AutoCloner

Multiple sequence alignment - TraesCS6B01G043700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6B01G043700	chr6B	100.000	2888	0	0	1	2888	26499796	26502683	0.000000e+00	5334
1	TraesCS6B01G043700	chr6B	83.822	1910	261	30	715	2583	26488590	26490492	0.000000e+00	1772
2	TraesCS6B01G043700	chr6B	82.607	2064	271	41	864	2888	28730858	28728844	0.000000e+00	1742
3	TraesCS6B01G043700	chr6B	94.126	749	19	2	1	724	599875008	599874260	0.000000e+00	1116
4	TraesCS6B01G043700	chr6B	80.702	1425	234	32	715	2127	27065971	27064576	0.000000e+00	1070
5	TraesCS6B01G043700	chr6D	85.760	2198	254	25	735	2888	14437690	14439872	0.000000e+00	2270
6	TraesCS6B01G043700	chr6D	84.866	2207	278	28	730	2888	14483695	14485893	0.000000e+00	2174
7	TraesCS6B01G043700	chr6D	82.097	1240	204	12	715	1942	14727341	14726108	0.000000e+00	1044
8	TraesCS6B01G043700	chr6D	79.971	1403	254	22	742	2126	15344826	15343433	0.000000e+00	1009
9	TraesCS6B01G043700	chr6D	80.696	1321	233	17	717	2024	14503345	14504656	0.000000e+00	1007
10	TraesCS6B01G043700	chr6D	83.825	983	75	33	1934	2888	16376583	16377509	0.000000e+00	857
11	TraesCS6B01G043700	chr5D	86.039	2070	256	20	715	2756	27985499	27983435	0.000000e+00	2191
12	TraesCS6B01G043700	chr5D	85.120	1082	157	3	794	1872	27979241	27978161	0.000000e+00	1103
13	TraesCS6B01G043700	chr6A	84.785	2228	279	31	715	2888	15684844	15687065	0.000000e+00	2182
14	TraesCS6B01G043700	chr6A	79.874	1431	251	25	716	2127	15694596	15696008	0.000000e+00	1013
15	TraesCS6B01G043700	chr6A	84.167	960	105	26	1921	2849	15924012	15923069	0.000000e+00	887
16	TraesCS6B01G043700	chr6A	81.501	573	49	23	2089	2616	15688331	15688891	4.450000e-113	418
17	TraesCS6B01G043700	chr6A	88.664	247	23	2	2646	2888	16652588	16652833	2.180000e-76	296
18	TraesCS6B01G043700	chr3B	96.255	721	22	3	1	717	604268201	604268920	0.000000e+00	1177
19	TraesCS6B01G043700	chr1B	81.774	1432	233	21	715	2127	48062363	48060941	0.000000e+00	1173
20	TraesCS6B01G043700	chr1B	95.286	700	20	11	18	710	571424603	571425296	0.000000e+00	1098
21	TraesCS6B01G043700	chr4B	95.479	730	20	2	1	717	396488317	396487588	0.000000e+00	1153
22	TraesCS6B01G043700	chr4B	94.973	736	13	1	1	712	310255677	310254942	0.000000e+00	1133
23	TraesCS6B01G043700	chr2B	94.474	742	17	1	1	718	549351058	549350317	0.000000e+00	1122
24	TraesCS6B01G043700	chr2B	94.301	737	17	2	1	713	68143175	68142440	0.000000e+00	1105
25	TraesCS6B01G043700	chr5B	93.943	743	21	1	1	719	709188219	709188961	0.000000e+00	1101
26	TraesCS6B01G043700	chr5B	95.265	697	27	5	18	712	701833546	701834238	0.000000e+00	1099

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6B01G043700	chr6B	26499796	26502683	2887	False	5334	5334	100.000	1	2888	1	chr6B.!!$F2	2887
1	TraesCS6B01G043700	chr6B	26488590	26490492	1902	False	1772	1772	83.822	715	2583	1	chr6B.!!$F1	1868
2	TraesCS6B01G043700	chr6B	28728844	28730858	2014	True	1742	1742	82.607	864	2888	1	chr6B.!!$R2	2024
3	TraesCS6B01G043700	chr6B	599874260	599875008	748	True	1116	1116	94.126	1	724	1	chr6B.!!$R3	723
4	TraesCS6B01G043700	chr6B	27064576	27065971	1395	True	1070	1070	80.702	715	2127	1	chr6B.!!$R1	1412
5	TraesCS6B01G043700	chr6D	14437690	14439872	2182	False	2270	2270	85.760	735	2888	1	chr6D.!!$F1	2153
6	TraesCS6B01G043700	chr6D	14483695	14485893	2198	False	2174	2174	84.866	730	2888	1	chr6D.!!$F2	2158
7	TraesCS6B01G043700	chr6D	14726108	14727341	1233	True	1044	1044	82.097	715	1942	1	chr6D.!!$R1	1227
8	TraesCS6B01G043700	chr6D	15343433	15344826	1393	True	1009	1009	79.971	742	2126	1	chr6D.!!$R2	1384
9	TraesCS6B01G043700	chr6D	14503345	14504656	1311	False	1007	1007	80.696	717	2024	1	chr6D.!!$F3	1307
10	TraesCS6B01G043700	chr6D	16376583	16377509	926	False	857	857	83.825	1934	2888	1	chr6D.!!$F4	954
11	TraesCS6B01G043700	chr5D	27983435	27985499	2064	True	2191	2191	86.039	715	2756	1	chr5D.!!$R2	2041
12	TraesCS6B01G043700	chr5D	27978161	27979241	1080	True	1103	1103	85.120	794	1872	1	chr5D.!!$R1	1078
13	TraesCS6B01G043700	chr6A	15684844	15688891	4047	False	1300	2182	83.143	715	2888	2	chr6A.!!$F3	2173
14	TraesCS6B01G043700	chr6A	15694596	15696008	1412	False	1013	1013	79.874	716	2127	1	chr6A.!!$F1	1411
15	TraesCS6B01G043700	chr6A	15923069	15924012	943	True	887	887	84.167	1921	2849	1	chr6A.!!$R1	928
16	TraesCS6B01G043700	chr3B	604268201	604268920	719	False	1177	1177	96.255	1	717	1	chr3B.!!$F1	716
17	TraesCS6B01G043700	chr1B	48060941	48062363	1422	True	1173	1173	81.774	715	2127	1	chr1B.!!$R1	1412
18	TraesCS6B01G043700	chr1B	571424603	571425296	693	False	1098	1098	95.286	18	710	1	chr1B.!!$F1	692
19	TraesCS6B01G043700	chr4B	396487588	396488317	729	True	1153	1153	95.479	1	717	1	chr4B.!!$R2	716
20	TraesCS6B01G043700	chr4B	310254942	310255677	735	True	1133	1133	94.973	1	712	1	chr4B.!!$R1	711
21	TraesCS6B01G043700	chr2B	549350317	549351058	741	True	1122	1122	94.474	1	718	1	chr2B.!!$R2	717
22	TraesCS6B01G043700	chr2B	68142440	68143175	735	True	1105	1105	94.301	1	713	1	chr2B.!!$R1	712
23	TraesCS6B01G043700	chr5B	709188219	709188961	742	False	1101	1101	93.943	1	719	1	chr5B.!!$F2	718
24	TraesCS6B01G043700	chr5B	701833546	701834238	692	False	1099	1099	95.265	18	712	1	chr5B.!!$F1	694

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
848	929	1.110518	GCCCCGTTTCCTCAAACCAA	61.111	55.0	0.0	0.0	39.07	3.67	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2130	2265	0.612229	CCATGAGAGCAGACCACACT	59.388	55.0	0.0	0.0	0.0	3.55	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
236	285	8.537223	CAAATCAACACAAAACAAAGATCTCAG	58.463	33.333	0.00	0.00	0.00	3.35
847	928	1.529713	GCCCCGTTTCCTCAAACCA	60.530	57.895	0.00	0.00	39.07	3.67
848	929	1.110518	GCCCCGTTTCCTCAAACCAA	61.111	55.000	0.00	0.00	39.07	3.67
866	950	4.208686	GGCTTCGCCGTCGAGGAT	62.209	66.667	0.97	0.00	46.34	3.24
1040	1124	1.122019	AAGACCCGCAGTTCCTCTGT	61.122	55.000	0.00	0.00	45.23	3.41
1058	1142	1.895798	TGTGCCAAAGTGGACAAAACA	59.104	42.857	0.00	0.00	40.96	2.83
1194	1278	1.361543	ACTACTACCTGCCCCTCTTCA	59.638	52.381	0.00	0.00	0.00	3.02
1282	1372	1.686052	GGTTGTCAAAGCCCAATGTCA	59.314	47.619	0.00	0.00	0.00	3.58
1327	1420	2.493278	GGTGCTTGTGATATTGCCAAGT	59.507	45.455	10.03	0.00	38.24	3.16
1417	1510	1.683365	GGTCTAGGTGTGCCCCGTA	60.683	63.158	0.00	0.00	34.57	4.02
1422	1515	2.791613	TAGGTGTGCCCCGTAGCTCA	62.792	60.000	0.00	0.00	34.10	4.26
1432	1525	1.068741	CCCGTAGCTCAGGTATGTTCC	59.931	57.143	2.45	0.00	0.00	3.62
1457	1550	1.866059	CATTGCACGCTGTCGCATG	60.866	57.895	0.00	0.00	38.10	4.06
1461	1554	2.481919	CACGCTGTCGCATGCATT	59.518	55.556	19.57	0.00	39.84	3.56
1477	1570	5.754778	CATGCATTAGCGATGAAAAGATCA	58.245	37.500	0.00	0.00	46.23	2.92
1479	1572	4.877823	TGCATTAGCGATGAAAAGATCACT	59.122	37.500	7.22	0.00	46.23	3.41
1482	1575	1.662629	AGCGATGAAAAGATCACTGCG	59.337	47.619	0.00	0.00	43.04	5.18
1488	1581	5.062183	CGATGAAAAGATCACTGCGAAAGTA	59.938	40.000	0.00	0.00	41.93	2.24
1509	1602	7.976135	AGTAGACTACTTGAAGAAGACGTTA	57.024	36.000	9.45	0.00	34.86	3.18
1524	1617	0.999406	CGTTAAGGTGGTCTGATGCG	59.001	55.000	0.00	0.00	0.00	4.73
1566	1659	2.981302	CATCCGGGTGTGCTGAGA	59.019	61.111	6.53	0.00	0.00	3.27
1588	1681	7.072263	AGAAAGTCAAAGGAATCTCTGAAGA	57.928	36.000	0.00	0.00	35.54	2.87
1597	1690	2.244486	ATCTCTGAAGAGCAGGTCCA	57.756	50.000	2.26	0.00	44.98	4.02
1677	1770	2.043227	CTTAGTCTTAGCCTGGAGGGG	58.957	57.143	0.00	0.00	35.18	4.79
1702	1795	1.278985	TCAGACCCTGGCACTATGTTG	59.721	52.381	0.00	0.00	31.51	3.33
1728	1821	7.928167	GTCAAGTTTCTCAAGGAAAATGGATTT	59.072	33.333	0.00	0.00	41.83	2.17
1815	1908	2.877097	TATGCCCTCACAAGAAAGCA	57.123	45.000	0.00	0.00	36.60	3.91
1867	1960	3.373565	GCAAAGGGGAAGTGCCGG	61.374	66.667	0.00	0.00	37.63	6.13
1877	1970	1.816224	GGAAGTGCCGGCTAATTTCAA	59.184	47.619	29.70	0.07	0.00	2.69
1900	1993	7.286546	TCAAATTTACATGAACCAAGAACAGGA	59.713	33.333	0.00	0.00	0.00	3.86
1907	2000	6.600822	ACATGAACCAAGAACAGGATATGAAG	59.399	38.462	0.00	0.00	0.00	3.02
1916	2010	9.347240	CAAGAACAGGATATGAAGATTGGTAAT	57.653	33.333	0.00	0.00	0.00	1.89
1919	2013	9.125026	GAACAGGATATGAAGATTGGTAATGTT	57.875	33.333	0.00	0.00	0.00	2.71
1942	2040	1.486439	ATGGCGCAACAAAGTTTTCG	58.514	45.000	10.83	0.00	0.00	3.46
1943	2041	0.171455	TGGCGCAACAAAGTTTTCGT	59.829	45.000	10.83	0.00	0.00	3.85
1954	2052	6.103222	ACAAAGTTTTCGTTCTGTGTAGTC	57.897	37.500	0.00	0.00	31.31	2.59
1969	2072	5.387788	TGTGTAGTCAACTGGTAACTCCTA	58.612	41.667	0.00	0.00	37.07	2.94
1987	2090	2.483188	CCTACTTCGGTGTTCTATGCCC	60.483	54.545	0.00	0.00	0.00	5.36
1990	2094	2.026262	ACTTCGGTGTTCTATGCCCAAT	60.026	45.455	0.00	0.00	0.00	3.16
1996	2100	3.706086	GGTGTTCTATGCCCAATTGGATT	59.294	43.478	26.60	11.97	37.39	3.01
2010	2114	6.229733	CCAATTGGATTTTGGCTGTCTTTTA	58.770	36.000	20.50	0.00	37.42	1.52
2029	2133	9.204570	GTCTTTTATAGTGTGTCTGTTACATGT	57.795	33.333	2.69	2.69	41.10	3.21
2036	2152	5.523916	AGTGTGTCTGTTACATGTCAGTTTC	59.476	40.000	0.00	1.67	41.10	2.78
2037	2153	5.293324	GTGTGTCTGTTACATGTCAGTTTCA	59.707	40.000	0.00	4.10	41.10	2.69
2065	2186	5.161358	TGCTAACTCTTGACGTAACTGATG	58.839	41.667	0.00	0.00	0.00	3.07
2081	2203	7.065085	CGTAACTGATGAATTGATTCCTGAACT	59.935	37.037	1.56	0.00	35.97	3.01
2108	2233	3.713858	TGCTGTTGTTGTCATTCCTTG	57.286	42.857	0.00	0.00	0.00	3.61
2117	2242	5.005740	TGTTGTCATTCCTTGGAGAAGATG	58.994	41.667	0.00	0.00	0.00	2.90
2119	2254	5.246981	TGTCATTCCTTGGAGAAGATGTT	57.753	39.130	0.00	0.00	0.00	2.71
2127	2262	8.704849	TTCCTTGGAGAAGATGTTTGAAAATA	57.295	30.769	0.00	0.00	0.00	1.40
2128	2263	8.884124	TCCTTGGAGAAGATGTTTGAAAATAT	57.116	30.769	0.00	0.00	0.00	1.28
2129	2264	8.960591	TCCTTGGAGAAGATGTTTGAAAATATC	58.039	33.333	4.80	4.80	36.95	1.63
2130	2265	8.742777	CCTTGGAGAAGATGTTTGAAAATATCA	58.257	33.333	13.03	0.00	38.51	2.15
2131	2266	9.784680	CTTGGAGAAGATGTTTGAAAATATCAG	57.215	33.333	13.03	0.00	39.77	2.90
2132	2267	8.868522	TGGAGAAGATGTTTGAAAATATCAGT	57.131	30.769	13.03	3.05	39.77	3.41
2143	2278	4.937620	TGAAAATATCAGTGTGGTCTGCTC	59.062	41.667	0.00	0.00	35.63	4.26
2151	2286	1.812922	GTGGTCTGCTCTCATGGCG	60.813	63.158	0.00	0.00	0.00	5.69
2170	2305	3.308866	GGCGACGTTTATCTAGCATGTTT	59.691	43.478	0.00	0.00	0.00	2.83
2178	2313	7.040686	ACGTTTATCTAGCATGTTTCCTTTTGT	60.041	33.333	0.00	0.00	0.00	2.83
2701	2867	2.821546	CCTTGAAACGACACTGAGACA	58.178	47.619	0.00	0.00	0.00	3.41
2784	2964	6.564709	TTTAAGAGTTGCTCGACTAGTACA	57.435	37.500	0.00	0.00	35.36	2.90
2815	2995	3.997762	ACCAAACTAGTGTCGCAACATA	58.002	40.909	0.00	0.00	37.81	2.29
2821	3001	2.760634	AGTGTCGCAACATATCCACA	57.239	45.000	0.00	0.00	37.81	4.17
2855	3035	1.202348	GGCACTTGTAATCCTTGGTGC	59.798	52.381	7.25	7.25	46.02	5.01
2880	3060	7.383572	GCTTAGTGATGTATGTATCTGTTCTGG	59.616	40.741	0.00	0.00	0.00	3.86

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
33	34	4.451309	AGGGGTTATGGTTAGGGTTAGTT	58.549	43.478	0.00	0.00	0.00	2.24
173	222	4.986054	ACCCTAGGTGTTGATGTTGTTA	57.014	40.909	8.29	0.00	32.98	2.41
236	285	1.937191	TCCCCCTTCTTTTGATTGGC	58.063	50.000	0.00	0.00	0.00	4.52
1040	1124	2.094286	CAGTGTTTTGTCCACTTTGGCA	60.094	45.455	0.00	0.00	41.10	4.92
1194	1278	1.073897	GGAAGTTGTGGCAGGAGCT	59.926	57.895	0.00	0.00	41.70	4.09
1271	1361	1.843368	CAGGAACATGACATTGGGCT	58.157	50.000	0.00	0.00	0.00	5.19
1327	1420	0.389296	CTCGGCACACGGATACACAA	60.389	55.000	0.00	0.00	44.45	3.33
1374	1467	3.126879	CATGCCACCATCGTGCGT	61.127	61.111	0.00	0.00	38.79	5.24
1417	1510	1.568504	TTCCGGAACATACCTGAGCT	58.431	50.000	14.35	0.00	0.00	4.09
1422	1515	3.016736	CAATGCTTTCCGGAACATACCT	58.983	45.455	18.64	0.48	0.00	3.08
1457	1550	5.203370	CAGTGATCTTTTCATCGCTAATGC	58.797	41.667	0.00	0.00	40.90	3.56
1459	1552	4.025396	CGCAGTGATCTTTTCATCGCTAAT	60.025	41.667	0.00	0.00	40.90	1.73
1461	1554	2.860136	CGCAGTGATCTTTTCATCGCTA	59.140	45.455	0.00	0.00	40.90	4.26
1467	1560	5.405571	GTCTACTTTCGCAGTGATCTTTTCA	59.594	40.000	0.00	0.00	35.97	2.69
1470	1563	5.140747	AGTCTACTTTCGCAGTGATCTTT	57.859	39.130	0.00	0.00	35.97	2.52
1477	1570	5.241064	TCTTCAAGTAGTCTACTTTCGCAGT	59.759	40.000	20.51	0.00	46.27	4.40
1479	1572	5.700722	TCTTCAAGTAGTCTACTTTCGCA	57.299	39.130	20.51	5.15	46.27	5.10
1482	1575	7.361894	ACGTCTTCTTCAAGTAGTCTACTTTC	58.638	38.462	20.51	5.62	46.27	2.62
1488	1581	6.264970	ACCTTAACGTCTTCTTCAAGTAGTCT	59.735	38.462	0.00	0.00	0.00	3.24
1503	1596	2.000447	GCATCAGACCACCTTAACGTC	59.000	52.381	0.00	0.00	0.00	4.34
1509	1602	0.036010	CTTCCGCATCAGACCACCTT	60.036	55.000	0.00	0.00	0.00	3.50
1524	1617	1.136147	CACAGCAATGCTCGCTTCC	59.864	57.895	4.03	0.00	37.72	3.46
1549	1642	0.321564	TTTCTCAGCACACCCGGATG	60.322	55.000	0.73	0.00	0.00	3.51
1566	1659	5.704978	GCTCTTCAGAGATTCCTTTGACTTT	59.295	40.000	8.09	0.00	44.74	2.66
1588	1681	2.736670	AACAAGAACTTGGACCTGCT	57.263	45.000	17.05	0.00	44.45	4.24
1597	1690	6.636454	TCCCACCTCATATAACAAGAACTT	57.364	37.500	0.00	0.00	0.00	2.66
1690	1783	4.460263	AGAAACTTGACAACATAGTGCCA	58.540	39.130	0.00	0.00	0.00	4.92
1693	1786	6.483307	TCCTTGAGAAACTTGACAACATAGTG	59.517	38.462	0.00	0.00	0.00	2.74
1702	1795	6.391227	TCCATTTTCCTTGAGAAACTTGAC	57.609	37.500	0.00	0.00	44.20	3.18
1728	1821	0.748367	AGCTCAGGTCGCGATCTACA	60.748	55.000	23.68	10.85	0.00	2.74
1815	1908	3.231889	CTCAGCGAGGTGTGGTGCT	62.232	63.158	2.10	0.00	38.43	4.40
1877	1970	7.781324	ATCCTGTTCTTGGTTCATGTAAATT	57.219	32.000	0.00	0.00	0.00	1.82
1907	2000	4.041723	GCGCCATACAAACATTACCAATC	58.958	43.478	0.00	0.00	0.00	2.67
1916	2010	2.099921	ACTTTGTTGCGCCATACAAACA	59.900	40.909	21.25	14.34	38.82	2.83
1919	2013	3.444703	AAACTTTGTTGCGCCATACAA	57.555	38.095	4.18	10.36	32.76	2.41
1942	2040	5.598769	AGTTACCAGTTGACTACACAGAAC	58.401	41.667	0.00	0.00	0.00	3.01
1943	2041	5.221382	GGAGTTACCAGTTGACTACACAGAA	60.221	44.000	0.00	0.00	38.79	3.02
1954	2052	3.257624	ACCGAAGTAGGAGTTACCAGTTG	59.742	47.826	0.00	0.00	42.04	3.16
1969	2072	0.981183	TGGGCATAGAACACCGAAGT	59.019	50.000	0.00	0.00	0.00	3.01
1987	2090	7.910441	ATAAAAGACAGCCAAAATCCAATTG	57.090	32.000	0.00	0.00	0.00	2.32
1990	2094	7.232534	ACACTATAAAAGACAGCCAAAATCCAA	59.767	33.333	0.00	0.00	0.00	3.53
1996	2100	6.204688	CAGACACACTATAAAAGACAGCCAAA	59.795	38.462	0.00	0.00	0.00	3.28
2010	2114	6.346477	ACTGACATGTAACAGACACACTAT	57.654	37.500	18.60	0.00	42.17	2.12
2029	2133	6.936335	TCAAGAGTTAGCAATGATGAAACTGA	59.064	34.615	0.00	0.00	35.61	3.41
2036	2152	6.311445	AGTTACGTCAAGAGTTAGCAATGATG	59.689	38.462	0.00	0.00	34.12	3.07
2037	2153	6.311445	CAGTTACGTCAAGAGTTAGCAATGAT	59.689	38.462	0.00	0.00	0.00	2.45
2065	2186	7.444792	AGCATATCAGAGTTCAGGAATCAATTC	59.555	37.037	0.00	0.00	36.08	2.17
2081	2203	5.355071	GGAATGACAACAACAGCATATCAGA	59.645	40.000	0.00	0.00	0.00	3.27
2108	2233	8.734386	ACACTGATATTTTCAAACATCTTCTCC	58.266	33.333	0.00	0.00	32.78	3.71
2117	2242	5.858581	GCAGACCACACTGATATTTTCAAAC	59.141	40.000	0.00	0.00	39.94	2.93
2119	2254	5.316167	AGCAGACCACACTGATATTTTCAA	58.684	37.500	0.00	0.00	39.94	2.69
2127	2262	1.637338	TGAGAGCAGACCACACTGAT	58.363	50.000	0.00	0.00	39.94	2.90
2128	2263	1.274447	CATGAGAGCAGACCACACTGA	59.726	52.381	0.00	0.00	39.94	3.41
2129	2264	1.675116	CCATGAGAGCAGACCACACTG	60.675	57.143	0.00	0.00	40.43	3.66
2130	2265	0.612229	CCATGAGAGCAGACCACACT	59.388	55.000	0.00	0.00	0.00	3.55
2131	2266	1.023513	GCCATGAGAGCAGACCACAC	61.024	60.000	0.00	0.00	0.00	3.82
2132	2267	1.297689	GCCATGAGAGCAGACCACA	59.702	57.895	0.00	0.00	0.00	4.17
2143	2278	2.726760	GCTAGATAAACGTCGCCATGAG	59.273	50.000	0.00	0.00	0.00	2.90
2151	2286	6.663944	AAGGAAACATGCTAGATAAACGTC	57.336	37.500	0.00	0.00	0.00	4.34
2170	2305	9.883142	ACTGAAAATACAATGAAAACAAAAGGA	57.117	25.926	0.00	0.00	0.00	3.36
2266	2417	5.650543	ACTGAACATTGAACCACAAACTTC	58.349	37.500	0.00	0.00	42.03	3.01
2603	2769	8.200120	TCACTGAATTGTAGACAGATATGAAGG	58.800	37.037	0.00	0.00	35.85	3.46
2666	2832	2.795329	TCAAGGCAGAAAACTGGGATC	58.205	47.619	0.00	0.00	0.00	3.36
2784	2964	4.207165	ACACTAGTTTGGTTGCAAGACAT	58.793	39.130	0.00	0.00	0.00	3.06
2815	2995	2.351276	GGGCACCGACTTGTGGAT	59.649	61.111	0.00	0.00	40.86	3.41
2855	3035	8.417106	ACCAGAACAGATACATACATCACTAAG	58.583	37.037	0.00	0.00	0.00	2.18

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.