Multiple sequence alignment - TraesCS6B01G043000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G043000 chr6B 100.000 2388 0 0 816 3203 26247862 26250249 0.000000e+00 4410.0
1 TraesCS6B01G043000 chr6B 90.103 1556 144 7 954 2507 26856909 26855362 0.000000e+00 2012.0
2 TraesCS6B01G043000 chr6B 89.885 1562 142 8 954 2507 26842017 26840464 0.000000e+00 1995.0
3 TraesCS6B01G043000 chr6B 80.983 1709 266 24 989 2666 26291295 26292975 0.000000e+00 1301.0
4 TraesCS6B01G043000 chr6B 100.000 478 0 0 1 478 26247047 26247524 0.000000e+00 883.0
5 TraesCS6B01G043000 chr6B 83.146 445 54 14 2778 3203 26855288 26854846 1.390000e-103 387.0
6 TraesCS6B01G043000 chr6B 82.379 454 59 14 2769 3203 26840399 26839948 3.020000e-100 375.0
7 TraesCS6B01G043000 chr6B 92.188 128 9 1 954 1080 26007633 26007506 2.540000e-41 180.0
8 TraesCS6B01G043000 chr6B 95.604 91 4 0 2811 2901 31655740 31655650 2.570000e-31 147.0
9 TraesCS6B01G043000 chr6B 92.079 101 3 3 834 932 26842184 26842087 1.550000e-28 137.0
10 TraesCS6B01G043000 chr6B 82.278 79 7 5 400 478 493347965 493347894 9.590000e-06 62.1
11 TraesCS6B01G043000 chr6D 84.494 1651 205 26 1069 2677 14422124 14423765 0.000000e+00 1583.0
12 TraesCS6B01G043000 chr6D 81.772 1366 218 29 1069 2422 15344788 15343442 0.000000e+00 1114.0
13 TraesCS6B01G043000 chr6D 81.306 1225 201 27 1074 2285 14727274 14726065 0.000000e+00 968.0
14 TraesCS6B01G043000 chr6D 79.093 1478 246 40 953 2419 14503309 14504734 0.000000e+00 959.0
15 TraesCS6B01G043000 chr6D 81.929 1151 193 12 1092 2236 14941088 14939947 0.000000e+00 959.0
16 TraesCS6B01G043000 chr6D 88.889 441 37 6 2767 3203 14424106 14424538 1.690000e-147 532.0
17 TraesCS6B01G043000 chr6D 90.683 161 11 3 2520 2677 14423952 14424111 9.000000e-51 211.0
18 TraesCS6B01G043000 chr6D 88.652 141 13 3 2501 2639 14463362 14463501 5.500000e-38 169.0
19 TraesCS6B01G043000 chr6D 87.500 136 15 2 2767 2901 14423760 14423894 4.280000e-34 156.0
20 TraesCS6B01G043000 chr6D 86.667 135 14 3 2767 2901 14463648 14463778 2.570000e-31 147.0
21 TraesCS6B01G043000 chr6D 87.603 121 13 2 3085 3203 14406007 14406127 4.310000e-29 139.0
22 TraesCS6B01G043000 chr6A 81.205 1527 231 29 989 2507 15647275 15648753 0.000000e+00 1179.0
23 TraesCS6B01G043000 chr6A 79.631 1463 252 38 973 2422 15684834 15686263 0.000000e+00 1009.0
24 TraesCS6B01G043000 chr6A 82.007 1156 195 11 1092 2242 15925167 15924020 0.000000e+00 970.0
25 TraesCS6B01G043000 chr6A 77.600 375 45 24 2848 3203 15931956 15931602 1.170000e-44 191.0
26 TraesCS6B01G043000 chr1B 90.680 397 11 5 2304 2676 633593705 633593311 3.690000e-139 505.0
27 TraesCS6B01G043000 chr1B 96.296 135 4 1 2767 2901 633593315 633593182 1.500000e-53 220.0
28 TraesCS6B01G043000 chr7D 85.373 335 42 7 1 332 508695147 508695477 1.100000e-89 340.0
29 TraesCS6B01G043000 chr7D 80.451 133 19 5 346 478 552946220 552946345 9.460000e-16 95.3
30 TraesCS6B01G043000 chr4D 85.455 330 41 7 1 326 77037146 77037472 1.420000e-88 337.0
31 TraesCS6B01G043000 chr4D 84.211 133 17 3 346 478 77037529 77037657 3.350000e-25 126.0
32 TraesCS6B01G043000 chr2D 85.152 330 42 7 1 326 53176657 53176983 6.620000e-87 331.0
33 TraesCS6B01G043000 chr2D 84.211 133 17 3 346 478 53177040 53177168 3.350000e-25 126.0
34 TraesCS6B01G043000 chrUn 83.191 351 39 13 2866 3197 261310348 261310697 1.440000e-78 303.0
35 TraesCS6B01G043000 chr4B 98.000 100 2 0 2670 2769 658978258 658978357 1.180000e-39 174.0
36 TraesCS6B01G043000 chr3A 98.000 100 2 0 2671 2770 572598543 572598444 1.180000e-39 174.0
37 TraesCS6B01G043000 chr3A 97.980 99 2 0 2672 2770 692869666 692869568 4.250000e-39 172.0
38 TraesCS6B01G043000 chr3A 91.667 120 6 4 2672 2790 581268785 581268669 2.560000e-36 163.0
39 TraesCS6B01G043000 chr2B 96.190 105 4 0 2664 2768 440223871 440223767 4.250000e-39 172.0
40 TraesCS6B01G043000 chr3D 97.030 101 3 0 2669 2769 462197411 462197511 1.530000e-38 171.0
41 TraesCS6B01G043000 chr1D 92.308 117 8 1 2653 2768 472174419 472174535 7.110000e-37 165.0
42 TraesCS6B01G043000 chr2A 95.960 99 4 0 2671 2769 13287402 13287304 9.200000e-36 161.0
43 TraesCS6B01G043000 chr2A 92.174 115 7 2 2657 2769 704122479 704122593 9.200000e-36 161.0
44 TraesCS6B01G043000 chr5D 82.308 130 18 5 3075 3201 377305246 377305373 1.210000e-19 108.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G043000 chr6B 26247047 26250249 3202 False 2646.500000 4410 100.000000 1 3203 2 chr6B.!!$F2 3202
1 TraesCS6B01G043000 chr6B 26291295 26292975 1680 False 1301.000000 1301 80.983000 989 2666 1 chr6B.!!$F1 1677
2 TraesCS6B01G043000 chr6B 26854846 26856909 2063 True 1199.500000 2012 86.624500 954 3203 2 chr6B.!!$R5 2249
3 TraesCS6B01G043000 chr6B 26839948 26842184 2236 True 835.666667 1995 88.114333 834 3203 3 chr6B.!!$R4 2369
4 TraesCS6B01G043000 chr6D 15343442 15344788 1346 True 1114.000000 1114 81.772000 1069 2422 1 chr6D.!!$R3 1353
5 TraesCS6B01G043000 chr6D 14726065 14727274 1209 True 968.000000 968 81.306000 1074 2285 1 chr6D.!!$R1 1211
6 TraesCS6B01G043000 chr6D 14503309 14504734 1425 False 959.000000 959 79.093000 953 2419 1 chr6D.!!$F2 1466
7 TraesCS6B01G043000 chr6D 14939947 14941088 1141 True 959.000000 959 81.929000 1092 2236 1 chr6D.!!$R2 1144
8 TraesCS6B01G043000 chr6D 14422124 14424538 2414 False 620.500000 1583 87.891500 1069 3203 4 chr6D.!!$F3 2134
9 TraesCS6B01G043000 chr6A 15647275 15648753 1478 False 1179.000000 1179 81.205000 989 2507 1 chr6A.!!$F1 1518
10 TraesCS6B01G043000 chr6A 15684834 15686263 1429 False 1009.000000 1009 79.631000 973 2422 1 chr6A.!!$F2 1449
11 TraesCS6B01G043000 chr6A 15924020 15925167 1147 True 970.000000 970 82.007000 1092 2242 1 chr6A.!!$R1 1150
12 TraesCS6B01G043000 chr1B 633593182 633593705 523 True 362.500000 505 93.488000 2304 2901 2 chr1B.!!$R1 597
13 TraesCS6B01G043000 chr4D 77037146 77037657 511 False 231.500000 337 84.833000 1 478 2 chr4D.!!$F1 477
14 TraesCS6B01G043000 chr2D 53176657 53177168 511 False 228.500000 331 84.681500 1 478 2 chr2D.!!$F1 477

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
191 192 0.042581 TCAGCCCCATCACTCCACTA 59.957 55.0 0.00 0.0 0.00 2.74 F
331 333 0.109342 GCCCTGGTCATGGTATGGAG 59.891 60.0 0.00 0.0 0.00 3.86 F
332 334 0.109342 CCCTGGTCATGGTATGGAGC 59.891 60.0 0.00 0.0 0.00 4.70 F
389 428 0.397941 TGCACTTAAGAGGCTGCAGT 59.602 50.0 16.64 0.0 34.73 4.40 F
402 441 0.449388 CTGCAGTCCTCGCCAATTTC 59.551 55.0 5.25 0.0 0.00 2.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1575 1681 0.037303 ACTCCTGCAGGGACACAATG 59.963 55.000 32.23 13.88 39.58 2.82 R
1652 1758 1.152383 GATGCGCTCCGGGTTAGTTC 61.152 60.000 9.73 0.00 0.00 3.01 R
1741 1847 2.048127 GAGGAACGCGACAGCCTT 60.048 61.111 15.93 0.00 41.18 4.35 R
2035 2141 2.494059 CACATTATAGAAGCCCCGGTG 58.506 52.381 0.00 0.00 0.00 4.94 R
2252 2360 3.636764 CCAAAACAGGAACTACCAGCTTT 59.363 43.478 0.00 0.00 42.04 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 1.144708 TCCTGCTGACAAATGGGTGAA 59.855 47.619 0.00 0.00 0.00 3.18
30 31 2.762327 GACAAATGGGTGAATGATGGCT 59.238 45.455 0.00 0.00 0.00 4.75
41 42 2.885135 ATGATGGCTTGGACACTGAA 57.115 45.000 0.00 0.00 0.00 3.02
85 86 1.197721 CACAGAAATGTCGCTGGGAAC 59.802 52.381 0.00 0.00 37.75 3.62
91 92 3.379445 GTCGCTGGGAACGGGAGA 61.379 66.667 0.00 0.00 37.13 3.71
92 93 3.068691 TCGCTGGGAACGGGAGAG 61.069 66.667 0.00 0.00 37.13 3.20
94 95 3.787001 GCTGGGAACGGGAGAGGG 61.787 72.222 0.00 0.00 37.13 4.30
96 97 3.607299 TGGGAACGGGAGAGGGGA 61.607 66.667 0.00 0.00 0.00 4.81
99 100 2.059190 GGAACGGGAGAGGGGAGAC 61.059 68.421 0.00 0.00 0.00 3.36
114 115 1.623811 GGAGACCTGGTAAGCTGTCAA 59.376 52.381 0.00 0.00 0.00 3.18
115 116 2.038557 GGAGACCTGGTAAGCTGTCAAA 59.961 50.000 0.00 0.00 0.00 2.69
116 117 3.330267 GAGACCTGGTAAGCTGTCAAAG 58.670 50.000 0.00 0.00 0.00 2.77
118 119 2.038557 GACCTGGTAAGCTGTCAAAGGA 59.961 50.000 0.00 0.00 0.00 3.36
119 120 2.441750 ACCTGGTAAGCTGTCAAAGGAA 59.558 45.455 0.00 0.00 0.00 3.36
128 129 0.179059 TGTCAAAGGAACGCTGCTCA 60.179 50.000 0.00 0.00 0.00 4.26
129 130 0.235926 GTCAAAGGAACGCTGCTCAC 59.764 55.000 0.00 0.00 0.00 3.51
135 136 1.739562 GAACGCTGCTCACCTCCTG 60.740 63.158 0.00 0.00 0.00 3.86
145 146 1.920325 CACCTCCTGGAAGCCCTGA 60.920 63.158 0.00 0.00 37.04 3.86
149 150 0.325110 CTCCTGGAAGCCCTGAGAGA 60.325 60.000 0.00 0.00 35.44 3.10
151 152 0.540923 CCTGGAAGCCCTGAGAGAAG 59.459 60.000 0.00 0.00 33.65 2.85
191 192 0.042581 TCAGCCCCATCACTCCACTA 59.957 55.000 0.00 0.00 0.00 2.74
206 207 0.244994 CACTAGAGTTGCCGCTGTCT 59.755 55.000 0.00 0.00 0.00 3.41
209 210 0.898326 TAGAGTTGCCGCTGTCTCCA 60.898 55.000 0.00 0.00 0.00 3.86
218 219 1.699656 CGCTGTCTCCAATCCAAGCG 61.700 60.000 0.12 0.12 38.15 4.68
241 242 2.813754 TCAAGAGAATCAAAAGTGGCGG 59.186 45.455 0.00 0.00 37.82 6.13
251 252 1.821216 AAAGTGGCGGGTATCACAAG 58.179 50.000 0.00 0.00 36.43 3.16
253 254 1.198759 AGTGGCGGGTATCACAAGGT 61.199 55.000 0.00 0.00 36.43 3.50
269 270 0.833834 AGGTGATGGAGATAGGGGCG 60.834 60.000 0.00 0.00 0.00 6.13
271 272 1.459348 TGATGGAGATAGGGGCGCA 60.459 57.895 10.83 0.00 0.00 6.09
279 280 0.394565 GATAGGGGCGCAGATGAACT 59.605 55.000 10.83 0.00 0.00 3.01
306 307 2.105128 CGGCGCTGGAGTTCTAGG 59.895 66.667 8.83 0.00 0.00 3.02
311 312 0.970937 CGCTGGAGTTCTAGGACCCA 60.971 60.000 10.09 10.09 0.00 4.51
326 328 3.739922 CCAGCCCTGGTCATGGTA 58.260 61.111 6.15 0.00 45.53 3.25
327 329 2.234586 CCAGCCCTGGTCATGGTAT 58.765 57.895 6.15 0.00 45.53 2.73
328 330 0.179009 CCAGCCCTGGTCATGGTATG 60.179 60.000 6.15 0.00 45.53 2.39
329 331 0.179009 CAGCCCTGGTCATGGTATGG 60.179 60.000 0.00 0.00 0.00 2.74
330 332 0.327480 AGCCCTGGTCATGGTATGGA 60.327 55.000 0.00 0.00 0.00 3.41
331 333 0.109342 GCCCTGGTCATGGTATGGAG 59.891 60.000 0.00 0.00 0.00 3.86
332 334 0.109342 CCCTGGTCATGGTATGGAGC 59.891 60.000 0.00 0.00 0.00 4.70
334 336 0.752658 CTGGTCATGGTATGGAGCGA 59.247 55.000 0.00 0.00 34.39 4.93
335 337 1.138859 CTGGTCATGGTATGGAGCGAA 59.861 52.381 0.00 0.00 34.39 4.70
336 338 1.557371 TGGTCATGGTATGGAGCGAAA 59.443 47.619 0.00 0.00 34.39 3.46
365 404 4.580580 GGGAAGAAGTTATGGCCTGTAATG 59.419 45.833 3.32 0.00 0.00 1.90
366 405 5.193679 GGAAGAAGTTATGGCCTGTAATGT 58.806 41.667 3.32 0.00 0.00 2.71
377 416 5.257262 TGGCCTGTAATGTATTTGCACTTA 58.743 37.500 3.32 0.00 0.00 2.24
380 419 6.094881 GGCCTGTAATGTATTTGCACTTAAGA 59.905 38.462 10.09 0.00 0.00 2.10
382 421 7.679638 GCCTGTAATGTATTTGCACTTAAGAGG 60.680 40.741 10.09 1.93 0.00 3.69
383 422 7.083875 TGTAATGTATTTGCACTTAAGAGGC 57.916 36.000 10.09 12.68 0.00 4.70
384 423 6.884295 TGTAATGTATTTGCACTTAAGAGGCT 59.116 34.615 10.09 0.00 0.00 4.58
385 424 5.824904 ATGTATTTGCACTTAAGAGGCTG 57.175 39.130 10.09 0.00 0.00 4.85
386 425 3.440173 TGTATTTGCACTTAAGAGGCTGC 59.560 43.478 10.09 9.12 0.00 5.25
387 426 1.979855 TTTGCACTTAAGAGGCTGCA 58.020 45.000 10.09 11.78 37.86 4.41
389 428 0.397941 TGCACTTAAGAGGCTGCAGT 59.602 50.000 16.64 0.00 34.73 4.40
390 429 1.082690 GCACTTAAGAGGCTGCAGTC 58.917 55.000 11.28 11.28 0.00 3.51
391 430 1.731720 CACTTAAGAGGCTGCAGTCC 58.268 55.000 16.31 16.49 0.00 3.85
398 437 4.704833 GGCTGCAGTCCTCGCCAA 62.705 66.667 16.64 0.00 42.06 4.52
402 441 0.449388 CTGCAGTCCTCGCCAATTTC 59.551 55.000 5.25 0.00 0.00 2.17
412 451 4.410883 TCCTCGCCAATTTCCTATTTCCTA 59.589 41.667 0.00 0.00 0.00 2.94
416 455 6.891388 TCGCCAATTTCCTATTTCCTAAGTA 58.109 36.000 0.00 0.00 0.00 2.24
894 935 4.772100 CCTCAGCCCATAAAAGGAAGAAAA 59.228 41.667 0.00 0.00 0.00 2.29
895 936 5.105595 CCTCAGCCCATAAAAGGAAGAAAAG 60.106 44.000 0.00 0.00 0.00 2.27
934 984 0.951040 CCGAAACCTCAGCTCCACAC 60.951 60.000 0.00 0.00 0.00 3.82
938 988 1.344953 AACCTCAGCTCCACACACCA 61.345 55.000 0.00 0.00 0.00 4.17
945 995 0.601311 GCTCCACACACCACTCACTC 60.601 60.000 0.00 0.00 0.00 3.51
946 996 0.752658 CTCCACACACCACTCACTCA 59.247 55.000 0.00 0.00 0.00 3.41
948 998 0.465705 CCACACACCACTCACTCACT 59.534 55.000 0.00 0.00 0.00 3.41
949 999 1.575244 CACACACCACTCACTCACTG 58.425 55.000 0.00 0.00 0.00 3.66
950 1000 0.465705 ACACACCACTCACTCACTGG 59.534 55.000 0.00 0.00 0.00 4.00
1045 1136 3.615110 CGTTTCCCATATCATCTCCTCCG 60.615 52.174 0.00 0.00 0.00 4.63
1067 1158 2.575993 CACCTCTGCCGTCTCCTG 59.424 66.667 0.00 0.00 0.00 3.86
1175 1281 3.156157 AGGACTACCTCGTCGACAG 57.844 57.895 17.16 11.67 44.13 3.51
1506 1612 1.996292 TCGGCTCATTCGAGAACTTG 58.004 50.000 0.00 0.00 42.34 3.16
1524 1630 3.494336 CGCCGGCTGCTCAAGAAG 61.494 66.667 26.68 0.00 38.05 2.85
1575 1681 1.109323 ACAAGGTGCTCAAGCCCAAC 61.109 55.000 10.76 0.00 41.18 3.77
1643 1749 0.528466 CTGTGTATCAGTGCGCCGAT 60.528 55.000 4.18 7.14 39.17 4.18
1652 1758 1.956170 GTGCGCCGATGATACTGGG 60.956 63.158 4.18 0.00 0.00 4.45
1862 1968 1.068055 CAAGGCTCCAATGTTGCTGAC 60.068 52.381 0.00 0.00 0.00 3.51
1943 2049 4.377021 GAACCGGTGTATATTGCTCATCA 58.623 43.478 8.52 0.00 0.00 3.07
2001 2107 4.693283 TCAGGCCTCGATACTATGTTTTG 58.307 43.478 0.00 0.00 0.00 2.44
2031 2137 4.906618 TCAAGGAAACTGGATTGGTAGAC 58.093 43.478 0.00 0.00 42.68 2.59
2035 2141 0.252197 AACTGGATTGGTAGACCGCC 59.748 55.000 0.00 0.00 39.43 6.13
2243 2351 7.539436 TGTATTGCACAACAAAGTTTTCACTA 58.461 30.769 0.00 0.00 42.86 2.74
2252 2360 6.892658 ACAAAGTTTTCACTATGCATGGTA 57.107 33.333 15.99 0.00 30.68 3.25
2275 2386 1.886542 GCTGGTAGTTCCTGTTTTGGG 59.113 52.381 0.00 0.00 37.45 4.12
2457 2581 7.066781 TCCTGATAATTTTATTCCTGAACCCC 58.933 38.462 0.00 0.00 0.00 4.95
2458 2582 6.838612 CCTGATAATTTTATTCCTGAACCCCA 59.161 38.462 0.00 0.00 0.00 4.96
2682 3193 4.903045 TTTTGAGAATTACTCCCTCCGT 57.097 40.909 0.00 0.00 44.34 4.69
2683 3194 4.903045 TTTGAGAATTACTCCCTCCGTT 57.097 40.909 0.00 0.00 44.34 4.44
2684 3195 4.467198 TTGAGAATTACTCCCTCCGTTC 57.533 45.455 0.00 0.00 44.34 3.95
2685 3196 2.764572 TGAGAATTACTCCCTCCGTTCC 59.235 50.000 0.00 0.00 44.34 3.62
2686 3197 2.764572 GAGAATTACTCCCTCCGTTCCA 59.235 50.000 0.00 0.00 39.53 3.53
2687 3198 3.178865 AGAATTACTCCCTCCGTTCCAA 58.821 45.455 0.00 0.00 0.00 3.53
2688 3199 3.585732 AGAATTACTCCCTCCGTTCCAAA 59.414 43.478 0.00 0.00 0.00 3.28
2689 3200 4.042435 AGAATTACTCCCTCCGTTCCAAAA 59.958 41.667 0.00 0.00 0.00 2.44
2690 3201 4.586306 ATTACTCCCTCCGTTCCAAAAT 57.414 40.909 0.00 0.00 0.00 1.82
2691 3202 5.703730 ATTACTCCCTCCGTTCCAAAATA 57.296 39.130 0.00 0.00 0.00 1.40
2692 3203 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
2693 3204 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
2694 3205 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
2695 3206 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
2696 3207 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
2697 3208 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
2698 3209 3.877508 CCTCCGTTCCAAAATAGATGACC 59.122 47.826 0.00 0.00 0.00 4.02
2699 3210 3.877508 CTCCGTTCCAAAATAGATGACCC 59.122 47.826 0.00 0.00 0.00 4.46
2700 3211 3.264706 TCCGTTCCAAAATAGATGACCCA 59.735 43.478 0.00 0.00 0.00 4.51
2701 3212 4.013728 CCGTTCCAAAATAGATGACCCAA 58.986 43.478 0.00 0.00 0.00 4.12
2702 3213 4.142469 CCGTTCCAAAATAGATGACCCAAC 60.142 45.833 0.00 0.00 0.00 3.77
2703 3214 4.700213 CGTTCCAAAATAGATGACCCAACT 59.300 41.667 0.00 0.00 0.00 3.16
2704 3215 5.183140 CGTTCCAAAATAGATGACCCAACTT 59.817 40.000 0.00 0.00 0.00 2.66
2705 3216 6.294508 CGTTCCAAAATAGATGACCCAACTTT 60.295 38.462 0.00 0.00 0.00 2.66
2706 3217 7.094549 CGTTCCAAAATAGATGACCCAACTTTA 60.095 37.037 0.00 0.00 0.00 1.85
2707 3218 8.749354 GTTCCAAAATAGATGACCCAACTTTAT 58.251 33.333 0.00 0.00 0.00 1.40
2708 3219 9.983024 TTCCAAAATAGATGACCCAACTTTATA 57.017 29.630 0.00 0.00 0.00 0.98
2709 3220 9.403583 TCCAAAATAGATGACCCAACTTTATAC 57.596 33.333 0.00 0.00 0.00 1.47
2710 3221 9.408648 CCAAAATAGATGACCCAACTTTATACT 57.591 33.333 0.00 0.00 0.00 2.12
2754 3265 9.823647 AGTACATAGTTGAGTCATCTATTTTGG 57.176 33.333 17.50 10.97 27.74 3.28
2755 3266 9.817809 GTACATAGTTGAGTCATCTATTTTGGA 57.182 33.333 17.50 6.19 27.74 3.53
2757 3268 9.167311 ACATAGTTGAGTCATCTATTTTGGAAC 57.833 33.333 17.50 0.00 27.74 3.62
2758 3269 6.727824 AGTTGAGTCATCTATTTTGGAACG 57.272 37.500 1.70 0.00 0.00 3.95
2759 3270 5.643777 AGTTGAGTCATCTATTTTGGAACGG 59.356 40.000 1.70 0.00 0.00 4.44
2760 3271 5.414789 TGAGTCATCTATTTTGGAACGGA 57.585 39.130 0.00 0.00 0.00 4.69
2761 3272 5.419542 TGAGTCATCTATTTTGGAACGGAG 58.580 41.667 0.00 0.00 0.00 4.63
2762 3273 4.770795 AGTCATCTATTTTGGAACGGAGG 58.229 43.478 0.00 0.00 0.00 4.30
2763 3274 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
2765 3276 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
2771 3282 0.679002 TGGAACGGAGGGAGTACTCG 60.679 60.000 16.56 8.02 38.39 4.18
2776 3287 1.171308 CGGAGGGAGTACTCGTCAAA 58.829 55.000 16.56 0.00 38.39 2.69
2901 3414 7.121020 TCTGCACATGCTTTCTTTGTATCATTA 59.879 33.333 5.31 0.00 42.66 1.90
2902 3415 7.600960 TGCACATGCTTTCTTTGTATCATTAA 58.399 30.769 5.31 0.00 42.66 1.40
2936 3449 6.472016 TCAGTTCAATTCATGCCTTACAGTA 58.528 36.000 0.00 0.00 0.00 2.74
2937 3450 6.371548 TCAGTTCAATTCATGCCTTACAGTAC 59.628 38.462 0.00 0.00 0.00 2.73
2958 3472 3.056821 ACGTGTTCATAGCTGCAGAACTA 60.057 43.478 20.43 10.84 41.56 2.24
2977 3491 7.554959 GAACTATAGGGAGTTCCATCCAATA 57.445 40.000 4.43 0.00 46.46 1.90
3007 3523 9.733556 TGTAAACTACTGGAACAATATCATGTT 57.266 29.630 0.00 0.00 45.82 2.71
3040 3559 5.652452 GTGTCCTGGTTATATTTTGCCTCTT 59.348 40.000 0.00 0.00 0.00 2.85
3041 3560 5.652014 TGTCCTGGTTATATTTTGCCTCTTG 59.348 40.000 0.00 0.00 0.00 3.02
3069 3599 6.783708 TGTGGTCCTGTTTTTCTTGTTTAT 57.216 33.333 0.00 0.00 0.00 1.40
3071 3601 6.153680 TGTGGTCCTGTTTTTCTTGTTTATGT 59.846 34.615 0.00 0.00 0.00 2.29
3120 3652 5.221481 TGCAATCTTGTGAATTGGTTGTCAT 60.221 36.000 0.00 0.00 0.00 3.06
3126 3658 5.070770 TGTGAATTGGTTGTCATATTGCC 57.929 39.130 0.00 0.00 0.00 4.52
3142 3674 1.154150 GCCGCTGTTTGTGATCTGC 60.154 57.895 0.00 0.00 0.00 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 0.770499 TCACCCATTTGTCAGCAGGA 59.230 50.000 0.00 0.00 0.00 3.86
14 15 1.288633 TCCAAGCCATCATTCACCCAT 59.711 47.619 0.00 0.00 0.00 4.00
15 16 0.703488 TCCAAGCCATCATTCACCCA 59.297 50.000 0.00 0.00 0.00 4.51
18 19 2.163010 CAGTGTCCAAGCCATCATTCAC 59.837 50.000 0.00 0.00 0.00 3.18
22 23 2.619849 CCTTCAGTGTCCAAGCCATCAT 60.620 50.000 0.00 0.00 0.00 2.45
41 42 1.275573 GAACTTAGGCTCGGAACACCT 59.724 52.381 0.00 0.00 37.61 4.00
47 48 1.544691 GTGAGTGAACTTAGGCTCGGA 59.455 52.381 0.00 0.00 0.00 4.55
49 50 2.229062 TCTGTGAGTGAACTTAGGCTCG 59.771 50.000 0.00 0.00 0.00 5.03
85 86 2.443016 CAGGTCTCCCCTCTCCCG 60.443 72.222 0.00 0.00 43.86 5.14
92 93 0.910088 ACAGCTTACCAGGTCTCCCC 60.910 60.000 0.00 0.00 0.00 4.81
94 95 1.267121 TGACAGCTTACCAGGTCTCC 58.733 55.000 0.00 0.00 0.00 3.71
96 97 2.039084 CCTTTGACAGCTTACCAGGTCT 59.961 50.000 0.00 0.00 0.00 3.85
99 100 2.814336 GTTCCTTTGACAGCTTACCAGG 59.186 50.000 0.00 0.00 0.00 4.45
107 108 1.081840 GCAGCGTTCCTTTGACAGC 60.082 57.895 0.00 0.00 0.00 4.40
114 115 1.004440 GAGGTGAGCAGCGTTCCTT 60.004 57.895 6.73 0.00 0.00 3.36
115 116 2.659610 GAGGTGAGCAGCGTTCCT 59.340 61.111 5.25 5.25 0.00 3.36
116 117 2.435059 GGAGGTGAGCAGCGTTCC 60.435 66.667 0.00 0.00 0.00 3.62
118 119 2.345244 CAGGAGGTGAGCAGCGTT 59.655 61.111 0.00 0.00 0.00 4.84
119 120 3.699894 CCAGGAGGTGAGCAGCGT 61.700 66.667 0.00 0.00 0.00 5.07
128 129 1.614824 CTCAGGGCTTCCAGGAGGT 60.615 63.158 0.00 0.00 33.36 3.85
129 130 1.306482 TCTCAGGGCTTCCAGGAGG 60.306 63.158 0.00 0.00 35.92 4.30
135 136 0.617935 AAGCTTCTCTCAGGGCTTCC 59.382 55.000 0.00 0.00 40.40 3.46
145 146 2.617532 GGCATGGTCTTGAAGCTTCTCT 60.618 50.000 26.09 0.00 0.00 3.10
149 150 1.542492 CAGGCATGGTCTTGAAGCTT 58.458 50.000 0.00 0.00 0.00 3.74
151 152 1.509923 GCAGGCATGGTCTTGAAGC 59.490 57.895 0.00 0.00 0.00 3.86
191 192 1.758440 TTGGAGACAGCGGCAACTCT 61.758 55.000 1.45 0.00 44.54 3.24
195 196 1.377202 GGATTGGAGACAGCGGCAA 60.377 57.895 1.45 0.00 44.54 4.52
206 207 2.501316 TCTCTTGATCGCTTGGATTGGA 59.499 45.455 0.00 0.00 34.82 3.53
209 210 4.774124 TGATTCTCTTGATCGCTTGGATT 58.226 39.130 0.00 0.00 34.82 3.01
218 219 4.437930 CCGCCACTTTTGATTCTCTTGATC 60.438 45.833 0.00 0.00 0.00 2.92
251 252 1.674057 CGCCCCTATCTCCATCACC 59.326 63.158 0.00 0.00 0.00 4.02
253 254 1.459348 TGCGCCCCTATCTCCATCA 60.459 57.895 4.18 0.00 0.00 3.07
263 264 2.270205 CAGTTCATCTGCGCCCCT 59.730 61.111 4.18 0.00 37.36 4.79
271 272 1.376543 CGCCTCATTGCAGTTCATCT 58.623 50.000 0.00 0.00 0.00 2.90
288 289 2.583593 CTAGAACTCCAGCGCCGC 60.584 66.667 2.29 0.00 0.00 6.53
298 299 0.618968 CAGGGCTGGGTCCTAGAACT 60.619 60.000 6.40 0.00 34.19 3.01
311 312 0.327480 TCCATACCATGACCAGGGCT 60.327 55.000 0.00 0.00 35.25 5.19
339 341 3.076032 ACAGGCCATAACTTCTTCCCTTT 59.924 43.478 5.01 0.00 0.00 3.11
340 342 2.649816 ACAGGCCATAACTTCTTCCCTT 59.350 45.455 5.01 0.00 0.00 3.95
342 344 2.808906 ACAGGCCATAACTTCTTCCC 57.191 50.000 5.01 0.00 0.00 3.97
344 383 8.451908 AATACATTACAGGCCATAACTTCTTC 57.548 34.615 5.01 0.00 0.00 2.87
348 387 6.379703 TGCAAATACATTACAGGCCATAACTT 59.620 34.615 5.01 0.00 0.00 2.66
353 392 4.280819 AGTGCAAATACATTACAGGCCAT 58.719 39.130 5.01 0.00 0.00 4.40
357 396 7.679638 GCCTCTTAAGTGCAAATACATTACAGG 60.680 40.741 12.74 3.87 0.00 4.00
365 404 3.440173 TGCAGCCTCTTAAGTGCAAATAC 59.560 43.478 14.19 4.29 42.79 1.89
366 405 3.684908 TGCAGCCTCTTAAGTGCAAATA 58.315 40.909 14.19 0.00 42.79 1.40
382 421 1.589716 AAATTGGCGAGGACTGCAGC 61.590 55.000 15.27 6.61 0.00 5.25
383 422 0.449388 GAAATTGGCGAGGACTGCAG 59.551 55.000 13.48 13.48 0.00 4.41
384 423 0.960364 GGAAATTGGCGAGGACTGCA 60.960 55.000 0.00 0.00 0.00 4.41
385 424 0.678048 AGGAAATTGGCGAGGACTGC 60.678 55.000 0.00 0.00 0.00 4.40
386 425 2.691409 TAGGAAATTGGCGAGGACTG 57.309 50.000 0.00 0.00 0.00 3.51
387 426 3.933861 AATAGGAAATTGGCGAGGACT 57.066 42.857 0.00 0.00 0.00 3.85
389 428 3.202151 AGGAAATAGGAAATTGGCGAGGA 59.798 43.478 0.00 0.00 0.00 3.71
390 429 3.555966 AGGAAATAGGAAATTGGCGAGG 58.444 45.455 0.00 0.00 0.00 4.63
391 430 5.823045 ACTTAGGAAATAGGAAATTGGCGAG 59.177 40.000 0.00 0.00 0.00 5.03
434 473 5.240891 CAGAGCAGGATCTGTTCTTACAAA 58.759 41.667 10.77 0.00 46.91 2.83
435 474 4.323028 CCAGAGCAGGATCTGTTCTTACAA 60.323 45.833 12.93 0.00 46.91 2.41
441 480 2.777832 AACCAGAGCAGGATCTGTTC 57.222 50.000 12.93 1.06 44.35 3.18
449 488 1.946768 TCAAAACGAAACCAGAGCAGG 59.053 47.619 0.00 0.00 0.00 4.85
824 863 9.737844 ATGGAAGTTTACATTGGCAAAATATTT 57.262 25.926 3.01 0.00 0.00 1.40
825 864 9.165035 CATGGAAGTTTACATTGGCAAAATATT 57.835 29.630 3.01 0.00 26.26 1.28
826 865 8.538701 TCATGGAAGTTTACATTGGCAAAATAT 58.461 29.630 3.01 0.00 26.26 1.28
827 866 7.901029 TCATGGAAGTTTACATTGGCAAAATA 58.099 30.769 3.01 0.00 26.26 1.40
828 867 6.767456 TCATGGAAGTTTACATTGGCAAAAT 58.233 32.000 3.01 0.00 26.26 1.82
829 868 6.166984 TCATGGAAGTTTACATTGGCAAAA 57.833 33.333 3.01 0.00 26.26 2.44
830 869 5.798125 TCATGGAAGTTTACATTGGCAAA 57.202 34.783 3.01 0.00 26.26 3.68
831 870 5.798125 TTCATGGAAGTTTACATTGGCAA 57.202 34.783 0.68 0.68 26.26 4.52
832 871 5.798125 TTTCATGGAAGTTTACATTGGCA 57.202 34.783 0.00 0.00 26.26 4.92
833 872 5.988561 TGTTTTCATGGAAGTTTACATTGGC 59.011 36.000 0.00 0.00 26.26 4.52
834 873 8.334632 GTTTGTTTTCATGGAAGTTTACATTGG 58.665 33.333 0.00 0.00 26.26 3.16
835 874 9.097257 AGTTTGTTTTCATGGAAGTTTACATTG 57.903 29.630 0.00 0.00 26.26 2.82
836 875 9.313118 GAGTTTGTTTTCATGGAAGTTTACATT 57.687 29.630 0.00 0.00 26.26 2.71
837 876 8.474025 TGAGTTTGTTTTCATGGAAGTTTACAT 58.526 29.630 0.00 0.00 29.87 2.29
838 877 7.757624 GTGAGTTTGTTTTCATGGAAGTTTACA 59.242 33.333 0.00 0.00 0.00 2.41
839 878 7.973944 AGTGAGTTTGTTTTCATGGAAGTTTAC 59.026 33.333 0.00 0.00 0.00 2.01
844 883 6.145535 GCTAGTGAGTTTGTTTTCATGGAAG 58.854 40.000 0.00 0.00 0.00 3.46
848 887 5.140177 GTCGCTAGTGAGTTTGTTTTCATG 58.860 41.667 6.15 0.00 0.00 3.07
894 935 2.423517 GCCTTTTATGGGCCTTAGAGCT 60.424 50.000 4.53 0.00 43.49 4.09
895 936 1.957177 GCCTTTTATGGGCCTTAGAGC 59.043 52.381 4.53 1.03 43.49 4.09
934 984 0.320247 GAGCCAGTGAGTGAGTGGTG 60.320 60.000 5.29 0.00 46.08 4.17
938 988 0.901124 GATGGAGCCAGTGAGTGAGT 59.099 55.000 0.00 0.00 0.00 3.41
945 995 2.620251 TATTTCCGATGGAGCCAGTG 57.380 50.000 0.00 0.00 31.21 3.66
946 996 2.975489 AGATATTTCCGATGGAGCCAGT 59.025 45.455 0.00 0.00 31.21 4.00
948 998 3.244561 GGAAGATATTTCCGATGGAGCCA 60.245 47.826 0.00 0.00 31.21 4.75
949 999 3.008485 AGGAAGATATTTCCGATGGAGCC 59.992 47.826 9.58 0.00 43.23 4.70
950 1000 4.249661 GAGGAAGATATTTCCGATGGAGC 58.750 47.826 9.58 0.00 43.23 4.70
1311 1417 1.289066 GAAAAGCGGGTCTTTGGCC 59.711 57.895 0.00 0.00 43.84 5.36
1445 1551 0.390860 CTTAGGGACGATGGCTCTGG 59.609 60.000 0.00 0.00 0.00 3.86
1522 1628 6.857029 TCGAGAGAAGCTTGGATTGATCCTT 61.857 44.000 2.10 0.00 42.14 3.36
1523 1629 5.419252 TCGAGAGAAGCTTGGATTGATCCT 61.419 45.833 2.10 0.00 42.14 3.24
1524 1630 3.181471 TCGAGAGAAGCTTGGATTGATCC 60.181 47.826 2.10 2.99 42.04 3.36
1536 1642 0.800300 CAAGGTCGCTCGAGAGAAGC 60.800 60.000 20.85 13.73 41.32 3.86
1575 1681 0.037303 ACTCCTGCAGGGACACAATG 59.963 55.000 32.23 13.88 39.58 2.82
1652 1758 1.152383 GATGCGCTCCGGGTTAGTTC 61.152 60.000 9.73 0.00 0.00 3.01
1741 1847 2.048127 GAGGAACGCGACAGCCTT 60.048 61.111 15.93 0.00 41.18 4.35
1802 1908 2.894765 TCAGTATCGGACCACTTGAACA 59.105 45.455 0.00 0.00 0.00 3.18
1862 1968 4.261994 GCCTAAGCATCTCTCTAGACTTGG 60.262 50.000 0.00 0.00 39.53 3.61
1943 2049 3.194542 GCTATAAGAGATCATGACCGGCT 59.805 47.826 0.00 0.00 0.00 5.52
2035 2141 2.494059 CACATTATAGAAGCCCCGGTG 58.506 52.381 0.00 0.00 0.00 4.94
2041 2147 3.717707 TCGTGAGCACATTATAGAAGCC 58.282 45.455 1.20 0.00 0.00 4.35
2072 2178 6.715464 CATATGTACTTGTCCACGAAATTCC 58.285 40.000 0.00 0.00 0.00 3.01
2074 2180 5.065988 GGCATATGTACTTGTCCACGAAATT 59.934 40.000 4.29 0.00 0.00 1.82
2243 2351 3.652057 ACTACCAGCTTTACCATGCAT 57.348 42.857 0.00 0.00 0.00 3.96
2252 2360 3.636764 CCAAAACAGGAACTACCAGCTTT 59.363 43.478 0.00 0.00 42.04 3.51
2275 2386 5.009610 TCAACATCTAGTTTGGCAAAGAACC 59.990 40.000 13.94 1.22 38.74 3.62
2664 3175 2.764572 GGAACGGAGGGAGTAATTCTCA 59.235 50.000 7.07 0.00 44.40 3.27
2665 3176 2.764572 TGGAACGGAGGGAGTAATTCTC 59.235 50.000 0.00 0.00 42.07 2.87
2666 3177 2.829023 TGGAACGGAGGGAGTAATTCT 58.171 47.619 0.00 0.00 0.00 2.40
2667 3178 3.622166 TTGGAACGGAGGGAGTAATTC 57.378 47.619 0.00 0.00 0.00 2.17
2668 3179 4.376225 TTTTGGAACGGAGGGAGTAATT 57.624 40.909 0.00 0.00 0.00 1.40
2669 3180 4.586306 ATTTTGGAACGGAGGGAGTAAT 57.414 40.909 0.00 0.00 0.00 1.89
2670 3181 4.778958 TCTATTTTGGAACGGAGGGAGTAA 59.221 41.667 0.00 0.00 0.00 2.24
2671 3182 4.355549 TCTATTTTGGAACGGAGGGAGTA 58.644 43.478 0.00 0.00 0.00 2.59
2672 3183 3.178865 TCTATTTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
2673 3184 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
2674 3185 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
2675 3186 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
2676 3187 3.877508 GGTCATCTATTTTGGAACGGAGG 59.122 47.826 0.00 0.00 0.00 4.30
2677 3188 3.877508 GGGTCATCTATTTTGGAACGGAG 59.122 47.826 0.00 0.00 0.00 4.63
2678 3189 3.264706 TGGGTCATCTATTTTGGAACGGA 59.735 43.478 0.00 0.00 0.00 4.69
2679 3190 3.616219 TGGGTCATCTATTTTGGAACGG 58.384 45.455 0.00 0.00 0.00 4.44
2680 3191 4.700213 AGTTGGGTCATCTATTTTGGAACG 59.300 41.667 0.00 0.00 0.00 3.95
2681 3192 6.590234 AAGTTGGGTCATCTATTTTGGAAC 57.410 37.500 0.00 0.00 0.00 3.62
2682 3193 8.893563 ATAAAGTTGGGTCATCTATTTTGGAA 57.106 30.769 0.00 0.00 0.00 3.53
2683 3194 9.403583 GTATAAAGTTGGGTCATCTATTTTGGA 57.596 33.333 0.00 0.00 0.00 3.53
2684 3195 9.408648 AGTATAAAGTTGGGTCATCTATTTTGG 57.591 33.333 0.00 0.00 0.00 3.28
2728 3239 9.823647 CCAAAATAGATGACTCAACTATGTACT 57.176 33.333 9.05 0.00 31.50 2.73
2729 3240 9.817809 TCCAAAATAGATGACTCAACTATGTAC 57.182 33.333 9.05 0.00 31.50 2.90
2731 3242 9.167311 GTTCCAAAATAGATGACTCAACTATGT 57.833 33.333 9.05 2.18 31.50 2.29
2732 3243 8.331022 CGTTCCAAAATAGATGACTCAACTATG 58.669 37.037 9.05 0.67 31.50 2.23
2733 3244 7.495934 CCGTTCCAAAATAGATGACTCAACTAT 59.504 37.037 3.54 3.54 32.22 2.12
2734 3245 6.816640 CCGTTCCAAAATAGATGACTCAACTA 59.183 38.462 0.00 0.00 0.00 2.24
2735 3246 5.643777 CCGTTCCAAAATAGATGACTCAACT 59.356 40.000 0.00 0.00 0.00 3.16
2736 3247 5.642063 TCCGTTCCAAAATAGATGACTCAAC 59.358 40.000 0.00 0.00 0.00 3.18
2737 3248 5.800296 TCCGTTCCAAAATAGATGACTCAA 58.200 37.500 0.00 0.00 0.00 3.02
2738 3249 5.414789 TCCGTTCCAAAATAGATGACTCA 57.585 39.130 0.00 0.00 0.00 3.41
2739 3250 4.811557 CCTCCGTTCCAAAATAGATGACTC 59.188 45.833 0.00 0.00 0.00 3.36
2740 3251 4.384208 CCCTCCGTTCCAAAATAGATGACT 60.384 45.833 0.00 0.00 0.00 3.41
2741 3252 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
2742 3253 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
2743 3254 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
2744 3255 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
2745 3256 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
2746 3257 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
2747 3258 4.098894 AGTACTCCCTCCGTTCCAAAATA 58.901 43.478 0.00 0.00 0.00 1.40
2748 3259 2.910977 AGTACTCCCTCCGTTCCAAAAT 59.089 45.455 0.00 0.00 0.00 1.82
2749 3260 2.301009 GAGTACTCCCTCCGTTCCAAAA 59.699 50.000 12.13 0.00 0.00 2.44
2750 3261 1.897802 GAGTACTCCCTCCGTTCCAAA 59.102 52.381 12.13 0.00 0.00 3.28
2751 3262 1.553706 GAGTACTCCCTCCGTTCCAA 58.446 55.000 12.13 0.00 0.00 3.53
2752 3263 0.679002 CGAGTACTCCCTCCGTTCCA 60.679 60.000 17.23 0.00 0.00 3.53
2753 3264 0.679321 ACGAGTACTCCCTCCGTTCC 60.679 60.000 17.23 0.00 0.00 3.62
2754 3265 0.731994 GACGAGTACTCCCTCCGTTC 59.268 60.000 17.23 3.24 0.00 3.95
2755 3266 0.037303 TGACGAGTACTCCCTCCGTT 59.963 55.000 17.23 0.00 0.00 4.44
2756 3267 0.037303 TTGACGAGTACTCCCTCCGT 59.963 55.000 17.23 11.58 0.00 4.69
2757 3268 1.171308 TTTGACGAGTACTCCCTCCG 58.829 55.000 17.23 8.27 0.00 4.63
2758 3269 3.889520 AATTTGACGAGTACTCCCTCC 57.110 47.619 17.23 4.67 0.00 4.30
2759 3270 6.210078 CAGATAATTTGACGAGTACTCCCTC 58.790 44.000 17.23 11.96 0.00 4.30
2760 3271 5.452077 GCAGATAATTTGACGAGTACTCCCT 60.452 44.000 17.23 2.26 0.00 4.20
2761 3272 4.745620 GCAGATAATTTGACGAGTACTCCC 59.254 45.833 17.23 9.78 0.00 4.30
2762 3273 5.593010 AGCAGATAATTTGACGAGTACTCC 58.407 41.667 17.23 4.79 0.00 3.85
2763 3274 7.640852 TCTAGCAGATAATTTGACGAGTACTC 58.359 38.462 13.18 13.18 0.00 2.59
2846 3358 5.710099 AGTAACGAAATCAACCAATGACCAT 59.290 36.000 0.00 0.00 41.93 3.55
2902 3415 6.978659 GCATGAATTGAACTGATGACATCAAT 59.021 34.615 18.49 6.58 42.61 2.57
2905 3418 5.067413 AGGCATGAATTGAACTGATGACATC 59.933 40.000 8.59 8.59 0.00 3.06
2913 3426 5.633830 ACTGTAAGGCATGAATTGAACTG 57.366 39.130 0.00 0.00 39.30 3.16
2936 3449 2.069273 GTTCTGCAGCTATGAACACGT 58.931 47.619 9.47 0.00 39.63 4.49
2937 3450 2.341257 AGTTCTGCAGCTATGAACACG 58.659 47.619 20.33 0.00 41.56 4.49
2958 3472 6.160459 ACAAACTATTGGATGGAACTCCCTAT 59.840 38.462 0.00 0.00 41.01 2.57
3040 3559 6.153680 ACAAGAAAAACAGGACCACATAAACA 59.846 34.615 0.00 0.00 0.00 2.83
3041 3560 6.569780 ACAAGAAAAACAGGACCACATAAAC 58.430 36.000 0.00 0.00 0.00 2.01
3069 3599 5.183140 GCAAAGGAGCCTAACAAAGAATACA 59.817 40.000 0.00 0.00 0.00 2.29
3071 3601 5.321102 TGCAAAGGAGCCTAACAAAGAATA 58.679 37.500 0.00 0.00 0.00 1.75
3108 3640 2.760092 AGCGGCAATATGACAACCAATT 59.240 40.909 1.45 0.00 0.00 2.32
3109 3641 2.099592 CAGCGGCAATATGACAACCAAT 59.900 45.455 1.45 0.00 0.00 3.16
3120 3652 2.419673 CAGATCACAAACAGCGGCAATA 59.580 45.455 1.45 0.00 0.00 1.90
3126 3658 2.738846 AGTTAGCAGATCACAAACAGCG 59.261 45.455 0.00 0.00 0.00 5.18
3142 3674 4.460382 AGCAACACCATGGAAATCAGTTAG 59.540 41.667 21.47 8.65 0.00 2.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.