AutoCloner

Multiple sequence alignment - TraesCS6B01G044700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6B01G044700	chr6B	100.000	2375	0	0	1	2375	26658262	26655888	0.000000e+00	4386.0
1	TraesCS6B01G044700	chr6B	94.268	2355	67	26	1	2320	621033846	621036167	0.000000e+00	3539.0
2	TraesCS6B01G044700	chr7B	96.393	2329	59	9	1	2328	39763433	39765737	0.000000e+00	3812.0
3	TraesCS6B01G044700	chr7B	93.212	2357	110	30	1	2327	640099866	640102202	0.000000e+00	3421.0
4	TraesCS6B01G044700	chr7B	97.715	744	16	1	1	744	724303959	724303217	0.000000e+00	1279.0
5	TraesCS6B01G044700	chr5B	96.223	2330	64	10	1	2328	41859166	41856859	0.000000e+00	3794.0
6	TraesCS6B01G044700	chr5B	94.710	2363	76	29	1	2328	449646019	449648367	0.000000e+00	3626.0
7	TraesCS6B01G044700	chr1B	95.161	2356	65	26	9	2330	56409062	56411402	0.000000e+00	3674.0
8	TraesCS6B01G044700	chr1B	94.844	2366	70	25	3	2332	63661720	63664069	0.000000e+00	3646.0
9	TraesCS6B01G044700	chr1B	94.837	2363	75	25	1	2329	644238867	644241216	0.000000e+00	3644.0
10	TraesCS6B01G044700	chr1B	97.581	744	17	1	1	744	447998134	447998876	0.000000e+00	1273.0
11	TraesCS6B01G044700	chr3B	96.417	2177	49	8	153	2328	177462969	177460821	0.000000e+00	3561.0
12	TraesCS6B01G044700	chr3B	97.984	744	13	2	1	744	60549084	60548343	0.000000e+00	1290.0
13	TraesCS6B01G044700	chr2B	93.801	2210	63	30	1	2172	67281762	67279589	0.000000e+00	3254.0
14	TraesCS6B01G044700	chr2B	97.715	744	16	1	1	744	121620475	121619733	0.000000e+00	1279.0
15	TraesCS6B01G044700	chr7D	97.872	47	1	0	2329	2375	607086018	607085972	5.440000e-12	82.4

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6B01G044700	chr6B	26655888	26658262	2374	True	4386	4386	100.000	1	2375	1	chr6B.!!$R1	2374
1	TraesCS6B01G044700	chr6B	621033846	621036167	2321	False	3539	3539	94.268	1	2320	1	chr6B.!!$F1	2319
2	TraesCS6B01G044700	chr7B	39763433	39765737	2304	False	3812	3812	96.393	1	2328	1	chr7B.!!$F1	2327
3	TraesCS6B01G044700	chr7B	640099866	640102202	2336	False	3421	3421	93.212	1	2327	1	chr7B.!!$F2	2326
4	TraesCS6B01G044700	chr7B	724303217	724303959	742	True	1279	1279	97.715	1	744	1	chr7B.!!$R1	743
5	TraesCS6B01G044700	chr5B	41856859	41859166	2307	True	3794	3794	96.223	1	2328	1	chr5B.!!$R1	2327
6	TraesCS6B01G044700	chr5B	449646019	449648367	2348	False	3626	3626	94.710	1	2328	1	chr5B.!!$F1	2327
7	TraesCS6B01G044700	chr1B	56409062	56411402	2340	False	3674	3674	95.161	9	2330	1	chr1B.!!$F1	2321
8	TraesCS6B01G044700	chr1B	63661720	63664069	2349	False	3646	3646	94.844	3	2332	1	chr1B.!!$F2	2329
9	TraesCS6B01G044700	chr1B	644238867	644241216	2349	False	3644	3644	94.837	1	2329	1	chr1B.!!$F4	2328
10	TraesCS6B01G044700	chr1B	447998134	447998876	742	False	1273	1273	97.581	1	744	1	chr1B.!!$F3	743
11	TraesCS6B01G044700	chr3B	177460821	177462969	2148	True	3561	3561	96.417	153	2328	1	chr3B.!!$R2	2175
12	TraesCS6B01G044700	chr3B	60548343	60549084	741	True	1290	1290	97.984	1	744	1	chr3B.!!$R1	743
13	TraesCS6B01G044700	chr2B	67279589	67281762	2173	True	3254	3254	93.801	1	2172	1	chr2B.!!$R1	2171
14	TraesCS6B01G044700	chr2B	121619733	121620475	742	True	1279	1279	97.715	1	744	1	chr2B.!!$R2	743

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
116	117	1.033574	GTCTCCGGTACCTGATCTGG	58.966	60.000	16.56	16.56	0.0	3.86	F
1065	1136	6.096846	AGCCAAAGTCTACTGTTCAAATTGTT	59.903	34.615	0.00	0.00	0.0	2.83	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1109	1180	0.770499	TGACTGGAGCCCAACATTCA	59.23	50.0	0.0	0.0	30.8	2.57	R
2333	2468	0.040204	CAGGCCCAAAAGTCCTCCAT	59.96	55.0	0.0	0.0	0.0	3.41	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
116	117	1.033574	GTCTCCGGTACCTGATCTGG	58.966	60.000	16.56	16.56	0.00	3.86
410	411	7.390440	TCGTTGGATAACATTTCTGATTCTTGT	59.610	33.333	0.00	0.00	36.58	3.16
758	828	7.452880	AGAACAGCTTTGATGCTATTTGTTA	57.547	32.000	0.00	0.00	41.98	2.41
871	941	7.172868	TCATATTGTTCCAATTGCATGTCTT	57.827	32.000	0.00	0.00	0.00	3.01
1065	1136	6.096846	AGCCAAAGTCTACTGTTCAAATTGTT	59.903	34.615	0.00	0.00	0.00	2.83
1109	1180	3.057033	GTCAAGCAAAGCACATTCCTCAT	60.057	43.478	0.00	0.00	0.00	2.90
1150	1221	2.105134	TCTAGGAACAACTCCCGCAAAA	59.895	45.455	0.00	0.00	46.81	2.44
1244	1315	0.598065	GTGCAAGAAGAATTGGCGGT	59.402	50.000	0.00	0.00	0.00	5.68
1503	1617	2.268762	TGTTGCATTGCTACCTGTGA	57.731	45.000	18.32	0.00	33.72	3.58
1504	1618	2.580962	TGTTGCATTGCTACCTGTGAA	58.419	42.857	18.32	0.00	33.72	3.18
1505	1619	2.553602	TGTTGCATTGCTACCTGTGAAG	59.446	45.455	18.32	0.00	33.72	3.02
1506	1620	2.554032	GTTGCATTGCTACCTGTGAAGT	59.446	45.455	11.51	0.00	0.00	3.01
1507	1621	2.862541	TGCATTGCTACCTGTGAAGTT	58.137	42.857	10.49	0.00	0.00	2.66
1508	1622	4.014569	TGCATTGCTACCTGTGAAGTTA	57.985	40.909	10.49	0.00	0.00	2.24
1509	1623	4.588899	TGCATTGCTACCTGTGAAGTTAT	58.411	39.130	10.49	0.00	0.00	1.89
1510	1624	4.395854	TGCATTGCTACCTGTGAAGTTATG	59.604	41.667	10.49	0.00	0.00	1.90
1511	1625	4.396166	GCATTGCTACCTGTGAAGTTATGT	59.604	41.667	0.16	0.00	0.00	2.29
1512	1626	5.674569	GCATTGCTACCTGTGAAGTTATGTG	60.675	44.000	0.16	0.00	0.00	3.21
1513	1627	4.882842	TGCTACCTGTGAAGTTATGTGA	57.117	40.909	0.00	0.00	0.00	3.58
1514	1628	5.420725	TGCTACCTGTGAAGTTATGTGAT	57.579	39.130	0.00	0.00	0.00	3.06
1515	1629	5.419542	TGCTACCTGTGAAGTTATGTGATC	58.580	41.667	0.00	0.00	0.00	2.92
1516	1630	5.187772	TGCTACCTGTGAAGTTATGTGATCT	59.812	40.000	0.00	0.00	0.00	2.75
1517	1631	6.109359	GCTACCTGTGAAGTTATGTGATCTT	58.891	40.000	0.00	0.00	0.00	2.40
1518	1632	6.036517	GCTACCTGTGAAGTTATGTGATCTTG	59.963	42.308	0.00	0.00	0.00	3.02
1519	1633	5.869579	ACCTGTGAAGTTATGTGATCTTGT	58.130	37.500	0.00	0.00	0.00	3.16
1520	1634	5.702670	ACCTGTGAAGTTATGTGATCTTGTG	59.297	40.000	0.00	0.00	0.00	3.33
1549	1663	3.876914	TGTGATCTTGTGAACCTGTGAAC	59.123	43.478	0.00	0.00	0.00	3.18
1835	1959	2.268762	GCCAAGGCCCAAATTTGAAA	57.731	45.000	19.86	0.00	34.56	2.69
1837	1961	3.156293	GCCAAGGCCCAAATTTGAAATT	58.844	40.909	19.86	0.00	34.56	1.82
1909	2036	3.814504	TCAGAAAAAGGCTCCATTCCT	57.185	42.857	0.00	0.00	34.90	3.36
2050	2180	4.116961	CGGGCTGATTCTATTTTACGACA	58.883	43.478	0.00	0.00	0.00	4.35
2070	2200	6.966413	CGACATTTTCATTTGGTCGTAATTG	58.034	36.000	0.00	0.00	44.42	2.32
2107	2237	1.153823	CGGTGGATCTGACGTGGTC	60.154	63.158	0.00	0.00	0.00	4.02
2109	2239	1.471119	GGTGGATCTGACGTGGTCTA	58.529	55.000	0.00	0.00	33.15	2.59
2230	2365	3.564225	CAGTTTACGACCCTCAGCTTTTT	59.436	43.478	0.00	0.00	0.00	1.94
2238	2373	4.322499	CGACCCTCAGCTTTTTACCTTCTA	60.322	45.833	0.00	0.00	0.00	2.10
2332	2467	8.486210	AGATAGCATATTTCTTGTAGTGGTCAA	58.514	33.333	0.00	0.00	0.00	3.18
2333	2468	9.109393	GATAGCATATTTCTTGTAGTGGTCAAA	57.891	33.333	0.00	0.00	0.00	2.69
2334	2469	7.944729	AGCATATTTCTTGTAGTGGTCAAAT	57.055	32.000	0.00	0.00	0.00	2.32
2335	2470	7.765307	AGCATATTTCTTGTAGTGGTCAAATG	58.235	34.615	0.00	0.00	0.00	2.32
2336	2471	6.974622	GCATATTTCTTGTAGTGGTCAAATGG	59.025	38.462	0.00	0.00	0.00	3.16
2337	2472	7.148086	GCATATTTCTTGTAGTGGTCAAATGGA	60.148	37.037	0.00	0.00	0.00	3.41
2338	2473	6.824305	ATTTCTTGTAGTGGTCAAATGGAG	57.176	37.500	0.00	0.00	0.00	3.86
2339	2474	4.286297	TCTTGTAGTGGTCAAATGGAGG	57.714	45.455	0.00	0.00	0.00	4.30
2340	2475	3.907474	TCTTGTAGTGGTCAAATGGAGGA	59.093	43.478	0.00	0.00	0.00	3.71
2341	2476	3.695830	TGTAGTGGTCAAATGGAGGAC	57.304	47.619	0.00	0.00	0.00	3.85
2342	2477	3.248024	TGTAGTGGTCAAATGGAGGACT	58.752	45.455	0.00	0.00	34.49	3.85
2343	2478	3.650942	TGTAGTGGTCAAATGGAGGACTT	59.349	43.478	0.00	0.00	34.49	3.01
2344	2479	3.884037	AGTGGTCAAATGGAGGACTTT	57.116	42.857	0.00	0.00	34.49	2.66
2345	2480	4.184649	AGTGGTCAAATGGAGGACTTTT	57.815	40.909	0.00	0.00	34.49	2.27
2346	2481	3.891366	AGTGGTCAAATGGAGGACTTTTG	59.109	43.478	0.00	0.00	42.47	2.44
2347	2482	3.005791	GTGGTCAAATGGAGGACTTTTGG	59.994	47.826	0.00	0.00	41.81	3.28
2348	2483	2.562738	GGTCAAATGGAGGACTTTTGGG	59.437	50.000	0.00	0.00	41.81	4.12
2349	2484	2.029020	GTCAAATGGAGGACTTTTGGGC	60.029	50.000	0.00	0.00	41.81	5.36
2350	2485	1.276138	CAAATGGAGGACTTTTGGGCC	59.724	52.381	0.00	0.00	39.34	5.80
2351	2486	0.786435	AATGGAGGACTTTTGGGCCT	59.214	50.000	4.53	0.00	33.97	5.19
2352	2487	0.040204	ATGGAGGACTTTTGGGCCTG	59.960	55.000	4.53	0.00	30.70	4.85
2353	2488	1.304464	GGAGGACTTTTGGGCCTGG	60.304	63.158	4.53	0.00	30.70	4.45
2354	2489	1.460699	GAGGACTTTTGGGCCTGGT	59.539	57.895	4.53	0.00	30.70	4.00
2355	2490	0.609406	GAGGACTTTTGGGCCTGGTC	60.609	60.000	4.53	7.58	30.70	4.02
2356	2491	1.152830	GGACTTTTGGGCCTGGTCA	59.847	57.895	4.53	0.00	0.00	4.02
2357	2492	0.895559	GGACTTTTGGGCCTGGTCAG	60.896	60.000	4.53	0.00	0.00	3.51
2358	2493	0.110486	GACTTTTGGGCCTGGTCAGA	59.890	55.000	4.53	0.00	0.00	3.27
2359	2494	0.555769	ACTTTTGGGCCTGGTCAGAA	59.444	50.000	4.53	0.00	0.00	3.02
2360	2495	1.251251	CTTTTGGGCCTGGTCAGAAG	58.749	55.000	4.53	4.57	0.00	2.85
2361	2496	0.850100	TTTTGGGCCTGGTCAGAAGA	59.150	50.000	4.53	0.00	0.00	2.87
2362	2497	0.850100	TTTGGGCCTGGTCAGAAGAA	59.150	50.000	4.53	0.00	0.00	2.52
2363	2498	0.850100	TTGGGCCTGGTCAGAAGAAA	59.150	50.000	4.53	0.00	0.00	2.52
2364	2499	0.401738	TGGGCCTGGTCAGAAGAAAG	59.598	55.000	4.53	0.00	0.00	2.62
2365	2500	0.322906	GGGCCTGGTCAGAAGAAAGG	60.323	60.000	0.84	0.00	34.47	3.11
2366	2501	0.693049	GGCCTGGTCAGAAGAAAGGA	59.307	55.000	0.00	0.00	33.60	3.36
2367	2502	1.339535	GGCCTGGTCAGAAGAAAGGAG	60.340	57.143	0.00	0.00	33.60	3.69
2368	2503	1.339535	GCCTGGTCAGAAGAAAGGAGG	60.340	57.143	0.00	0.00	33.60	4.30
2369	2504	1.280421	CCTGGTCAGAAGAAAGGAGGG	59.720	57.143	0.00	0.00	33.60	4.30
2370	2505	1.280421	CTGGTCAGAAGAAAGGAGGGG	59.720	57.143	0.00	0.00	0.00	4.79
2371	2506	0.621082	GGTCAGAAGAAAGGAGGGGG	59.379	60.000	0.00	0.00	0.00	5.40
2372	2507	1.657804	GTCAGAAGAAAGGAGGGGGA	58.342	55.000	0.00	0.00	0.00	4.81
2373	2508	1.985895	GTCAGAAGAAAGGAGGGGGAA	59.014	52.381	0.00	0.00	0.00	3.97
2374	2509	2.578480	GTCAGAAGAAAGGAGGGGGAAT	59.422	50.000	0.00	0.00	0.00	3.01

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
116	117	1.434696	CTTGCCATTCACCATCCGC	59.565	57.895	0.00	0.00	0.00	5.54
871	941	5.514169	AGAAGATGATGACTAGTGACCTGA	58.486	41.667	0.00	0.00	0.00	3.86
1065	1136	4.883585	ACAGATTTCAACAGCACTTCTTCA	59.116	37.500	0.00	0.00	0.00	3.02
1109	1180	0.770499	TGACTGGAGCCCAACATTCA	59.230	50.000	0.00	0.00	30.80	2.57
1150	1221	4.136796	TGAGCAAATACTTCAGCAGTTGT	58.863	39.130	0.00	0.00	36.88	3.32
1244	1315	4.753516	TCTTCCGCCTTCATCTTGATTA	57.246	40.909	0.00	0.00	0.00	1.75
1503	1617	9.507329	ACATAACTTCACAAGATCACATAACTT	57.493	29.630	0.00	0.00	0.00	2.66
1504	1618	8.939929	CACATAACTTCACAAGATCACATAACT	58.060	33.333	0.00	0.00	0.00	2.24
1505	1619	8.935844	TCACATAACTTCACAAGATCACATAAC	58.064	33.333	0.00	0.00	0.00	1.89
1506	1620	9.671279	ATCACATAACTTCACAAGATCACATAA	57.329	29.630	0.00	0.00	0.00	1.90
1507	1621	9.317936	GATCACATAACTTCACAAGATCACATA	57.682	33.333	0.00	0.00	32.91	2.29
1508	1622	8.045507	AGATCACATAACTTCACAAGATCACAT	58.954	33.333	0.00	0.00	34.58	3.21
1509	1623	7.389232	AGATCACATAACTTCACAAGATCACA	58.611	34.615	0.00	0.00	34.58	3.58
1510	1624	7.840342	AGATCACATAACTTCACAAGATCAC	57.160	36.000	0.00	0.00	34.58	3.06
1511	1625	7.879677	ACAAGATCACATAACTTCACAAGATCA	59.120	33.333	0.00	0.00	34.58	2.92
1512	1626	8.173775	CACAAGATCACATAACTTCACAAGATC	58.826	37.037	0.00	0.00	0.00	2.75
1513	1627	7.879677	TCACAAGATCACATAACTTCACAAGAT	59.120	33.333	0.00	0.00	0.00	2.40
1514	1628	7.216494	TCACAAGATCACATAACTTCACAAGA	58.784	34.615	0.00	0.00	0.00	3.02
1515	1629	7.425577	TCACAAGATCACATAACTTCACAAG	57.574	36.000	0.00	0.00	0.00	3.16
1516	1630	7.255104	GGTTCACAAGATCACATAACTTCACAA	60.255	37.037	0.00	0.00	0.00	3.33
1517	1631	6.204688	GGTTCACAAGATCACATAACTTCACA	59.795	38.462	0.00	0.00	0.00	3.58
1518	1632	6.428159	AGGTTCACAAGATCACATAACTTCAC	59.572	38.462	0.00	0.00	0.00	3.18
1519	1633	6.427853	CAGGTTCACAAGATCACATAACTTCA	59.572	38.462	0.00	0.00	0.00	3.02
1520	1634	6.428159	ACAGGTTCACAAGATCACATAACTTC	59.572	38.462	0.00	0.00	0.00	3.01
1549	1663	6.348786	CCACAACTTCACAAGTGATCCATAAG	60.349	42.308	3.43	0.16	41.91	1.73
1831	1955	4.440880	CACAGCCTTTTTGGTCAATTTCA	58.559	39.130	0.00	0.00	38.35	2.69
1835	1959	1.070601	GCCACAGCCTTTTTGGTCAAT	59.929	47.619	0.00	0.00	38.35	2.57
1837	1961	2.123409	GCCACAGCCTTTTTGGTCA	58.877	52.632	0.00	0.00	38.35	4.02
1976	2106	3.130693	CCCAATAATTCGGCCCGTTTAAA	59.869	43.478	1.63	0.00	0.00	1.52
2050	2180	5.637387	GGCACAATTACGACCAAATGAAAAT	59.363	36.000	0.00	0.00	0.00	1.82
2107	2237	2.688446	TGGTCACTAGCAATCCGACTAG	59.312	50.000	0.00	0.00	41.38	2.57
2109	2239	1.557099	TGGTCACTAGCAATCCGACT	58.443	50.000	0.00	0.00	0.00	4.18
2173	2308	5.395768	CCTTTCTTCTGGAATGGTCGTAGAT	60.396	44.000	0.00	0.00	41.55	1.98
2332	2467	0.786435	AGGCCCAAAAGTCCTCCATT	59.214	50.000	0.00	0.00	0.00	3.16
2333	2468	0.040204	CAGGCCCAAAAGTCCTCCAT	59.960	55.000	0.00	0.00	0.00	3.41
2334	2469	1.460255	CAGGCCCAAAAGTCCTCCA	59.540	57.895	0.00	0.00	0.00	3.86
2335	2470	1.304464	CCAGGCCCAAAAGTCCTCC	60.304	63.158	0.00	0.00	0.00	4.30
2336	2471	0.609406	GACCAGGCCCAAAAGTCCTC	60.609	60.000	0.00	0.00	0.00	3.71
2337	2472	1.360393	TGACCAGGCCCAAAAGTCCT	61.360	55.000	0.00	0.00	0.00	3.85
2338	2473	0.895559	CTGACCAGGCCCAAAAGTCC	60.896	60.000	0.00	0.00	0.00	3.85
2339	2474	0.110486	TCTGACCAGGCCCAAAAGTC	59.890	55.000	0.00	0.00	0.00	3.01
2340	2475	0.555769	TTCTGACCAGGCCCAAAAGT	59.444	50.000	0.00	0.00	0.00	2.66
2341	2476	1.202927	TCTTCTGACCAGGCCCAAAAG	60.203	52.381	0.00	0.00	0.00	2.27
2342	2477	0.850100	TCTTCTGACCAGGCCCAAAA	59.150	50.000	0.00	0.00	0.00	2.44
2343	2478	0.850100	TTCTTCTGACCAGGCCCAAA	59.150	50.000	0.00	0.00	0.00	3.28
2344	2479	0.850100	TTTCTTCTGACCAGGCCCAA	59.150	50.000	0.00	0.00	0.00	4.12
2345	2480	0.401738	CTTTCTTCTGACCAGGCCCA	59.598	55.000	0.00	0.00	0.00	5.36
2346	2481	0.322906	CCTTTCTTCTGACCAGGCCC	60.323	60.000	0.00	0.00	0.00	5.80
2347	2482	0.693049	TCCTTTCTTCTGACCAGGCC	59.307	55.000	0.00	0.00	0.00	5.19
2348	2483	1.339535	CCTCCTTTCTTCTGACCAGGC	60.340	57.143	0.00	0.00	0.00	4.85
2349	2484	1.280421	CCCTCCTTTCTTCTGACCAGG	59.720	57.143	0.00	0.00	0.00	4.45
2350	2485	1.280421	CCCCTCCTTTCTTCTGACCAG	59.720	57.143	0.00	0.00	0.00	4.00
2351	2486	1.362224	CCCCTCCTTTCTTCTGACCA	58.638	55.000	0.00	0.00	0.00	4.02
2352	2487	0.621082	CCCCCTCCTTTCTTCTGACC	59.379	60.000	0.00	0.00	0.00	4.02
2353	2488	1.657804	TCCCCCTCCTTTCTTCTGAC	58.342	55.000	0.00	0.00	0.00	3.51
2354	2489	2.433444	TTCCCCCTCCTTTCTTCTGA	57.567	50.000	0.00	0.00	0.00	3.27

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.