00 0.00 43.02 3.68
260 261 5.881777 TTAAATACGTGCCACATAAGCAA 57.118 34.783 0.00 0.00 43.02 3.91
263 264 7.915508 TCTTCATTAAATACGTGCCACATAAG 58.084 34.615 0.00 0.00 0.00 1.73
265 266 7.269316 TCTCTTCATTAAATACGTGCCACATA 58.731 34.615 0.00 0.00 0.00 2.29
274 275 6.276847 AGCACCTCTCTCTTCATTAAATACG 58.723 40.000 0.00 0.00 0.00 3.06
278 279 5.702670 CACAAGCACCTCTCTCTTCATTAAA 59.297 40.000 0.00 0.00 0.00 1.52
286 287 2.300437 GTTACCACAAGCACCTCTCTCT 59.700 50.000 0.00 0.00 0.00 3.10
287 288 2.300437 AGTTACCACAAGCACCTCTCTC 59.700 50.000 0.00 0.00 0.00 3.20
295 296 4.884668 ACTTAGCTAGTTACCACAAGCA 57.115 40.909 0.00 0.00 37.44 3.91
308 309 4.463539 TGTGATGTTCCGGTAACTTAGCTA 59.536 41.667 0.00 0.00 38.99 3.32
309 310 3.259876 TGTGATGTTCCGGTAACTTAGCT 59.740 43.478 0.00 0.00 38.99 3.32
310 311 3.370061 GTGTGATGTTCCGGTAACTTAGC 59.630 47.826 0.00 0.00 38.99 3.09
311 312 4.387862 GTGTGTGATGTTCCGGTAACTTAG 59.612 45.833 0.00 0.00 38.99 2.18
314 315 2.367567 AGTGTGTGATGTTCCGGTAACT 59.632 45.455 0.00 0.00 38.99 2.24
321 322 4.647424 TTTTTGGAGTGTGTGATGTTCC 57.353 40.909 0.00 0.00 0.00 3.62
358 359 9.594038 GTGTTATGCAACGATGTATTTATTAGG 57.406 33.333 0.97 0.00 37.48 2.69
368 369 6.569780 TCTATGTAGTGTTATGCAACGATGT 58.430 36.000 0.00 0.00 37.48 3.06
369 370 7.169813 ACATCTATGTAGTGTTATGCAACGATG 59.830 37.037 0.00 0.00 39.68 3.84
371 372 6.569780 ACATCTATGTAGTGTTATGCAACGA 58.430 36.000 0.00 0.00 39.68 3.85
372 373 6.828502 ACATCTATGTAGTGTTATGCAACG 57.171 37.500 0.00 0.00 39.68 4.10
373 374 7.495934 AGGAACATCTATGTAGTGTTATGCAAC 59.504 37.037 0.00 0.00 40.80 4.17
374 375 7.564793 AGGAACATCTATGTAGTGTTATGCAA 58.435 34.615 0.00 0.00 40.80 4.08
377 378 8.088981 GGGTAGGAACATCTATGTAGTGTTATG 58.911 40.741 0.00 0.00 40.80 1.90
380 381 5.962031 TGGGTAGGAACATCTATGTAGTGTT 59.038 40.000 0.00 7.33 40.80 3.32
381 382 5.363005 GTGGGTAGGAACATCTATGTAGTGT 59.637 44.000 0.00 0.00 40.80 3.55
382 383 5.598830 AGTGGGTAGGAACATCTATGTAGTG 59.401 44.000 0.00 0.00 40.80 2.74
389 390 5.839063 CCTTCATAGTGGGTAGGAACATCTA 59.161 44.000 0.00 0.00 28.58 1.98
391 392 4.409247 ACCTTCATAGTGGGTAGGAACATC 59.591 45.833 0.00 0.00 28.58 3.06
400 401 9.839185 ATATATGTTACTACCTTCATAGTGGGT 57.161 33.333 0.00 0.00 36.09 4.51
424 425 8.334734 AGTAACTTCACACTTCCCTAGACTATA 58.665 37.037 0.00 0.00 0.00 1.31
426 427 6.550163 AGTAACTTCACACTTCCCTAGACTA 58.450 40.000 0.00 0.00 0.00 2.59
427 428 5.395611 AGTAACTTCACACTTCCCTAGACT 58.604 41.667 0.00 0.00 0.00 3.24
428 429 5.725325 AGTAACTTCACACTTCCCTAGAC 57.275 43.478 0.00 0.00 0.00 2.59
429 430 5.418209 GCTAGTAACTTCACACTTCCCTAGA 59.582 44.000 0.00 0.00 0.00 2.43
430 431 5.419471 AGCTAGTAACTTCACACTTCCCTAG 59.581 44.000 0.00 0.00 0.00 3.02
431 432 5.331069 AGCTAGTAACTTCACACTTCCCTA 58.669 41.667 0.00 0.00 0.00 3.53
433 434 4.538746 AGCTAGTAACTTCACACTTCCC 57.461 45.455 0.00 0.00 0.00 3.97
435 436 8.535690 AACATAAGCTAGTAACTTCACACTTC 57.464 34.615 0.00 0.00 0.00 3.01
437 438 7.897864 AGAACATAAGCTAGTAACTTCACACT 58.102 34.615 0.00 0.00 0.00 3.55
439 440 7.117812 GCAAGAACATAAGCTAGTAACTTCACA 59.882 37.037 0.00 0.00 0.00 3.58
440 441 7.413109 GGCAAGAACATAAGCTAGTAACTTCAC 60.413 40.741 0.00 0.00 0.00 3.18
441 442 6.594159 GGCAAGAACATAAGCTAGTAACTTCA 59.406 38.462 0.00 0.00 0.00 3.02
442 443 6.037281 GGGCAAGAACATAAGCTAGTAACTTC 59.963 42.308 0.00 0.00 0.00 3.01
444 445 5.045869 TGGGCAAGAACATAAGCTAGTAACT 60.046 40.000 0.00 0.00 0.00 2.24
452 453 3.193267 TCACAATGGGCAAGAACATAAGC 59.807 43.478 0.00 0.00 0.00 3.09
453 454 4.380867 GGTCACAATGGGCAAGAACATAAG 60.381 45.833 0.00 0.00 0.00 1.73
454 455 3.509575 GGTCACAATGGGCAAGAACATAA 59.490 43.478 0.00 0.00 0.00 1.90
457 458 1.327303 GGTCACAATGGGCAAGAACA 58.673 50.000 0.00 0.00 0.00 3.18
461 462 1.588082 GCTGGTCACAATGGGCAAG 59.412 57.895 0.00 0.00 0.00 4.01
462 463 1.907807 GGCTGGTCACAATGGGCAA 60.908 57.895 0.00 0.00 0.00 4.52
464 465 0.323360 TTAGGCTGGTCACAATGGGC 60.323 55.000 0.00 0.00 0.00 5.36
469 470 1.071699 GAGTGGTTAGGCTGGTCACAA 59.928 52.381 14.87 0.00 0.00 3.33
471 472 0.036294 GGAGTGGTTAGGCTGGTCAC 60.036 60.000 0.00 2.48 0.00 3.67
489 490 4.000325 TGAGATTACCAAACACGACATGG 59.000 43.478 0.00 0.00 40.16 3.66
492 493 4.699637 ACTTGAGATTACCAAACACGACA 58.300 39.130 0.00 0.00 0.00 4.35
502 503 8.125448 GCATACTTTCAATGACTTGAGATTACC 58.875 37.037 0.00 0.00 42.19 2.85
506 507 6.183360 CGTGCATACTTTCAATGACTTGAGAT 60.183 38.462 0.00 0.00 42.19 2.75
519 520 3.684788 AGATGTGGAACGTGCATACTTTC 59.315 43.478 0.00 0.00 42.39 2.62
523 524 2.893637 AGAGATGTGGAACGTGCATAC 58.106 47.619 0.00 0.00 42.39 2.39
524 525 3.610040 AAGAGATGTGGAACGTGCATA 57.390 42.857 0.00 0.00 42.39 3.14
527 528 3.932710 TCAATAAGAGATGTGGAACGTGC 59.067 43.478 0.00 0.00 42.39 5.34
534 535 9.498176 TGACATATCAATCAATAAGAGATGTGG 57.502 33.333 6.64 0.00 42.33 4.17
548 549 9.478019 CGTTTCTTGTTTACTGACATATCAATC 57.522 33.333 0.00 0.00 33.30 2.67
549 550 9.214957 TCGTTTCTTGTTTACTGACATATCAAT 57.785 29.630 0.00 0.00 33.30 2.57
559 560 4.569162 TCACACCTCGTTTCTTGTTTACTG 59.431 41.667 0.00 0.00 0.00 2.74
561 562 4.569564 ACTCACACCTCGTTTCTTGTTTAC 59.430 41.667 0.00 0.00 0.00 2.01
562 563 4.761975 ACTCACACCTCGTTTCTTGTTTA 58.238 39.130 0.00 0.00 0.00 2.01
579 580 2.227968 GACGCGGTGCATTGACTCAC 62.228 60.000 12.47 0.00 0.00 3.51
580 581 2.027073 GACGCGGTGCATTGACTCA 61.027 57.895 12.47 0.00 0.00 3.41
581 582 0.457853 TAGACGCGGTGCATTGACTC 60.458 55.000 12.47 0.00 0.00 3.36
585 586 0.095245 CACTTAGACGCGGTGCATTG 59.905 55.000 12.47 0.00 0.00 2.82
586 587 0.320421 ACACTTAGACGCGGTGCATT 60.320 50.000 12.47 0.00 34.70 3.56
595 596 7.812648 TCAAATAATCCCAAAACACTTAGACG 58.187 34.615 0.00 0.00 0.00 4.18
609 610 7.913821 GTCACCTTACGAAAATCAAATAATCCC 59.086 37.037 0.00 0.00 0.00 3.85
631 632 4.275443 CCTCCGTCTAGGTGTATAAGTCAC 59.725 50.000 0.00 0.00 41.99 3.67
639 640 1.293062 ACTCCCTCCGTCTAGGTGTA 58.707 55.000 0.00 0.00 41.99 2.90
643 644 2.732844 ACTTACTCCCTCCGTCTAGG 57.267 55.000 0.00 0.00 42.97 3.02
671 672 7.615403 TCTGTTCTGTTCAACTTATCATAGCT 58.385 34.615 0.00 0.00 0.00 3.32
738 739 9.478019 CGTTTCTGCTCAAATTAAACATAGTAG 57.522 33.333 0.00 0.00 31.85 2.57
739 740 9.210329 TCGTTTCTGCTCAAATTAAACATAGTA 57.790 29.630 0.00 0.00 31.85 1.82
768 769 2.561373 CTGCCCGCGTTTCCTTTC 59.439 61.111 4.92 0.00 0.00 2.62
840 843 4.576879 TCTGCTAGAGAGACTACACGAAA 58.423 43.478 0.00 0.00 0.00 3.46
856 859 5.278266 GGTTGTAATGCTTGTGTTTCTGCTA 60.278 40.000 0.00 0.00 0.00 3.49
905 909 1.222113 GAGGCAAGGGGTAGCTGAC 59.778 63.158 0.00 0.00 0.00 3.51
915 919 1.306997 TGGACTAGGGGAGGCAAGG 60.307 63.158 0.00 0.00 33.03 3.61
946 954 2.301296 CACTTTGCTCTCTCCTTGGAGA 59.699 50.000 17.37 17.37 39.69 3.71
957 965 0.037447 GAGGGCTTCCACTTTGCTCT 59.963 55.000 0.00 0.00 40.63 4.09
958 966 0.037447 AGAGGGCTTCCACTTTGCTC 59.963 55.000 0.00 0.00 0.00 4.26
1080 1088 3.522750 AGAAGATCTTGATGGACTTGGCT 59.477 43.478 14.00 0.00 0.00 4.75
1563 1571 1.611977 CATGCCAAGATGCCATCGAAT 59.388 47.619 0.00 0.00 0.00 3.34
1632 1640 3.216800 CCCCATCACTACCAACATCATG 58.783 50.000 0.00 0.00 0.00 3.07
1654 1662 1.970114 CCAGGGTGAGCACAAGCAG 60.970 63.158 2.75 0.00 45.49 4.24
1669 1677 2.356667 GGGAAGGTCTTGCCCCAG 59.643 66.667 9.72 0.00 44.16 4.45
1911 1919 1.400142 CGTGCGAAGATATTGGCCAAA 59.600 47.619 24.71 12.47 0.00 3.28
1977 1985 4.569023 CAGAGACGGGCGCGCATA 62.569 66.667 34.42 0.00 0.00 3.14
2025 2033 2.294233 GCCAAGACAAATGCAGAAGACA 59.706 45.455 0.00 0.00 0.00 3.41
2260 2268 6.836242 TGATCATAATACCCATGTACTGCAA 58.164 36.000 0.00 0.00 0.00 4.08
2380 2388 2.185350 CTCTGTCCATTCGGCGCT 59.815 61.111 7.64 0.00 0.00 5.92
2645 2658 3.576356 CGCGATGTGGGCATGGAC 61.576 66.667 0.00 0.00 35.07 4.02
2647 2660 3.879682 CACGCGATGTGGGCATGG 61.880 66.667 15.93 0.00 45.21 3.66
2675 2688 5.139727 CACTAATGGGATTTTGGATAGGCA 58.860 41.667 0.00 0.00 0.00 4.75
2697 2711 3.706594 CCTATTGCAGACTAACTCCTCCA 59.293 47.826 0.00 0.00 0.00 3.86
2722 2736 8.894768 ACTCTTCTCATAACATATTACAAGCC 57.105 34.615 0.00 0.00 0.00 4.35
2782 2800 8.270799 CACACAAGTGCAATGAAAATTAAAGAG 58.729 33.333 7.69 0.00 39.21 2.85
2860 2898 1.532868 GGTCGCCAAAGCTGCTATATG 59.467 52.381 0.90 2.73 36.60 1.78
2908 2952 9.379791 CATACTGACATGTGATCTTGCATATAT 57.620 33.333 1.15 0.00 0.00 0.86
2928 2972 3.503363 AGCATTTGGTGTGTGACATACTG 59.497 43.478 12.16 4.04 0.00 2.74
2929 2973 3.754965 AGCATTTGGTGTGTGACATACT 58.245 40.909 12.16 0.00 0.00 2.12
2953 2997 2.943449 AGTTAACGAGTAGCAGCTCC 57.057 50.000 0.00 0.00 32.11 4.70
2958 3002 5.636121 CCAATGTGTTAGTTAACGAGTAGCA 59.364 40.000 0.00 0.00 39.00 3.49
2985 3029 4.326255 GGGACCAGCAACCTCATG 57.674 61.111 0.00 0.00 0.00 3.07
3004 3048 6.110411 AGCTAGCTGGAGTAAACAAGTTTA 57.890 37.500 18.57 1.46 34.23 2.01
3127 3171 3.188786 GCACCGCGTTAGAGCAGG 61.189 66.667 4.92 0.00 36.85 4.85
3129 3173 2.796483 AATGGCACCGCGTTAGAGCA 62.796 55.000 4.92 0.00 36.85 4.26
3131 3175 1.593006 CTAAATGGCACCGCGTTAGAG 59.407 52.381 4.92 0.00 0.00 2.43
3133 3177 1.647346 TCTAAATGGCACCGCGTTAG 58.353 50.000 4.92 4.67 0.00 2.34
3142 3186 5.584913 TGGGTCCTTTTTATCTAAATGGCA 58.415 37.500 0.00 0.00 39.64 4.92
3145 3189 7.812669 GTGTGTTGGGTCCTTTTTATCTAAATG 59.187 37.037 0.00 0.00 0.00 2.32
3146 3190 7.308951 CGTGTGTTGGGTCCTTTTTATCTAAAT 60.309 37.037 0.00 0.00 0.00 1.40
3148 3193 5.470777 CGTGTGTTGGGTCCTTTTTATCTAA 59.529 40.000 0.00 0.00 0.00 2.10
3151 3196 3.610821 GCGTGTGTTGGGTCCTTTTTATC 60.611 47.826 0.00 0.00 0.00 1.75
3153 3198 1.677052 GCGTGTGTTGGGTCCTTTTTA 59.323 47.619 0.00 0.00 0.00 1.52
3162 3207 2.590575 AACTCCGCGTGTGTTGGG 60.591 61.111 4.92 0.00 29.86 4.12
3168 3213 2.657296 CGTGTGAACTCCGCGTGT 60.657 61.111 4.92 0.00 0.00 4.49
3171 3216 2.805353 CTCCGTGTGAACTCCGCG 60.805 66.667 0.00 0.00 35.69 6.46
3172 3217 1.444553 CTCTCCGTGTGAACTCCGC 60.445 63.158 0.00 0.00 0.00 5.54
3173 3218 0.811915 ATCTCTCCGTGTGAACTCCG 59.188 55.000 0.00 0.00 0.00 4.63
3174 3219 1.135333 GGATCTCTCCGTGTGAACTCC 59.865 57.143 0.00 0.00 0.00 3.85
3175 3220 2.570442 GGATCTCTCCGTGTGAACTC 57.430 55.000 0.00 0.00 0.00 3.01
3195 3240 7.763985 CCCAACAAATTCAGTGGGAAATATTAC 59.236 37.037 12.81 0.00 39.39 1.89
3202 3247 2.324541 CCCCAACAAATTCAGTGGGAA 58.675 47.619 17.74 0.00 38.82 3.97
3256 3987 4.120589 GACTGTCTTGACGTTTTTCTCCT 58.879 43.478 0.00 0.00 0.00 3.69
3274 4005 3.061831 GTGCTCGATTTGATCACTGACTG 59.938 47.826 0.00 0.00 39.94 3.51
3275 4006 3.257393 GTGCTCGATTTGATCACTGACT 58.743 45.455 0.00 0.00 39.94 3.41
3301 4032 8.696175 GTTGGCATAGTTTTGTATTTGTTACAC 58.304 33.333 0.00 0.00 40.53 2.90
3305 4036 6.928492 CCTGTTGGCATAGTTTTGTATTTGTT 59.072 34.615 0.00 0.00 0.00 2.83
3327 4058 1.610038 TGCATGTCAACTCTTTGCCTG 59.390 47.619 0.00 0.00 32.17 4.85
3366 4097 1.206578 CACCATTTGTGTCGACCGC 59.793 57.895 14.12 6.69 40.26 5.68
3387 4118 5.687166 ATAAAAAGGTCAGGTCCGTATCA 57.313 39.130 0.00 0.00 0.00 2.15
3388 4119 6.596497 TCAAATAAAAAGGTCAGGTCCGTATC 59.404 38.462 0.00 0.00 0.00 2.24
3436 4167 2.492088 GACTTATGAACCAAACAGGGCC 59.508 50.000 0.00 0.00 43.89 5.80
3437 4168 3.421844 AGACTTATGAACCAAACAGGGC 58.578 45.455 0.00 0.00 43.89 5.19
3438 4169 5.648092 CCTAAGACTTATGAACCAAACAGGG 59.352 44.000 0.00 0.00 43.89 4.45
3439 4170 6.371825 GTCCTAAGACTTATGAACCAAACAGG 59.628 42.308 2.20 0.00 40.95 4.00
3440 4171 7.365840 GTCCTAAGACTTATGAACCAAACAG 57.634 40.000 2.20 0.00 40.10 3.16
3463 4194 8.818622 ACTTTTTAGTTGGGACTAGAAAAAGT 57.181 30.769 18.18 18.18 46.80 2.66
3464 4195 8.350722 GGACTTTTTAGTTGGGACTAGAAAAAG 58.649 37.037 17.36 17.36 45.76 2.27
3465 4196 8.057011 AGGACTTTTTAGTTGGGACTAGAAAAA 58.943 33.333 0.00 0.00 40.10 1.94
3466 4197 7.580007 AGGACTTTTTAGTTGGGACTAGAAAA 58.420 34.615 0.00 5.68 40.10 2.29
3467 4198 7.145474 AGGACTTTTTAGTTGGGACTAGAAA 57.855 36.000 0.00 3.34 39.04 2.52
3468 4199 6.758806 AGGACTTTTTAGTTGGGACTAGAA 57.241 37.500 0.00 0.00 39.43 2.10
3469 4200 6.758806 AAGGACTTTTTAGTTGGGACTAGA 57.241 37.500 0.00 0.00 39.43 2.43
3470 4201 7.677892 ACTAAGGACTTTTTAGTTGGGACTAG 58.322 38.462 0.00 0.00 37.95 2.57
3471 4202 7.622502 ACTAAGGACTTTTTAGTTGGGACTA 57.377 36.000 0.00 0.00 37.95 2.59
3472 4203 6.511017 ACTAAGGACTTTTTAGTTGGGACT 57.489 37.500 0.00 0.00 37.95 3.85
3473 4204 6.206243 GGAACTAAGGACTTTTTAGTTGGGAC 59.794 42.308 13.33 1.99 46.09 4.46
3474 4205 6.102174 AGGAACTAAGGACTTTTTAGTTGGGA 59.898 38.462 13.33 0.00 46.09 4.37
3475 4206 6.304624 AGGAACTAAGGACTTTTTAGTTGGG 58.695 40.000 13.33 0.00 46.09 4.12
3484 4215 7.147177 AGGGACTTTTTAGGAACTAAGGACTTT 60.147 37.037 0.00 0.00 45.97 2.66
3485 4216 6.332103 AGGGACTTTTTAGGAACTAAGGACTT 59.668 38.462 0.00 0.00 45.97 3.01
3486 4217 5.850583 AGGGACTTTTTAGGAACTAAGGACT 59.149 40.000 0.00 0.00 45.97 3.85
3487 4218 6.124316 AGGGACTTTTTAGGAACTAAGGAC 57.876 41.667 0.00 0.00 45.97 3.85
3491 4222 5.013808 CAGGGAGGGACTTTTTAGGAACTAA 59.986 44.000 0.00 0.00 45.97 2.24
3492 4223 4.534897 CAGGGAGGGACTTTTTAGGAACTA 59.465 45.833 0.00 0.00 41.55 2.24
3493 4224 3.330998 CAGGGAGGGACTTTTTAGGAACT 59.669 47.826 0.00 0.00 41.55 3.01
3494 4225 3.074094 ACAGGGAGGGACTTTTTAGGAAC 59.926 47.826 0.00 0.00 41.55 3.62
3495 4226 3.332968 ACAGGGAGGGACTTTTTAGGAA 58.667 45.455 0.00 0.00 41.55 3.36
3496 4227 2.999928 ACAGGGAGGGACTTTTTAGGA 58.000 47.619 0.00 0.00 41.55 2.94
3497 4228 3.808834 AACAGGGAGGGACTTTTTAGG 57.191 47.619 0.00 0.00 41.55 2.69
3498 4229 4.470602 ACAAACAGGGAGGGACTTTTTAG 58.529 43.478 0.00 0.00 41.55 1.85
3499 4230 4.529716 ACAAACAGGGAGGGACTTTTTA 57.470 40.909 0.00 0.00 41.55 1.52
3500 4231 3.398318 ACAAACAGGGAGGGACTTTTT 57.602 42.857 0.00 0.00 41.55 1.94
3501 4232 3.398318 AACAAACAGGGAGGGACTTTT 57.602 42.857 0.00 0.00 41.55 2.27
3502 4233 3.296854 GAAACAAACAGGGAGGGACTTT 58.703 45.455 0.00 0.00 41.55 2.66
3503 4234 2.424379 GGAAACAAACAGGGAGGGACTT 60.424 50.000 0.00 0.00 41.55 3.01
3504 4235 3.504636 TGGAAACAAACAGGGAGGGACT 61.505 50.000 0.00 0.00 39.11 3.85
3505 4236 1.133606 TGGAAACAAACAGGGAGGGAC 60.134 52.381 0.00 0.00 37.44 4.46
3506 4237 1.144913 CTGGAAACAAACAGGGAGGGA 59.855 52.381 0.00 0.00 42.06 4.20
3507 4238 1.620822 CTGGAAACAAACAGGGAGGG 58.379 55.000 0.00 0.00 42.06 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.