Multiple sequence alignment - TraesCS6B01G040900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G040900 chr6B 100.000 4259 0 0 1 4259 25275704 25279962 0.000000e+00 7866.0
1 TraesCS6B01G040900 chr6B 89.645 338 31 3 127 460 709897307 709897644 1.090000e-115 427.0
2 TraesCS6B01G040900 chrUn 93.357 2514 130 18 1102 3599 71292498 71290006 0.000000e+00 3683.0
3 TraesCS6B01G040900 chrUn 93.304 224 14 1 845 1067 71292720 71292497 3.170000e-86 329.0
4 TraesCS6B01G040900 chrUn 80.312 320 33 8 3740 4042 71289786 71289480 9.280000e-52 215.0
5 TraesCS6B01G040900 chrUn 88.776 98 11 0 3627 3724 71290017 71289920 2.080000e-23 121.0
6 TraesCS6B01G040900 chr6D 95.663 1937 78 3 842 2777 13909329 13911260 0.000000e+00 3107.0
7 TraesCS6B01G040900 chr6D 91.408 838 51 13 2768 3599 13921060 13921882 0.000000e+00 1129.0
8 TraesCS6B01G040900 chr6D 88.973 526 31 8 3740 4259 13922061 13922565 3.620000e-175 625.0
9 TraesCS6B01G040900 chr6D 83.469 369 25 15 458 826 13908865 13909197 1.150000e-80 311.0
10 TraesCS6B01G040900 chr6D 88.750 240 21 6 3361 3599 28310114 28309880 5.390000e-74 289.0
11 TraesCS6B01G040900 chr6D 91.781 146 10 1 3456 3599 420225684 420225539 7.220000e-48 202.0
12 TraesCS6B01G040900 chr6D 88.119 101 11 1 3629 3729 13921873 13921972 7.480000e-23 119.0
13 TraesCS6B01G040900 chr6D 92.727 55 4 0 728 782 204788137 204788191 3.530000e-11 80.5
14 TraesCS6B01G040900 chr1B 79.787 2533 448 40 849 3360 669750561 669748072 0.000000e+00 1783.0
15 TraesCS6B01G040900 chr1D 79.569 2276 405 29 849 3112 481379761 481377534 0.000000e+00 1572.0
16 TraesCS6B01G040900 chr1D 89.645 338 27 5 129 460 304855266 304854931 1.420000e-114 424.0
17 TraesCS6B01G040900 chr1D 93.750 48 2 1 723 770 272662195 272662149 2.120000e-08 71.3
18 TraesCS6B01G040900 chr2D 75.163 1997 430 54 1259 3219 51159912 51157946 0.000000e+00 880.0
19 TraesCS6B01G040900 chr2D 74.192 2042 468 47 1205 3212 51163991 51161975 0.000000e+00 797.0
20 TraesCS6B01G040900 chr2D 73.652 2095 475 53 1170 3219 51253436 51255498 0.000000e+00 739.0
21 TraesCS6B01G040900 chr2D 91.798 317 22 3 131 443 118375501 118375817 5.060000e-119 438.0
22 TraesCS6B01G040900 chr2D 89.443 341 31 4 126 461 203757440 203757780 3.940000e-115 425.0
23 TraesCS6B01G040900 chr2D 74.242 990 213 29 2229 3204 51147825 51146864 1.120000e-100 377.0
24 TraesCS6B01G040900 chr2B 74.552 2008 429 56 1259 3219 79708842 79706870 0.000000e+00 802.0
25 TraesCS6B01G040900 chr2B 73.428 2036 493 41 1205 3212 79712790 79710775 0.000000e+00 719.0
26 TraesCS6B01G040900 chr2B 88.056 360 33 9 128 479 499494255 499493898 6.590000e-113 418.0
27 TraesCS6B01G040900 chr2B 75.553 814 161 23 2403 3204 79674006 79673219 2.420000e-97 366.0
28 TraesCS6B01G040900 chr2B 76.623 693 143 17 1251 1935 794031532 794030851 8.700000e-97 364.0
29 TraesCS6B01G040900 chr2A 74.351 2004 440 54 1259 3219 52572892 52570920 0.000000e+00 785.0
30 TraesCS6B01G040900 chr2A 73.894 2103 465 58 1166 3219 52756801 52758868 0.000000e+00 765.0
31 TraesCS6B01G040900 chr2A 73.662 1868 418 54 1379 3212 52575996 52574169 0.000000e+00 656.0
32 TraesCS6B01G040900 chr2A 75.870 833 159 26 2386 3204 52546642 52545838 1.860000e-103 387.0
33 TraesCS6B01G040900 chr2A 76.754 684 136 19 1259 1935 761278621 761279288 1.130000e-95 361.0
34 TraesCS6B01G040900 chr2A 76.829 328 60 14 2887 3204 52560254 52559933 2.040000e-38 171.0
35 TraesCS6B01G040900 chr7A 90.671 343 27 4 125 462 93531721 93531379 6.490000e-123 451.0
36 TraesCS6B01G040900 chr7A 74.795 976 218 20 1172 2135 80314068 80315027 8.520000e-112 414.0
37 TraesCS6B01G040900 chr7A 89.583 240 24 1 3361 3599 47294755 47294516 1.920000e-78 303.0
38 TraesCS6B01G040900 chr7A 93.750 48 2 1 723 770 97020696 97020742 2.120000e-08 71.3
39 TraesCS6B01G040900 chr5A 90.855 339 25 5 128 461 347915682 347915345 2.340000e-122 449.0
40 TraesCS6B01G040900 chr5A 90.756 238 20 1 3364 3599 611977345 611977108 2.470000e-82 316.0
41 TraesCS6B01G040900 chr5A 87.838 148 11 3 3740 3887 611976644 611976504 2.630000e-37 167.0
42 TraesCS6B01G040900 chr5A 93.750 48 2 1 723 770 561128534 561128580 2.120000e-08 71.3
43 TraesCS6B01G040900 chr3B 89.504 343 31 4 123 460 354466069 354466411 3.040000e-116 429.0
44 TraesCS6B01G040900 chr3B 74.533 911 208 18 1238 2135 703922396 703923295 4.020000e-100 375.0
45 TraesCS6B01G040900 chr4B 89.017 346 33 4 122 462 270627894 270628239 1.420000e-114 424.0
46 TraesCS6B01G040900 chr7D 74.665 971 228 14 1172 2135 76397105 76398064 8.520000e-112 414.0
47 TraesCS6B01G040900 chr7D 88.742 151 10 2 3740 3890 44715994 44715851 1.220000e-40 178.0
48 TraesCS6B01G040900 chr7D 95.349 43 1 1 723 765 484187995 484187954 2.750000e-07 67.6
49 TraesCS6B01G040900 chr5D 90.496 242 21 1 3360 3599 441569165 441568924 6.870000e-83 318.0
50 TraesCS6B01G040900 chr5D 88.843 242 25 1 3360 3599 490436937 490436696 3.220000e-76 296.0
51 TraesCS6B01G040900 chr5D 88.514 148 10 2 3740 3887 441568437 441568297 5.660000e-39 172.0
52 TraesCS6B01G040900 chr5B 90.041 241 22 1 3361 3599 604857878 604857638 1.150000e-80 311.0
53 TraesCS6B01G040900 chr6A 89.300 243 22 3 3361 3599 29577902 29578144 6.920000e-78 302.0
54 TraesCS6B01G040900 chr6A 91.667 48 3 1 723 770 595483243 595483289 9.880000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G040900 chr6B 25275704 25279962 4258 False 7866.000000 7866 100.00000 1 4259 1 chr6B.!!$F1 4258
1 TraesCS6B01G040900 chrUn 71289480 71292720 3240 True 1087.000000 3683 88.93725 845 4042 4 chrUn.!!$R1 3197
2 TraesCS6B01G040900 chr6D 13908865 13911260 2395 False 1709.000000 3107 89.56600 458 2777 2 chr6D.!!$F2 2319
3 TraesCS6B01G040900 chr6D 13921060 13922565 1505 False 624.333333 1129 89.50000 2768 4259 3 chr6D.!!$F3 1491
4 TraesCS6B01G040900 chr1B 669748072 669750561 2489 True 1783.000000 1783 79.78700 849 3360 1 chr1B.!!$R1 2511
5 TraesCS6B01G040900 chr1D 481377534 481379761 2227 True 1572.000000 1572 79.56900 849 3112 1 chr1D.!!$R3 2263
6 TraesCS6B01G040900 chr2D 51157946 51163991 6045 True 838.500000 880 74.67750 1205 3219 2 chr2D.!!$R2 2014
7 TraesCS6B01G040900 chr2D 51253436 51255498 2062 False 739.000000 739 73.65200 1170 3219 1 chr2D.!!$F1 2049
8 TraesCS6B01G040900 chr2D 51146864 51147825 961 True 377.000000 377 74.24200 2229 3204 1 chr2D.!!$R1 975
9 TraesCS6B01G040900 chr2B 79706870 79712790 5920 True 760.500000 802 73.99000 1205 3219 2 chr2B.!!$R4 2014
10 TraesCS6B01G040900 chr2B 79673219 79674006 787 True 366.000000 366 75.55300 2403 3204 1 chr2B.!!$R1 801
11 TraesCS6B01G040900 chr2B 794030851 794031532 681 True 364.000000 364 76.62300 1251 1935 1 chr2B.!!$R3 684
12 TraesCS6B01G040900 chr2A 52756801 52758868 2067 False 765.000000 765 73.89400 1166 3219 1 chr2A.!!$F1 2053
13 TraesCS6B01G040900 chr2A 52570920 52575996 5076 True 720.500000 785 74.00650 1259 3219 2 chr2A.!!$R3 1960
14 TraesCS6B01G040900 chr2A 52545838 52546642 804 True 387.000000 387 75.87000 2386 3204 1 chr2A.!!$R1 818
15 TraesCS6B01G040900 chr2A 761278621 761279288 667 False 361.000000 361 76.75400 1259 1935 1 chr2A.!!$F2 676
16 TraesCS6B01G040900 chr7A 80314068 80315027 959 False 414.000000 414 74.79500 1172 2135 1 chr7A.!!$F1 963
17 TraesCS6B01G040900 chr5A 611976504 611977345 841 True 241.500000 316 89.29700 3364 3887 2 chr5A.!!$R2 523
18 TraesCS6B01G040900 chr3B 703922396 703923295 899 False 375.000000 375 74.53300 1238 2135 1 chr3B.!!$F2 897
19 TraesCS6B01G040900 chr7D 76397105 76398064 959 False 414.000000 414 74.66500 1172 2135 1 chr7D.!!$F1 963
20 TraesCS6B01G040900 chr5D 441568297 441569165 868 True 245.000000 318 89.50500 3360 3887 2 chr5D.!!$R2 527

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
422 423 0.394488 TGCCTTGGTCACCGTTTCAA 60.394 50.000 0.00 0.0 0.00 2.69 F
1533 5853 0.317436 GTGAAAACATCGCAACGCCA 60.317 50.000 0.00 0.0 38.47 5.69 F
2775 7129 1.452651 CGCAGGGCATGTGAATCCT 60.453 57.895 6.92 0.0 42.31 3.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2399 6753 1.066257 CCAAGCAGTGTGTTGTGGC 59.934 57.895 6.61 0.0 0.00 5.01 R
2880 7234 2.072298 GCGCAAGTCAATCTCTTGTCT 58.928 47.619 0.30 0.0 42.67 3.41 R
3625 7999 0.110486 CCACTGCCCCTGTTAACTGT 59.890 55.000 7.22 0.0 0.00 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 7.315890 AGCACTAAACAAAATTAGCATCTTCC 58.684 34.615 0.00 0.00 36.54 3.46
31 32 6.531594 GCACTAAACAAAATTAGCATCTTCCC 59.468 38.462 0.00 0.00 36.54 3.97
32 33 7.035612 CACTAAACAAAATTAGCATCTTCCCC 58.964 38.462 0.00 0.00 36.54 4.81
33 34 6.954102 ACTAAACAAAATTAGCATCTTCCCCT 59.046 34.615 0.00 0.00 36.54 4.79
34 35 8.113462 ACTAAACAAAATTAGCATCTTCCCCTA 58.887 33.333 0.00 0.00 36.54 3.53
35 36 7.790782 AAACAAAATTAGCATCTTCCCCTAA 57.209 32.000 0.00 0.00 0.00 2.69
36 37 7.978099 AACAAAATTAGCATCTTCCCCTAAT 57.022 32.000 0.00 0.00 34.25 1.73
37 38 9.487442 AAACAAAATTAGCATCTTCCCCTAATA 57.513 29.630 0.00 0.00 32.93 0.98
38 39 9.487442 AACAAAATTAGCATCTTCCCCTAATAA 57.513 29.630 0.00 0.00 32.93 1.40
48 49 9.397280 GCATCTTCCCCTAATAAATAGTATTCC 57.603 37.037 0.00 0.00 0.00 3.01
81 82 6.094739 CGTCATCGTGTCAATCAATTAAGT 57.905 37.500 0.00 0.00 0.00 2.24
82 83 7.216920 CGTCATCGTGTCAATCAATTAAGTA 57.783 36.000 0.00 0.00 0.00 2.24
83 84 7.841486 CGTCATCGTGTCAATCAATTAAGTAT 58.159 34.615 0.00 0.00 0.00 2.12
119 120 8.306313 TCTTATCCAATAGTAGTGTGTGATGT 57.694 34.615 0.00 0.00 0.00 3.06
120 121 9.416284 TCTTATCCAATAGTAGTGTGTGATGTA 57.584 33.333 0.00 0.00 0.00 2.29
135 136 9.998106 GTGTGTGATGTAAATAATATACTCCCT 57.002 33.333 0.00 0.00 0.00 4.20
137 138 9.654663 GTGTGATGTAAATAATATACTCCCTCC 57.345 37.037 0.00 0.00 0.00 4.30
138 139 8.528643 TGTGATGTAAATAATATACTCCCTCCG 58.471 37.037 0.00 0.00 0.00 4.63
139 140 8.529476 GTGATGTAAATAATATACTCCCTCCGT 58.471 37.037 0.00 0.00 0.00 4.69
141 142 9.583765 GATGTAAATAATATACTCCCTCCGTTC 57.416 37.037 0.00 0.00 0.00 3.95
142 143 7.899973 TGTAAATAATATACTCCCTCCGTTCC 58.100 38.462 0.00 0.00 0.00 3.62
143 144 7.731688 TGTAAATAATATACTCCCTCCGTTCCT 59.268 37.037 0.00 0.00 0.00 3.36
144 145 7.628501 AAATAATATACTCCCTCCGTTCCTT 57.371 36.000 0.00 0.00 0.00 3.36
145 146 7.628501 AATAATATACTCCCTCCGTTCCTTT 57.371 36.000 0.00 0.00 0.00 3.11
147 148 8.912614 ATAATATACTCCCTCCGTTCCTTTAT 57.087 34.615 0.00 0.00 0.00 1.40
149 150 8.912614 AATATACTCCCTCCGTTCCTTTATAT 57.087 34.615 0.00 0.00 0.00 0.86
152 153 6.667558 ACTCCCTCCGTTCCTTTATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
153 154 5.543020 ACTCCCTCCGTTCCTTTATATAAGG 59.457 44.000 0.00 0.00 38.78 2.69
154 155 5.470501 TCCCTCCGTTCCTTTATATAAGGT 58.529 41.667 4.13 0.00 38.55 3.50
156 157 5.071384 CCCTCCGTTCCTTTATATAAGGTGT 59.929 44.000 4.13 0.00 38.55 4.16
157 158 6.268387 CCCTCCGTTCCTTTATATAAGGTGTA 59.732 42.308 4.13 0.00 38.55 2.90
158 159 7.038516 CCCTCCGTTCCTTTATATAAGGTGTAT 60.039 40.741 4.13 0.00 38.55 2.29
159 160 8.373220 CCTCCGTTCCTTTATATAAGGTGTATT 58.627 37.037 4.13 0.00 38.55 1.89
162 163 9.333724 CCGTTCCTTTATATAAGGTGTATTTGT 57.666 33.333 4.13 0.00 38.55 2.83
193 194 9.194972 TGATAAAATTCCATAATGTAAGGTGCA 57.805 29.630 0.00 0.00 0.00 4.57
198 199 7.902920 ATTCCATAATGTAAGGTGCATTTCT 57.097 32.000 0.00 0.00 37.65 2.52
199 200 7.716799 TTCCATAATGTAAGGTGCATTTCTT 57.283 32.000 0.00 0.00 37.65 2.52
200 201 7.333528 TCCATAATGTAAGGTGCATTTCTTC 57.666 36.000 0.00 0.00 37.65 2.87
201 202 7.118723 TCCATAATGTAAGGTGCATTTCTTCT 58.881 34.615 0.00 0.00 37.65 2.85
202 203 8.271458 TCCATAATGTAAGGTGCATTTCTTCTA 58.729 33.333 0.00 0.00 37.65 2.10
203 204 8.902806 CCATAATGTAAGGTGCATTTCTTCTAA 58.097 33.333 0.00 0.00 37.65 2.10
204 205 9.722056 CATAATGTAAGGTGCATTTCTTCTAAC 57.278 33.333 0.00 0.00 37.65 2.34
206 207 7.617041 ATGTAAGGTGCATTTCTTCTAACTC 57.383 36.000 0.00 0.00 0.00 3.01
208 209 3.956744 AGGTGCATTTCTTCTAACTCCC 58.043 45.455 0.00 0.00 0.00 4.30
209 210 3.017442 GGTGCATTTCTTCTAACTCCCC 58.983 50.000 0.00 0.00 0.00 4.81
210 211 3.017442 GTGCATTTCTTCTAACTCCCCC 58.983 50.000 0.00 0.00 0.00 5.40
211 212 2.919602 TGCATTTCTTCTAACTCCCCCT 59.080 45.455 0.00 0.00 0.00 4.79
212 213 4.080526 GTGCATTTCTTCTAACTCCCCCTA 60.081 45.833 0.00 0.00 0.00 3.53
213 214 4.538490 TGCATTTCTTCTAACTCCCCCTAA 59.462 41.667 0.00 0.00 0.00 2.69
214 215 5.193728 TGCATTTCTTCTAACTCCCCCTAAT 59.806 40.000 0.00 0.00 0.00 1.73
215 216 6.129874 GCATTTCTTCTAACTCCCCCTAATT 58.870 40.000 0.00 0.00 0.00 1.40
216 217 6.263392 GCATTTCTTCTAACTCCCCCTAATTC 59.737 42.308 0.00 0.00 0.00 2.17
217 218 5.970501 TTCTTCTAACTCCCCCTAATTCC 57.029 43.478 0.00 0.00 0.00 3.01
218 219 4.304659 TCTTCTAACTCCCCCTAATTCCC 58.695 47.826 0.00 0.00 0.00 3.97
220 221 4.379263 TCTAACTCCCCCTAATTCCCTT 57.621 45.455 0.00 0.00 0.00 3.95
221 222 4.717755 TCTAACTCCCCCTAATTCCCTTT 58.282 43.478 0.00 0.00 0.00 3.11
222 223 5.113125 TCTAACTCCCCCTAATTCCCTTTT 58.887 41.667 0.00 0.00 0.00 2.27
223 224 4.777877 AACTCCCCCTAATTCCCTTTTT 57.222 40.909 0.00 0.00 0.00 1.94
224 225 5.889286 AACTCCCCCTAATTCCCTTTTTA 57.111 39.130 0.00 0.00 0.00 1.52
225 226 5.467668 ACTCCCCCTAATTCCCTTTTTAG 57.532 43.478 0.00 0.00 0.00 1.85
228 229 3.305720 CCCCTAATTCCCTTTTTAGCCC 58.694 50.000 0.00 0.00 0.00 5.19
230 231 4.215908 CCCTAATTCCCTTTTTAGCCCTC 58.784 47.826 0.00 0.00 0.00 4.30
231 232 4.215908 CCTAATTCCCTTTTTAGCCCTCC 58.784 47.826 0.00 0.00 0.00 4.30
232 233 3.845109 AATTCCCTTTTTAGCCCTCCA 57.155 42.857 0.00 0.00 0.00 3.86
233 234 2.899303 TTCCCTTTTTAGCCCTCCAG 57.101 50.000 0.00 0.00 0.00 3.86
234 235 2.053747 TCCCTTTTTAGCCCTCCAGA 57.946 50.000 0.00 0.00 0.00 3.86
235 236 2.354328 TCCCTTTTTAGCCCTCCAGAA 58.646 47.619 0.00 0.00 0.00 3.02
236 237 2.719705 TCCCTTTTTAGCCCTCCAGAAA 59.280 45.455 0.00 0.00 0.00 2.52
237 238 3.141272 TCCCTTTTTAGCCCTCCAGAAAA 59.859 43.478 0.00 0.00 0.00 2.29
238 239 3.901222 CCCTTTTTAGCCCTCCAGAAAAA 59.099 43.478 0.00 0.00 31.76 1.94
263 264 6.289834 AGAAAGTATCTCTCCTGATTGCATG 58.710 40.000 0.00 0.00 30.46 4.06
266 267 3.510531 ATCTCTCCTGATTGCATGCAT 57.489 42.857 23.37 11.80 0.00 3.96
267 268 4.635699 ATCTCTCCTGATTGCATGCATA 57.364 40.909 23.37 12.94 0.00 3.14
268 269 4.635699 TCTCTCCTGATTGCATGCATAT 57.364 40.909 23.37 17.17 0.00 1.78
270 271 4.286291 TCTCTCCTGATTGCATGCATATCT 59.714 41.667 27.68 14.78 0.00 1.98
271 272 4.576879 TCTCCTGATTGCATGCATATCTC 58.423 43.478 27.68 20.34 0.00 2.75
274 275 4.079970 CCTGATTGCATGCATATCTCCTT 58.920 43.478 27.68 9.27 0.00 3.36
276 277 4.466827 TGATTGCATGCATATCTCCTTGT 58.533 39.130 27.68 8.14 0.00 3.16
278 279 5.704053 TGATTGCATGCATATCTCCTTGTAG 59.296 40.000 27.68 0.00 0.00 2.74
280 281 3.181452 TGCATGCATATCTCCTTGTAGCA 60.181 43.478 18.46 0.00 34.78 3.49
281 282 3.817084 GCATGCATATCTCCTTGTAGCAA 59.183 43.478 14.21 0.00 33.91 3.91
282 283 4.276678 GCATGCATATCTCCTTGTAGCAAA 59.723 41.667 14.21 0.00 33.91 3.68
283 284 5.221106 GCATGCATATCTCCTTGTAGCAAAA 60.221 40.000 14.21 0.00 33.91 2.44
284 285 6.436261 CATGCATATCTCCTTGTAGCAAAAG 58.564 40.000 0.00 0.00 33.91 2.27
285 286 5.744171 TGCATATCTCCTTGTAGCAAAAGA 58.256 37.500 0.00 0.00 0.00 2.52
287 288 6.317140 TGCATATCTCCTTGTAGCAAAAGAAG 59.683 38.462 0.00 0.00 0.00 2.85
288 289 6.238593 GCATATCTCCTTGTAGCAAAAGAAGG 60.239 42.308 0.00 0.00 40.44 3.46
291 292 5.690865 TCTCCTTGTAGCAAAAGAAGGAAA 58.309 37.500 11.72 0.00 45.39 3.13
292 293 6.126409 TCTCCTTGTAGCAAAAGAAGGAAAA 58.874 36.000 11.72 3.47 45.39 2.29
293 294 6.777580 TCTCCTTGTAGCAAAAGAAGGAAAAT 59.222 34.615 11.72 0.00 45.39 1.82
294 295 7.942341 TCTCCTTGTAGCAAAAGAAGGAAAATA 59.058 33.333 11.72 0.00 45.39 1.40
297 298 8.743714 CCTTGTAGCAAAAGAAGGAAAATATCT 58.256 33.333 4.26 0.00 41.35 1.98
298 299 9.780413 CTTGTAGCAAAAGAAGGAAAATATCTC 57.220 33.333 0.00 0.00 0.00 2.75
299 300 9.520515 TTGTAGCAAAAGAAGGAAAATATCTCT 57.479 29.630 0.00 0.00 0.00 3.10
327 328 7.707624 TTGATTGCATGTATCTTTCTTTCCT 57.292 32.000 10.13 0.00 0.00 3.36
329 330 4.970662 TGCATGTATCTTTCTTTCCTGC 57.029 40.909 0.00 0.00 0.00 4.85
331 332 4.156556 TGCATGTATCTTTCTTTCCTGCAC 59.843 41.667 0.00 0.00 32.65 4.57
333 334 5.448360 GCATGTATCTTTCTTTCCTGCACTC 60.448 44.000 0.00 0.00 0.00 3.51
334 335 5.227569 TGTATCTTTCTTTCCTGCACTCA 57.772 39.130 0.00 0.00 0.00 3.41
335 336 5.240891 TGTATCTTTCTTTCCTGCACTCAG 58.759 41.667 0.00 0.00 40.02 3.35
337 338 3.470709 TCTTTCTTTCCTGCACTCAGTG 58.529 45.455 0.00 0.00 38.66 3.66
338 339 3.134623 TCTTTCTTTCCTGCACTCAGTGA 59.865 43.478 9.70 0.00 38.66 3.41
339 340 3.777106 TTCTTTCCTGCACTCAGTGAT 57.223 42.857 9.70 0.00 38.66 3.06
340 341 3.777106 TCTTTCCTGCACTCAGTGATT 57.223 42.857 9.70 0.00 38.66 2.57
341 342 4.090761 TCTTTCCTGCACTCAGTGATTT 57.909 40.909 9.70 0.00 38.66 2.17
342 343 3.817084 TCTTTCCTGCACTCAGTGATTTG 59.183 43.478 9.70 0.00 38.66 2.32
343 344 1.527034 TCCTGCACTCAGTGATTTGC 58.473 50.000 9.70 16.48 38.66 3.68
344 345 1.072806 TCCTGCACTCAGTGATTTGCT 59.927 47.619 21.39 0.00 38.66 3.91
345 346 1.884579 CCTGCACTCAGTGATTTGCTT 59.115 47.619 21.39 0.00 38.66 3.91
346 347 2.351447 CCTGCACTCAGTGATTTGCTTG 60.351 50.000 21.39 15.56 38.66 4.01
347 348 1.001048 TGCACTCAGTGATTTGCTTGC 60.001 47.619 21.39 11.87 35.23 4.01
350 351 1.610522 ACTCAGTGATTTGCTTGCCAC 59.389 47.619 0.00 0.00 0.00 5.01
351 352 1.884579 CTCAGTGATTTGCTTGCCACT 59.115 47.619 0.00 0.00 40.15 4.00
352 353 3.076621 CTCAGTGATTTGCTTGCCACTA 58.923 45.455 0.00 0.00 37.74 2.74
353 354 3.485394 TCAGTGATTTGCTTGCCACTAA 58.515 40.909 0.00 0.00 37.74 2.24
355 356 2.558359 AGTGATTTGCTTGCCACTAACC 59.442 45.455 0.00 0.00 38.02 2.85
356 357 2.295909 GTGATTTGCTTGCCACTAACCA 59.704 45.455 0.00 0.00 0.00 3.67
357 358 2.961741 TGATTTGCTTGCCACTAACCAA 59.038 40.909 0.00 0.00 0.00 3.67
358 359 2.880963 TTTGCTTGCCACTAACCAAC 57.119 45.000 0.00 0.00 0.00 3.77
360 361 1.993956 TGCTTGCCACTAACCAACAT 58.006 45.000 0.00 0.00 0.00 2.71
362 363 3.696045 TGCTTGCCACTAACCAACATAT 58.304 40.909 0.00 0.00 0.00 1.78
363 364 4.085733 TGCTTGCCACTAACCAACATATT 58.914 39.130 0.00 0.00 0.00 1.28
364 365 4.526262 TGCTTGCCACTAACCAACATATTT 59.474 37.500 0.00 0.00 0.00 1.40
365 366 5.712446 TGCTTGCCACTAACCAACATATTTA 59.288 36.000 0.00 0.00 0.00 1.40
366 367 6.379703 TGCTTGCCACTAACCAACATATTTAT 59.620 34.615 0.00 0.00 0.00 1.40
367 368 6.918022 GCTTGCCACTAACCAACATATTTATC 59.082 38.462 0.00 0.00 0.00 1.75
368 369 7.416213 GCTTGCCACTAACCAACATATTTATCA 60.416 37.037 0.00 0.00 0.00 2.15
369 370 7.946381 TGCCACTAACCAACATATTTATCAA 57.054 32.000 0.00 0.00 0.00 2.57
370 371 7.995289 TGCCACTAACCAACATATTTATCAAG 58.005 34.615 0.00 0.00 0.00 3.02
371 372 7.068103 TGCCACTAACCAACATATTTATCAAGG 59.932 37.037 0.00 0.00 0.00 3.61
372 373 7.470009 GCCACTAACCAACATATTTATCAAGGG 60.470 40.741 0.00 0.00 0.00 3.95
373 374 7.559897 CCACTAACCAACATATTTATCAAGGGT 59.440 37.037 0.00 0.00 0.00 4.34
374 375 9.621629 CACTAACCAACATATTTATCAAGGGTA 57.378 33.333 0.00 0.00 0.00 3.69
388 389 9.589461 TTTATCAAGGGTAATTTTGTCCTAACA 57.411 29.630 0.00 0.00 0.00 2.41
389 390 6.887626 TCAAGGGTAATTTTGTCCTAACAC 57.112 37.500 0.00 0.00 34.35 3.32
390 391 5.771165 TCAAGGGTAATTTTGTCCTAACACC 59.229 40.000 0.00 0.00 34.35 4.16
394 395 6.502863 AGGGTAATTTTGTCCTAACACCTCTA 59.497 38.462 0.00 0.00 34.35 2.43
395 396 7.184022 AGGGTAATTTTGTCCTAACACCTCTAT 59.816 37.037 0.00 0.00 34.35 1.98
396 397 8.488668 GGGTAATTTTGTCCTAACACCTCTATA 58.511 37.037 0.00 0.00 34.35 1.31
405 406 8.148351 TGTCCTAACACCTCTATATTTATGTGC 58.852 37.037 0.00 0.00 0.00 4.57
406 407 7.603024 GTCCTAACACCTCTATATTTATGTGCC 59.397 40.741 0.00 0.00 0.00 5.01
407 408 7.512746 TCCTAACACCTCTATATTTATGTGCCT 59.487 37.037 0.00 0.00 0.00 4.75
408 409 8.157476 CCTAACACCTCTATATTTATGTGCCTT 58.843 37.037 0.00 0.00 0.00 4.35
409 410 7.807977 AACACCTCTATATTTATGTGCCTTG 57.192 36.000 0.00 0.00 0.00 3.61
410 411 6.299141 ACACCTCTATATTTATGTGCCTTGG 58.701 40.000 0.00 0.00 0.00 3.61
411 412 6.126478 ACACCTCTATATTTATGTGCCTTGGT 60.126 38.462 0.00 0.00 0.00 3.67
412 413 6.428159 CACCTCTATATTTATGTGCCTTGGTC 59.572 42.308 0.00 0.00 0.00 4.02
415 416 6.296026 TCTATATTTATGTGCCTTGGTCACC 58.704 40.000 10.19 0.00 33.71 4.02
416 417 1.529226 TTTATGTGCCTTGGTCACCG 58.471 50.000 10.19 0.00 33.71 4.94
417 418 0.398696 TTATGTGCCTTGGTCACCGT 59.601 50.000 10.19 4.32 33.71 4.83
418 419 0.398696 TATGTGCCTTGGTCACCGTT 59.601 50.000 10.19 1.77 33.71 4.44
419 420 0.467290 ATGTGCCTTGGTCACCGTTT 60.467 50.000 10.19 0.00 33.71 3.60
422 423 0.394488 TGCCTTGGTCACCGTTTCAA 60.394 50.000 0.00 0.00 0.00 2.69
423 424 0.741915 GCCTTGGTCACCGTTTCAAA 59.258 50.000 0.00 0.00 0.00 2.69
426 427 3.739830 GCCTTGGTCACCGTTTCAAAAAT 60.740 43.478 0.00 0.00 0.00 1.82
427 428 4.500035 GCCTTGGTCACCGTTTCAAAAATA 60.500 41.667 0.00 0.00 0.00 1.40
430 431 7.371936 CCTTGGTCACCGTTTCAAAAATAATA 58.628 34.615 0.00 0.00 0.00 0.98
431 432 7.327518 CCTTGGTCACCGTTTCAAAAATAATAC 59.672 37.037 0.00 0.00 0.00 1.89
432 433 7.273320 TGGTCACCGTTTCAAAAATAATACA 57.727 32.000 0.00 0.00 0.00 2.29
433 434 7.140048 TGGTCACCGTTTCAAAAATAATACAC 58.860 34.615 0.00 0.00 0.00 2.90
434 435 6.583427 GGTCACCGTTTCAAAAATAATACACC 59.417 38.462 0.00 0.00 0.00 4.16
435 436 7.364970 GTCACCGTTTCAAAAATAATACACCT 58.635 34.615 0.00 0.00 0.00 4.00
436 437 7.863877 GTCACCGTTTCAAAAATAATACACCTT 59.136 33.333 0.00 0.00 0.00 3.50
439 440 8.848182 ACCGTTTCAAAAATAATACACCTTACA 58.152 29.630 0.00 0.00 0.00 2.41
455 456 4.748277 CTTACATAAAGGAACGGAGGGA 57.252 45.455 0.00 0.00 0.00 4.20
456 457 4.694339 CTTACATAAAGGAACGGAGGGAG 58.306 47.826 0.00 0.00 0.00 4.30
469 470 6.402456 AACGGAGGGAGTATTGTCTAATAC 57.598 41.667 0.00 0.00 45.81 1.89
517 518 9.856488 CTATACTAAATTGCATCGTACCTACAT 57.144 33.333 0.00 0.00 0.00 2.29
638 639 2.744202 GTTGATCCAATGACGAGCACTT 59.256 45.455 0.00 0.00 0.00 3.16
754 755 6.854496 TCAACGTGCAATTAATATCCTACC 57.146 37.500 0.00 0.00 0.00 3.18
773 774 8.270137 TCCTACCTAATATCAACCTGCAATTA 57.730 34.615 0.00 0.00 0.00 1.40
820 821 8.616942 TGCAATGCACATAACGTAATTACTAAT 58.383 29.630 2.72 1.91 31.71 1.73
957 1084 2.119484 TAAGAACACCGGGTGCTGGG 62.119 60.000 26.62 3.30 34.74 4.45
1003 1130 4.342951 CCCCGTCTAGGTGTTGTATAATGA 59.657 45.833 0.00 0.00 38.74 2.57
1067 1194 2.544685 CTTCTCTCTTGCACCCATACG 58.455 52.381 0.00 0.00 0.00 3.06
1091 1222 4.948847 TGCTATGTTAATCGAGCAGATGT 58.051 39.130 4.55 0.00 39.93 3.06
1092 1223 6.084326 TGCTATGTTAATCGAGCAGATGTA 57.916 37.500 4.55 0.00 39.93 2.29
1113 1244 0.891904 GGGTACAACACGGTGCCAAT 60.892 55.000 8.30 0.00 44.37 3.16
1181 1312 2.363795 TCCCTCGCCCTCGAATGT 60.364 61.111 0.00 0.00 44.98 2.71
1185 1316 1.084370 CCTCGCCCTCGAATGTTGAC 61.084 60.000 0.00 0.00 44.98 3.18
1404 5724 2.752903 GACCACACACACTCCAAAGTTT 59.247 45.455 0.00 0.00 31.71 2.66
1419 5739 2.575805 AGTTTCTTGGGCTCAGGAAG 57.424 50.000 11.34 0.00 39.58 3.46
1518 5838 2.226330 CACCCTTCGTTTGATGGTGAA 58.774 47.619 0.73 0.00 44.32 3.18
1528 5848 3.998099 TTGATGGTGAAAACATCGCAA 57.002 38.095 1.14 0.00 45.90 4.85
1533 5853 0.317436 GTGAAAACATCGCAACGCCA 60.317 50.000 0.00 0.00 38.47 5.69
1627 5953 3.068732 CGAAGAAGATGATGACCCTAGCA 59.931 47.826 0.00 0.00 0.00 3.49
1798 6137 4.415881 TGTAATGATTCCGCCATAGTGT 57.584 40.909 0.00 0.00 0.00 3.55
2355 6703 4.925861 GGCGCCATCCTCAGAGCC 62.926 72.222 24.80 0.00 37.61 4.70
2399 6753 1.501741 CGGGTGCCATTTTCTCGTG 59.498 57.895 0.00 0.00 0.00 4.35
2775 7129 1.452651 CGCAGGGCATGTGAATCCT 60.453 57.895 6.92 0.00 42.31 3.24
2880 7234 2.192861 CCTGGCAACCTTCGTGCAA 61.193 57.895 0.00 0.00 44.07 4.08
3112 7466 0.601558 TGGGGAGAAGAAGACGTTCG 59.398 55.000 0.00 0.00 37.79 3.95
3245 7602 4.951963 CGAATCTCCGCCGCCTCC 62.952 72.222 0.00 0.00 0.00 4.30
3246 7603 4.610714 GAATCTCCGCCGCCTCCC 62.611 72.222 0.00 0.00 0.00 4.30
3253 7610 3.602677 CGCCGCCTCCCGAGAATA 61.603 66.667 0.00 0.00 40.02 1.75
3301 7662 8.031277 GGCTAGAAGTGAATGATTGAAATGTTT 58.969 33.333 0.00 0.00 0.00 2.83
3371 7736 7.068716 TCGATCAACTTTCTGAGATATTGGAGA 59.931 37.037 0.00 0.00 0.00 3.71
3378 7743 6.647334 TTCTGAGATATTGGAGAGCTACTG 57.353 41.667 0.00 0.00 0.00 2.74
3385 7750 6.782000 AGATATTGGAGAGCTACTGTCAGATT 59.218 38.462 6.91 0.00 0.00 2.40
3426 7791 7.041984 CGTATAGTATGAGCTATTCCTATCGCA 60.042 40.741 0.00 0.00 34.00 5.10
3471 7836 2.195922 CTGGTGAACAAAAGCACAAGC 58.804 47.619 0.00 0.00 42.56 4.01
3509 7874 3.002759 GCTAAGAAAGCCGGTTCATCATC 59.997 47.826 1.90 0.00 46.25 2.92
3563 7937 8.964420 TTGTCAAGTGTCAAGTTCTTTTAAAG 57.036 30.769 0.00 0.00 0.00 1.85
3586 7960 2.874701 CTGAACCCTCAAGTGTCAAGTG 59.125 50.000 0.00 0.00 0.00 3.16
3587 7961 1.604278 GAACCCTCAAGTGTCAAGTGC 59.396 52.381 0.00 0.00 0.00 4.40
3588 7962 0.546122 ACCCTCAAGTGTCAAGTGCA 59.454 50.000 0.00 0.00 0.00 4.57
3589 7963 1.233019 CCCTCAAGTGTCAAGTGCAG 58.767 55.000 0.00 0.00 0.00 4.41
3590 7964 1.475751 CCCTCAAGTGTCAAGTGCAGT 60.476 52.381 0.00 0.00 0.00 4.40
3591 7965 2.292267 CCTCAAGTGTCAAGTGCAGTT 58.708 47.619 0.00 0.00 0.00 3.16
3592 7966 3.466836 CCTCAAGTGTCAAGTGCAGTTA 58.533 45.455 6.43 0.00 0.00 2.24
3593 7967 3.876914 CCTCAAGTGTCAAGTGCAGTTAA 59.123 43.478 6.43 0.00 0.00 2.01
3594 7968 4.260784 CCTCAAGTGTCAAGTGCAGTTAAC 60.261 45.833 6.43 3.11 0.00 2.01
3595 7969 4.257731 TCAAGTGTCAAGTGCAGTTAACA 58.742 39.130 6.13 6.13 0.00 2.41
3596 7970 4.332543 TCAAGTGTCAAGTGCAGTTAACAG 59.667 41.667 10.66 0.01 0.00 3.16
3597 7971 3.206150 AGTGTCAAGTGCAGTTAACAGG 58.794 45.455 10.66 0.00 0.00 4.00
3598 7972 2.290641 GTGTCAAGTGCAGTTAACAGGG 59.709 50.000 10.66 0.00 0.00 4.45
3599 7973 1.266989 GTCAAGTGCAGTTAACAGGGC 59.733 52.381 6.43 8.98 0.00 5.19
3600 7974 1.133945 TCAAGTGCAGTTAACAGGGCA 60.134 47.619 6.43 11.49 0.00 5.36
3601 7975 1.888512 CAAGTGCAGTTAACAGGGCAT 59.111 47.619 18.38 5.44 38.68 4.40
3602 7976 2.292828 AGTGCAGTTAACAGGGCATT 57.707 45.000 18.38 13.43 38.68 3.56
3603 7977 2.162681 AGTGCAGTTAACAGGGCATTC 58.837 47.619 18.38 9.79 38.68 2.67
3604 7978 1.135689 GTGCAGTTAACAGGGCATTCG 60.136 52.381 18.38 0.00 38.68 3.34
3605 7979 0.179163 GCAGTTAACAGGGCATTCGC 60.179 55.000 8.61 0.00 37.44 4.70
3606 7980 1.164411 CAGTTAACAGGGCATTCGCA 58.836 50.000 8.61 0.00 41.24 5.10
3607 7981 1.135689 CAGTTAACAGGGCATTCGCAC 60.136 52.381 8.61 0.00 44.31 5.34
3662 8039 4.081420 CAGTGGAGTAACTGTAGCTGGATT 60.081 45.833 0.00 0.00 42.21 3.01
3663 8040 4.160626 AGTGGAGTAACTGTAGCTGGATTC 59.839 45.833 0.00 0.00 0.00 2.52
3665 8042 4.402793 TGGAGTAACTGTAGCTGGATTCTC 59.597 45.833 0.00 0.00 0.00 2.87
3749 8557 6.433847 TCTTGAATTTAGTCCCAAGTCTCA 57.566 37.500 0.00 0.00 37.74 3.27
3804 8612 2.622977 GGTTTGCCTCCCACCAATATGA 60.623 50.000 0.00 0.00 0.00 2.15
3805 8613 3.096092 GTTTGCCTCCCACCAATATGAA 58.904 45.455 0.00 0.00 0.00 2.57
3806 8614 3.686227 TTGCCTCCCACCAATATGAAT 57.314 42.857 0.00 0.00 0.00 2.57
3807 8615 4.805140 TTGCCTCCCACCAATATGAATA 57.195 40.909 0.00 0.00 0.00 1.75
3808 8616 5.337956 TTGCCTCCCACCAATATGAATAT 57.662 39.130 0.00 0.00 0.00 1.28
3809 8617 4.665451 TGCCTCCCACCAATATGAATATG 58.335 43.478 0.00 0.00 0.00 1.78
3832 8659 4.683400 GCTCCTTGCATAAGCTAGTAACCA 60.683 45.833 7.92 0.00 41.21 3.67
3852 8682 5.934781 ACCACTGGCCATTTTTCATTTTTA 58.065 33.333 5.51 0.00 0.00 1.52
3887 8717 3.760151 TCATGCCTGATGACTTCTTTTGG 59.240 43.478 0.00 0.00 36.06 3.28
3888 8718 2.517959 TGCCTGATGACTTCTTTTGGG 58.482 47.619 0.00 0.00 0.00 4.12
3889 8719 1.821136 GCCTGATGACTTCTTTTGGGG 59.179 52.381 0.00 0.00 0.00 4.96
3890 8720 2.450476 CCTGATGACTTCTTTTGGGGG 58.550 52.381 0.00 0.00 0.00 5.40
3891 8721 2.041620 CCTGATGACTTCTTTTGGGGGA 59.958 50.000 0.00 0.00 0.00 4.81
3892 8722 3.309410 CCTGATGACTTCTTTTGGGGGAT 60.309 47.826 0.00 0.00 0.00 3.85
3893 8723 4.347607 CTGATGACTTCTTTTGGGGGATT 58.652 43.478 0.00 0.00 0.00 3.01
3894 8724 4.750941 TGATGACTTCTTTTGGGGGATTT 58.249 39.130 0.00 0.00 0.00 2.17
3895 8725 4.527816 TGATGACTTCTTTTGGGGGATTTG 59.472 41.667 0.00 0.00 0.00 2.32
3896 8726 3.238597 TGACTTCTTTTGGGGGATTTGG 58.761 45.455 0.00 0.00 0.00 3.28
3897 8727 3.116939 TGACTTCTTTTGGGGGATTTGGA 60.117 43.478 0.00 0.00 0.00 3.53
3898 8728 3.239449 ACTTCTTTTGGGGGATTTGGAC 58.761 45.455 0.00 0.00 0.00 4.02
3899 8729 1.917872 TCTTTTGGGGGATTTGGACG 58.082 50.000 0.00 0.00 0.00 4.79
3900 8730 0.246360 CTTTTGGGGGATTTGGACGC 59.754 55.000 0.00 0.00 0.00 5.19
3974 8805 3.077556 GAGGAAGAGGGAGCGGCA 61.078 66.667 1.45 0.00 0.00 5.69
3979 8810 1.372087 GAAGAGGGAGCGGCATTGTG 61.372 60.000 1.45 0.00 0.00 3.33
3988 8819 2.482374 GGCATTGTGTCTGCGCTC 59.518 61.111 9.73 0.00 40.59 5.03
4009 8840 2.579201 CGGTCCCTCGCTGTCAAT 59.421 61.111 0.00 0.00 0.00 2.57
4014 8845 1.198094 TCCCTCGCTGTCAATTGGGA 61.198 55.000 5.42 0.00 40.99 4.37
4018 8849 1.671054 CGCTGTCAATTGGGACCGT 60.671 57.895 5.42 0.00 36.97 4.83
4020 8851 0.605319 GCTGTCAATTGGGACCGTCA 60.605 55.000 5.42 0.00 36.97 4.35
4023 8857 0.605319 GTCAATTGGGACCGTCAGCA 60.605 55.000 5.42 0.00 0.00 4.41
4104 8940 2.436646 CGTGACCCACATCCTGCC 60.437 66.667 0.00 0.00 33.40 4.85
4185 9021 2.501723 GCTCTACCTCATTGGGTTCTCA 59.498 50.000 2.70 0.00 40.48 3.27
4186 9022 3.135530 GCTCTACCTCATTGGGTTCTCAT 59.864 47.826 2.70 0.00 40.48 2.90
4202 9038 3.033909 TCTCATTGGACCGTGAGATCAT 58.966 45.455 19.91 0.00 44.24 2.45
4223 9059 1.219393 GGAGCTACCTCAGGCACAC 59.781 63.158 0.00 0.00 39.96 3.82
4224 9060 1.219393 GAGCTACCTCAGGCACACC 59.781 63.158 0.00 0.00 38.03 4.16
4225 9061 2.245438 GAGCTACCTCAGGCACACCC 62.245 65.000 0.00 0.00 38.03 4.61
4226 9062 2.579201 CTACCTCAGGCACACCCG 59.421 66.667 0.00 0.00 39.21 5.28
4249 9085 1.935933 CCAGTTGTATACGGGAGTGC 58.064 55.000 0.00 0.00 44.02 4.40
4253 9089 2.167900 AGTTGTATACGGGAGTGCCTTC 59.832 50.000 0.00 0.00 46.80 3.46
4258 9094 2.943036 TACGGGAGTGCCTTCTTTTT 57.057 45.000 0.00 0.00 46.80 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 7.315890 GGAAGATGCTAATTTTGTTTAGTGCT 58.684 34.615 0.00 0.00 32.77 4.40
6 7 6.531594 GGGAAGATGCTAATTTTGTTTAGTGC 59.468 38.462 0.00 0.00 32.77 4.40
8 9 6.954102 AGGGGAAGATGCTAATTTTGTTTAGT 59.046 34.615 0.00 0.00 32.77 2.24
9 10 7.410120 AGGGGAAGATGCTAATTTTGTTTAG 57.590 36.000 0.00 0.00 33.24 1.85
10 11 8.887264 TTAGGGGAAGATGCTAATTTTGTTTA 57.113 30.769 0.00 0.00 0.00 2.01
11 12 7.790782 TTAGGGGAAGATGCTAATTTTGTTT 57.209 32.000 0.00 0.00 0.00 2.83
12 13 7.978099 ATTAGGGGAAGATGCTAATTTTGTT 57.022 32.000 0.00 0.00 0.00 2.83
22 23 9.397280 GGAATACTATTTATTAGGGGAAGATGC 57.603 37.037 0.00 0.00 31.68 3.91
58 59 6.094739 ACTTAATTGATTGACACGATGACG 57.905 37.500 0.00 0.00 45.75 4.35
109 110 9.998106 AGGGAGTATATTATTTACATCACACAC 57.002 33.333 0.00 0.00 0.00 3.82
111 112 9.654663 GGAGGGAGTATATTATTTACATCACAC 57.345 37.037 0.00 0.00 0.00 3.82
112 113 8.528643 CGGAGGGAGTATATTATTTACATCACA 58.471 37.037 0.00 0.00 0.00 3.58
113 114 8.529476 ACGGAGGGAGTATATTATTTACATCAC 58.471 37.037 0.00 0.00 0.00 3.06
114 115 8.660295 ACGGAGGGAGTATATTATTTACATCA 57.340 34.615 0.00 0.00 0.00 3.07
115 116 9.583765 GAACGGAGGGAGTATATTATTTACATC 57.416 37.037 0.00 0.00 0.00 3.06
117 118 7.731688 AGGAACGGAGGGAGTATATTATTTACA 59.268 37.037 0.00 0.00 0.00 2.41
118 119 8.131847 AGGAACGGAGGGAGTATATTATTTAC 57.868 38.462 0.00 0.00 0.00 2.01
119 120 8.731591 AAGGAACGGAGGGAGTATATTATTTA 57.268 34.615 0.00 0.00 0.00 1.40
120 121 7.628501 AAGGAACGGAGGGAGTATATTATTT 57.371 36.000 0.00 0.00 0.00 1.40
122 123 8.912614 ATAAAGGAACGGAGGGAGTATATTAT 57.087 34.615 0.00 0.00 0.00 1.28
124 125 8.912614 ATATAAAGGAACGGAGGGAGTATATT 57.087 34.615 0.00 0.00 0.00 1.28
127 128 7.399478 CCTTATATAAAGGAACGGAGGGAGTAT 59.601 40.741 0.00 0.00 39.81 2.12
128 129 6.723052 CCTTATATAAAGGAACGGAGGGAGTA 59.277 42.308 0.00 0.00 39.81 2.59
129 130 5.543020 CCTTATATAAAGGAACGGAGGGAGT 59.457 44.000 0.00 0.00 39.81 3.85
130 131 5.543020 ACCTTATATAAAGGAACGGAGGGAG 59.457 44.000 10.67 0.00 39.81 4.30
131 132 5.306160 CACCTTATATAAAGGAACGGAGGGA 59.694 44.000 10.67 0.00 39.81 4.20
132 133 5.071384 ACACCTTATATAAAGGAACGGAGGG 59.929 44.000 10.67 4.11 39.81 4.30
133 134 6.170846 ACACCTTATATAAAGGAACGGAGG 57.829 41.667 10.67 4.52 39.81 4.30
135 136 9.550406 CAAATACACCTTATATAAAGGAACGGA 57.450 33.333 10.67 0.00 39.81 4.69
136 137 9.333724 ACAAATACACCTTATATAAAGGAACGG 57.666 33.333 10.67 6.38 39.81 4.44
167 168 9.194972 TGCACCTTACATTATGGAATTTTATCA 57.805 29.630 0.00 0.00 0.00 2.15
171 172 9.382275 GAAATGCACCTTACATTATGGAATTTT 57.618 29.630 0.00 0.00 36.74 1.82
173 174 8.310122 AGAAATGCACCTTACATTATGGAATT 57.690 30.769 0.00 0.00 36.74 2.17
174 175 7.902920 AGAAATGCACCTTACATTATGGAAT 57.097 32.000 0.00 0.00 36.74 3.01
176 177 7.118723 AGAAGAAATGCACCTTACATTATGGA 58.881 34.615 0.00 0.00 36.74 3.41
178 179 9.722056 GTTAGAAGAAATGCACCTTACATTATG 57.278 33.333 0.00 0.00 36.74 1.90
180 181 9.162764 GAGTTAGAAGAAATGCACCTTACATTA 57.837 33.333 0.00 0.00 36.74 1.90
183 184 5.938125 GGAGTTAGAAGAAATGCACCTTACA 59.062 40.000 0.00 0.00 0.00 2.41
184 185 5.354513 GGGAGTTAGAAGAAATGCACCTTAC 59.645 44.000 0.00 0.00 0.00 2.34
185 186 5.497474 GGGAGTTAGAAGAAATGCACCTTA 58.503 41.667 0.00 0.00 0.00 2.69
186 187 4.336280 GGGAGTTAGAAGAAATGCACCTT 58.664 43.478 0.00 0.00 0.00 3.50
187 188 3.308473 GGGGAGTTAGAAGAAATGCACCT 60.308 47.826 0.00 0.00 0.00 4.00
188 189 3.017442 GGGGAGTTAGAAGAAATGCACC 58.983 50.000 0.00 0.00 0.00 5.01
189 190 3.017442 GGGGGAGTTAGAAGAAATGCAC 58.983 50.000 0.00 0.00 0.00 4.57
190 191 2.919602 AGGGGGAGTTAGAAGAAATGCA 59.080 45.455 0.00 0.00 0.00 3.96
191 192 3.653835 AGGGGGAGTTAGAAGAAATGC 57.346 47.619 0.00 0.00 0.00 3.56
193 194 6.126156 GGGAATTAGGGGGAGTTAGAAGAAAT 60.126 42.308 0.00 0.00 0.00 2.17
194 195 5.193124 GGGAATTAGGGGGAGTTAGAAGAAA 59.807 44.000 0.00 0.00 0.00 2.52
196 197 4.014593 AGGGAATTAGGGGGAGTTAGAAGA 60.015 45.833 0.00 0.00 0.00 2.87
198 199 4.379263 AGGGAATTAGGGGGAGTTAGAA 57.621 45.455 0.00 0.00 0.00 2.10
199 200 4.379263 AAGGGAATTAGGGGGAGTTAGA 57.621 45.455 0.00 0.00 0.00 2.10
200 201 5.467668 AAAAGGGAATTAGGGGGAGTTAG 57.532 43.478 0.00 0.00 0.00 2.34
201 202 5.889286 AAAAAGGGAATTAGGGGGAGTTA 57.111 39.130 0.00 0.00 0.00 2.24
202 203 4.777877 AAAAAGGGAATTAGGGGGAGTT 57.222 40.909 0.00 0.00 0.00 3.01
203 204 4.325895 GCTAAAAAGGGAATTAGGGGGAGT 60.326 45.833 0.00 0.00 31.28 3.85
204 205 4.215908 GCTAAAAAGGGAATTAGGGGGAG 58.784 47.826 0.00 0.00 31.28 4.30
206 207 3.305720 GGCTAAAAAGGGAATTAGGGGG 58.694 50.000 0.00 0.00 31.28 5.40
208 209 4.215908 GAGGGCTAAAAAGGGAATTAGGG 58.784 47.826 0.00 0.00 31.28 3.53
209 210 4.215908 GGAGGGCTAAAAAGGGAATTAGG 58.784 47.826 0.00 0.00 31.28 2.69
210 211 4.867086 TGGAGGGCTAAAAAGGGAATTAG 58.133 43.478 0.00 0.00 33.28 1.73
211 212 4.542525 TCTGGAGGGCTAAAAAGGGAATTA 59.457 41.667 0.00 0.00 0.00 1.40
212 213 3.336694 TCTGGAGGGCTAAAAAGGGAATT 59.663 43.478 0.00 0.00 0.00 2.17
213 214 2.926329 TCTGGAGGGCTAAAAAGGGAAT 59.074 45.455 0.00 0.00 0.00 3.01
214 215 2.354328 TCTGGAGGGCTAAAAAGGGAA 58.646 47.619 0.00 0.00 0.00 3.97
215 216 2.053747 TCTGGAGGGCTAAAAAGGGA 57.946 50.000 0.00 0.00 0.00 4.20
216 217 2.899303 TTCTGGAGGGCTAAAAAGGG 57.101 50.000 0.00 0.00 0.00 3.95
235 236 7.667219 TGCAATCAGGAGAGATACTTTCTTTTT 59.333 33.333 0.00 0.00 33.74 1.94
236 237 7.170965 TGCAATCAGGAGAGATACTTTCTTTT 58.829 34.615 0.00 0.00 33.74 2.27
237 238 6.715280 TGCAATCAGGAGAGATACTTTCTTT 58.285 36.000 0.00 0.00 33.74 2.52
238 239 6.305272 TGCAATCAGGAGAGATACTTTCTT 57.695 37.500 0.00 0.00 33.74 2.52
239 240 5.946942 TGCAATCAGGAGAGATACTTTCT 57.053 39.130 0.00 0.00 37.41 2.52
241 242 4.820716 GCATGCAATCAGGAGAGATACTTT 59.179 41.667 14.21 0.00 0.00 2.66
242 243 4.141551 TGCATGCAATCAGGAGAGATACTT 60.142 41.667 20.30 0.00 0.00 2.24
243 244 3.390311 TGCATGCAATCAGGAGAGATACT 59.610 43.478 20.30 0.00 0.00 2.12
244 245 3.736720 TGCATGCAATCAGGAGAGATAC 58.263 45.455 20.30 0.00 0.00 2.24
245 246 4.635699 ATGCATGCAATCAGGAGAGATA 57.364 40.909 26.68 0.00 0.00 1.98
246 247 3.510531 ATGCATGCAATCAGGAGAGAT 57.489 42.857 26.68 0.00 0.00 2.75
247 248 4.286291 AGATATGCATGCAATCAGGAGAGA 59.714 41.667 26.68 0.00 0.00 3.10
248 249 4.580868 AGATATGCATGCAATCAGGAGAG 58.419 43.478 26.68 0.00 0.00 3.20
249 250 4.565028 GGAGATATGCATGCAATCAGGAGA 60.565 45.833 26.68 0.00 0.00 3.71
250 251 3.690139 GGAGATATGCATGCAATCAGGAG 59.310 47.826 26.68 0.00 0.00 3.69
251 252 3.329814 AGGAGATATGCATGCAATCAGGA 59.670 43.478 26.68 6.36 0.00 3.86
252 253 3.687125 AGGAGATATGCATGCAATCAGG 58.313 45.455 26.68 0.00 0.00 3.86
254 255 4.466827 ACAAGGAGATATGCATGCAATCA 58.533 39.130 26.68 13.44 0.00 2.57
255 256 5.391736 GCTACAAGGAGATATGCATGCAATC 60.392 44.000 26.68 24.83 0.00 2.67
257 258 3.817084 GCTACAAGGAGATATGCATGCAA 59.183 43.478 26.68 14.46 0.00 4.08
258 259 3.181452 TGCTACAAGGAGATATGCATGCA 60.181 43.478 25.04 25.04 0.00 3.96
259 260 3.405831 TGCTACAAGGAGATATGCATGC 58.594 45.455 11.82 11.82 0.00 4.06
263 264 6.238593 CCTTCTTTTGCTACAAGGAGATATGC 60.239 42.308 0.00 0.00 38.15 3.14
266 267 6.620877 TCCTTCTTTTGCTACAAGGAGATA 57.379 37.500 0.00 0.00 39.63 1.98
267 268 5.505181 TCCTTCTTTTGCTACAAGGAGAT 57.495 39.130 0.00 0.00 39.63 2.75
268 269 4.974645 TCCTTCTTTTGCTACAAGGAGA 57.025 40.909 0.00 0.00 39.63 3.71
270 271 6.976934 ATTTTCCTTCTTTTGCTACAAGGA 57.023 33.333 0.00 0.00 42.23 3.36
271 272 8.743714 AGATATTTTCCTTCTTTTGCTACAAGG 58.256 33.333 0.00 0.00 37.36 3.61
301 302 9.412460 AGGAAAGAAAGATACATGCAATCAATA 57.588 29.630 10.38 0.00 0.00 1.90
304 305 6.405065 GCAGGAAAGAAAGATACATGCAATCA 60.405 38.462 10.38 0.00 38.00 2.57
306 307 5.419788 TGCAGGAAAGAAAGATACATGCAAT 59.580 36.000 0.00 0.00 43.21 3.56
307 308 4.766373 TGCAGGAAAGAAAGATACATGCAA 59.234 37.500 0.00 0.00 43.21 4.08
309 310 4.397417 AGTGCAGGAAAGAAAGATACATGC 59.603 41.667 0.00 0.00 38.45 4.06
310 311 5.645067 TGAGTGCAGGAAAGAAAGATACATG 59.355 40.000 0.00 0.00 0.00 3.21
311 312 5.809001 TGAGTGCAGGAAAGAAAGATACAT 58.191 37.500 0.00 0.00 0.00 2.29
312 313 5.221722 ACTGAGTGCAGGAAAGAAAGATACA 60.222 40.000 0.00 0.00 46.60 2.29
313 314 5.121454 CACTGAGTGCAGGAAAGAAAGATAC 59.879 44.000 0.00 0.00 46.60 2.24
315 316 4.070716 CACTGAGTGCAGGAAAGAAAGAT 58.929 43.478 0.00 0.00 46.60 2.40
316 317 3.134623 TCACTGAGTGCAGGAAAGAAAGA 59.865 43.478 7.93 0.00 46.60 2.52
317 318 3.470709 TCACTGAGTGCAGGAAAGAAAG 58.529 45.455 7.93 0.00 46.60 2.62
318 319 3.558931 TCACTGAGTGCAGGAAAGAAA 57.441 42.857 7.93 0.00 46.60 2.52
319 320 3.777106 ATCACTGAGTGCAGGAAAGAA 57.223 42.857 7.93 0.00 46.60 2.52
320 321 3.777106 AATCACTGAGTGCAGGAAAGA 57.223 42.857 7.93 0.00 46.60 2.52
321 322 3.611057 GCAAATCACTGAGTGCAGGAAAG 60.611 47.826 7.93 0.00 46.60 2.62
322 323 2.294233 GCAAATCACTGAGTGCAGGAAA 59.706 45.455 7.93 0.00 46.60 3.13
323 324 1.881973 GCAAATCACTGAGTGCAGGAA 59.118 47.619 7.93 0.00 46.60 3.36
325 326 1.531423 AGCAAATCACTGAGTGCAGG 58.469 50.000 7.93 0.00 46.60 4.85
327 328 1.001048 GCAAGCAAATCACTGAGTGCA 60.001 47.619 7.93 0.00 39.50 4.57
329 330 1.610038 TGGCAAGCAAATCACTGAGTG 59.390 47.619 6.18 6.18 34.45 3.51
331 332 1.884579 AGTGGCAAGCAAATCACTGAG 59.115 47.619 0.00 0.00 38.80 3.35
333 334 3.568538 GTTAGTGGCAAGCAAATCACTG 58.431 45.455 10.58 0.00 40.24 3.66
334 335 2.558359 GGTTAGTGGCAAGCAAATCACT 59.442 45.455 6.85 6.85 42.32 3.41
335 336 2.295909 TGGTTAGTGGCAAGCAAATCAC 59.704 45.455 0.00 0.00 33.23 3.06
337 338 3.243704 TGTTGGTTAGTGGCAAGCAAATC 60.244 43.478 4.05 0.00 44.76 2.17
338 339 2.697751 TGTTGGTTAGTGGCAAGCAAAT 59.302 40.909 4.05 0.00 44.76 2.32
339 340 2.103373 TGTTGGTTAGTGGCAAGCAAA 58.897 42.857 4.05 0.00 44.76 3.68
340 341 1.769026 TGTTGGTTAGTGGCAAGCAA 58.231 45.000 0.00 0.00 42.03 3.91
341 342 1.993956 ATGTTGGTTAGTGGCAAGCA 58.006 45.000 0.00 0.00 34.28 3.91
342 343 4.718940 AATATGTTGGTTAGTGGCAAGC 57.281 40.909 0.00 0.00 0.00 4.01
343 344 7.995289 TGATAAATATGTTGGTTAGTGGCAAG 58.005 34.615 0.00 0.00 0.00 4.01
344 345 7.946381 TGATAAATATGTTGGTTAGTGGCAA 57.054 32.000 0.00 0.00 0.00 4.52
345 346 7.068103 CCTTGATAAATATGTTGGTTAGTGGCA 59.932 37.037 0.00 0.00 0.00 4.92
346 347 7.425606 CCTTGATAAATATGTTGGTTAGTGGC 58.574 38.462 0.00 0.00 0.00 5.01
347 348 7.559897 ACCCTTGATAAATATGTTGGTTAGTGG 59.440 37.037 0.00 0.00 0.00 4.00
362 363 9.589461 TGTTAGGACAAAATTACCCTTGATAAA 57.411 29.630 0.00 0.00 31.49 1.40
363 364 9.016438 GTGTTAGGACAAAATTACCCTTGATAA 57.984 33.333 0.00 0.00 37.57 1.75
364 365 7.612633 GGTGTTAGGACAAAATTACCCTTGATA 59.387 37.037 0.00 0.00 37.57 2.15
365 366 6.436218 GGTGTTAGGACAAAATTACCCTTGAT 59.564 38.462 0.00 0.00 37.57 2.57
366 367 5.771165 GGTGTTAGGACAAAATTACCCTTGA 59.229 40.000 0.00 0.00 37.57 3.02
367 368 5.773176 AGGTGTTAGGACAAAATTACCCTTG 59.227 40.000 0.00 0.00 37.57 3.61
368 369 5.960704 AGGTGTTAGGACAAAATTACCCTT 58.039 37.500 0.00 0.00 37.57 3.95
369 370 5.312443 AGAGGTGTTAGGACAAAATTACCCT 59.688 40.000 0.00 0.00 37.57 4.34
370 371 5.567430 AGAGGTGTTAGGACAAAATTACCC 58.433 41.667 0.00 0.00 37.57 3.69
379 380 8.148351 GCACATAAATATAGAGGTGTTAGGACA 58.852 37.037 0.00 0.00 0.00 4.02
381 382 7.512746 AGGCACATAAATATAGAGGTGTTAGGA 59.487 37.037 0.00 0.00 0.00 2.94
382 383 7.680730 AGGCACATAAATATAGAGGTGTTAGG 58.319 38.462 0.00 0.00 0.00 2.69
383 384 8.993121 CAAGGCACATAAATATAGAGGTGTTAG 58.007 37.037 0.00 0.00 0.00 2.34
385 386 6.772716 CCAAGGCACATAAATATAGAGGTGTT 59.227 38.462 0.00 0.00 0.00 3.32
387 388 6.299141 ACCAAGGCACATAAATATAGAGGTG 58.701 40.000 0.00 0.00 0.00 4.00
388 389 6.101150 TGACCAAGGCACATAAATATAGAGGT 59.899 38.462 0.00 0.00 0.00 3.85
389 390 6.428159 GTGACCAAGGCACATAAATATAGAGG 59.572 42.308 0.00 0.00 36.31 3.69
390 391 6.428159 GGTGACCAAGGCACATAAATATAGAG 59.572 42.308 2.52 0.00 37.99 2.43
394 395 3.882888 CGGTGACCAAGGCACATAAATAT 59.117 43.478 1.11 0.00 37.99 1.28
395 396 3.275143 CGGTGACCAAGGCACATAAATA 58.725 45.455 1.11 0.00 37.99 1.40
396 397 2.091541 CGGTGACCAAGGCACATAAAT 58.908 47.619 1.11 0.00 37.99 1.40
397 398 1.202830 ACGGTGACCAAGGCACATAAA 60.203 47.619 1.11 0.00 37.99 1.40
399 400 0.398696 AACGGTGACCAAGGCACATA 59.601 50.000 1.11 0.00 37.99 2.29
400 401 0.467290 AAACGGTGACCAAGGCACAT 60.467 50.000 1.11 0.00 37.99 3.21
403 404 0.394488 TTGAAACGGTGACCAAGGCA 60.394 50.000 1.11 0.00 0.00 4.75
404 405 0.741915 TTTGAAACGGTGACCAAGGC 59.258 50.000 1.11 0.00 0.00 4.35
405 406 3.512033 TTTTTGAAACGGTGACCAAGG 57.488 42.857 1.11 0.00 0.00 3.61
406 407 7.863375 TGTATTATTTTTGAAACGGTGACCAAG 59.137 33.333 1.11 0.00 0.00 3.61
407 408 7.648510 GTGTATTATTTTTGAAACGGTGACCAA 59.351 33.333 1.11 0.00 0.00 3.67
408 409 7.140048 GTGTATTATTTTTGAAACGGTGACCA 58.860 34.615 1.11 0.00 0.00 4.02
409 410 6.583427 GGTGTATTATTTTTGAAACGGTGACC 59.417 38.462 0.00 0.00 0.00 4.02
410 411 7.364970 AGGTGTATTATTTTTGAAACGGTGAC 58.635 34.615 0.00 0.00 0.00 3.67
411 412 7.513371 AGGTGTATTATTTTTGAAACGGTGA 57.487 32.000 0.00 0.00 0.00 4.02
412 413 9.120422 GTAAGGTGTATTATTTTTGAAACGGTG 57.880 33.333 0.00 0.00 0.00 4.94
434 435 4.161754 ACTCCCTCCGTTCCTTTATGTAAG 59.838 45.833 0.00 0.00 0.00 2.34
435 436 4.098894 ACTCCCTCCGTTCCTTTATGTAA 58.901 43.478 0.00 0.00 0.00 2.41
436 437 3.716431 ACTCCCTCCGTTCCTTTATGTA 58.284 45.455 0.00 0.00 0.00 2.29
439 440 4.720273 ACAATACTCCCTCCGTTCCTTTAT 59.280 41.667 0.00 0.00 0.00 1.40
441 442 2.910977 ACAATACTCCCTCCGTTCCTTT 59.089 45.455 0.00 0.00 0.00 3.11
442 443 2.500504 GACAATACTCCCTCCGTTCCTT 59.499 50.000 0.00 0.00 0.00 3.36
443 444 2.108970 GACAATACTCCCTCCGTTCCT 58.891 52.381 0.00 0.00 0.00 3.36
444 445 2.108970 AGACAATACTCCCTCCGTTCC 58.891 52.381 0.00 0.00 0.00 3.62
445 446 4.996788 TTAGACAATACTCCCTCCGTTC 57.003 45.455 0.00 0.00 0.00 3.95
446 447 6.402456 GTATTAGACAATACTCCCTCCGTT 57.598 41.667 1.22 0.00 42.18 4.44
486 487 9.216117 GGTACGATGCAATTTAGTATAGGAAAT 57.784 33.333 0.00 0.00 0.00 2.17
542 543 9.877178 ACCATTTTGTGTCTTTTTGTATTGTTA 57.123 25.926 0.00 0.00 0.00 2.41
543 544 8.785329 ACCATTTTGTGTCTTTTTGTATTGTT 57.215 26.923 0.00 0.00 0.00 2.83
548 549 8.573035 GGATCTACCATTTTGTGTCTTTTTGTA 58.427 33.333 0.00 0.00 38.79 2.41
549 550 7.069331 TGGATCTACCATTTTGTGTCTTTTTGT 59.931 33.333 0.00 0.00 44.64 2.83
550 551 7.432869 TGGATCTACCATTTTGTGTCTTTTTG 58.567 34.615 0.00 0.00 44.64 2.44
551 552 7.595819 TGGATCTACCATTTTGTGTCTTTTT 57.404 32.000 0.00 0.00 44.64 1.94
579 580 4.283212 TGACATGTATTGATGGCCGAGATA 59.717 41.667 0.00 0.00 29.16 1.98
584 585 3.058016 GGATTGACATGTATTGATGGCCG 60.058 47.826 0.00 0.00 29.16 6.13
773 774 6.755206 TGCACGCTTATATTGGTAGAATACT 58.245 36.000 0.00 0.00 42.51 2.12
778 779 4.213270 GCATTGCACGCTTATATTGGTAGA 59.787 41.667 3.15 0.00 0.00 2.59
921 1044 8.410912 GGTGTTCTTAATTTATATCCCACCAAC 58.589 37.037 0.00 0.00 38.72 3.77
957 1084 6.294065 GGGAAGAAGATGATGATGATTCTTGC 60.294 42.308 10.40 10.40 43.45 4.01
1003 1130 2.610438 AAGAGGTTGGCCAATGATGT 57.390 45.000 23.66 6.41 37.19 3.06
1090 1221 1.150827 GCACCGTGTTGTACCCTTAC 58.849 55.000 0.00 0.00 0.00 2.34
1091 1222 0.035176 GGCACCGTGTTGTACCCTTA 59.965 55.000 0.00 0.00 0.00 2.69
1092 1223 1.228033 GGCACCGTGTTGTACCCTT 60.228 57.895 0.00 0.00 0.00 3.95
1181 1312 2.293955 TGACGGTACATGTCTTCGTCAA 59.706 45.455 30.76 21.13 38.93 3.18
1185 1316 2.603110 CCAATGACGGTACATGTCTTCG 59.397 50.000 0.00 7.74 0.00 3.79
1248 5568 2.224402 GGAGTGCAGAAGAGGTGACTTT 60.224 50.000 0.00 0.00 44.43 2.66
1404 5724 2.606587 GCCCTTCCTGAGCCCAAGA 61.607 63.158 0.00 0.00 0.00 3.02
1419 5739 4.864334 CTCCAGATGCCGGTGCCC 62.864 72.222 1.90 0.00 36.33 5.36
1443 5763 2.176247 TGACTCCCTTCCCATAGTCC 57.824 55.000 0.00 0.00 38.04 3.85
1506 5826 3.637432 TGCGATGTTTTCACCATCAAAC 58.363 40.909 0.00 0.00 38.90 2.93
1518 5838 2.128853 CTGGTGGCGTTGCGATGTTT 62.129 55.000 0.00 0.00 0.00 2.83
1627 5953 2.120274 CCCATGCCCCTGTTGGTT 59.880 61.111 0.00 0.00 0.00 3.67
2246 6594 1.796253 CGTTCAATAGCACTACGCCGA 60.796 52.381 0.00 0.00 44.04 5.54
2355 6703 2.285256 GCTGTTTGTCGATGTCGCATAG 60.285 50.000 0.00 0.00 39.60 2.23
2399 6753 1.066257 CCAAGCAGTGTGTTGTGGC 59.934 57.895 6.61 0.00 0.00 5.01
2802 7156 5.651387 AGTCGATGATACCCATGTCATAG 57.349 43.478 0.00 0.00 36.85 2.23
2880 7234 2.072298 GCGCAAGTCAATCTCTTGTCT 58.928 47.619 0.30 0.00 42.67 3.41
3245 7602 3.869246 ACAACGCACCTAAATATTCTCGG 59.131 43.478 0.00 0.00 0.00 4.63
3246 7603 4.260212 CCACAACGCACCTAAATATTCTCG 60.260 45.833 0.00 0.00 0.00 4.04
3253 7610 3.005367 CCTTTTCCACAACGCACCTAAAT 59.995 43.478 0.00 0.00 0.00 1.40
3325 7687 8.519526 TGATCGATTTAACAATTTAAGCAACCT 58.480 29.630 0.00 0.00 0.00 3.50
3337 7702 8.601845 TCTCAGAAAGTTGATCGATTTAACAA 57.398 30.769 21.18 10.16 0.00 2.83
3371 7736 7.790027 ACTCATGAATTAATCTGACAGTAGCT 58.210 34.615 1.59 0.00 0.00 3.32
3446 7811 4.771903 TGTGCTTTTGTTCACCAGTACTA 58.228 39.130 0.00 0.00 32.51 1.82
3471 7836 4.360027 GCTCGCACTGCACACACG 62.360 66.667 1.11 0.00 0.00 4.49
3509 7874 2.819019 TGAATACCATGCATAATGCCGG 59.181 45.455 0.00 0.00 44.23 6.13
3563 7937 0.108585 TGACACTTGAGGGTTCAGCC 59.891 55.000 0.00 0.00 34.15 4.85
3586 7960 0.179163 GCGAATGCCCTGTTAACTGC 60.179 55.000 7.22 7.66 33.98 4.40
3587 7961 1.135689 GTGCGAATGCCCTGTTAACTG 60.136 52.381 7.22 6.33 41.78 3.16
3588 7962 1.165270 GTGCGAATGCCCTGTTAACT 58.835 50.000 7.22 0.00 41.78 2.24
3589 7963 0.878416 TGTGCGAATGCCCTGTTAAC 59.122 50.000 0.00 0.00 41.78 2.01
3590 7964 1.610363 TTGTGCGAATGCCCTGTTAA 58.390 45.000 0.00 0.00 41.78 2.01
3591 7965 1.610363 TTTGTGCGAATGCCCTGTTA 58.390 45.000 0.00 0.00 41.78 2.41
3592 7966 0.749649 TTTTGTGCGAATGCCCTGTT 59.250 45.000 0.00 0.00 41.78 3.16
3593 7967 0.749649 TTTTTGTGCGAATGCCCTGT 59.250 45.000 0.00 0.00 41.78 4.00
3594 7968 3.584586 TTTTTGTGCGAATGCCCTG 57.415 47.368 0.00 0.00 41.78 4.45
3613 7987 9.496873 GCCCCTGTTAACTGTTTTTATTTTTAT 57.503 29.630 7.22 0.00 0.00 1.40
3614 7988 8.483758 TGCCCCTGTTAACTGTTTTTATTTTTA 58.516 29.630 7.22 0.00 0.00 1.52
3615 7989 7.339482 TGCCCCTGTTAACTGTTTTTATTTTT 58.661 30.769 7.22 0.00 0.00 1.94
3616 7990 6.890293 TGCCCCTGTTAACTGTTTTTATTTT 58.110 32.000 7.22 0.00 0.00 1.82
3617 7991 6.099125 ACTGCCCCTGTTAACTGTTTTTATTT 59.901 34.615 7.22 0.00 0.00 1.40
3618 7992 5.600898 ACTGCCCCTGTTAACTGTTTTTATT 59.399 36.000 7.22 0.00 0.00 1.40
3619 7993 5.010617 CACTGCCCCTGTTAACTGTTTTTAT 59.989 40.000 7.22 0.00 0.00 1.40
3620 7994 4.339814 CACTGCCCCTGTTAACTGTTTTTA 59.660 41.667 7.22 0.00 0.00 1.52
3621 7995 3.132111 CACTGCCCCTGTTAACTGTTTTT 59.868 43.478 7.22 0.00 0.00 1.94
3622 7996 2.693074 CACTGCCCCTGTTAACTGTTTT 59.307 45.455 7.22 0.00 0.00 2.43
3623 7997 2.306847 CACTGCCCCTGTTAACTGTTT 58.693 47.619 7.22 0.00 0.00 2.83
3624 7998 1.478654 CCACTGCCCCTGTTAACTGTT 60.479 52.381 7.22 0.00 0.00 3.16
3625 7999 0.110486 CCACTGCCCCTGTTAACTGT 59.890 55.000 7.22 0.00 0.00 3.55
3662 8039 7.822161 TGAACTTGAAATTCAGGATTTGAGA 57.178 32.000 12.13 0.00 38.06 3.27
3719 8122 6.636454 TGGGACTAAATTCAAGATGGTACT 57.364 37.500 0.00 0.00 0.00 2.73
3720 8123 6.884836 ACTTGGGACTAAATTCAAGATGGTAC 59.115 38.462 8.76 0.00 38.96 3.34
3721 8124 7.027874 ACTTGGGACTAAATTCAAGATGGTA 57.972 36.000 8.76 0.00 38.96 3.25
3722 8125 5.892348 ACTTGGGACTAAATTCAAGATGGT 58.108 37.500 8.76 0.00 38.96 3.55
3723 8126 6.183347 AGACTTGGGACTAAATTCAAGATGG 58.817 40.000 8.76 0.00 38.96 3.51
3735 8183 1.561643 CTGGCTGAGACTTGGGACTA 58.438 55.000 0.00 0.00 0.00 2.59
3737 8185 1.376553 GCTGGCTGAGACTTGGGAC 60.377 63.158 0.00 0.00 0.00 4.46
3738 8186 2.596851 GGCTGGCTGAGACTTGGGA 61.597 63.158 0.00 0.00 0.00 4.37
3749 8557 1.340502 GCTTTTAGAGAAGGGCTGGCT 60.341 52.381 0.00 0.00 0.00 4.75
3793 8601 5.336213 GCAAGGAGCATATTCATATTGGTGG 60.336 44.000 0.00 0.00 44.79 4.61
3809 8617 3.810386 GGTTACTAGCTTATGCAAGGAGC 59.190 47.826 10.34 10.34 42.74 4.70
3832 8659 7.460910 AGGATTAAAAATGAAAAATGGCCAGT 58.539 30.769 13.05 5.37 0.00 4.00
3894 8724 0.889638 TAAAATTGGTGGCGCGTCCA 60.890 50.000 16.62 16.62 44.18 4.02
3895 8725 0.179174 CTAAAATTGGTGGCGCGTCC 60.179 55.000 8.89 10.74 0.00 4.79
3896 8726 0.519961 ACTAAAATTGGTGGCGCGTC 59.480 50.000 2.29 2.29 0.00 5.19
3897 8727 0.239879 CACTAAAATTGGTGGCGCGT 59.760 50.000 8.43 0.00 36.19 6.01
3898 8728 3.014369 CACTAAAATTGGTGGCGCG 57.986 52.632 0.00 0.00 36.19 6.86
3954 8785 1.453379 CCGCTCCCTCTTCCTCGTA 60.453 63.158 0.00 0.00 0.00 3.43
3974 8805 2.434884 CCGGAGCGCAGACACAAT 60.435 61.111 11.47 0.00 0.00 2.71
4009 8840 4.680237 CGCTGCTGACGGTCCCAA 62.680 66.667 5.55 0.00 0.00 4.12
4023 8857 3.308014 GAGAGTGCAGAAGGCCGCT 62.308 63.158 0.00 0.00 43.89 5.52
4104 8940 1.216710 GACGCTCTCCTTGGTCCTG 59.783 63.158 0.00 0.00 0.00 3.86
4185 9021 3.903714 TCCATATGATCTCACGGTCCAAT 59.096 43.478 3.65 0.00 0.00 3.16
4186 9022 3.304829 TCCATATGATCTCACGGTCCAA 58.695 45.455 3.65 0.00 0.00 3.53
4202 9038 1.342975 TGTGCCTGAGGTAGCTCCATA 60.343 52.381 18.90 5.84 39.02 2.74
4223 9059 1.151777 CGTATACAACTGGCAGCGGG 61.152 60.000 15.89 6.76 0.00 6.13
4224 9060 1.151777 CCGTATACAACTGGCAGCGG 61.152 60.000 15.89 13.56 0.00 5.52
4225 9061 1.151777 CCCGTATACAACTGGCAGCG 61.152 60.000 15.89 8.81 0.00 5.18
4226 9062 0.177141 TCCCGTATACAACTGGCAGC 59.823 55.000 15.89 0.00 32.70 5.25


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.