Multiple sequence alignment - TraesCS6B01G039800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G039800 chr6B 100.000 4289 0 0 1 4289 24884163 24888451 0.000000e+00 7921.0
1 TraesCS6B01G039800 chr6B 95.914 2839 82 12 1480 4289 24913829 24916662 0.000000e+00 4569.0
2 TraesCS6B01G039800 chr6B 93.239 2411 152 10 923 3328 24857808 24860212 0.000000e+00 3539.0
3 TraesCS6B01G039800 chr6B 79.124 3243 543 78 1118 4289 23547168 23543989 0.000000e+00 2115.0
4 TraesCS6B01G039800 chr6B 88.050 954 72 19 3372 4289 23444026 23443079 0.000000e+00 1092.0
5 TraesCS6B01G039800 chr6B 97.877 424 9 0 3866 4289 23401921 23401498 0.000000e+00 734.0
6 TraesCS6B01G039800 chr6B 80.656 915 126 27 3417 4289 24754738 24755643 0.000000e+00 662.0
7 TraesCS6B01G039800 chr6B 87.671 511 30 15 704 1208 24913294 24913777 8.050000e-157 564.0
8 TraesCS6B01G039800 chr6B 96.602 206 3 3 694 899 24857338 24857539 5.310000e-89 339.0
9 TraesCS6B01G039800 chrUn 90.290 2966 237 22 694 3624 71425315 71428264 0.000000e+00 3834.0
10 TraesCS6B01G039800 chrUn 90.223 2966 239 22 694 3624 303148143 303151092 0.000000e+00 3823.0
11 TraesCS6B01G039800 chrUn 90.194 2784 225 20 873 3624 71483161 71485928 0.000000e+00 3585.0
12 TraesCS6B01G039800 chrUn 90.399 2031 178 15 1348 3365 318622070 318620044 0.000000e+00 2654.0
13 TraesCS6B01G039800 chrUn 92.353 1177 80 5 2253 3420 382459578 382458403 0.000000e+00 1666.0
14 TraesCS6B01G039800 chrUn 79.623 2385 427 45 1118 3468 307804895 307802536 0.000000e+00 1657.0
15 TraesCS6B01G039800 chrUn 79.572 2384 429 44 1118 3468 71452882 71455240 0.000000e+00 1652.0
16 TraesCS6B01G039800 chrUn 79.759 2322 417 40 1179 3468 315167719 315165419 0.000000e+00 1635.0
17 TraesCS6B01G039800 chrUn 79.759 2322 417 40 1179 3468 324687758 324685458 0.000000e+00 1635.0
18 TraesCS6B01G039800 chrUn 92.516 775 58 0 1476 2250 318619489 318618715 0.000000e+00 1110.0
19 TraesCS6B01G039800 chrUn 86.874 899 71 21 3435 4289 71412700 71413595 0.000000e+00 963.0
20 TraesCS6B01G039800 chrUn 86.874 899 71 21 3435 4289 71471761 71472656 0.000000e+00 963.0
21 TraesCS6B01G039800 chrUn 86.096 899 78 20 3435 4289 371024674 371025569 0.000000e+00 924.0
22 TraesCS6B01G039800 chrUn 85.906 894 79 20 3435 4284 372065206 372064316 0.000000e+00 909.0
23 TraesCS6B01G039800 chrUn 83.486 872 127 15 2507 3365 372037856 372038723 0.000000e+00 797.0
24 TraesCS6B01G039800 chrUn 79.245 1166 217 17 1118 2275 71409857 71411005 0.000000e+00 789.0
25 TraesCS6B01G039800 chrUn 89.009 555 36 13 694 1237 326791838 326792378 0.000000e+00 664.0
26 TraesCS6B01G039800 chrUn 90.028 361 24 8 3941 4289 425462263 425461903 1.410000e-124 457.0
27 TraesCS6B01G039800 chrUn 90.062 322 25 4 694 1011 268857101 268857419 1.110000e-110 411.0
28 TraesCS6B01G039800 chrUn 90.062 322 25 4 694 1011 268865583 268865901 1.110000e-110 411.0
29 TraesCS6B01G039800 chrUn 90.062 322 25 4 694 1011 285677357 285677675 1.110000e-110 411.0
30 TraesCS6B01G039800 chrUn 89.905 317 26 3 694 1007 288972998 288972685 1.860000e-108 403.0
31 TraesCS6B01G039800 chrUn 89.441 322 27 4 694 1011 71448351 71448669 2.400000e-107 399.0
32 TraesCS6B01G039800 chrUn 89.590 317 27 3 694 1007 290004270 290004583 8.640000e-107 398.0
33 TraesCS6B01G039800 chrUn 91.358 162 11 2 541 699 268856853 268857014 7.220000e-53 219.0
34 TraesCS6B01G039800 chrUn 91.358 162 11 2 541 699 268865335 268865496 7.220000e-53 219.0
35 TraesCS6B01G039800 chrUn 91.358 162 11 2 541 699 285677109 285677270 7.220000e-53 219.0
36 TraesCS6B01G039800 chr6A 88.396 2456 218 39 1476 3884 14403398 14405833 0.000000e+00 2894.0
37 TraesCS6B01G039800 chr6A 85.987 1049 84 27 3274 4289 14492736 14493754 0.000000e+00 1064.0
38 TraesCS6B01G039800 chr6A 86.165 412 43 3 3879 4289 14411169 14411567 2.370000e-117 433.0
39 TraesCS6B01G039800 chr6A 83.790 438 43 13 3265 3688 14402889 14403312 1.450000e-104 390.0
40 TraesCS6B01G039800 chr6A 90.625 64 6 0 3695 3758 15318938 15319001 7.640000e-13 86.1
41 TraesCS6B01G039800 chr6D 82.848 1580 252 15 1628 3199 13146038 13147606 0.000000e+00 1399.0
42 TraesCS6B01G039800 chr6D 87.273 1045 88 19 3274 4289 13276066 13277094 0.000000e+00 1151.0
43 TraesCS6B01G039800 chr7D 85.794 535 61 9 1 533 606957100 606956579 1.740000e-153 553.0
44 TraesCS6B01G039800 chr7A 83.521 267 37 5 2 266 425141997 425142258 4.280000e-60 243.0
45 TraesCS6B01G039800 chr5D 74.809 262 62 2 1337 1596 33679322 33679063 9.750000e-22 115.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G039800 chr6B 24884163 24888451 4288 False 7921.0 7921 100.0000 1 4289 1 chr6B.!!$F2 4288
1 TraesCS6B01G039800 chr6B 24913294 24916662 3368 False 2566.5 4569 91.7925 704 4289 2 chr6B.!!$F4 3585
2 TraesCS6B01G039800 chr6B 23543989 23547168 3179 True 2115.0 2115 79.1240 1118 4289 1 chr6B.!!$R3 3171
3 TraesCS6B01G039800 chr6B 24857338 24860212 2874 False 1939.0 3539 94.9205 694 3328 2 chr6B.!!$F3 2634
4 TraesCS6B01G039800 chr6B 23443079 23444026 947 True 1092.0 1092 88.0500 3372 4289 1 chr6B.!!$R2 917
5 TraesCS6B01G039800 chr6B 24754738 24755643 905 False 662.0 662 80.6560 3417 4289 1 chr6B.!!$F1 872
6 TraesCS6B01G039800 chrUn 71425315 71428264 2949 False 3834.0 3834 90.2900 694 3624 1 chrUn.!!$F1 2930
7 TraesCS6B01G039800 chrUn 303148143 303151092 2949 False 3823.0 3823 90.2230 694 3624 1 chrUn.!!$F7 2930
8 TraesCS6B01G039800 chrUn 71483161 71485928 2767 False 3585.0 3585 90.1940 873 3624 1 chrUn.!!$F5 2751
9 TraesCS6B01G039800 chrUn 318618715 318622070 3355 True 1882.0 2654 91.4575 1348 3365 2 chrUn.!!$R8 2017
10 TraesCS6B01G039800 chrUn 382458403 382459578 1175 True 1666.0 1666 92.3530 2253 3420 1 chrUn.!!$R6 1167
11 TraesCS6B01G039800 chrUn 307802536 307804895 2359 True 1657.0 1657 79.6230 1118 3468 1 chrUn.!!$R2 2350
12 TraesCS6B01G039800 chrUn 71452882 71455240 2358 False 1652.0 1652 79.5720 1118 3468 1 chrUn.!!$F3 2350
13 TraesCS6B01G039800 chrUn 315165419 315167719 2300 True 1635.0 1635 79.7590 1179 3468 1 chrUn.!!$R3 2289
14 TraesCS6B01G039800 chrUn 324685458 324687758 2300 True 1635.0 1635 79.7590 1179 3468 1 chrUn.!!$R4 2289
15 TraesCS6B01G039800 chrUn 71471761 71472656 895 False 963.0 963 86.8740 3435 4289 1 chrUn.!!$F4 854
16 TraesCS6B01G039800 chrUn 371024674 371025569 895 False 924.0 924 86.0960 3435 4289 1 chrUn.!!$F9 854
17 TraesCS6B01G039800 chrUn 372064316 372065206 890 True 909.0 909 85.9060 3435 4284 1 chrUn.!!$R5 849
18 TraesCS6B01G039800 chrUn 71409857 71413595 3738 False 876.0 963 83.0595 1118 4289 2 chrUn.!!$F11 3171
19 TraesCS6B01G039800 chrUn 372037856 372038723 867 False 797.0 797 83.4860 2507 3365 1 chrUn.!!$F10 858
20 TraesCS6B01G039800 chrUn 326791838 326792378 540 False 664.0 664 89.0090 694 1237 1 chrUn.!!$F8 543
21 TraesCS6B01G039800 chrUn 268856853 268857419 566 False 315.0 411 90.7100 541 1011 2 chrUn.!!$F12 470
22 TraesCS6B01G039800 chrUn 268865335 268865901 566 False 315.0 411 90.7100 541 1011 2 chrUn.!!$F13 470
23 TraesCS6B01G039800 chrUn 285677109 285677675 566 False 315.0 411 90.7100 541 1011 2 chrUn.!!$F14 470
24 TraesCS6B01G039800 chr6A 14402889 14405833 2944 False 1642.0 2894 86.0930 1476 3884 2 chr6A.!!$F4 2408
25 TraesCS6B01G039800 chr6A 14492736 14493754 1018 False 1064.0 1064 85.9870 3274 4289 1 chr6A.!!$F2 1015
26 TraesCS6B01G039800 chr6D 13146038 13147606 1568 False 1399.0 1399 82.8480 1628 3199 1 chr6D.!!$F1 1571
27 TraesCS6B01G039800 chr6D 13276066 13277094 1028 False 1151.0 1151 87.2730 3274 4289 1 chr6D.!!$F2 1015
28 TraesCS6B01G039800 chr7D 606956579 606957100 521 True 553.0 553 85.7940 1 533 1 chr7D.!!$R1 532

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
206 208 0.026803 GGCAACACGCGATCAGAATC 59.973 55.000 15.93 0.0 43.84 2.52 F
519 521 0.033920 ACCCAGTTACGGTCGTTTCC 59.966 55.000 0.16 0.0 0.00 3.13 F
838 1211 0.531657 TTACGACCCGGTGTATGTGG 59.468 55.000 0.00 0.0 0.00 4.17 F
917 1290 0.726827 CGGTATGCACACACATGACC 59.273 55.000 0.00 0.0 0.00 4.02 F
1472 1862 1.079503 GTTGCGCTCCCTCAAAGTAG 58.920 55.000 9.73 0.0 0.00 2.57 F
2917 3923 6.483307 TGAATGTCTCGAACAATCTTTTGTCT 59.517 34.615 13.32 0.0 45.30 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1466 1856 0.526662 CCGCTGAGGTCGACTACTTT 59.473 55.000 16.46 0.00 34.51 2.66 R
1472 1862 3.112709 GTTGCCGCTGAGGTCGAC 61.113 66.667 7.13 7.13 43.70 4.20 R
2668 3111 3.174788 GACAAATCGACACCGGCC 58.825 61.111 0.00 0.00 36.24 6.13 R
2917 3923 2.675242 CCCGGTGGGTATCTTGCCA 61.675 63.158 0.00 0.00 38.25 4.92 R
3040 4046 3.430098 CCTCCTCTTCACCATTTCTCTCG 60.430 52.174 0.00 0.00 0.00 4.04 R
4062 5569 0.103390 TCCGTCGTGTTCAGCTTTGA 59.897 50.000 0.00 0.00 0.00 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 0.893727 GGTGGAACAGGCGTGGAAAT 60.894 55.000 11.67 0.00 41.80 2.17
41 42 4.816392 ACAGGCGTGGAAATAAAATTTCC 58.184 39.130 19.89 19.89 46.18 3.13
64 66 6.488683 TCCAGTTTCGTTGATATGGAACTTTT 59.511 34.615 0.00 0.00 37.06 2.27
82 84 7.360776 GGAACTTTTTGTTTTGAACATGAGCAA 60.361 33.333 0.00 0.00 41.79 3.91
84 86 8.042944 ACTTTTTGTTTTGAACATGAGCAAAT 57.957 26.923 14.94 0.57 41.79 2.32
85 87 7.964011 ACTTTTTGTTTTGAACATGAGCAAATG 59.036 29.630 14.94 0.00 41.79 2.32
87 89 3.808726 TGTTTTGAACATGAGCAAATGGC 59.191 39.130 14.94 10.60 38.68 4.40
89 91 5.221402 TGTTTTGAACATGAGCAAATGGCTA 60.221 36.000 14.94 2.18 45.08 3.93
107 109 4.990543 GCTATTTTTCAGCCCAACAAAC 57.009 40.909 0.00 0.00 32.68 2.93
109 111 4.211164 GCTATTTTTCAGCCCAACAAACAC 59.789 41.667 0.00 0.00 32.68 3.32
110 112 3.685139 TTTTTCAGCCCAACAAACACA 57.315 38.095 0.00 0.00 0.00 3.72
111 113 2.663826 TTTCAGCCCAACAAACACAC 57.336 45.000 0.00 0.00 0.00 3.82
113 115 1.550327 TCAGCCCAACAAACACACAA 58.450 45.000 0.00 0.00 0.00 3.33
114 116 2.106566 TCAGCCCAACAAACACACAAT 58.893 42.857 0.00 0.00 0.00 2.71
115 117 2.499289 TCAGCCCAACAAACACACAATT 59.501 40.909 0.00 0.00 0.00 2.32
116 118 3.701542 TCAGCCCAACAAACACACAATTA 59.298 39.130 0.00 0.00 0.00 1.40
118 120 3.069443 AGCCCAACAAACACACAATTAGG 59.931 43.478 0.00 0.00 0.00 2.69
119 121 3.181470 GCCCAACAAACACACAATTAGGT 60.181 43.478 0.00 0.00 0.00 3.08
120 122 4.616953 CCCAACAAACACACAATTAGGTC 58.383 43.478 0.00 0.00 0.00 3.85
121 123 4.098654 CCCAACAAACACACAATTAGGTCA 59.901 41.667 0.00 0.00 0.00 4.02
122 124 5.221422 CCCAACAAACACACAATTAGGTCAT 60.221 40.000 0.00 0.00 0.00 3.06
123 125 6.015856 CCCAACAAACACACAATTAGGTCATA 60.016 38.462 0.00 0.00 0.00 2.15
127 129 6.544197 ACAAACACACAATTAGGTCATACACA 59.456 34.615 0.00 0.00 0.00 3.72
128 130 6.554334 AACACACAATTAGGTCATACACAC 57.446 37.500 0.00 0.00 0.00 3.82
129 131 4.688879 ACACACAATTAGGTCATACACACG 59.311 41.667 0.00 0.00 0.00 4.49
130 132 4.926832 CACACAATTAGGTCATACACACGA 59.073 41.667 0.00 0.00 0.00 4.35
131 133 5.407084 CACACAATTAGGTCATACACACGAA 59.593 40.000 0.00 0.00 0.00 3.85
132 134 5.992829 ACACAATTAGGTCATACACACGAAA 59.007 36.000 0.00 0.00 0.00 3.46
134 136 7.015289 CACAATTAGGTCATACACACGAAAAG 58.985 38.462 0.00 0.00 0.00 2.27
135 137 6.708949 ACAATTAGGTCATACACACGAAAAGT 59.291 34.615 0.00 0.00 0.00 2.66
136 138 7.874016 ACAATTAGGTCATACACACGAAAAGTA 59.126 33.333 0.00 0.00 0.00 2.24
137 139 8.380644 CAATTAGGTCATACACACGAAAAGTAG 58.619 37.037 0.00 0.00 0.00 2.57
138 140 5.717078 AGGTCATACACACGAAAAGTAGA 57.283 39.130 0.00 0.00 0.00 2.59
139 141 6.092955 AGGTCATACACACGAAAAGTAGAA 57.907 37.500 0.00 0.00 0.00 2.10
140 142 6.698380 AGGTCATACACACGAAAAGTAGAAT 58.302 36.000 0.00 0.00 0.00 2.40
141 143 6.590292 AGGTCATACACACGAAAAGTAGAATG 59.410 38.462 0.00 0.00 0.00 2.67
142 144 6.588756 GGTCATACACACGAAAAGTAGAATGA 59.411 38.462 0.00 0.00 0.00 2.57
143 145 7.411588 GGTCATACACACGAAAAGTAGAATGAC 60.412 40.741 0.00 0.00 30.36 3.06
145 147 4.062991 ACACACGAAAAGTAGAATGACCC 58.937 43.478 0.00 0.00 0.00 4.46
146 148 4.062293 CACACGAAAAGTAGAATGACCCA 58.938 43.478 0.00 0.00 0.00 4.51
147 149 4.152402 CACACGAAAAGTAGAATGACCCAG 59.848 45.833 0.00 0.00 0.00 4.45
148 150 4.039973 ACACGAAAAGTAGAATGACCCAGA 59.960 41.667 0.00 0.00 0.00 3.86
149 151 5.178797 CACGAAAAGTAGAATGACCCAGAT 58.821 41.667 0.00 0.00 0.00 2.90
151 153 6.477033 CACGAAAAGTAGAATGACCCAGATAG 59.523 42.308 0.00 0.00 0.00 2.08
153 155 6.567602 AAAAGTAGAATGACCCAGATAGCT 57.432 37.500 0.00 0.00 0.00 3.32
156 158 5.211973 AGTAGAATGACCCAGATAGCTCAA 58.788 41.667 0.00 0.00 0.00 3.02
158 160 4.036518 AGAATGACCCAGATAGCTCAACT 58.963 43.478 0.00 0.00 0.00 3.16
159 161 4.472833 AGAATGACCCAGATAGCTCAACTT 59.527 41.667 0.00 0.00 0.00 2.66
160 162 3.895232 TGACCCAGATAGCTCAACTTC 57.105 47.619 0.00 0.00 0.00 3.01
162 164 2.427453 GACCCAGATAGCTCAACTTCGA 59.573 50.000 0.00 0.00 0.00 3.71
165 167 3.806521 CCCAGATAGCTCAACTTCGATTG 59.193 47.826 0.00 0.00 0.00 2.67
166 168 4.437239 CCAGATAGCTCAACTTCGATTGT 58.563 43.478 0.00 0.00 0.00 2.71
167 169 5.451937 CCCAGATAGCTCAACTTCGATTGTA 60.452 44.000 0.00 0.00 0.00 2.41
168 170 5.460419 CCAGATAGCTCAACTTCGATTGTAC 59.540 44.000 0.00 0.00 0.00 2.90
170 172 7.418408 CAGATAGCTCAACTTCGATTGTACTA 58.582 38.462 0.00 3.33 0.00 1.82
176 178 7.551974 AGCTCAACTTCGATTGTACTACTACTA 59.448 37.037 0.00 0.00 0.00 1.82
177 179 7.639461 GCTCAACTTCGATTGTACTACTACTAC 59.361 40.741 0.00 0.00 0.00 2.73
179 181 9.170734 TCAACTTCGATTGTACTACTACTACAT 57.829 33.333 0.00 0.00 0.00 2.29
180 182 9.435802 CAACTTCGATTGTACTACTACTACATC 57.564 37.037 0.00 0.00 0.00 3.06
182 184 9.170734 ACTTCGATTGTACTACTACTACATCAA 57.829 33.333 0.00 0.00 0.00 2.57
183 185 9.653067 CTTCGATTGTACTACTACTACATCAAG 57.347 37.037 0.00 0.00 0.00 3.02
185 187 7.281549 TCGATTGTACTACTACTACATCAAGCA 59.718 37.037 0.00 0.00 0.00 3.91
186 188 8.076781 CGATTGTACTACTACTACATCAAGCAT 58.923 37.037 0.00 0.00 0.00 3.79
187 189 9.186323 GATTGTACTACTACTACATCAAGCATG 57.814 37.037 0.00 0.00 38.64 4.06
188 190 7.039313 TGTACTACTACTACATCAAGCATGG 57.961 40.000 0.00 0.00 36.72 3.66
189 191 4.950050 ACTACTACTACATCAAGCATGGC 58.050 43.478 0.00 0.00 36.72 4.40
191 193 4.220693 ACTACTACATCAAGCATGGCAA 57.779 40.909 0.00 0.00 36.72 4.52
203 205 2.341911 TGGCAACACGCGATCAGA 59.658 55.556 15.93 0.00 46.17 3.27
204 206 1.301322 TGGCAACACGCGATCAGAA 60.301 52.632 15.93 0.00 46.17 3.02
205 207 0.673333 TGGCAACACGCGATCAGAAT 60.673 50.000 15.93 0.00 46.17 2.40
206 208 0.026803 GGCAACACGCGATCAGAATC 59.973 55.000 15.93 0.00 43.84 2.52
210 212 3.695816 CAACACGCGATCAGAATCTCTA 58.304 45.455 15.93 0.00 0.00 2.43
211 213 4.105486 CAACACGCGATCAGAATCTCTAA 58.895 43.478 15.93 0.00 0.00 2.10
213 215 4.541779 ACACGCGATCAGAATCTCTAATC 58.458 43.478 15.93 0.00 0.00 1.75
215 217 3.057174 ACGCGATCAGAATCTCTAATCCC 60.057 47.826 15.93 0.00 0.00 3.85
216 218 3.192422 CGCGATCAGAATCTCTAATCCCT 59.808 47.826 0.00 0.00 0.00 4.20
217 219 4.396478 CGCGATCAGAATCTCTAATCCCTA 59.604 45.833 0.00 0.00 0.00 3.53
218 220 5.106118 CGCGATCAGAATCTCTAATCCCTAA 60.106 44.000 0.00 0.00 0.00 2.69
220 222 6.329496 CGATCAGAATCTCTAATCCCTAAGC 58.671 44.000 0.00 0.00 0.00 3.09
222 224 7.524532 CGATCAGAATCTCTAATCCCTAAGCAA 60.525 40.741 0.00 0.00 0.00 3.91
223 225 7.060383 TCAGAATCTCTAATCCCTAAGCAAG 57.940 40.000 0.00 0.00 0.00 4.01
224 226 5.700373 CAGAATCTCTAATCCCTAAGCAAGC 59.300 44.000 0.00 0.00 0.00 4.01
225 227 5.367937 AGAATCTCTAATCCCTAAGCAAGCA 59.632 40.000 0.00 0.00 0.00 3.91
227 229 3.774766 TCTCTAATCCCTAAGCAAGCACA 59.225 43.478 0.00 0.00 0.00 4.57
229 231 1.839424 AATCCCTAAGCAAGCACACC 58.161 50.000 0.00 0.00 0.00 4.16
232 234 0.678048 CCCTAAGCAAGCACACCTCC 60.678 60.000 0.00 0.00 0.00 4.30
233 235 1.021390 CCTAAGCAAGCACACCTCCG 61.021 60.000 0.00 0.00 0.00 4.63
234 236 0.037326 CTAAGCAAGCACACCTCCGA 60.037 55.000 0.00 0.00 0.00 4.55
235 237 0.320421 TAAGCAAGCACACCTCCGAC 60.320 55.000 0.00 0.00 0.00 4.79
236 238 3.414700 GCAAGCACACCTCCGACG 61.415 66.667 0.00 0.00 0.00 5.12
238 240 3.616721 AAGCACACCTCCGACGCT 61.617 61.111 0.00 0.00 33.45 5.07
239 241 2.273179 AAGCACACCTCCGACGCTA 61.273 57.895 0.00 0.00 31.36 4.26
240 242 1.812686 AAGCACACCTCCGACGCTAA 61.813 55.000 0.00 0.00 31.36 3.09
241 243 2.092882 GCACACCTCCGACGCTAAC 61.093 63.158 0.00 0.00 0.00 2.34
242 244 1.287815 CACACCTCCGACGCTAACA 59.712 57.895 0.00 0.00 0.00 2.41
243 245 0.108804 CACACCTCCGACGCTAACAT 60.109 55.000 0.00 0.00 0.00 2.71
244 246 1.133598 CACACCTCCGACGCTAACATA 59.866 52.381 0.00 0.00 0.00 2.29
245 247 2.029623 ACACCTCCGACGCTAACATAT 58.970 47.619 0.00 0.00 0.00 1.78
247 249 1.612463 ACCTCCGACGCTAACATATCC 59.388 52.381 0.00 0.00 0.00 2.59
249 251 3.079578 CCTCCGACGCTAACATATCCTA 58.920 50.000 0.00 0.00 0.00 2.94
250 252 3.695060 CCTCCGACGCTAACATATCCTAT 59.305 47.826 0.00 0.00 0.00 2.57
251 253 4.158025 CCTCCGACGCTAACATATCCTATT 59.842 45.833 0.00 0.00 0.00 1.73
252 254 5.356190 CCTCCGACGCTAACATATCCTATTA 59.644 44.000 0.00 0.00 0.00 0.98
253 255 6.039493 CCTCCGACGCTAACATATCCTATTAT 59.961 42.308 0.00 0.00 0.00 1.28
254 256 7.228108 CCTCCGACGCTAACATATCCTATTATA 59.772 40.741 0.00 0.00 0.00 0.98
255 257 8.687292 TCCGACGCTAACATATCCTATTATAT 57.313 34.615 0.00 0.00 0.00 0.86
256 258 9.783081 TCCGACGCTAACATATCCTATTATATA 57.217 33.333 0.00 0.00 0.00 0.86
259 261 9.843334 GACGCTAACATATCCTATTATATAGCC 57.157 37.037 0.00 0.00 30.20 3.93
260 262 9.363401 ACGCTAACATATCCTATTATATAGCCA 57.637 33.333 0.00 0.00 30.20 4.75
321 323 9.657419 ATTGAAGAACTTTGTTGATTTCTTGTT 57.343 25.926 0.32 0.00 38.20 2.83
322 324 9.487790 TTGAAGAACTTTGTTGATTTCTTGTTT 57.512 25.926 0.32 0.00 38.20 2.83
345 347 2.080654 TTTGTCTTTGGTTCCAGGGG 57.919 50.000 0.00 0.00 0.00 4.79
346 348 0.930726 TTGTCTTTGGTTCCAGGGGT 59.069 50.000 0.00 0.00 0.00 4.95
348 350 0.771755 GTCTTTGGTTCCAGGGGTCT 59.228 55.000 0.00 0.00 0.00 3.85
352 354 3.073946 TCTTTGGTTCCAGGGGTCTTTAG 59.926 47.826 0.00 0.00 0.00 1.85
353 355 2.127651 TGGTTCCAGGGGTCTTTAGT 57.872 50.000 0.00 0.00 0.00 2.24
354 356 2.424793 TGGTTCCAGGGGTCTTTAGTT 58.575 47.619 0.00 0.00 0.00 2.24
355 357 2.374170 TGGTTCCAGGGGTCTTTAGTTC 59.626 50.000 0.00 0.00 0.00 3.01
359 361 1.838077 CCAGGGGTCTTTAGTTCCGAT 59.162 52.381 0.00 0.00 0.00 4.18
360 362 2.420129 CCAGGGGTCTTTAGTTCCGATG 60.420 54.545 0.00 0.00 0.00 3.84
361 363 2.500098 CAGGGGTCTTTAGTTCCGATGA 59.500 50.000 0.00 0.00 0.00 2.92
362 364 3.055385 CAGGGGTCTTTAGTTCCGATGAA 60.055 47.826 0.00 0.00 0.00 2.57
363 365 3.780850 AGGGGTCTTTAGTTCCGATGAAT 59.219 43.478 0.00 0.00 31.98 2.57
364 366 4.966805 AGGGGTCTTTAGTTCCGATGAATA 59.033 41.667 0.00 0.00 31.98 1.75
366 368 5.163332 GGGGTCTTTAGTTCCGATGAATACT 60.163 44.000 0.00 0.00 31.98 2.12
367 369 5.984323 GGGTCTTTAGTTCCGATGAATACTC 59.016 44.000 0.00 0.00 31.98 2.59
368 370 5.984323 GGTCTTTAGTTCCGATGAATACTCC 59.016 44.000 0.00 0.00 31.98 3.85
369 371 5.686397 GTCTTTAGTTCCGATGAATACTCCG 59.314 44.000 0.00 0.00 31.98 4.63
370 372 2.510768 AGTTCCGATGAATACTCCGC 57.489 50.000 0.00 0.00 31.98 5.54
371 373 2.032620 AGTTCCGATGAATACTCCGCT 58.967 47.619 0.00 0.00 31.98 5.52
372 374 2.431057 AGTTCCGATGAATACTCCGCTT 59.569 45.455 0.00 0.00 31.98 4.68
373 375 3.118738 AGTTCCGATGAATACTCCGCTTT 60.119 43.478 0.00 0.00 31.98 3.51
376 378 3.069586 TCCGATGAATACTCCGCTTTCAT 59.930 43.478 0.00 0.00 41.50 2.57
381 383 2.225068 ATACTCCGCTTTCATCACCG 57.775 50.000 0.00 0.00 0.00 4.94
383 385 0.670546 ACTCCGCTTTCATCACCGTG 60.671 55.000 0.00 0.00 0.00 4.94
384 386 0.670546 CTCCGCTTTCATCACCGTGT 60.671 55.000 0.00 0.00 0.00 4.49
385 387 0.669318 TCCGCTTTCATCACCGTGTC 60.669 55.000 0.00 0.00 0.00 3.67
386 388 0.670546 CCGCTTTCATCACCGTGTCT 60.671 55.000 0.00 0.00 0.00 3.41
389 391 1.195448 GCTTTCATCACCGTGTCTGTG 59.805 52.381 0.00 0.00 35.01 3.66
390 392 1.195448 CTTTCATCACCGTGTCTGTGC 59.805 52.381 0.00 0.00 33.71 4.57
392 394 2.048222 ATCACCGTGTCTGTGCCG 60.048 61.111 0.00 0.00 33.71 5.69
393 395 4.961511 TCACCGTGTCTGTGCCGC 62.962 66.667 0.00 0.00 33.71 6.53
395 397 4.314440 ACCGTGTCTGTGCCGCAT 62.314 61.111 0.00 0.00 0.00 4.73
396 398 3.049674 CCGTGTCTGTGCCGCATT 61.050 61.111 0.00 0.00 0.00 3.56
397 399 2.476051 CGTGTCTGTGCCGCATTC 59.524 61.111 0.00 0.00 0.00 2.67
398 400 2.476051 GTGTCTGTGCCGCATTCG 59.524 61.111 0.00 0.00 0.00 3.34
400 402 3.121030 GTCTGTGCCGCATTCGCT 61.121 61.111 0.00 0.00 35.30 4.93
401 403 2.815211 TCTGTGCCGCATTCGCTC 60.815 61.111 0.00 0.00 35.30 5.03
402 404 3.869272 CTGTGCCGCATTCGCTCC 61.869 66.667 0.00 0.00 35.30 4.70
403 405 4.695993 TGTGCCGCATTCGCTCCA 62.696 61.111 0.00 0.00 35.30 3.86
404 406 3.204827 GTGCCGCATTCGCTCCAT 61.205 61.111 0.00 0.00 35.30 3.41
405 407 2.438254 TGCCGCATTCGCTCCATT 60.438 55.556 0.00 0.00 35.30 3.16
407 409 1.139520 GCCGCATTCGCTCCATTTT 59.860 52.632 0.00 0.00 35.30 1.82
410 412 1.066002 CCGCATTCGCTCCATTTTCAT 59.934 47.619 0.00 0.00 35.30 2.57
411 413 2.480073 CCGCATTCGCTCCATTTTCATT 60.480 45.455 0.00 0.00 35.30 2.57
413 415 3.613737 CGCATTCGCTCCATTTTCATTTT 59.386 39.130 0.00 0.00 35.30 1.82
414 416 4.259530 CGCATTCGCTCCATTTTCATTTTC 60.260 41.667 0.00 0.00 35.30 2.29
415 417 4.259530 GCATTCGCTCCATTTTCATTTTCG 60.260 41.667 0.00 0.00 34.30 3.46
416 418 3.485947 TCGCTCCATTTTCATTTTCGG 57.514 42.857 0.00 0.00 0.00 4.30
417 419 2.817258 TCGCTCCATTTTCATTTTCGGT 59.183 40.909 0.00 0.00 0.00 4.69
418 420 4.004314 TCGCTCCATTTTCATTTTCGGTA 58.996 39.130 0.00 0.00 0.00 4.02
420 422 4.142687 CGCTCCATTTTCATTTTCGGTAGT 60.143 41.667 0.00 0.00 0.00 2.73
421 423 5.064198 CGCTCCATTTTCATTTTCGGTAGTA 59.936 40.000 0.00 0.00 0.00 1.82
422 424 6.238374 CGCTCCATTTTCATTTTCGGTAGTAT 60.238 38.462 0.00 0.00 0.00 2.12
423 425 7.480810 GCTCCATTTTCATTTTCGGTAGTATT 58.519 34.615 0.00 0.00 0.00 1.89
424 426 7.644157 GCTCCATTTTCATTTTCGGTAGTATTC 59.356 37.037 0.00 0.00 0.00 1.75
425 427 8.568676 TCCATTTTCATTTTCGGTAGTATTCA 57.431 30.769 0.00 0.00 0.00 2.57
427 429 9.801873 CCATTTTCATTTTCGGTAGTATTCATT 57.198 29.630 0.00 0.00 0.00 2.57
447 449 9.927668 ATTCATTTTCATATTTGTTTTCGAGGT 57.072 25.926 0.00 0.00 0.00 3.85
448 450 9.757227 TTCATTTTCATATTTGTTTTCGAGGTT 57.243 25.926 0.00 0.00 0.00 3.50
449 451 9.757227 TCATTTTCATATTTGTTTTCGAGGTTT 57.243 25.926 0.00 0.00 0.00 3.27
451 453 9.981114 ATTTTCATATTTGTTTTCGAGGTTTCT 57.019 25.926 0.00 0.00 0.00 2.52
454 456 8.610248 TCATATTTGTTTTCGAGGTTTCTGTA 57.390 30.769 0.00 0.00 0.00 2.74
455 457 9.226606 TCATATTTGTTTTCGAGGTTTCTGTAT 57.773 29.630 0.00 0.00 0.00 2.29
456 458 9.840427 CATATTTGTTTTCGAGGTTTCTGTATT 57.160 29.630 0.00 0.00 0.00 1.89
458 460 5.585500 TGTTTTCGAGGTTTCTGTATTCG 57.415 39.130 0.00 0.00 0.00 3.34
459 461 5.051816 TGTTTTCGAGGTTTCTGTATTCGT 58.948 37.500 0.00 0.00 33.35 3.85
461 463 6.037391 TGTTTTCGAGGTTTCTGTATTCGTTT 59.963 34.615 0.00 0.00 33.35 3.60
462 464 5.834239 TTCGAGGTTTCTGTATTCGTTTC 57.166 39.130 0.00 0.00 33.35 2.78
463 465 4.240096 TCGAGGTTTCTGTATTCGTTTCC 58.760 43.478 0.00 0.00 33.35 3.13
464 466 3.060363 CGAGGTTTCTGTATTCGTTTCCG 59.940 47.826 0.00 0.00 0.00 4.30
465 467 2.740447 AGGTTTCTGTATTCGTTTCCGC 59.260 45.455 0.00 0.00 0.00 5.54
466 468 2.740447 GGTTTCTGTATTCGTTTCCGCT 59.260 45.455 0.00 0.00 0.00 5.52
467 469 3.187842 GGTTTCTGTATTCGTTTCCGCTT 59.812 43.478 0.00 0.00 0.00 4.68
468 470 4.392216 GTTTCTGTATTCGTTTCCGCTTC 58.608 43.478 0.00 0.00 0.00 3.86
469 471 2.613691 TCTGTATTCGTTTCCGCTTCC 58.386 47.619 0.00 0.00 0.00 3.46
470 472 2.028839 TCTGTATTCGTTTCCGCTTCCA 60.029 45.455 0.00 0.00 0.00 3.53
472 474 4.116961 CTGTATTCGTTTCCGCTTCCATA 58.883 43.478 0.00 0.00 0.00 2.74
473 475 4.505808 TGTATTCGTTTCCGCTTCCATAA 58.494 39.130 0.00 0.00 0.00 1.90
474 476 4.936411 TGTATTCGTTTCCGCTTCCATAAA 59.064 37.500 0.00 0.00 0.00 1.40
475 477 5.411977 TGTATTCGTTTCCGCTTCCATAAAA 59.588 36.000 0.00 0.00 0.00 1.52
476 478 4.832590 TTCGTTTCCGCTTCCATAAAAA 57.167 36.364 0.00 0.00 0.00 1.94
502 504 8.996024 AATATAAAAACAAATGTGGTAGCACC 57.004 30.769 21.65 5.20 39.22 5.01
503 505 3.744238 AAAACAAATGTGGTAGCACCC 57.256 42.857 21.65 0.00 37.50 4.61
504 506 2.373335 AACAAATGTGGTAGCACCCA 57.627 45.000 21.65 5.13 37.50 4.51
505 507 1.909700 ACAAATGTGGTAGCACCCAG 58.090 50.000 21.65 11.52 37.50 4.45
506 508 1.144913 ACAAATGTGGTAGCACCCAGT 59.855 47.619 21.65 12.11 37.50 4.00
507 509 2.238521 CAAATGTGGTAGCACCCAGTT 58.761 47.619 21.65 7.43 37.50 3.16
508 510 3.181438 ACAAATGTGGTAGCACCCAGTTA 60.181 43.478 21.65 2.78 37.50 2.24
509 511 2.781681 ATGTGGTAGCACCCAGTTAC 57.218 50.000 21.65 0.00 37.50 2.50
510 512 0.319083 TGTGGTAGCACCCAGTTACG 59.681 55.000 21.65 0.00 37.50 3.18
511 513 0.390735 GTGGTAGCACCCAGTTACGG 60.391 60.000 14.20 0.00 37.50 4.02
512 514 0.832983 TGGTAGCACCCAGTTACGGT 60.833 55.000 0.00 0.00 37.50 4.83
513 515 0.108472 GGTAGCACCCAGTTACGGTC 60.108 60.000 0.00 0.00 35.03 4.79
514 516 0.457337 GTAGCACCCAGTTACGGTCG 60.457 60.000 0.00 0.00 0.00 4.79
515 517 0.895100 TAGCACCCAGTTACGGTCGT 60.895 55.000 0.69 0.69 0.00 4.34
516 518 1.301165 GCACCCAGTTACGGTCGTT 60.301 57.895 0.16 0.00 0.00 3.85
517 519 0.881600 GCACCCAGTTACGGTCGTTT 60.882 55.000 0.16 0.00 0.00 3.60
518 520 1.142474 CACCCAGTTACGGTCGTTTC 58.858 55.000 0.16 0.00 0.00 2.78
519 521 0.033920 ACCCAGTTACGGTCGTTTCC 59.966 55.000 0.16 0.00 0.00 3.13
526 528 2.125673 CGGTCGTTTCCGCTCCAT 60.126 61.111 4.00 0.00 43.96 3.41
527 529 1.740296 CGGTCGTTTCCGCTCCATT 60.740 57.895 4.00 0.00 43.96 3.16
528 530 1.296056 CGGTCGTTTCCGCTCCATTT 61.296 55.000 4.00 0.00 43.96 2.32
529 531 0.879090 GGTCGTTTCCGCTCCATTTT 59.121 50.000 0.00 0.00 0.00 1.82
530 532 1.135774 GGTCGTTTCCGCTCCATTTTC 60.136 52.381 0.00 0.00 0.00 2.29
531 533 1.533731 GTCGTTTCCGCTCCATTTTCA 59.466 47.619 0.00 0.00 0.00 2.69
532 534 2.161609 GTCGTTTCCGCTCCATTTTCAT 59.838 45.455 0.00 0.00 0.00 2.57
533 535 3.372822 GTCGTTTCCGCTCCATTTTCATA 59.627 43.478 0.00 0.00 0.00 2.15
534 536 3.372822 TCGTTTCCGCTCCATTTTCATAC 59.627 43.478 0.00 0.00 0.00 2.39
535 537 3.486875 CGTTTCCGCTCCATTTTCATACC 60.487 47.826 0.00 0.00 0.00 2.73
536 538 3.644966 TTCCGCTCCATTTTCATACCT 57.355 42.857 0.00 0.00 0.00 3.08
537 539 4.764050 TTCCGCTCCATTTTCATACCTA 57.236 40.909 0.00 0.00 0.00 3.08
538 540 4.336889 TCCGCTCCATTTTCATACCTAG 57.663 45.455 0.00 0.00 0.00 3.02
539 541 2.808543 CCGCTCCATTTTCATACCTAGC 59.191 50.000 0.00 0.00 0.00 3.42
540 542 3.495100 CCGCTCCATTTTCATACCTAGCT 60.495 47.826 0.00 0.00 0.00 3.32
541 543 3.496130 CGCTCCATTTTCATACCTAGCTG 59.504 47.826 0.00 0.00 0.00 4.24
542 544 4.455606 GCTCCATTTTCATACCTAGCTGT 58.544 43.478 0.00 0.00 0.00 4.40
543 545 4.274459 GCTCCATTTTCATACCTAGCTGTG 59.726 45.833 0.00 0.00 0.00 3.66
544 546 5.674525 CTCCATTTTCATACCTAGCTGTGA 58.325 41.667 0.00 0.00 0.00 3.58
545 547 5.428253 TCCATTTTCATACCTAGCTGTGAC 58.572 41.667 0.00 0.00 0.00 3.67
546 548 5.189736 TCCATTTTCATACCTAGCTGTGACT 59.810 40.000 0.00 0.00 0.00 3.41
547 549 5.525378 CCATTTTCATACCTAGCTGTGACTC 59.475 44.000 0.00 0.00 0.00 3.36
551 553 5.738619 TCATACCTAGCTGTGACTCAAAA 57.261 39.130 0.00 0.00 0.00 2.44
611 613 4.214383 CGAGCATCTTGCCGCGTG 62.214 66.667 4.92 0.00 46.52 5.34
612 614 3.869272 GAGCATCTTGCCGCGTGG 61.869 66.667 11.67 11.67 46.52 4.94
631 633 4.547532 GTGGCTTCGACGTAATCTCATAT 58.452 43.478 0.00 0.00 0.00 1.78
633 635 4.277423 TGGCTTCGACGTAATCTCATATCA 59.723 41.667 0.00 0.00 0.00 2.15
838 1211 0.531657 TTACGACCCGGTGTATGTGG 59.468 55.000 0.00 0.00 0.00 4.17
844 1217 2.038269 CCGGTGTATGTGGGTGTGC 61.038 63.158 0.00 0.00 0.00 4.57
846 1219 1.019278 CGGTGTATGTGGGTGTGCTC 61.019 60.000 0.00 0.00 0.00 4.26
850 1223 1.003118 TGTATGTGGGTGTGCTCCTTC 59.997 52.381 0.00 0.00 0.00 3.46
917 1290 0.726827 CGGTATGCACACACATGACC 59.273 55.000 0.00 0.00 0.00 4.02
959 1340 6.636705 ACACTGCTGTAAATAATAACTCGGA 58.363 36.000 0.00 0.00 0.00 4.55
1111 1494 3.493303 GGGGCCATGAGGAGACCC 61.493 72.222 4.39 0.00 40.05 4.46
1286 1676 2.264480 CGCCGGTCTGTGATTGGA 59.736 61.111 1.90 0.00 0.00 3.53
1410 1800 1.271054 GCTTGCCTCTCTGAACCTTCA 60.271 52.381 0.00 0.00 35.57 3.02
1472 1862 1.079503 GTTGCGCTCCCTCAAAGTAG 58.920 55.000 9.73 0.00 0.00 2.57
2917 3923 6.483307 TGAATGTCTCGAACAATCTTTTGTCT 59.517 34.615 13.32 0.00 45.30 3.41
3040 4046 0.739813 ATACTTCGCTTGCACCGGAC 60.740 55.000 9.46 0.00 0.00 4.79
3173 4179 5.588648 AGATGTTGTTTTCTTTCCTTCGTGA 59.411 36.000 0.00 0.00 0.00 4.35
3514 4640 4.295119 AGGCTCGCCGTCGTTGTT 62.295 61.111 1.69 0.00 41.95 2.83
3539 4665 1.593209 GTGAACGTCTCCAACCGCA 60.593 57.895 0.00 0.00 0.00 5.69
3557 4683 4.436998 GCTCCGTCAGGTCCACCG 62.437 72.222 0.00 0.00 42.08 4.94
3625 4775 0.738412 CCGATGTTAACCGCGACCTT 60.738 55.000 8.23 0.00 0.00 3.50
3668 4818 1.656652 CATTGCTACCGTTCCCTCTG 58.343 55.000 0.00 0.00 0.00 3.35
3669 4819 1.066143 CATTGCTACCGTTCCCTCTGT 60.066 52.381 0.00 0.00 0.00 3.41
3680 4830 1.053835 TCCCTCTGTGTGCAGGTGAA 61.054 55.000 0.00 0.00 42.78 3.18
3727 4883 1.687612 CCACCCTGAGCATTCCTGT 59.312 57.895 0.00 0.00 0.00 4.00
3782 4955 2.185867 TGGCGACGGCACTTATCC 59.814 61.111 21.29 0.00 42.47 2.59
3866 5039 2.293318 CCACTGCAGGCACTCCCTA 61.293 63.158 19.93 0.00 44.09 3.53
3900 5073 1.459158 ATCTGCATCTCCTCCGGCT 60.459 57.895 0.00 0.00 0.00 5.52
3983 5371 3.179265 GACGTCGCCCACATCACG 61.179 66.667 0.00 0.00 38.24 4.35
4023 5423 3.485431 CGCTGCTCCTCTTGTGCG 61.485 66.667 0.00 0.00 36.24 5.34
4062 5569 4.626081 GCTCCAGCACCACCACGT 62.626 66.667 0.00 0.00 41.59 4.49
4064 5571 3.157949 TCCAGCACCACCACGTCA 61.158 61.111 0.00 0.00 0.00 4.35
4177 5691 4.385405 GGAGCAGCTGGTCACGCT 62.385 66.667 38.37 19.83 43.82 5.07
4193 5707 1.291184 CGCTGTCGTTCATCAGGCAA 61.291 55.000 0.00 0.00 32.94 4.52
4198 5712 1.812571 GTCGTTCATCAGGCAATTGGT 59.187 47.619 7.72 0.00 0.00 3.67
4274 5800 0.544357 ACTTGATGTCCCGGTGGAGA 60.544 55.000 0.00 0.00 42.85 3.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 2.030562 ACGCCTGTTCCACCGAAG 59.969 61.111 0.00 0.00 0.00 3.79
12 13 3.818121 TTCCACGCCTGTTCCACCG 62.818 63.158 0.00 0.00 0.00 4.94
14 15 1.816074 TATTTCCACGCCTGTTCCAC 58.184 50.000 0.00 0.00 0.00 4.02
17 18 5.347635 GGAAATTTTATTTCCACGCCTGTTC 59.652 40.000 20.78 0.00 45.50 3.18
32 33 9.015367 TCCATATCAACGAAACTGGAAATTTTA 57.985 29.630 0.00 0.00 30.15 1.52
41 42 7.647715 ACAAAAAGTTCCATATCAACGAAACTG 59.352 33.333 0.00 0.00 0.00 3.16
42 43 7.712797 ACAAAAAGTTCCATATCAACGAAACT 58.287 30.769 0.00 0.00 0.00 2.66
64 66 4.272991 GCCATTTGCTCATGTTCAAAACAA 59.727 37.500 15.22 0.52 40.20 2.83
87 89 5.234116 GTGTGTTTGTTGGGCTGAAAAATAG 59.766 40.000 0.00 0.00 0.00 1.73
89 91 3.938334 GTGTGTTTGTTGGGCTGAAAAAT 59.062 39.130 0.00 0.00 0.00 1.82
92 94 1.895798 TGTGTGTTTGTTGGGCTGAAA 59.104 42.857 0.00 0.00 0.00 2.69
93 95 1.550327 TGTGTGTTTGTTGGGCTGAA 58.450 45.000 0.00 0.00 0.00 3.02
94 96 1.550327 TTGTGTGTTTGTTGGGCTGA 58.450 45.000 0.00 0.00 0.00 4.26
95 97 2.600470 ATTGTGTGTTTGTTGGGCTG 57.400 45.000 0.00 0.00 0.00 4.85
96 98 3.069443 CCTAATTGTGTGTTTGTTGGGCT 59.931 43.478 0.00 0.00 0.00 5.19
97 99 3.181470 ACCTAATTGTGTGTTTGTTGGGC 60.181 43.478 0.00 0.00 0.00 5.36
98 100 4.098654 TGACCTAATTGTGTGTTTGTTGGG 59.901 41.667 0.00 0.00 0.00 4.12
100 102 7.378461 GTGTATGACCTAATTGTGTGTTTGTTG 59.622 37.037 0.00 0.00 0.00 3.33
103 105 6.855914 GTGTGTATGACCTAATTGTGTGTTTG 59.144 38.462 0.00 0.00 0.00 2.93
105 107 5.178623 CGTGTGTATGACCTAATTGTGTGTT 59.821 40.000 0.00 0.00 0.00 3.32
106 108 4.688879 CGTGTGTATGACCTAATTGTGTGT 59.311 41.667 0.00 0.00 0.00 3.72
107 109 4.926832 TCGTGTGTATGACCTAATTGTGTG 59.073 41.667 0.00 0.00 0.00 3.82
109 111 6.474819 TTTCGTGTGTATGACCTAATTGTG 57.525 37.500 0.00 0.00 0.00 3.33
110 112 6.708949 ACTTTTCGTGTGTATGACCTAATTGT 59.291 34.615 0.00 0.00 0.00 2.71
111 113 7.129109 ACTTTTCGTGTGTATGACCTAATTG 57.871 36.000 0.00 0.00 0.00 2.32
113 115 7.833786 TCTACTTTTCGTGTGTATGACCTAAT 58.166 34.615 0.00 0.00 0.00 1.73
114 116 7.218228 TCTACTTTTCGTGTGTATGACCTAA 57.782 36.000 0.00 0.00 0.00 2.69
115 117 6.822667 TCTACTTTTCGTGTGTATGACCTA 57.177 37.500 0.00 0.00 0.00 3.08
116 118 5.717078 TCTACTTTTCGTGTGTATGACCT 57.283 39.130 0.00 0.00 0.00 3.85
118 120 7.411588 GGTCATTCTACTTTTCGTGTGTATGAC 60.412 40.741 0.00 0.00 37.41 3.06
119 121 6.588756 GGTCATTCTACTTTTCGTGTGTATGA 59.411 38.462 0.00 0.00 0.00 2.15
120 122 6.183360 GGGTCATTCTACTTTTCGTGTGTATG 60.183 42.308 0.00 0.00 0.00 2.39
121 123 5.873164 GGGTCATTCTACTTTTCGTGTGTAT 59.127 40.000 0.00 0.00 0.00 2.29
122 124 5.221481 TGGGTCATTCTACTTTTCGTGTGTA 60.221 40.000 0.00 0.00 0.00 2.90
123 125 4.062991 GGGTCATTCTACTTTTCGTGTGT 58.937 43.478 0.00 0.00 0.00 3.72
127 129 4.884668 TCTGGGTCATTCTACTTTTCGT 57.115 40.909 0.00 0.00 0.00 3.85
128 130 5.463724 GCTATCTGGGTCATTCTACTTTTCG 59.536 44.000 0.00 0.00 0.00 3.46
129 131 6.587273 AGCTATCTGGGTCATTCTACTTTTC 58.413 40.000 0.00 0.00 0.00 2.29
130 132 6.156949 TGAGCTATCTGGGTCATTCTACTTTT 59.843 38.462 0.00 0.00 38.55 2.27
131 133 5.663106 TGAGCTATCTGGGTCATTCTACTTT 59.337 40.000 0.00 0.00 38.55 2.66
132 134 5.211973 TGAGCTATCTGGGTCATTCTACTT 58.788 41.667 0.00 0.00 38.55 2.24
134 136 5.069781 AGTTGAGCTATCTGGGTCATTCTAC 59.930 44.000 0.00 0.00 42.17 2.59
135 137 5.211973 AGTTGAGCTATCTGGGTCATTCTA 58.788 41.667 0.00 0.00 42.17 2.10
136 138 4.036518 AGTTGAGCTATCTGGGTCATTCT 58.963 43.478 0.00 0.00 42.17 2.40
137 139 4.414337 AGTTGAGCTATCTGGGTCATTC 57.586 45.455 0.00 0.00 42.17 2.67
138 140 4.681781 CGAAGTTGAGCTATCTGGGTCATT 60.682 45.833 0.00 0.00 42.17 2.57
139 141 3.181471 CGAAGTTGAGCTATCTGGGTCAT 60.181 47.826 0.00 0.00 42.17 3.06
140 142 2.166459 CGAAGTTGAGCTATCTGGGTCA 59.834 50.000 0.00 0.00 41.16 4.02
141 143 2.427453 TCGAAGTTGAGCTATCTGGGTC 59.573 50.000 0.00 0.00 0.00 4.46
142 144 2.457598 TCGAAGTTGAGCTATCTGGGT 58.542 47.619 0.00 0.00 0.00 4.51
143 145 3.742433 ATCGAAGTTGAGCTATCTGGG 57.258 47.619 0.00 0.00 0.00 4.45
145 147 6.269315 AGTACAATCGAAGTTGAGCTATCTG 58.731 40.000 5.78 0.00 33.37 2.90
146 148 6.458232 AGTACAATCGAAGTTGAGCTATCT 57.542 37.500 5.78 0.00 33.37 1.98
147 149 7.419204 AGTAGTACAATCGAAGTTGAGCTATC 58.581 38.462 5.78 3.79 33.37 2.08
148 150 7.336161 AGTAGTACAATCGAAGTTGAGCTAT 57.664 36.000 5.78 0.00 33.37 2.97
149 151 6.754702 AGTAGTACAATCGAAGTTGAGCTA 57.245 37.500 5.78 4.89 33.37 3.32
151 153 6.553524 AGTAGTAGTACAATCGAAGTTGAGC 58.446 40.000 10.33 0.00 33.37 4.26
153 155 8.552083 TGTAGTAGTAGTACAATCGAAGTTGA 57.448 34.615 14.27 0.00 31.55 3.18
156 158 8.728337 TGATGTAGTAGTAGTACAATCGAAGT 57.272 34.615 19.29 3.88 37.53 3.01
158 160 8.127327 GCTTGATGTAGTAGTAGTACAATCGAA 58.873 37.037 19.29 10.10 37.53 3.71
159 161 7.281549 TGCTTGATGTAGTAGTAGTACAATCGA 59.718 37.037 19.29 15.06 37.53 3.59
160 162 7.415229 TGCTTGATGTAGTAGTAGTACAATCG 58.585 38.462 19.29 10.67 37.53 3.34
162 164 8.144478 CCATGCTTGATGTAGTAGTAGTACAAT 58.856 37.037 19.29 9.83 37.53 2.71
165 167 5.921408 GCCATGCTTGATGTAGTAGTAGTAC 59.079 44.000 8.04 8.04 0.00 2.73
166 168 5.596772 TGCCATGCTTGATGTAGTAGTAGTA 59.403 40.000 0.22 0.00 0.00 1.82
167 169 4.405680 TGCCATGCTTGATGTAGTAGTAGT 59.594 41.667 0.22 0.00 0.00 2.73
168 170 4.948847 TGCCATGCTTGATGTAGTAGTAG 58.051 43.478 0.22 0.00 0.00 2.57
170 172 3.912496 TGCCATGCTTGATGTAGTAGT 57.088 42.857 0.22 0.00 0.00 2.73
176 178 0.241749 CGTGTTGCCATGCTTGATGT 59.758 50.000 0.22 0.00 0.00 3.06
177 179 3.024423 CGTGTTGCCATGCTTGATG 57.976 52.632 0.22 0.00 0.00 3.07
185 187 0.673333 TTCTGATCGCGTGTTGCCAT 60.673 50.000 5.77 0.00 42.08 4.40
186 188 0.673333 ATTCTGATCGCGTGTTGCCA 60.673 50.000 5.77 0.00 42.08 4.92
187 189 0.026803 GATTCTGATCGCGTGTTGCC 59.973 55.000 5.77 0.00 42.08 4.52
188 190 1.002366 AGATTCTGATCGCGTGTTGC 58.998 50.000 5.77 0.00 37.37 4.17
189 191 2.534298 AGAGATTCTGATCGCGTGTTG 58.466 47.619 5.77 0.00 37.20 3.33
191 193 4.541779 GATTAGAGATTCTGATCGCGTGT 58.458 43.478 5.77 0.00 37.20 4.49
193 195 3.057174 GGGATTAGAGATTCTGATCGCGT 60.057 47.826 5.77 0.00 40.59 6.01
195 197 4.799564 AGGGATTAGAGATTCTGATCGC 57.200 45.455 15.51 15.51 46.04 4.58
196 198 6.071672 TGCTTAGGGATTAGAGATTCTGATCG 60.072 42.308 0.00 0.00 39.55 3.69
197 199 7.238486 TGCTTAGGGATTAGAGATTCTGATC 57.762 40.000 0.00 3.08 38.38 2.92
198 200 7.623999 TTGCTTAGGGATTAGAGATTCTGAT 57.376 36.000 0.00 0.00 0.00 2.90
199 201 6.463614 GCTTGCTTAGGGATTAGAGATTCTGA 60.464 42.308 0.00 0.00 0.00 3.27
201 203 5.367937 TGCTTGCTTAGGGATTAGAGATTCT 59.632 40.000 0.00 0.00 0.00 2.40
202 204 5.468409 GTGCTTGCTTAGGGATTAGAGATTC 59.532 44.000 0.00 0.00 0.00 2.52
203 205 5.104360 TGTGCTTGCTTAGGGATTAGAGATT 60.104 40.000 0.00 0.00 0.00 2.40
204 206 4.410228 TGTGCTTGCTTAGGGATTAGAGAT 59.590 41.667 0.00 0.00 0.00 2.75
205 207 3.774766 TGTGCTTGCTTAGGGATTAGAGA 59.225 43.478 0.00 0.00 0.00 3.10
206 208 3.873952 GTGTGCTTGCTTAGGGATTAGAG 59.126 47.826 0.00 0.00 0.00 2.43
210 212 1.355720 AGGTGTGCTTGCTTAGGGATT 59.644 47.619 0.00 0.00 0.00 3.01
211 213 0.995024 AGGTGTGCTTGCTTAGGGAT 59.005 50.000 0.00 0.00 0.00 3.85
213 215 0.678048 GGAGGTGTGCTTGCTTAGGG 60.678 60.000 0.00 0.00 0.00 3.53
215 217 0.037326 TCGGAGGTGTGCTTGCTTAG 60.037 55.000 0.00 0.00 0.00 2.18
216 218 0.320421 GTCGGAGGTGTGCTTGCTTA 60.320 55.000 0.00 0.00 0.00 3.09
217 219 1.598130 GTCGGAGGTGTGCTTGCTT 60.598 57.895 0.00 0.00 0.00 3.91
218 220 2.031163 GTCGGAGGTGTGCTTGCT 59.969 61.111 0.00 0.00 0.00 3.91
220 222 2.486636 TAGCGTCGGAGGTGTGCTTG 62.487 60.000 0.00 0.00 37.12 4.01
222 224 2.273179 TTAGCGTCGGAGGTGTGCT 61.273 57.895 0.00 0.00 39.59 4.40
223 225 2.092882 GTTAGCGTCGGAGGTGTGC 61.093 63.158 0.00 0.00 0.00 4.57
224 226 0.108804 ATGTTAGCGTCGGAGGTGTG 60.109 55.000 0.00 0.00 0.00 3.82
225 227 1.466856 TATGTTAGCGTCGGAGGTGT 58.533 50.000 0.00 0.00 0.00 4.16
227 229 1.612463 GGATATGTTAGCGTCGGAGGT 59.388 52.381 0.00 0.00 0.00 3.85
229 231 4.966965 ATAGGATATGTTAGCGTCGGAG 57.033 45.455 0.00 0.00 0.00 4.63
232 234 9.544314 GCTATATAATAGGATATGTTAGCGTCG 57.456 37.037 0.00 0.00 0.00 5.12
233 235 9.843334 GGCTATATAATAGGATATGTTAGCGTC 57.157 37.037 0.00 0.00 33.53 5.19
234 236 9.363401 TGGCTATATAATAGGATATGTTAGCGT 57.637 33.333 0.00 0.00 33.53 5.07
294 296 9.657419 ACAAGAAATCAACAAAGTTCTTCAATT 57.343 25.926 0.00 0.00 38.05 2.32
295 297 9.657419 AACAAGAAATCAACAAAGTTCTTCAAT 57.343 25.926 0.00 0.00 38.05 2.57
296 298 9.487790 AAACAAGAAATCAACAAAGTTCTTCAA 57.512 25.926 0.00 0.00 38.05 2.69
297 299 9.487790 AAAACAAGAAATCAACAAAGTTCTTCA 57.512 25.926 0.00 0.00 38.05 3.02
324 326 2.769095 CCCCTGGAACCAAAGACAAAAA 59.231 45.455 0.00 0.00 0.00 1.94
325 327 2.292587 ACCCCTGGAACCAAAGACAAAA 60.293 45.455 0.00 0.00 0.00 2.44
327 329 0.930726 ACCCCTGGAACCAAAGACAA 59.069 50.000 0.00 0.00 0.00 3.18
328 330 0.476771 GACCCCTGGAACCAAAGACA 59.523 55.000 0.00 0.00 0.00 3.41
329 331 0.771755 AGACCCCTGGAACCAAAGAC 59.228 55.000 0.00 0.00 0.00 3.01
330 332 1.529744 AAGACCCCTGGAACCAAAGA 58.470 50.000 0.00 0.00 0.00 2.52
331 333 2.381752 AAAGACCCCTGGAACCAAAG 57.618 50.000 0.00 0.00 0.00 2.77
333 335 2.424793 ACTAAAGACCCCTGGAACCAA 58.575 47.619 0.00 0.00 0.00 3.67
334 336 2.127651 ACTAAAGACCCCTGGAACCA 57.872 50.000 0.00 0.00 0.00 3.67
335 337 2.290768 GGAACTAAAGACCCCTGGAACC 60.291 54.545 0.00 0.00 0.00 3.62
336 338 2.614734 CGGAACTAAAGACCCCTGGAAC 60.615 54.545 0.00 0.00 0.00 3.62
337 339 1.626825 CGGAACTAAAGACCCCTGGAA 59.373 52.381 0.00 0.00 0.00 3.53
338 340 1.203212 TCGGAACTAAAGACCCCTGGA 60.203 52.381 0.00 0.00 0.00 3.86
340 342 2.500098 TCATCGGAACTAAAGACCCCTG 59.500 50.000 0.00 0.00 0.00 4.45
341 343 2.829023 TCATCGGAACTAAAGACCCCT 58.171 47.619 0.00 0.00 0.00 4.79
343 345 5.915175 AGTATTCATCGGAACTAAAGACCC 58.085 41.667 0.00 0.00 35.46 4.46
344 346 5.984323 GGAGTATTCATCGGAACTAAAGACC 59.016 44.000 0.00 0.00 35.46 3.85
345 347 5.686397 CGGAGTATTCATCGGAACTAAAGAC 59.314 44.000 0.00 0.00 35.46 3.01
346 348 5.735354 GCGGAGTATTCATCGGAACTAAAGA 60.735 44.000 0.00 0.00 35.46 2.52
348 350 4.098960 AGCGGAGTATTCATCGGAACTAAA 59.901 41.667 0.00 0.00 35.46 1.85
352 354 2.510768 AGCGGAGTATTCATCGGAAC 57.489 50.000 0.00 0.00 35.46 3.62
353 355 3.118920 TGAAAGCGGAGTATTCATCGGAA 60.119 43.478 0.00 0.00 37.45 4.30
354 356 2.429250 TGAAAGCGGAGTATTCATCGGA 59.571 45.455 0.00 0.00 31.48 4.55
355 357 2.821546 TGAAAGCGGAGTATTCATCGG 58.178 47.619 0.00 0.00 31.48 4.18
359 361 3.531538 GGTGATGAAAGCGGAGTATTCA 58.468 45.455 0.00 0.00 38.23 2.57
360 362 2.540101 CGGTGATGAAAGCGGAGTATTC 59.460 50.000 0.00 0.00 37.40 1.75
361 363 2.093658 ACGGTGATGAAAGCGGAGTATT 60.094 45.455 0.72 0.00 45.01 1.89
362 364 1.480954 ACGGTGATGAAAGCGGAGTAT 59.519 47.619 0.72 0.00 45.01 2.12
363 365 0.892755 ACGGTGATGAAAGCGGAGTA 59.107 50.000 0.72 0.00 45.01 2.59
364 366 0.670546 CACGGTGATGAAAGCGGAGT 60.671 55.000 0.74 0.00 45.01 3.85
366 368 0.669318 GACACGGTGATGAAAGCGGA 60.669 55.000 16.29 0.00 45.01 5.54
367 369 0.670546 AGACACGGTGATGAAAGCGG 60.671 55.000 16.29 0.00 45.01 5.52
368 370 0.439985 CAGACACGGTGATGAAAGCG 59.560 55.000 16.29 0.00 46.11 4.68
369 371 1.195448 CACAGACACGGTGATGAAAGC 59.805 52.381 16.29 0.00 38.54 3.51
370 372 1.195448 GCACAGACACGGTGATGAAAG 59.805 52.381 16.29 9.45 38.54 2.62
371 373 1.225855 GCACAGACACGGTGATGAAA 58.774 50.000 16.29 0.00 38.54 2.69
372 374 0.602638 GGCACAGACACGGTGATGAA 60.603 55.000 16.29 0.00 38.54 2.57
373 375 1.005037 GGCACAGACACGGTGATGA 60.005 57.895 16.29 0.00 38.54 2.92
376 378 4.961511 GCGGCACAGACACGGTGA 62.962 66.667 16.29 0.00 38.54 4.02
378 380 3.825160 AATGCGGCACAGACACGGT 62.825 57.895 4.03 0.00 0.00 4.83
381 383 2.476051 CGAATGCGGCACAGACAC 59.524 61.111 4.03 0.00 0.00 3.67
392 394 4.259530 CGAAAATGAAAATGGAGCGAATGC 60.260 41.667 0.00 0.00 43.24 3.56
393 395 4.266029 CCGAAAATGAAAATGGAGCGAATG 59.734 41.667 0.00 0.00 0.00 2.67
394 396 4.082245 ACCGAAAATGAAAATGGAGCGAAT 60.082 37.500 0.00 0.00 0.00 3.34
395 397 3.254657 ACCGAAAATGAAAATGGAGCGAA 59.745 39.130 0.00 0.00 0.00 4.70
396 398 2.817258 ACCGAAAATGAAAATGGAGCGA 59.183 40.909 0.00 0.00 0.00 4.93
397 399 3.216147 ACCGAAAATGAAAATGGAGCG 57.784 42.857 0.00 0.00 0.00 5.03
398 400 5.310720 ACTACCGAAAATGAAAATGGAGC 57.689 39.130 0.00 0.00 0.00 4.70
400 402 8.568676 TGAATACTACCGAAAATGAAAATGGA 57.431 30.769 0.00 0.00 0.00 3.41
401 403 9.801873 AATGAATACTACCGAAAATGAAAATGG 57.198 29.630 0.00 0.00 0.00 3.16
421 423 9.927668 ACCTCGAAAACAAATATGAAAATGAAT 57.072 25.926 0.00 0.00 0.00 2.57
422 424 9.757227 AACCTCGAAAACAAATATGAAAATGAA 57.243 25.926 0.00 0.00 0.00 2.57
423 425 9.757227 AAACCTCGAAAACAAATATGAAAATGA 57.243 25.926 0.00 0.00 0.00 2.57
425 427 9.981114 AGAAACCTCGAAAACAAATATGAAAAT 57.019 25.926 0.00 0.00 0.00 1.82
427 429 8.410141 ACAGAAACCTCGAAAACAAATATGAAA 58.590 29.630 0.00 0.00 0.00 2.69
428 430 7.936584 ACAGAAACCTCGAAAACAAATATGAA 58.063 30.769 0.00 0.00 0.00 2.57
429 431 7.504924 ACAGAAACCTCGAAAACAAATATGA 57.495 32.000 0.00 0.00 0.00 2.15
430 432 9.840427 AATACAGAAACCTCGAAAACAAATATG 57.160 29.630 0.00 0.00 0.00 1.78
433 435 7.075741 CGAATACAGAAACCTCGAAAACAAAT 58.924 34.615 0.00 0.00 0.00 2.32
434 436 6.037391 ACGAATACAGAAACCTCGAAAACAAA 59.963 34.615 0.00 0.00 33.81 2.83
435 437 5.524646 ACGAATACAGAAACCTCGAAAACAA 59.475 36.000 0.00 0.00 33.81 2.83
436 438 5.051816 ACGAATACAGAAACCTCGAAAACA 58.948 37.500 0.00 0.00 33.81 2.83
438 440 6.293027 GGAAACGAATACAGAAACCTCGAAAA 60.293 38.462 0.00 0.00 33.81 2.29
439 441 5.178067 GGAAACGAATACAGAAACCTCGAAA 59.822 40.000 0.00 0.00 33.81 3.46
440 442 4.687483 GGAAACGAATACAGAAACCTCGAA 59.313 41.667 0.00 0.00 33.81 3.71
476 478 9.430623 GGTGCTACCACATTTGTTTTTATATTT 57.569 29.630 1.01 0.00 43.88 1.40
477 479 8.038351 GGGTGCTACCACATTTGTTTTTATATT 58.962 33.333 7.49 0.00 43.88 1.28
478 480 7.179338 TGGGTGCTACCACATTTGTTTTTATAT 59.821 33.333 7.49 0.00 43.88 0.86
479 481 6.493802 TGGGTGCTACCACATTTGTTTTTATA 59.506 34.615 7.49 0.00 43.88 0.98
480 482 5.305644 TGGGTGCTACCACATTTGTTTTTAT 59.694 36.000 7.49 0.00 43.88 1.40
481 483 4.649674 TGGGTGCTACCACATTTGTTTTTA 59.350 37.500 7.49 0.00 43.88 1.52
482 484 3.452627 TGGGTGCTACCACATTTGTTTTT 59.547 39.130 7.49 0.00 43.88 1.94
485 487 2.238521 CTGGGTGCTACCACATTTGTT 58.761 47.619 7.49 0.00 43.88 2.83
486 488 1.144913 ACTGGGTGCTACCACATTTGT 59.855 47.619 7.49 0.00 43.88 2.83
487 489 1.909700 ACTGGGTGCTACCACATTTG 58.090 50.000 7.49 0.00 43.88 2.32
488 490 2.675658 AACTGGGTGCTACCACATTT 57.324 45.000 7.49 2.37 43.88 2.32
489 491 2.614481 CGTAACTGGGTGCTACCACATT 60.614 50.000 7.49 3.45 43.88 2.71
490 492 1.066430 CGTAACTGGGTGCTACCACAT 60.066 52.381 7.49 0.00 43.88 3.21
491 493 0.319083 CGTAACTGGGTGCTACCACA 59.681 55.000 7.49 3.17 43.88 4.17
492 494 0.390735 CCGTAACTGGGTGCTACCAC 60.391 60.000 7.49 0.00 41.02 4.16
494 496 0.108472 GACCGTAACTGGGTGCTACC 60.108 60.000 0.00 0.00 38.07 3.18
495 497 0.457337 CGACCGTAACTGGGTGCTAC 60.457 60.000 0.00 0.00 38.07 3.58
496 498 0.895100 ACGACCGTAACTGGGTGCTA 60.895 55.000 0.00 0.00 38.07 3.49
497 499 1.751349 AACGACCGTAACTGGGTGCT 61.751 55.000 0.00 0.00 38.07 4.40
500 502 0.033920 GGAAACGACCGTAACTGGGT 59.966 55.000 0.00 0.00 41.48 4.51
501 503 2.831597 GGAAACGACCGTAACTGGG 58.168 57.895 0.00 0.00 0.00 4.45
514 516 3.694566 AGGTATGAAAATGGAGCGGAAAC 59.305 43.478 0.00 0.00 0.00 2.78
515 517 3.963129 AGGTATGAAAATGGAGCGGAAA 58.037 40.909 0.00 0.00 0.00 3.13
516 518 3.644966 AGGTATGAAAATGGAGCGGAA 57.355 42.857 0.00 0.00 0.00 4.30
517 519 3.494398 GCTAGGTATGAAAATGGAGCGGA 60.494 47.826 0.00 0.00 0.00 5.54
518 520 2.808543 GCTAGGTATGAAAATGGAGCGG 59.191 50.000 0.00 0.00 0.00 5.52
519 521 3.496130 CAGCTAGGTATGAAAATGGAGCG 59.504 47.826 0.00 0.00 33.91 5.03
520 522 4.274459 CACAGCTAGGTATGAAAATGGAGC 59.726 45.833 0.00 0.00 0.00 4.70
521 523 5.525378 GTCACAGCTAGGTATGAAAATGGAG 59.475 44.000 4.13 0.00 0.00 3.86
522 524 5.189736 AGTCACAGCTAGGTATGAAAATGGA 59.810 40.000 4.13 0.00 0.00 3.41
523 525 5.431765 AGTCACAGCTAGGTATGAAAATGG 58.568 41.667 4.13 0.00 0.00 3.16
524 526 6.108687 TGAGTCACAGCTAGGTATGAAAATG 58.891 40.000 4.13 0.00 0.00 2.32
525 527 6.299805 TGAGTCACAGCTAGGTATGAAAAT 57.700 37.500 4.13 0.00 0.00 1.82
526 528 5.738619 TGAGTCACAGCTAGGTATGAAAA 57.261 39.130 4.13 0.00 0.00 2.29
527 529 5.738619 TTGAGTCACAGCTAGGTATGAAA 57.261 39.130 4.13 0.00 0.00 2.69
528 530 5.738619 TTTGAGTCACAGCTAGGTATGAA 57.261 39.130 4.13 0.00 0.00 2.57
529 531 5.738619 TTTTGAGTCACAGCTAGGTATGA 57.261 39.130 0.00 0.00 0.00 2.15
608 610 1.189403 GAGATTACGTCGAAGCCACG 58.811 55.000 0.00 0.00 43.13 4.94
611 613 4.795268 TGATATGAGATTACGTCGAAGCC 58.205 43.478 0.00 0.00 0.00 4.35
612 614 5.117287 GGTTGATATGAGATTACGTCGAAGC 59.883 44.000 0.00 0.00 0.00 3.86
822 1193 2.185867 CCCACATACACCGGGTCG 59.814 66.667 6.32 0.00 35.03 4.79
838 1211 0.883833 CACCAATGAAGGAGCACACC 59.116 55.000 0.00 0.00 0.00 4.16
844 1217 2.005451 CGAAGAGCACCAATGAAGGAG 58.995 52.381 0.00 0.00 0.00 3.69
1111 1494 2.434884 ACGAGATGCGCTTGGGTG 60.435 61.111 9.73 0.00 46.04 4.61
1223 1613 2.434884 CGCATTGACGAGGCTGGT 60.435 61.111 0.31 0.31 31.55 4.00
1286 1676 0.819259 ATGTTGCAGAACACGCCTGT 60.819 50.000 0.00 0.00 44.90 4.00
1454 1844 0.685097 ACTACTTTGAGGGAGCGCAA 59.315 50.000 11.47 0.00 0.00 4.85
1466 1856 0.526662 CCGCTGAGGTCGACTACTTT 59.473 55.000 16.46 0.00 34.51 2.66
1472 1862 3.112709 GTTGCCGCTGAGGTCGAC 61.113 66.667 7.13 7.13 43.70 4.20
2668 3111 3.174788 GACAAATCGACACCGGCC 58.825 61.111 0.00 0.00 36.24 6.13
2917 3923 2.675242 CCCGGTGGGTATCTTGCCA 61.675 63.158 0.00 0.00 38.25 4.92
3040 4046 3.430098 CCTCCTCTTCACCATTTCTCTCG 60.430 52.174 0.00 0.00 0.00 4.04
3257 4353 5.337219 TGCTATTAATTGGTACATTCGCG 57.663 39.130 0.00 0.00 39.30 5.87
3514 4640 2.355837 GAGACGTTCACGCAGCCA 60.356 61.111 0.00 0.00 44.43 4.75
3539 4665 2.997897 GGTGGACCTGACGGAGCT 60.998 66.667 0.00 0.00 0.00 4.09
3602 4752 2.384309 CGCGGTTAACATCGGCACA 61.384 57.895 8.10 0.00 0.00 4.57
3625 4775 2.359850 GCACCATCTTGTCGGGCA 60.360 61.111 0.00 0.00 0.00 5.36
3668 4818 3.022287 CCGTGTTCACCTGCACAC 58.978 61.111 0.00 0.00 38.51 3.82
3669 4819 2.899838 GCCGTGTTCACCTGCACA 60.900 61.111 7.07 0.00 35.51 4.57
3775 4948 1.153429 GCAACCCTCGCGGATAAGT 60.153 57.895 6.13 0.00 34.64 2.24
3790 4963 0.465705 GATCCTCTCCACCATCGCAA 59.534 55.000 0.00 0.00 0.00 4.85
3791 4964 0.397675 AGATCCTCTCCACCATCGCA 60.398 55.000 0.00 0.00 0.00 5.10
4062 5569 0.103390 TCCGTCGTGTTCAGCTTTGA 59.897 50.000 0.00 0.00 0.00 2.69
4064 5571 0.104304 AGTCCGTCGTGTTCAGCTTT 59.896 50.000 0.00 0.00 0.00 3.51
4177 5691 1.811965 CCAATTGCCTGATGAACGACA 59.188 47.619 0.00 0.00 0.00 4.35
4193 5707 1.307647 GGACCTGGGCATGACCAAT 59.692 57.895 23.71 13.30 40.68 3.16
4198 5712 1.971505 GATCACGGACCTGGGCATGA 61.972 60.000 8.07 8.07 0.00 3.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.